@datagrok/peptides 1.3.1 → 1.3.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/package-test.js +2403 -3185
- package/dist/package.js +2185 -3028
- package/dist/vendors-node_modules_datagrok-libraries_ml_src_workers_dimensionality-reducer_js.js +1673 -1673
- package/package.json +3 -3
- package/src/model.ts +4 -0
- package/{test-Peptides-8408d9b6ee67-ca232121.html → test-Peptides-916a90d7d48b-ea373bf5.html} +37 -7
package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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{
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"name": "@datagrok/peptides",
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"version": "1.3.
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"version": "1.3.2",
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"author": {
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"name": "Volodymyr Dyma",
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"email": "vdyma@datagrok.ai"
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@@ -12,10 +12,10 @@
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"directory": "packages/Peptides"
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},
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"dependencies": {
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"@datagrok-libraries/bio": "^
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"@datagrok-libraries/bio": "^5.0.0",
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"@datagrok-libraries/ml": "^2.0.1",
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"@datagrok-libraries/statistics": "^0.1.6",
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"@datagrok-libraries/utils": "^
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"@datagrok-libraries/utils": "^1.10.1",
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"cash-dom": "latest",
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"datagrok-api": "^1.6.0",
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"file-loader": "^6.2.0",
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package/src/model.ts
CHANGED
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@@ -452,6 +452,8 @@ export class PeptidesModel {
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ratioCol.set(i, stats.ratio);
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}
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const monomerCol = matrixDf.getCol(C.COLUMNS_NAMES.MONOMER);
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matrixDf = matrixDf.clone(DG.BitSet.create(matrixDf.rowCount, (i) => monomerCol.get(i) ? true : false));
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return matrixDf as DG.DataFrame;
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}
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@@ -916,6 +918,8 @@ export class PeptidesModel {
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initMonomerPositionSelection(aar: string, position: string, isInvariantMapSelection: boolean): void {
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const tempSelection = isInvariantMapSelection ? this.invariantMapSelection : this.mutationCliffsSelection;
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for (const key of Object.keys(tempSelection))
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tempSelection[key] = [];
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tempSelection[position] = [aar];
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if (isInvariantMapSelection)
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package/{test-Peptides-8408d9b6ee67-ca232121.html → test-Peptides-916a90d7d48b-ea373bf5.html}
RENAMED
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@@ -1,4 +1,4 @@
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<html><head><meta charset="utf-8"/><title>Peptides Test Report. Datagrok version datagrok/datagrok:latest SHA=
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<html><head><meta charset="utf-8"/><title>Peptides Test Report. Datagrok version datagrok/datagrok:latest SHA=916a90d7d48b. Commit ea373bf5.</title><style type="text/css">html,
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body {
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font-family: Arial, Helvetica, sans-serif;
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font-size: 1rem;
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@@ -229,11 +229,14 @@ header {
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font-size: 1rem;
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padding: 0 0.5rem;
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}
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</style></head><body><div id="jesthtml-content"><header><h1 id="title">Peptides Test Report. Datagrok version datagrok/datagrok:latest SHA=
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at
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</style></head><body><div id="jesthtml-content"><header><h1 id="title">Peptides Test Report. Datagrok version datagrok/datagrok:latest SHA=916a90d7d48b. Commit ea373bf5.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-10-13 13:02:52</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Peptides/src/__jest__/remote.test.ts</div><div class="suite-time warn">89.905s</div></div><div class="suite-tests"><div class="test-result failed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">failed</div><div class="test-duration">73.37s</div></div><div class="failureMessages"> <pre class="failureMsg">Error: Test result : Failed : 501 : Peptides.Core.Start analysis: simple : Unable to get project asset "getMonomerLib"
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Test result : Failed : 438 : Peptides.Core.Start analysis: сomplex : Unable to get project asset "getMonomerLib"
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Test result : Failed : 431 : Peptides.Core.Save and load project : Unable to get project asset "getMonomerLib"
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at /home/runner/work/public/public/packages/Peptides/src/__jest__/remote.test.ts:68:20
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at Generator.next (<anonymous>)
