@datagrok/sequence-translator 1.5.2 → 1.6.0

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Files changed (26) hide show
  1. package/.eslintrc.json +2 -2
  2. package/CHANGELOG.md +12 -0
  3. package/dist/package-test.js +1 -1
  4. package/dist/package-test.js.map +1 -1
  5. package/dist/package.js +1 -1
  6. package/dist/package.js.map +1 -1
  7. package/package.json +2 -2
  8. package/src/package.ts +1 -0
  9. package/src/polytool/conversion/pt-chain.ts +38 -635
  10. package/src/polytool/conversion/pt-conversion.ts +2 -3
  11. package/src/polytool/conversion/pt-misc.ts +8 -182
  12. package/src/polytool/conversion/pt-rules.ts +9 -4
  13. package/src/polytool/conversion/pt-synthetic.ts +279 -0
  14. package/src/polytool/conversion/pt-tools-helmmol.ts +114 -0
  15. package/src/polytool/conversion/pt-tools-parse.ts +356 -0
  16. package/src/polytool/conversion/rule-manager.ts +1 -1
  17. package/src/polytool/pt-dialog.ts +1 -1
  18. package/src/polytool/pt-enumerate-seq-dialog.ts +1 -1
  19. package/src/polytool/pt-enumeration-helm.ts +7 -5
  20. package/src/polytool/pt-unrule.ts +3 -3
  21. package/src/tests/polytool-chain-from-notation-tests.ts +34 -33
  22. package/src/tests/polytool-chain-parse-notation-tests.ts +2 -2
  23. package/src/tests/polytool-convert-tests.ts +14 -14
  24. package/src/tests/polytool-detectors-custom-notation-test.ts +1 -1
  25. package/src/tests/toAtomicLevel-tests.ts +4 -4
  26. package/src/utils/cyclized.ts +6 -4
package/src/utils/cyclized.ts CHANGED
@@ -46,13 +46,15 @@ export class CyclizedNotationProvider implements INotationProvider {
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  }
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  public getHelm(seq: string, options?: any): string {
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- const seqChain = Chain.parseNotation(seq, this.helmHelper);
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- const resPseudoHelm = seqChain.getNotationHelm();
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+ const seqChain = Chain.fromSeparator(seq, this.helmHelper);
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+ const resPseudoHelm = seqChain.getHelm();
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  return resPseudoHelm;
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  }
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- public createCellRendererBack(gridCol: DG.GridColumn | null, tableCol: DG.Column<string>): CellRendererBackBase<string> {
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- let maxLengthOfMonomer: number = 4; // (_package.bioProperties ? _package.bioProperties.maxMonomerLength : 4) ?? 50;
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+ public createCellRendererBack(gridCol: DG.GridColumn | null, tableCol: DG.Column<string>):
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+ CellRendererBackBase<string> {
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+ const maxLengthOfMonomer: number = 4;
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+ // (_package.bioProperties ? _package.bioProperties.maxMonomerLength : 4) ?? 50;
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  const back = new CyclizedCellRendererBack(gridCol, tableCol,
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  maxLengthOfMonomer, this.helmHelper.seqHelper);
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