@datagrok/proteomics 1.0.0 → 1.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (116) hide show
  1. package/CHANGELOG.md +52 -3
  2. package/CLAUDE.md +178 -0
  3. package/README.md +195 -3
  4. package/detectors.js +152 -9
  5. package/dist/package-test.js +1 -1744
  6. package/dist/package-test.js.map +1 -1
  7. package/dist/package.js +1 -146
  8. package/dist/package.js.map +1 -1
  9. package/docs/personas-and-capabilities.md +165 -0
  10. package/files/demo/README.md +264 -0
  11. package/files/demo/cptac-spike-in.txt +1571 -0
  12. package/files/demo/enrichment-demo.csv +120 -0
  13. package/files/demo/fragpipe-smoke-test.tsv +11 -0
  14. package/files/demo/proteinGroups.txt +28 -0
  15. package/files/demo/spectronaut-hye-candidates.tsv +94 -0
  16. package/files/demo/spectronaut-hye-demo.tsv +8761 -0
  17. package/files/demo/spectronaut-hye-mix.tsv +8761 -0
  18. package/files/demo/spectronaut-hye-precursor-golden.json +938 -0
  19. package/files/demo/spectronaut-hye-precursor-golden.tsv +235 -0
  20. package/files/demo/spectronaut-hye-precursor.tsv +493 -0
  21. package/images/enrichment-crosslink.png +0 -0
  22. package/images/enrichment-term-selected.png +0 -0
  23. package/images/hero.png +0 -0
  24. package/images/pipeline.svg +80 -0
  25. package/package.json +87 -62
  26. package/scripts/deqms_de.R +60 -0
  27. package/scripts/limma_de.R +42 -0
  28. package/scripts/vsn_normalize.R +19 -0
  29. package/src/analysis/differential-expression.ts +450 -0
  30. package/src/analysis/enrichment-export.ts +101 -0
  31. package/src/analysis/enrichment.ts +602 -0
  32. package/src/analysis/experiment-setup.ts +199 -0
  33. package/src/analysis/imputation.ts +407 -0
  34. package/src/analysis/log2-scale.ts +139 -0
  35. package/src/analysis/normalization.ts +255 -0
  36. package/src/analysis/pca.ts +254 -0
  37. package/src/analysis/spc-storage.ts +515 -0
  38. package/src/analysis/spc.ts +544 -0
  39. package/src/analysis/subcellular-location.ts +431 -0
  40. package/src/demo/enrichment-demo.ts +94 -0
  41. package/src/demo/proteomics-demo.ts +123 -0
  42. package/src/global.d.ts +15 -0
  43. package/src/menu.ts +133 -0
  44. package/src/package-api.ts +136 -14
  45. package/src/package-test.ts +45 -20
  46. package/src/package.g.ts +161 -0
  47. package/src/package.ts +1029 -17
  48. package/src/panels/protein-focus.ts +63 -0
  49. package/src/panels/published-analysis-panel.ts +151 -0
  50. package/src/panels/uniprot-panel.ts +349 -0
  51. package/src/parsers/fragpipe-parser.ts +200 -0
  52. package/src/parsers/generic-parser.ts +197 -0
  53. package/src/parsers/maxquant-parser.ts +162 -0
  54. package/src/parsers/shared-utils.ts +163 -0
  55. package/src/parsers/spectronaut-candidates-parser.ts +307 -0
  56. package/src/parsers/spectronaut-parser.ts +604 -0
  57. package/src/publishing/assert-published-shape.ts +260 -0
  58. package/src/publishing/post-open-recovery.ts +104 -0
  59. package/src/publishing/publish-project.ts +515 -0
  60. package/src/publishing/publish-settings.ts +59 -0
  61. package/src/publishing/publish-state.ts +316 -0
  62. package/src/publishing/share-dialog.ts +171 -0
  63. package/src/publishing/trim-dataframe.ts +247 -0
  64. package/src/tests/analysis.ts +658 -0
  65. package/src/tests/enrichment-export.ts +61 -0
  66. package/src/tests/enrichment-visualization.ts +340 -0
  67. package/src/tests/enrichment.ts +224 -0
  68. package/src/tests/fragpipe-e2e.ts +74 -0
  69. package/src/tests/fragpipe-parser.ts +147 -0
  70. package/src/tests/gene-label-resolver.ts +387 -0
  71. package/src/tests/generic-parser.ts +152 -0
  72. package/src/tests/group-mean-correlation.ts +139 -0
  73. package/src/tests/log2-scale.ts +93 -0
  74. package/src/tests/organisms.ts +56 -0
  75. package/src/tests/parsers.ts +182 -0
  76. package/src/tests/publish-roundtrip.ts +584 -0
  77. package/src/tests/publish-spike.ts +377 -0
  78. package/src/tests/qc-dashboard.ts +210 -0
  79. package/src/tests/smart-pathway-filter.ts +193 -0
  80. package/src/tests/spc-formula-lines-spike.ts +129 -0
  81. package/src/tests/spc.ts +640 -0
  82. package/src/tests/spectronaut-candidates-e2e.ts +140 -0
  83. package/src/tests/spectronaut-candidates-parser.ts +398 -0
  84. package/src/tests/spectronaut-parser.ts +668 -0
  85. package/src/tests/subcellular-location.ts +361 -0
  86. package/src/tests/uniprot-panel.ts +202 -0
  87. package/src/tests/volcano.ts +603 -0
  88. package/src/utils/column-detection.ts +28 -0
  89. package/src/utils/gene-label-resolver.ts +443 -0
  90. package/src/utils/organisms.ts +82 -0
  91. package/src/utils/proteomics-types.ts +30 -0
  92. package/src/viewers/enrichment-viewers.ts +274 -0
  93. package/src/viewers/group-mean-correlation.ts +218 -0
  94. package/src/viewers/heatmap.ts +168 -0
  95. package/src/viewers/pca-plot.ts +169 -0
  96. package/src/viewers/qc-computations.ts +266 -0
  97. package/src/viewers/qc-dashboard.ts +176 -0
  98. package/src/viewers/spc-dashboard.ts +755 -0
  99. package/src/viewers/volcano.ts +690 -0
  100. package/test-console-output-1.log +2055 -0
  101. package/test-record-1.mp4 +0 -0
  102. package/tools/derive-precursor-golden-sidecar.mjs +81 -0
