@datagrok/sequence-translator 1.0.8 → 1.0.9

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Files changed (5) hide show
  1. package/dist/package.js +8 -8
  2. package/package.json +1 -1
  3. package/src/axolabs/constants.ts +5 -5
  4. package/src/structures-works/save-sense-antisense.ts +2 -2
  5. package/{test-SequenceTranslator-7770371320b2-ca4b554d.html → test-SequenceTranslator-7770371320b2-1d307ddc.html} +6 -6
package/package.json CHANGED
@@ -1,7 +1,7 @@
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  {
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  "name": "@datagrok/sequence-translator",
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  "friendlyName": "Sequence Translator",
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- "version": "1.0.8",
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+ "version": "1.0.9",
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  "author": {
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  "name": "Vadym Kovadlo",
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  "email": "vkovadlo@datagrok.ai"
package/src/axolabs/constants.ts CHANGED
@@ -13,17 +13,17 @@ export const axolabsMap:
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  symbols: ['dA', 'dC', 'dG', 'dT'],
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  color: 'rgb(197,224,180)',
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  },
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- '2\'-Fluoro': {
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+ "2\"-Fluoro": {
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  fullName: '2\'-Fluoro nucleotides',
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  symbols: ['Af', 'Cf', 'Gf', 'Uf'],
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  color: 'rgb(68,114,196)',
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  },
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- '2\'-O-Methyl': {
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+ "2\"-O-Methyl": {
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  fullName: '2\'-O-Methyl nucleotides',
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  symbols: ['a', 'c', 'g', 'u'],
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  color: 'rgb(166,166,166)',
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  },
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- '2\'-O-MOE': {
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+ "2\"-O-MOE": {
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  fullName: '2\'-O-MOE nucleotides (including 5-Methyl C)',
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  symbols: ['Am', 'Cm', 'Gm', 'Tm'],
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  color: 'rgb(112,48,160)',
@@ -83,7 +83,7 @@ export const axolabsMap:
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  symbols: ['(invabasic)', '(invabasic)', '(invabasic)', '(invabasic)'],
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  color: invAbasicColor,
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  },
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- '5\'-vinylps': {
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+ "5\"-vinylps": {
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  fullName: '5\'-vinylphosphonate-2\'-OMe-uridine',
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  symbols: ['(vinu)', '(vinu)', '(vinu)', '(vinu)'],
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  color: 'rgb(0,0,139)',
@@ -93,7 +93,7 @@ export const axolabsMap:
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  symbols: ['(invabasic)', '(invabasic)', '(invabasic)', '(invabasic)'],
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  color: invAbasicColor,
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  },
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- '2\'-OMe-U(o)': {
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+ "2\"-OMe-U(o)": {
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  fullName: 'Nucleotide Uridine with 2\'O-Methyl protection (overhang)',
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  symbols: ['mU', 'mU', 'mU', 'mU'],
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  color: 'rgb(65,233,80)',
package/src/structures-works/save-sense-antisense.ts CHANGED
@@ -29,8 +29,8 @@ export function saveSenseAntiSense() {
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  const moleculeSvgDiv = ui.block([]);
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  const ssInput = ui.textInput('Sense Strand', '');
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  const asInput = ui.textInput('Anti Sense', '');
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- const straight = '5\' ->3\'';
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- const inverse = '3\' ->5\'';
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+ const straight = "5 prime -> 3 prime";
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+ const inverse = "3 prime -> 5 prime";
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  let ssInverse = false;
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  let asInverse = false;
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package/{test-SequenceTranslator-7770371320b2-ca4b554d.html → test-SequenceTranslator-7770371320b2-1d307ddc.html} RENAMED
@@ -1,4 +1,4 @@
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- <html><head><meta charset="utf-8"/><title>SequenceTranslator Test Report. Datagrok version datagrok/datagrok:latest SHA=7770371320b2. Commit ca4b554d.</title><style type="text/css">html,
