@datagrok/peptides 1.27.7 → 1.27.9

package/CHANGELOG.md

@@ -1,5 +1,18 @@
 # Peptides changelog
 
+## 1.27.4 - 1.27.7 (2026-03-20)
+
+### Features
+
+* [#3604](https://github.com/datagrok-ai/public/issues/3604): Migrated tags to roles
+* Variability Map: Added export functionality
+* SAR: Added extraction support
+* Multi Position Statistics: Introduced multi-position statistics viewer
+
+### Bug Fixes
+
+* SAR: Absent monomers are now filtered out
+
 ## 1.27.3 (2025-11-12)
 
 * Fix mutation cliffs viewer not updating on filter change

package/CLAUDE.md

@@ -1,23 +1,11 @@
 # CLAUDE.md
 
-This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.
-
-**IMPORTANT: Always update this CLAUDE.md file after finishing any task that adds, removes, or changes functionality in this package.**
-
 ## Overview
 
 **Peptides** (`@datagrok/peptides`) is a Datagrok plugin for **Structure-Activity Relationship (SAR) analysis** of peptide collections. It detects macromolecule columns automatically, renders amino acids with color-coded monomers, and provides interactive viewers to identify point mutations and residues causing major activity changes.
 
 Category: **Bioinformatics**. Top menu: `Bio | Analyze | SAR...`.
 
-## Build Commands
-
-```bash
-npm install
-npm run build              # grok api && grok check --soft && webpack
-npm run test               # grok test
-```
-
 ## Architecture
 
 ### Entry Point — `src/package.ts`

package/CREDITS.md

@@ -0,0 +1,74 @@
+# Peptides — Third-Party Libraries
+
+The `@datagrok/peptides` package is distributed under the MIT license that
+covers the rest of the `public/` repository (see
+[`../../LICENSE.md`](../../LICENSE.md)). It incorporates the open-source
+components listed below; this file reproduces the attribution and notices
+required by their respective licenses.
+
+All runtime dependencies bundled into the published artifact are under
+permissive licenses (MIT). No copyleft (GPL/LGPL/MPL) component is bundled
+into the published Peptides plugin.
+
+---
+
+## 1. Bundled in the published artifact (`dist/`)
+
+### uuid (10.x)
+
+RFC-compliant UUID generation, used to assign stable identifiers to
+clusters / mutation-cliff records and to namespace viewer settings.
+
+- Upstream: https://github.com/uuidjs/uuid
+- License: **MIT**
+
+```
+The MIT License (MIT)
+
+Copyright (c) 2010-2020 Robert Kieffer and other contributors
+
+Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+```
+
+---
+
+## 2. Linked at runtime via the Datagrok platform (webpack externals)
+
+These libraries are not bundled into Peptides' `dist/` — they are provided
+once by the platform host and shared across all packages.
+
+| Component | Version | License | Upstream                                |
+|-----------|---------|---------|-----------------------------------------|
+| cash-dom  | 8.x     | MIT     | https://github.com/fabiospampinato/cash |
+| RxJS      | 6.x     | Apache-2.0 | https://github.com/ReactiveX/rxjs    |
+| wu.js     | 2.x     | MIT     | https://github.com/fitzgen/wu.js        |
+
+---
+
+## 3. Fetched at runtime from third-party CDNs (not bundled)
+
+None.
+
+---
+
+## 4. Docker container images (`dockerfiles/`)
+
+None.
+
+---
+
+## 5. Development-only dependencies
+
+Tools used during the build/test cycle (not in the runtime tree, not bundled):
+the `datagrok-tools` CLI, the TypeScript / webpack toolchain, and `file-loader`
+(MIT, *Copyright JS Foundation and other contributors*) used by webpack at
+build time only. The peer/devDependencies on other Datagrok plugins
+(`@datagrok/bio`, `@datagrok/chem`, `@datagrok/dendrogram`, `@datagrok/eda`,
+`@datagrok/helm`) and on `@datagrok-libraries/helm-web-editor` /
+`@datagrok-libraries/js-draw-lite` are MIT — covered by the repo-wide
+`LICENSE.md`. These are **not** redistributed as part of the published
+Peptides plugin and impose no obligation on users of the plugin.