  103. package/tools/generate-enrichment-fixture.sh +160 -0
  104. package/tools/generate-spectronaut-candidates-fixture.mjs +212 -0
  105. package/tools/generate-spectronaut-precursor-fixture.mjs +128 -0
  106. package/tools/spectronaut-aggregate.sh +46 -0
  107. package/tools/spectronaut-aggregate.sql +80 -0
  108. package/tsconfig.json +18 -71
  109. package/webpack.config.js +86 -45
  110. package/.eslintignore +0 -1
  111. package/.eslintrc.json +0 -56
  112. package/LICENSE +0 -674
  113. package/package.png +0 -0
  114. package/scripts/number_antibody.py +0 -190
  115. package/scripts/number_antibody_abnumber.py +0 -177
  116. package/scripts/number_antibody_anarci.py +0 -200
package/files/demo/spectronaut-hye-precursor.tsv ADDED
@@ -0,0 +1,493 @@
1
+ R.FileName R.Condition R.Replicate PG.ProteinGroups PG.Organisms PG.Quantity EG.Qvalue PEP.StrippedSequence EG.ModifiedPeptide FG.Charge FG.Id
2
+ run_CondA_1 CondA 1 P00000 Homo sapiens 1000 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondA_1 CondA 1 P00000 Homo sapiens 1000 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondA_2 CondA 2 P00000 Homo sapiens 1000 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondA_2 CondA 2 P00000 Homo sapiens 1000 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondA_3 CondA 3 P00000 Homo sapiens 1000 0.001 PEPTIDER _PEPTIDER_ 2 FG1
7
+ run_CondA_3 CondA 3 P00000 Homo sapiens 1000 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondB_1 CondB 1 P00000 Homo sapiens 1000 0.001 PEPTIDER _PEPTIDER_ 2 FG1
9
+ run_CondB_1 CondB 1 P00000 Homo sapiens 1000 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondB_2 CondB 2 P00000 Homo sapiens 1000 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondB_2 CondB 2 P00000 Homo sapiens 1000 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondB_3 CondB 3 P00000 Homo sapiens 1000 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondB_3 CondB 3 P00000 Homo sapiens 1000 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondA_1 CondA 1 P00001 Saccharomyces cerevisiae 1001 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondA_1 CondA 1 P00001 Saccharomyces cerevisiae 1001 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondA_2 CondA 2 P00001 Saccharomyces cerevisiae 1001 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondA_2 CondA 2 P00001 Saccharomyces cerevisiae 1001 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondA_3 CondA 3 P00001 Saccharomyces cerevisiae 1001 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondA_3 CondA 3 P00001 Saccharomyces cerevisiae 1001 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondB_1 CondB 1 P00001 Saccharomyces cerevisiae 1001 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondB_1 CondB 1 P00001 Saccharomyces cerevisiae 1001 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondB_2 CondB 2 P00001 Saccharomyces cerevisiae 1001 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondB_3 CondB 3 P00001 Saccharomyces cerevisiae 1001 0.001 PEPTIDER _PEPTIDER_ 2 FG1
25
+ run_CondB_3 CondB 3 P00001 Saccharomyces cerevisiae 1001 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondA_1 CondA 1 P00002 Escherichia coli 1002 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondA_2 CondA 2 P00002 Escherichia coli 1002 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondA_2 CondA 2 P00002 Escherichia coli 1002 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondA_3 CondA 3 P00002 Escherichia coli 1002 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondA_3 CondA 3 P00002 Escherichia coli 1002 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondB_1 CondB 1 P00002 Escherichia coli 1002 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondB_1 CondB 1 P00002 Escherichia coli 1002 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
34
+ run_CondB_2 CondB 2 P00002 Escherichia coli 1002 0.001 PEPTIDER _PEPTIDER_ 2 FG1
35
+ run_CondB_2 CondB 2 P00002 Escherichia coli 1002 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondB_3 CondB 3 P00002 Escherichia coli 1002 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondB_3 CondB 3 P00002 Escherichia coli 1002 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondA_1 CondA 1 P00003 Homo sapiens 1003 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondA_1 CondA 1 P00003 Homo sapiens 1003 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
40
+ run_CondA_2 CondA 2 P00003 Homo sapiens 1003 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondA_3 CondA 3 P00003 Homo sapiens 1003 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondA_3 CondA 3 P00003 Homo sapiens 1003 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondB_1 CondB 1 P00003 Homo sapiens 1003 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondB_1 CondB 1 P00003 Homo sapiens 1003 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
46
+ run_CondB_2 CondB 2 P00003 Homo sapiens 1003 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondB_2 CondB 2 P00003 Homo sapiens 1003 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
48
