@datagrok/peptides 1.4.0 → 1.5.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/package-test.js +1480 -1006
- package/dist/package.js +1252 -921
- package/dist/vendors-node_modules_datagrok-libraries_ml_src_workers_dimensionality-reducer_js.js +3 -3
- package/files/tests/aligned_5k.d42 +0 -0
- package/package.json +2 -2
- package/src/__jest__/remote.test.ts +12 -5
- package/src/__jest__/test-node.ts +1 -1
- package/src/model.ts +432 -479
- package/src/package-test.ts +1 -0
- package/src/package.ts +15 -14
- package/src/tests/algorithms.ts +29 -20
- package/src/tests/core.ts +3 -6
- package/src/tests/utils.ts +4 -4
- package/src/utils/algorithms.ts +25 -22
- package/src/utils/cell-renderer.ts +22 -16
- package/src/utils/constants.ts +3 -36
- package/src/utils/misc.ts +14 -15
- package/src/utils/peptide-similarity-space.ts +4 -7
- package/src/utils/statistics.ts +18 -9
- package/src/utils/types.ts +6 -0
- package/src/viewers/logo-summary.ts +108 -39
- package/src/viewers/peptide-space-viewer.ts +5 -5
- package/src/viewers/sar-viewer.ts +229 -56
- package/src/widgets/distribution.ts +35 -10
- package/src/widgets/manual-alignment.ts +1 -1
- package/src/widgets/mutation-cliffs.ts +2 -3
- package/src/widgets/peptides.ts +67 -36
- package/src/widgets/settings.ts +20 -16
- package/{test-Peptides-62cc009524f3-d4fc804f.html → test-Peptides-4775b69ad08a-1bc1a2b4.html} +33 -32
- package/tsconfig.json +3 -3
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Binary file
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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{
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"name": "@datagrok/peptides",
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-
"version": "1.
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+
"version": "1.5.1",
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"author": {
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"name": "Volodymyr Dyma",
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"email": "vdyma@datagrok.ai"
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@@ -15,7 +15,7 @@
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"@datagrok-libraries/bio": "^5.9.15",
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"@datagrok-libraries/ml": "^2.0.1",
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"@datagrok-libraries/statistics": "^0.1.6",
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"@datagrok-libraries/utils": "^1.
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"@datagrok-libraries/utils": "^1.16.1",
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"cash-dom": "latest",
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"datagrok-api": "^1.6.0",
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"file-loader": "^6.2.0",
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@@ -43,27 +43,34 @@ it('TEST', async () => {
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return new Promise<object>((resolve, reject) => {
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(<any>window).grok.functions.eval(targetPackage + ':test()').then((df: any) => {
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const cStatus = df.columns.byName('success');
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const cSkipped = df.columns.byName('skipped');
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const cMessage = df.columns.byName('result');
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const cCat = df.columns.byName('category');
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const cName = df.columns.byName('name');
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const cTime = df.columns.byName('ms');
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let failed = false;
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let skipReport = '';
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let passReport = '';
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let failReport = '';
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for (let i = 0; i < df.rowCount; i++) {
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if (cStatus.get(i))
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if (cStatus.get(i)) {
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if (cSkipped.get(i))
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skipReport += `Test result : Skipped : ${cTime.get(i)} : ${targetPackage}.${cCat.get(i)}.${cName.get(i)} : ${cMessage.get(i)}\n`;
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else
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passReport += `Test result : Success : ${cTime.get(i)} : ${targetPackage}.${cCat.get(i)}.${cName.get(i)} : ${cMessage.get(i)}\n`;
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} else {
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failed = true;
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failReport += `Test result : Failed : ${cTime.get(i)} : ${targetPackage}.${cCat.get(i)}.${cName.get(i)} : ${cMessage.get(i)}\n`;
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}
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}
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resolve({failReport, passReport, failed});
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resolve({failReport, skipReport, passReport, failed});
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}).catch((e: any) => reject(e));
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});
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}, targetPackage);
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// @ts-ignore
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console.log(r.passReport);
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// @ts-ignore
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console.log(r.skipReport);
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// @ts-ignore
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expect(r.failed).checkOutput(false, r.failReport);
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},
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}, 7200000);
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@@ -75,7 +75,7 @@ export async function getBrowserPage(puppeteer: any): Promise<{browser: any, pag
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}, token);
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await page.goto(url);
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try {
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await page.waitForSelector('.grok-preloader', {timeout: 1800000});
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// await page.waitForSelector('.grok-preloader', {timeout: 1800000});
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await page.waitForFunction(() => document.querySelector('.grok-preloader') == null, {timeout: 3600000});
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} catch (error) {
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throw error;
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