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at fulfilled (/home/runner/work/public/public/packages/Peptides/src/__jest__/remote.test.ts:31:58)
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at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.<anonymous> (/home/runner/work/public/public/packages/Peptides/src/__jest__/test-node.ts:62:11)
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at Generator.next (<anonymous>)
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at fulfilled (/home/runner/work/public/public/packages/Peptides/src/__jest__/test-node.ts:28:58)
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at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Using web root: http://localhost:8080</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Peptides/src/__jest__/remote.test.ts:40:11
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at Object.<anonymous>.__awaiter (/home/runner/work/public/public/packages/Peptides/src/__jest__/remote.test.ts:30:12)
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at Object.<anonymous> (/home/runner/work/public/public/packages/Peptides/src/__jest__/remote.test.ts:38:23)
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at Promise.then.completed (/home/runner/work/public/public/packages/Peptides/node_modules/jest-circus/build/utils.js:391:28)
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at new Promise (<anonymous>)</pre><pre class="suite-consolelog-item-message">Testing Peptides package</pre></div
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at new Promise (<anonymous>)</pre><pre class="suite-consolelog-item-message">Testing Peptides package</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Peptides/src/__jest__/remote.test.ts:66:11
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at Generator.next (<anonymous>)
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at fulfilled (/home/runner/work/public/public/packages/Peptides/src/__jest__/remote.test.ts:31:58)
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at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Test result : Success : 0 : Peptides.Peptide space.test_table.is_not_empty : OK
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Test result : Success : 6322 : Peptides.Peptide space.PeptideSimilaritySpaceWidget.is_drawing : OK
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Test result : Success : 2 : Peptides.Peptide space.test_deminsionality_reducer : OK
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Test result : Success : 1 : Peptides.Peptide space.test_peptide_similarity_space_viewer : OK
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Test result : Success : 4207 : Peptides.Peptide space.peptide_space.DimensinalityReducer.UMAP.Levenshtein.is_numeric : OK
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Test result : Success : 2954 : Peptides.Peptide space.peptide_space.DimensinalityReducer.UMAP.Jaro-Winkler.is_numeric : OK
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Test result : Success : 3304 : Peptides.Peptide space.peptide_space.DimensinalityReducer.t-SNE.Levenshtein.is_numeric : OK
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Test result : Success : 3696 : Peptides.Peptide space.peptide_space.DimensinalityReducer.t-SNE.Jaro-Winkler.is_numeric : OK
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Test result : Success : 199 : Peptides.Peptide space.peptide_space.DimensinalityReducer.SPE.Levenshtein.is_numeric : OK
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Test result : Success : 803 : Peptides.Peptide space.peptide_space.DimensinalityReducer.SPE.Jaro-Winkler.is_numeric : OK
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Test result : Success : 166 : Peptides.Peptide space.peptide_space.DimensinalityReducer.pSPE.Levenshtein.is_numeric : OK
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Test result : Success : 622 : Peptides.Peptide space.peptide_space.DimensinalityReducer.pSPE.Jaro-Winkler.is_numeric : OK
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Test result : Success : 7452 : Peptides.Peptide space.peptide_space.DimensinalityReducer.OriginalSPE.Levenshtein.is_numeric : OK
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Test result : Success : 8496 : Peptides.Peptide space.peptide_space.DimensinalityReducer.OriginalSPE.Jaro-Winkler.is_numeric : OK
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Test result : Success : 2071 : Peptides.Peptide space.peptide_space.PeptideSimilaritySpaceViewer.UMAP.Levenshtein.is_proper : OK
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Test result : Success : 2746 : Peptides.Peptide space.peptide_space.PeptideSimilaritySpaceViewer.UMAP.Jaro-Winkler.is_proper : OK
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Test result : Success : 3306 : Peptides.Peptide space.peptide_space.PeptideSimilaritySpaceViewer.t-SNE.Levenshtein.is_proper : OK
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Test result : Success : 4189 : Peptides.Peptide space.peptide_space.PeptideSimilaritySpaceViewer.t-SNE.Jaro-Winkler.is_proper : OK
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Test result : Success : 239 : Peptides.Peptide space.peptide_space.PeptideSimilaritySpaceViewer.SPE.Levenshtein.is_proper : OK
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Test result : Success : 732 : Peptides.Peptide space.peptide_space.PeptideSimilaritySpaceViewer.SPE.Jaro-Winkler.is_proper : OK
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Test result : Success : 347 : Peptides.Peptide space.peptide_space.PeptideSimilaritySpaceViewer.pSPE.Levenshtein.is_proper : OK
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Test result : Success : 659 : Peptides.Peptide space.peptide_space.PeptideSimilaritySpaceViewer.pSPE.Jaro-Winkler.is_proper : OK
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Test result : Success : 7587 : Peptides.Peptide space.peptide_space.PeptideSimilaritySpaceViewer.OriginalSPE.Levenshtein.is_proper : OK
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Test result : Success : 8158 : Peptides.Peptide space.peptide_space.PeptideSimilaritySpaceViewer.OriginalSPE.Jaro-Winkler.is_proper : OK
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</pre></div></div></div></div></body></html>
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