+ run_CondB_3 CondB 3 P00003 Homo sapiens 1003 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondB_3 CondB 3 P00003 Homo sapiens 1003 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
50
+ run_CondA_1 CondA 1 P00004 Saccharomyces cerevisiae 1004 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondA_1 CondA 1 P00004 Saccharomyces cerevisiae 1004 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondA_2 CondA 2 P00004 Saccharomyces cerevisiae 1004 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondA_3 CondA 3 P00004 Saccharomyces cerevisiae 1004 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondA_3 CondA 3 P00004 Saccharomyces cerevisiae 1004 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondB_1 CondB 1 P00004 Saccharomyces cerevisiae 1004 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondB_1 CondB 1 P00004 Saccharomyces cerevisiae 1004 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondB_2 CondB 2 P00004 Saccharomyces cerevisiae 1004 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondB_3 CondB 3 P00004 Saccharomyces cerevisiae 1004 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondB_3 CondB 3 P00004 Saccharomyces cerevisiae 1004 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondA_1 CondA 1 P00005 Escherichia coli 1005 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondA_1 CondA 1 P00005 Escherichia coli 1005 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondA_2 CondA 2 P00005 Escherichia coli 1005 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondA_2 CondA 2 P00005 Escherichia coli 1005 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondA_3 CondA 3 P00005 Escherichia coli 1005 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondA_3 CondA 3 P00005 Escherichia coli 1005 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondB_1 CondB 1 P00005 Escherichia coli 1005 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondB_1 CondB 1 P00005 Escherichia coli 1005 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondB_2 CondB 2 P00005 Escherichia coli 1005 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondB_2 CondB 2 P00005 Escherichia coli 1005 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondB_3 CondB 3 P00005 Escherichia coli 1005 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondB_3 CondB 3 P00005 Escherichia coli 1005 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+ run_CondA_1 CondA 1 P00006 Homo sapiens 1006 0.001 PEPTIDER _PEPTIDER_ 2 FG1
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+ run_CondA_3 CondA 3 P00011 Escherichia coli 1011 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
140
+ run_CondB_1 CondB 1 P00011 Escherichia coli 1011 0.001 PEPTIDER _PEPTIDER_ 2 FG1
141
+ run_CondB_1 CondB 1 P00011 Escherichia coli 1011 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
142
+ run_CondB_2 CondB 2 P00011 Escherichia coli 1011 0.001 PEPTIDER _PEPTIDER_ 2 FG1
143
+ run_CondB_2 CondB 2 P00011 Escherichia coli 1011 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
144
+ run_CondB_3 CondB 3 P00011 Escherichia coli 1011 0.001 PEPTIDER _PEPTIDER_ 2 FG1
145
+ run_CondB_3 CondB 3 P00011 Escherichia coli 1011 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
146
+ run_CondA_1 CondA 1 P00012 Homo sapiens 1012 0.001 PEPTIDER _PEPTIDER_ 2 FG1
147
+ run_CondA_1 CondA 1 P00012 Homo sapiens 1012 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
148
+ run_CondA_2 CondA 2 P00012 Homo sapiens 1012 0.001 PEPTIDER _PEPTIDER_ 2 FG1
149
+ run_CondA_2 CondA 2 P00012 Homo sapiens 1012 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
150
+ run_CondA_3 CondA 3 P00012 Homo sapiens 1012 0.001 PEPTIDER _PEPTIDER_ 2 FG1
151
+ run_CondA_3 CondA 3 P00012 Homo sapiens 1012 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
152
+ run_CondB_1 CondB 1 P00012 Homo sapiens 1012 0.001 PEPTIDER _PEPTIDER_ 2 FG1
153
+ run_CondB_1 CondB 1 P00012 Homo sapiens 1012 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
154
+ run_CondB_2 CondB 2 P00012 Homo sapiens 1012 0.001 PEPTIDER _PEPTIDER_ 2 FG1
155
+ run_CondB_2 CondB 2 P00012 Homo sapiens 1012 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
156
+ run_CondB_3 CondB 3 P00012 Homo sapiens 1012 0.001 PEPTIDER _PEPTIDER_ 2 FG1
157
+ run_CondB_3 CondB 3 P00012 Homo sapiens 1012 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
158
+ run_CondA_1 CondA 1 P00013 Saccharomyces cerevisiae 1013 0.001 PEPTIDER _PEPTIDER_ 2 FG1
159
+ run_CondA_1 CondA 1 P00013 Saccharomyces cerevisiae 1013 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
160
+ run_CondA_2 CondA 2 P00013 Saccharomyces cerevisiae 1013 0.001 PEPTIDER _PEPTIDER_ 2 FG1
161
+ run_CondA_2 CondA 2 P00013 Saccharomyces cerevisiae 1013 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
162
+ run_CondA_3 CondA 3 P00013 Saccharomyces cerevisiae 1013 0.001 PEPTIDER _PEPTIDER_ 2 FG1
163
+ run_CondA_3 CondA 3 P00013 Saccharomyces cerevisiae 1013 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
164
+ run_CondB_1 CondB 1 P00013 Saccharomyces cerevisiae 1013 0.001 PEPTIDER _PEPTIDER_ 2 FG1
165
+ run_CondB_1 CondB 1 P00013 Saccharomyces cerevisiae 1013 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
166
