@datagrok/proteomics 1.2.1 → 1.3.0

package/CHANGELOG.md

@@ -1,5 +1,21 @@
 # Proteomics changelog
 
+## 1.3.0 (2026-07-13)
+
+- **Rank–Abundance (dynamic-range) viewer** — visualize the abundance dynamic range across the
+  experiment.
+- **Abundance Correlation viewer** — the separate sample-correlation views are consolidated into
+  one viewer.
+- **Share analyses by project** — publish a read-only analysis snapshot to a reviewer team under a
+  controlled, admin-maintained project vocabulary. The Share dialog pre-selects a default reviewer
+  team, and administrators add/edit/remove project names from package settings.
+- **Enrichment ↔ volcano linked selection** — selecting one or more enrichment terms highlights the
+  union of their member proteins on the volcano.
+- **Numerical robustness** — imputation and quantile normalization now guard against NaN/Infinity on
+  edge-case inputs (single-value columns, degenerate random draws).
+- **Package icon** plus expanded documentation (publishing design rationale, the administrator role,
+  and projects/teams/package settings).
+
 ## 1.2.0
 
 - **Shared enrichment charts now survive reopen** — a published/shared analysis's enrichment

package/README.md

@@ -129,11 +129,11 @@ statistics view, so the two never drift apart:
 
 ### Share
 - **Share Analysis for Review** — publish a trimmed, read-only snapshot (table + volcano +
-  enrichment charts) to a reviewer group. The source table is never mutated; reviewer
-  access is verified (and rolled back on an over-permissive grant); the snapshot is
-  optionally re-opened and shape-checked to confirm it survives a reload; re-publishing
-  supersedes the prior version. A **Shared Analysis** context panel surfaces the
-  publication's audit trail.
+  enrichment charts) under a **project** (chosen from an admin-curated list) to a reviewer
+  **team**. The source table is never mutated; reviewer access is verified (and rolled back
+  on an over-permissive grant); the snapshot is optionally re-opened and shape-checked to
+  confirm it survives a reload; re-publishing supersedes the prior version. A **Shared
+  Analysis** context panel surfaces the publication's audit trail.
 
 ## Protein annotation
 
@@ -165,6 +165,19 @@ it hasn't seen — detectors match on column-name hints and validate sample valu
   require a configured Datagrok R compute environment; every R path has a client-side
   TypeScript fallback, so the package is fully functional without R.
 
+## Configuration
+
+Package administrators set these in **Plugins → Proteomics → Settings** (a custom editor
+replaces the default form). They gate and shape the Share flow:
+
+| Setting | What it does |
+|---------|--------------|
+| **Project vocabulary** | Controlled list of project names an analyst can share under. **Required before anyone can share** — with none configured, the Share dialog blocks and asks for an admin. Add / rename / remove entries as editable rows. |
+| **Default reviewer team** | Team pre-selected in the Share dialog's team picker; blank falls back to the first available team. |
+| **Review space name** | Umbrella Space shared snapshots publish under; each project gets a child Space inside it. |
+| **Review name prefix** | Prefix for published project names (`<prefix>-<project>-v<n>-<date>`); the suffix is fixed so re-share versioning keeps working. |
+| **Verify published dashboard** | Re-open each snapshot after publishing to confirm it survives a reload (safer; off = faster demo shares). |
+
 ## Demo data
 
 Example datasets ship in `files/demo/` (see its `README.md`):