@datagrok/peptides 1.9.1 → 1.9.2

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@datagrok/peptides",
   "friendlyName": "Peptides",
-  "version": "1.9.1",
+  "version": "1.9.2",
   "author": {
     "name": "Volodymyr Dyma",
     "email": "vdyma@datagrok.ai"
@@ -13,8 +13,8 @@
     "directory": "packages/Peptides"
   },
   "dependencies": {
-    "@datagrok-libraries/bio": "^5.29.3",
-    "@datagrok-libraries/ml": "^6.3.3",
+    "@datagrok-libraries/bio": "^5.30.3",
+    "@datagrok-libraries/ml": "^6.3.28",
     "@datagrok-libraries/statistics": "^1.1.7",
     "@datagrok-libraries/utils": "^4.0.7",
     "@datagrok-libraries/tutorials": "^1.3.2",
@@ -48,7 +48,7 @@
     "link-statistics": "npm link @datagrok-libraries/statistics",
     "link-ml": "npm link @datagrok-libraries/ml",
     "link-bio": "npm link @datagrok-libraries/bio",
-    "link-all": "npm link datagrok-api @datagrok-libraries/utils @datagrok-libraries/statistics link @datagrok-libraries/ml @datagrok-libraries/bio",
+    "link-all": "npm link datagrok-api @datagrok-libraries/utils @datagrok-libraries/statistics @datagrok-libraries/ml @datagrok-libraries/bio",
     "install-dependencies": "npm install",
     "debug-peptides": "grok publish",
     "release-peptides": "grok publish --release",

package/setup-unlink-clean.sh

@@ -0,0 +1,24 @@
+#!/bin/bash
+package_dir=$(pwd)
+
+GREEN='\e[0;32m'
+NO_COLOR='\e[0m'
+
+dirs=(
+  "../../js-api/"
+  "../../libraries/utils/"
+  "../../libraries/ml/"
+  "../../libraries/bio/"
+  "../../packages/Bio/"
+  "../../packages/Helm/"
+)
+
+npm uninstall --location=global datagrok-api @datagrok-libraries/utils @datagrok-libraries/ml @datagrok-libraries/bio
+
+for dir in ${dirs[@]}; do
+  cd $package_dir
+  cd $dir 
+  echo -e $GREEN Removing node_modules and dist in $(pwd) $NO_COLOR
+  rm -rf node_modules dist
+  # rm package-lock.json
+done

package/setup.sh

@@ -12,6 +12,8 @@ dirs=(
   "../../libraries/utils/"
   "../../libraries/ml/"
   "../../libraries/bio/"
+  "../../packages/Bio/"
+  "../../packages/Helm/"
 )
 
 for dir in ${dirs[@]}; do

package/src/model.ts

@@ -8,7 +8,7 @@ import {SeqPalette} from '@datagrok-libraries/bio/src/seq-palettes';
 import {MonomerWorks} from '@datagrok-libraries/bio/src/monomer-works/monomer-works';
 import {pickUpPalette, TAGS as bioTAGS} from '@datagrok-libraries/bio/src/utils/macromolecule';
 import {StringDictionary} from '@datagrok-libraries/utils/src/type-declarations';
-import {DistanceMatrix} from '@datagrok-libraries/bio/src/trees/distance-matrix';
+import {DistanceMatrix} from '@datagrok-libraries/ml/src/distance-matrix';
 import {StringMetricsNames} from '@datagrok-libraries/ml/src/typed-metrics';
 import {ITreeHelper} from '@datagrok-libraries/bio/src/trees/tree-helper';
 import {TAGS as treeTAGS} from '@datagrok-libraries/bio/src/trees';

package/src/utils/distance-matrix.worker.ts

@@ -1,4 +1,4 @@
-import {DistanceMatrix} from '@datagrok-libraries/bio/src/trees/distance-matrix';
+import {DistanceMatrix} from '@datagrok-libraries/ml/src/distance-matrix';
 import {stringDistanceMetricsMethods} from '@datagrok-libraries/ml/src/typed-metrics';
 
 const ctx: Worker = self as any;