+ run_CondB_2 CondB 2 P00013 Saccharomyces cerevisiae 1013 0.001 PEPTIDER _PEPTIDER_ 2 FG1
167
+ run_CondB_2 CondB 2 P00013 Saccharomyces cerevisiae 1013 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
168
+ run_CondB_3 CondB 3 P00013 Saccharomyces cerevisiae 1013 0.001 PEPTIDER _PEPTIDER_ 2 FG1
169
+ run_CondB_3 CondB 3 P00013 Saccharomyces cerevisiae 1013 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
170
+ run_CondA_1 CondA 1 P00014 Escherichia coli 1014 0.001 PEPTIDER _PEPTIDER_ 2 FG1
171
+ run_CondA_1 CondA 1 P00014 Escherichia coli 1014 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
172
+ run_CondA_2 CondA 2 P00014 Escherichia coli 1014 0.001 PEPTIDER _PEPTIDER_ 2 FG1
173
+ run_CondA_2 CondA 2 P00014 Escherichia coli 1014 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
174
+ run_CondA_3 CondA 3 P00014 Escherichia coli 1014 0.001 PEPTIDER _PEPTIDER_ 2 FG1
175
+ run_CondA_3 CondA 3 P00014 Escherichia coli 1014 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
176
+ run_CondB_1 CondB 1 P00014 Escherichia coli 1014 0.001 PEPTIDER _PEPTIDER_ 2 FG1
177
+ run_CondB_1 CondB 1 P00014 Escherichia coli 1014 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
178
+ run_CondB_2 CondB 2 P00014 Escherichia coli 1014 0.001 PEPTIDER _PEPTIDER_ 2 FG1
179
+ run_CondB_2 CondB 2 P00014 Escherichia coli 1014 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
180
+ run_CondB_3 CondB 3 P00014 Escherichia coli 1014 0.001 PEPTIDER _PEPTIDER_ 2 FG1
181
+ run_CondB_3 CondB 3 P00014 Escherichia coli 1014 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
182
+ run_CondA_1 CondA 1 P00015 Homo sapiens 1015 0.001 PEPTIDER _PEPTIDER_ 2 FG1
183
+ run_CondA_1 CondA 1 P00015 Homo sapiens 1015 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
184
+ run_CondA_2 CondA 2 P00015 Homo sapiens 1015 0.001 PEPTIDER _PEPTIDER_ 2 FG1
185
+ run_CondA_2 CondA 2 P00015 Homo sapiens 1015 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
186
+ run_CondA_3 CondA 3 P00015 Homo sapiens 1015 0.001 PEPTIDER _PEPTIDER_ 2 FG1
187
+ run_CondA_3 CondA 3 P00015 Homo sapiens 1015 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
188
+ run_CondB_1 CondB 1 P00015 Homo sapiens 1015 0.001 PEPTIDER _PEPTIDER_ 2 FG1
189
+ run_CondB_1 CondB 1 P00015 Homo sapiens 1015 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
190
+ run_CondB_2 CondB 2 P00015 Homo sapiens 1015 0.001 PEPTIDER _PEPTIDER_ 2 FG1
191
+ run_CondB_2 CondB 2 P00015 Homo sapiens 1015 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
192
+ run_CondB_3 CondB 3 P00015 Homo sapiens 1015 0.001 PEPTIDER _PEPTIDER_ 2 FG1
193
+ run_CondB_3 CondB 3 P00015 Homo sapiens 1015 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
194
+ run_CondA_1 CondA 1 P00016 Saccharomyces cerevisiae 1016 0.001 PEPTIDER _PEPTIDER_ 2 FG1
195
+ run_CondA_1 CondA 1 P00016 Saccharomyces cerevisiae 1016 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
196
+ run_CondA_2 CondA 2 P00016 Saccharomyces cerevisiae 1016 0.001 PEPTIDER _PEPTIDER_ 2 FG1
197
+ run_CondA_2 CondA 2 P00016 Saccharomyces cerevisiae 1016 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
198
+ run_CondA_3 CondA 3 P00016 Saccharomyces cerevisiae 1016 0.001 PEPTIDER _PEPTIDER_ 2 FG1
199
+ run_CondA_3 CondA 3 P00016 Saccharomyces cerevisiae 1016 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
200
+ run_CondB_1 CondB 1 P00016 Saccharomyces cerevisiae 1016 0.001 PEPTIDER _PEPTIDER_ 2 FG1
201
+ run_CondB_1 CondB 1 P00016 Saccharomyces cerevisiae 1016 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
202
+ run_CondB_2 CondB 2 P00016 Saccharomyces cerevisiae 1016 0.001 PEPTIDER _PEPTIDER_ 2 FG1
203
+ run_CondB_2 CondB 2 P00016 Saccharomyces cerevisiae 1016 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
204
+ run_CondB_3 CondB 3 P00016 Saccharomyces cerevisiae 1016 0.001 PEPTIDER _PEPTIDER_ 2 FG1
205
+ run_CondB_3 CondB 3 P00016 Saccharomyces cerevisiae 1016 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
206
+ run_CondA_1 CondA 1 P00017 Escherichia coli 1017 0.001 PEPTIDER _PEPTIDER_ 2 FG1
207
+ run_CondA_1 CondA 1 P00017 Escherichia coli 1017 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
208
+ run_CondA_2 CondA 2 P00017 Escherichia coli 1017 0.001 PEPTIDER _PEPTIDER_ 2 FG1
209
+ run_CondA_2 CondA 2 P00017 Escherichia coli 1017 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
210
+ run_CondA_3 CondA 3 P00017 Escherichia coli 1017 0.001 PEPTIDER _PEPTIDER_ 2 FG1
211
+ run_CondA_3 CondA 3 P00017 Escherichia coli 1017 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
212
+ run_CondB_1 CondB 1 P00017 Escherichia coli 1017 0.001 PEPTIDER _PEPTIDER_ 2 FG1
213
+ run_CondB_1 CondB 1 P00017 Escherichia coli 1017 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
214
+ run_CondB_2 CondB 2 P00017 Escherichia coli 1017 0.001 PEPTIDER _PEPTIDER_ 2 FG1
215
+ run_CondB_2 CondB 2 P00017 Escherichia coli 1017 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
216
+ run_CondB_3 CondB 3 P00017 Escherichia coli 1017 0.001 PEPTIDER _PEPTIDER_ 2 FG1
217
+ run_CondB_3 CondB 3 P00017 Escherichia coli 1017 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
218
+ run_CondA_1 CondA 1 P00018 Homo sapiens 1018 0.001 PEPTIDER _PEPTIDER_ 2 FG1