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+ <html><head><meta charset="utf-8"/><title>SequenceTranslator Test Report. Datagrok version datagrok/datagrok:latest SHA=7770371320b2. Commit 1d307ddc.</title><style type="text/css">html,
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  body {
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  font-family: Arial, Helvetica, sans-serif;
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  font-size: 1rem;
@@ -229,7 +229,7 @@ header {
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  font-size: 1rem;
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  padding: 0 0.5rem;
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  }
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- </style></head><body><div id="jesthtml-content"><header><h1 id="title">SequenceTranslator Test Report. Datagrok version datagrok/datagrok:latest SHA=7770371320b2. Commit ca4b554d.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-09-27 11:43:44</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/SequenceTranslator/src/__jest__/remote.test.ts</div><div class="suite-time warn">23.627s</div></div><div class="suite-tests"><div class="test-result passed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">passed</div><div class="test-duration">3.851s</div></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/SequenceTranslator/src/__jest__/test-node.ts:62:11)
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+ </style></head><body><div id="jesthtml-content"><header><h1 id="title">SequenceTranslator Test Report. Datagrok version datagrok/datagrok:latest SHA=7770371320b2. Commit 1d307ddc.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-09-29 08:43:13</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/SequenceTranslator/src/__jest__/remote.test.ts</div><div class="suite-time warn">17.787s</div></div><div class="suite-tests"><div class="test-result passed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">passed</div><div class="test-duration">2.717s</div></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/SequenceTranslator/src/__jest__/test-node.ts:62:11)
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  at Generator.next (&lt;anonymous&gt;)
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  at fulfilled (/home/runner/work/public/public/packages/SequenceTranslator/src/__jest__/test-node.ts:28:58)
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  at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Using web root: http://localhost:8080</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/SequenceTranslator/src/__jest__/remote.test.ts:40:11
@@ -242,15 +242,15 @@ header {
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  at new Promise (&lt;anonymous&gt;)</pre><pre class="suite-consolelog-item-message">Testing SequenceTranslator package</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/SequenceTranslator/src/__jest__/remote.test.ts:66:11
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  at Generator.next (&lt;anonymous&gt;)
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  at fulfilled (/home/runner/work/public/public/packages/SequenceTranslator/src/__jest__/remote.test.ts:28:58)
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- at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Test result : Success : 1 : SequenceTranslator.sequence-translator.usCfCfUfGfAf : OK
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+ at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Test result : Success : 2 : SequenceTranslator.sequence-translator.usCfCfUfGfAf : OK
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  Test result : Success : 1 : SequenceTranslator.sequence-translator.usAfsusgsgsg : OK
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- Test result : Success : 1 : SequenceTranslator.sequence-translator.UfUfUfsCfsuacg : OK
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+ Test result : Success : 0 : SequenceTranslator.sequence-translator.UfUfUfsCfsuacg : OK
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  Test result : Success : 0 : SequenceTranslator.sequence-translator.susususauasu : OK
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  Test result : Success : 0 : SequenceTranslator.sequence-translator.CfGfCfsGfsCf : OK
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- Test result : Success : 0 : SequenceTranslator.sequence-translator.acacacsacsac : OK
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+ Test result : Success : 1 : SequenceTranslator.sequence-translator.acacacsacsac : OK
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  Test result : Success : 0 : SequenceTranslator.sequence-translator.cccgggusug : OK
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  Test result : Success : 0 : SequenceTranslator.sequence-translator.UfAfCfGfGfCfAfUf : OK
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- Test result : Success : 1 : SequenceTranslator.sequence-translator.(invabasic)cuCfuUfsc : OK
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+ Test result : Success : 0 : SequenceTranslator.sequence-translator.(invabasic)cuCfuUfsc : OK
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  Test result : Success : 0 : SequenceTranslator.sequence-translator.(invabasic)usAfsucuCfuUfAfgcugUfgCfacususu : OK
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  Test result : Success : 0 : SequenceTranslator.sequence-translator.(invabasic)asacgGfuGfCfAfacucuauuca : OK
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  </pre></div></div></div></div></body></html>