219
+ run_CondA_1 CondA 1 P00018 Homo sapiens 1018 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
220
+ run_CondA_2 CondA 2 P00018 Homo sapiens 1018 0.001 PEPTIDER _PEPTIDER_ 2 FG1
221
+ run_CondA_2 CondA 2 P00018 Homo sapiens 1018 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
222
+ run_CondA_3 CondA 3 P00018 Homo sapiens 1018 0.001 PEPTIDER _PEPTIDER_ 2 FG1
223
+ run_CondA_3 CondA 3 P00018 Homo sapiens 1018 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
224
+ run_CondB_1 CondB 1 P00018 Homo sapiens 1018 0.001 PEPTIDER _PEPTIDER_ 2 FG1
225
+ run_CondB_1 CondB 1 P00018 Homo sapiens 1018 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
226
+ run_CondB_2 CondB 2 P00018 Homo sapiens 1018 0.001 PEPTIDER _PEPTIDER_ 2 FG1
227
+ run_CondB_2 CondB 2 P00018 Homo sapiens 1018 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
228
+ run_CondB_3 CondB 3 P00018 Homo sapiens 1018 0.001 PEPTIDER _PEPTIDER_ 2 FG1
229
+ run_CondB_3 CondB 3 P00018 Homo sapiens 1018 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
230
+ run_CondA_1 CondA 1 P00019 Saccharomyces cerevisiae 1019 0.001 PEPTIDER _PEPTIDER_ 2 FG1
231
+ run_CondA_1 CondA 1 P00019 Saccharomyces cerevisiae 1019 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
232
+ run_CondA_2 CondA 2 P00019 Saccharomyces cerevisiae 1019 0.001 PEPTIDER _PEPTIDER_ 2 FG1
233
+ run_CondA_2 CondA 2 P00019 Saccharomyces cerevisiae 1019 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
234
+ run_CondA_3 CondA 3 P00019 Saccharomyces cerevisiae 1019 0.001 PEPTIDER _PEPTIDER_ 2 FG1
235
+ run_CondA_3 CondA 3 P00019 Saccharomyces cerevisiae 1019 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
236
+ run_CondB_1 CondB 1 P00019 Saccharomyces cerevisiae 1019 0.001 PEPTIDER _PEPTIDER_ 2 FG1
237
+ run_CondB_1 CondB 1 P00019 Saccharomyces cerevisiae 1019 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
238
+ run_CondB_2 CondB 2 P00019 Saccharomyces cerevisiae 1019 0.001 PEPTIDER _PEPTIDER_ 2 FG1
239
+ run_CondB_2 CondB 2 P00019 Saccharomyces cerevisiae 1019 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
240
+ run_CondB_3 CondB 3 P00019 Saccharomyces cerevisiae 1019 0.001 PEPTIDER _PEPTIDER_ 2 FG1
241
+ run_CondB_3 CondB 3 P00019 Saccharomyces cerevisiae 1019 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
242
+ run_CondA_1 CondA 1 P00020 Escherichia coli 1020 0.001 PEPTIDER _PEPTIDER_ 2 FG1
243
+ run_CondA_1 CondA 1 P00020 Escherichia coli 1020 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
244
+ run_CondA_2 CondA 2 P00020 Escherichia coli 1020 0.001 PEPTIDER _PEPTIDER_ 2 FG1
245
+ run_CondA_2 CondA 2 P00020 Escherichia coli 1020 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
246
+ run_CondA_3 CondA 3 P00020 Escherichia coli 1020 0.001 PEPTIDER _PEPTIDER_ 2 FG1
247
+ run_CondA_3 CondA 3 P00020 Escherichia coli 1020 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
248
+ run_CondB_1 CondB 1 P00020 Escherichia coli 1020 0.001 PEPTIDER _PEPTIDER_ 2 FG1
249
+ run_CondB_1 CondB 1 P00020 Escherichia coli 1020 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
250
+ run_CondB_2 CondB 2 P00020 Escherichia coli 1020 0.001 PEPTIDER _PEPTIDER_ 2 FG1
251
+ run_CondB_2 CondB 2 P00020 Escherichia coli 1020 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
252
+ run_CondB_3 CondB 3 P00020 Escherichia coli 1020 0.001 PEPTIDER _PEPTIDER_ 2 FG1
253
+ run_CondB_3 CondB 3 P00020 Escherichia coli 1020 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
254
+ run_CondA_1 CondA 1 P00021 Homo sapiens 1021 0.001 PEPTIDER _PEPTIDER_ 2 FG1
255
+ run_CondA_1 CondA 1 P00021 Homo sapiens 1021 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
256
+ run_CondA_2 CondA 2 P00021 Homo sapiens 1021 0.001 PEPTIDER _PEPTIDER_ 2 FG1
257
+ run_CondA_2 CondA 2 P00021 Homo sapiens 1021 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
258
+ run_CondA_3 CondA 3 P00021 Homo sapiens 1021 0.001 PEPTIDER _PEPTIDER_ 2 FG1
259
+ run_CondA_3 CondA 3 P00021 Homo sapiens 1021 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
260
+ run_CondB_1 CondB 1 P00021 Homo sapiens 1021 0.001 PEPTIDER _PEPTIDER_ 2 FG1
261
+ run_CondB_1 CondB 1 P00021 Homo sapiens 1021 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
262
+ run_CondB_2 CondB 2 P00021 Homo sapiens 1021 0.001 PEPTIDER _PEPTIDER_ 2 FG1
263
+ run_CondB_2 CondB 2 P00021 Homo sapiens 1021 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
264
+ run_CondB_3 CondB 3 P00021 Homo sapiens 1021 0.001 PEPTIDER _PEPTIDER_ 2 FG1
265
+ run_CondB_3 CondB 3 P00021 Homo sapiens 1021 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
266
+ run_CondA_1 CondA 1 P00022 Saccharomyces cerevisiae 1022 0.001 PEPTIDER _PEPTIDER_ 2 FG1
267
+ run_CondA_1 CondA 1 P00022 Saccharomyces cerevisiae 1022 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
268
+ run_CondA_2 CondA 2 P00022 Saccharomyces cerevisiae 1022 0.001 PEPTIDER _PEPTIDER_ 2 FG1
269
+ run_CondA_2 CondA 2 P00022 Saccharomyces cerevisiae 1022 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
270
+ run_CondA_3 CondA 3 P00022 Saccharomyces cerevisiae 1022 0.001 PEPTIDER _PEPTIDER_ 2 FG1
271
+ run_CondA_3 CondA 3 P00022 Saccharomyces cerevisiae 1022 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
272
+ run_CondB_1 CondB 1 P00022 Saccharomyces cerevisiae 1022 0.001 PEPTIDER _PEPTIDER_ 2 FG1
273
+ run_CondB_1 CondB 1 P00022 Saccharomyces cerevisiae 1022 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
274
+ run_CondB_2 CondB 2 P00022 Saccharomyces cerevisiae 1022 0.001 PEPTIDER _PEPTIDER_ 2 FG1
275
+ run_CondB_2 CondB 2 P00022 Saccharomyces cerevisiae 1022 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
276
+ run_CondB_3 CondB 3 P00022 Saccharomyces cerevisiae 1022 0.001 PEPTIDER _PEPTIDER_ 2 FG1
277
+ run_CondB_3 CondB 3 P00022 Saccharomyces cerevisiae 1022 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
278
+ run_CondA_1 CondA 1 P00023 Escherichia coli 1023 0.001 PEPTIDER _PEPTIDER_ 2 FG1
279
+ run_CondA_1 CondA 1 P00023 Escherichia coli 1023 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
280
+ run_CondA_2 CondA 2 P00023 Escherichia coli 1023 0.001 PEPTIDER _PEPTIDER_ 2 FG1
281
+ run_CondA_2 CondA 2 P00023 Escherichia coli 1023 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
282
+ run_CondA_3 CondA 3 P00023 Escherichia coli 1023 0.001 PEPTIDER _PEPTIDER_ 2 FG1
283
+ run_CondA_3 CondA 3 P00023 Escherichia coli 1023 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
284
+ run_CondB_1 CondB 1 P00023 Escherichia coli 1023 0.001 PEPTIDER _PEPTIDER_ 2 FG1
285
+ run_CondB_1 CondB 1 P00023 Escherichia coli 1023 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
286
+ run_CondB_2 CondB 2 P00023 Escherichia coli 1023 0.001 PEPTIDER _PEPTIDER_ 2 FG1
287
+ run_CondB_2 CondB 2 P00023 Escherichia coli 1023 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
288
+ run_CondB_3 CondB 3 P00023 Escherichia coli 1023 0.001 PEPTIDER _PEPTIDER_ 2 FG1
289
+ run_CondB_3 CondB 3 P00023 Escherichia coli 1023 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
290
+ run_CondA_1 CondA 1 P00024 Homo sapiens 1024 0.001 PEPTIDER _PEPTIDER_ 2 FG1
291
+ run_CondA_1 CondA 1 P00024 Homo sapiens 1024 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
292
+ run_CondA_2 CondA 2 P00024 Homo sapiens 1024 0.001 PEPTIDER _PEPTIDER_ 2 FG1
293
+ run_CondA_2 CondA 2 P00024 Homo sapiens 1024 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
294
+ run_CondA_3 CondA 3 P00024 Homo sapiens 1024 0.001 PEPTIDER _PEPTIDER_ 2 FG1
295
+ run_CondA_3 CondA 3 P00024 Homo sapiens 1024 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
296
+ run_CondB_1 CondB 1 P00024 Homo sapiens 1024 0.001 PEPTIDER _PEPTIDER_ 2 FG1
297
+ run_CondB_1 CondB 1 P00024 Homo sapiens 1024 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
298
+ run_CondB_2 CondB 2 P00024 Homo sapiens 1024 0.001 PEPTIDER _PEPTIDER_ 2 FG1
299
+ run_CondB_2 CondB 2 P00024 Homo sapiens 1024 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
300
+ run_CondB_3 CondB 3 P00024 Homo sapiens 1024 0.001 PEPTIDER _PEPTIDER_ 2 FG1
301
+ run_CondB_3 CondB 3 P00024 Homo sapiens 1024 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
302
+ run_CondA_1 CondA 1 P00025 Saccharomyces cerevisiae 1025 0.001 PEPTIDER _PEPTIDER_ 2 FG1
303
+ run_CondA_1 CondA 1 P00025 Saccharomyces cerevisiae 1025 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
304
+ run_CondA_2 CondA 2 P00025 Saccharomyces cerevisiae 1025 0.001 PEPTIDER _PEPTIDER_ 2 FG1
305
+ run_CondA_2 CondA 2 P00025 Saccharomyces cerevisiae 1025 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
306
+ run_CondA_3 CondA 3 P00025 Saccharomyces cerevisiae 1025 0.001 PEPTIDER _PEPTIDER_ 2 FG1
307
+ run_CondA_3 CondA 3 P00025 Saccharomyces cerevisiae 1025 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
308
+ run_CondB_1 CondB 1 P00025 Saccharomyces cerevisiae 1025 0.001 PEPTIDER _PEPTIDER_ 2 FG1
309
+ run_CondB_1 CondB 1 P00025 Saccharomyces cerevisiae 1025 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
310
+ run_CondB_2 CondB 2 P00025 Saccharomyces cerevisiae 1025 0.001 PEPTIDER _PEPTIDER_ 2 FG1
311
+ run_CondB_2 CondB 2 P00025 Saccharomyces cerevisiae 1025 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
312
+ run_CondB_3 CondB 3 P00025 Saccharomyces cerevisiae 1025 0.001 PEPTIDER _PEPTIDER_ 2 FG1
313
+ run_CondB_3 CondB 3 P00025 Saccharomyces cerevisiae 1025 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
314
+ run_CondA_1 CondA 1 P00026 Escherichia coli 1026 0.001 PEPTIDER _PEPTIDER_ 2 FG1
315
+ run_CondA_1 CondA 1 P00026 Escherichia coli 1026 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
316
+ run_CondA_2 CondA 2 P00026 Escherichia coli 1026 0.001 PEPTIDER _PEPTIDER_ 2 FG1
317
+ run_CondA_2 CondA 2 P00026 Escherichia coli 1026 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
318
+ run_CondA_3 CondA 3 P00026 Escherichia coli 1026 0.001 PEPTIDER _PEPTIDER_ 2 FG1
319
+ run_CondA_3 CondA 3 P00026 Escherichia coli 1026 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
320
+ run_CondB_1 CondB 1 P00026 Escherichia coli 1026 0.001 PEPTIDER _PEPTIDER_ 2 FG1
321
+ run_CondB_1 CondB 1 P00026 Escherichia coli 1026 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
322
+ run_CondB_2 CondB 2 P00026 Escherichia coli 1026 0.001 PEPTIDER _PEPTIDER_ 2 FG1
323
+ run_CondB_2 CondB 2 P00026 Escherichia coli 1026 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
324
+ run_CondB_3 CondB 3 P00026 Escherichia coli 1026 0.001 PEPTIDER _PEPTIDER_ 2 FG1
325
+ run_CondB_3 CondB 3 P00026 Escherichia coli 1026 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
326
+ run_CondA_1 CondA 1 P00027 Homo sapiens 1027 0.001 PEPTIDER _PEPTIDER_ 2 FG1
327
+ run_CondA_1 CondA 1 P00027 Homo sapiens 1027 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
328
+ run_CondA_2 CondA 2 P00027 Homo sapiens 1027 0.001 PEPTIDER _PEPTIDER_ 2 FG1
329
+ run_CondA_2 CondA 2 P00027 Homo sapiens 1027 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
330
+ run_CondA_3 CondA 3 P00027 Homo sapiens 1027 0.001 PEPTIDER _PEPTIDER_ 2 FG1
331
+ run_CondA_3 CondA 3 P00027 Homo sapiens 1027 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
332
+ run_CondB_1 CondB 1 P00027 Homo sapiens 1027 0.001 PEPTIDER _PEPTIDER_ 2 FG1
333
+ run_CondB_1 CondB 1 P00027 Homo sapiens 1027 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
334
+ run_CondB_2 CondB 2 P00027 Homo sapiens 1027 0.001 PEPTIDER _PEPTIDER_ 2 FG1
335
+ run_CondB_2 CondB 2 P00027 Homo sapiens 1027 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
336
+ run_CondB_3 CondB 3 P00027 Homo sapiens 1027 0.001 PEPTIDER _PEPTIDER_ 2 FG1
337
+ run_CondB_3 CondB 3 P00027 Homo sapiens 1027 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
338
+ run_CondA_1 CondA 1 P00028 Saccharomyces cerevisiae 1028 0.001 PEPTIDER _PEPTIDER_ 2 FG1
339
+ run_CondA_1 CondA 1 P00028 Saccharomyces cerevisiae 1028 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
340
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341
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342
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343
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344
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345
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346
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347
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348
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349
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350
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351
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352
+ run_CondA_2 CondA 2 P00029 Escherichia coli 1029 0.001 PEPTIDER _PEPTIDER_ 2 FG1
353
+ run_CondA_2 CondA 2 P00029 Escherichia coli 1029 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
354
+ run_CondA_3 CondA 3 P00029 Escherichia coli 1029 0.001 PEPTIDER _PEPTIDER_ 2 FG1
355
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356
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357
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358
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359
+ run_CondB_2 CondB 2 P00029 Escherichia coli 1029 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
360
+ run_CondB_3 CondB 3 P00029 Escherichia coli 1029 0.001 PEPTIDER _PEPTIDER_ 2 FG1
361
+ run_CondB_3 CondB 3 P00029 Escherichia coli 1029 0.001 ANOTHERPEP _ANOTHERPEP_ 3 FG2
362
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363
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364
+ run_CondA_2 CondA 2 P00030 Homo sapiens 1030 0.001 PEPTIDER _PEPTIDER_ 2 FG1
365
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366
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367
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368
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369
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370
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371
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372
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373
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374
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375
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376
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377
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378
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379
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380
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381
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382
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383
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384
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385
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386
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387
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388
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389
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390
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391
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392
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393
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394
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395
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396
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397
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398
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399
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400
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401
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402
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403
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404
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405
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406
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407
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408
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409
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410
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411
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412
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413
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414
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415
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416
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417
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418
+ run_CondB_2 CondB 2 P00034 Saccharomyces cerevisiae 1034 0.001 PEPTIDER _PEPTIDER_ 2 FG1
419
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420
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421
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422
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425
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431
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432
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437
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438
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439
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440
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445
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446
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447
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448
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449
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450
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451
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453
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455
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456
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457
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459
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460
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461
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462
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463
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464
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465
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466
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467
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468
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469
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470
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471
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472
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473
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474
+ run_CondA_3 CondA 3 P70002 Saccharomyces cerevisiae 6500 Profiled PEPTIDER _PEPTIDER_ 2 FG1
475
+ run_CondA_3 CondA 3 P70002 Saccharomyces cerevisiae 6500 Profiled ANOTHERPEP _ANOTHERPEP_ 3 FG2
476
+ run_CondB_1 CondB 1 P70002 Saccharomyces cerevisiae 6500 Profiled PEPTIDER _PEPTIDER_ 2 FG1
477
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478
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479
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480
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481
+ run_CondB_3 CondB 3 P70002 Saccharomyces cerevisiae 6500 Profiled ANOTHERPEP _ANOTHERPEP_ 3 FG2
482
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483
+ run_CondA_1 CondA 1 P70003 Escherichia coli 6600 ANOTHERPEP _ANOTHERPEP_ 3 FG2
484
+ run_CondA_2 CondA 2 P70003 Escherichia coli 6600 PEPTIDER _PEPTIDER_ 2 FG1
485
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487
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488
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489
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491
+ run_CondB_2 CondB 2 P70003 Escherichia coli 6600 ANOTHERPEP _ANOTHERPEP_ 3 FG2
492
+ run_CondB_3 CondB 3 P70003 Escherichia coli 6600 PEPTIDER _PEPTIDER_ 2 FG1
493
+ run_CondB_3 CondB 3 P70003 Escherichia coli 6600 ANOTHERPEP _ANOTHERPEP_ 3 FG2
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+
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+ <!-- Footnote -->
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+ <text x="20" y="240" fill="#6b7785" font-size="11" font-style="italic">Each step sets a proteomics.* tag; the next is enabled only once its prerequisite tag is present — so the menu greys out steps that don't yet apply.</text>
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+ </svg>