@datagrok/peptides 1.18.5 → 1.18.7

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@datagrok/peptides",
   "friendlyName": "Peptides",
-  "version": "1.18.5",
+  "version": "1.18.7",
   "author": {
     "name": "Davit Rizhinashvili",
     "email": "drizhinashvili@datagrok.ai"
@@ -14,18 +14,18 @@
   },
   "dependencies": {
     "@datagrok-libraries/bio": "^5.44.5",
-    "@datagrok-libraries/math": "^1.2.0",
-    "@datagrok-libraries/ml": "^6.7.1",
+    "@datagrok-libraries/math": "^1.2.3",
+    "@datagrok-libraries/ml": "^6.7.4",
     "@datagrok-libraries/statistics": "^1.2.12",
     "@datagrok-libraries/tutorials": "^1.4.2",
     "@datagrok-libraries/utils": "^4.3.0",
     "datagrok-api": "^1.21.1",
     "@webgpu/types": "^0.1.40",
-    "cash-dom": "latest",
-    "file-loader": "latest",
+    "cash-dom": "^8.1.5",
+    "file-loader": "^6.2.0",
     "rxjs": "^6.5.5",
-    "uuid": "latest",
-    "wu": "latest"
+    "uuid": "^10.0.0",
+    "wu": "^2.1.0"
   },
   "devDependencies": {
     "@datagrok-libraries/helm-web-editor": "^1.1.7",
@@ -34,18 +34,18 @@
     "@datagrok/chem": "^1.12.0",
     "@datagrok/dendrogram": "^1.2.33",
     "@datagrok/helm": "^2.5.0",
-    "@types/uuid": "latest",
-    "@types/wu": "latest",
-    "@typescript-eslint/eslint-plugin": "latest",
-    "@typescript-eslint/parser": "latest",
-    "css-loader": "latest",
-    "eslint": "latest",
-    "eslint-config-google": "latest",
-    "style-loader": "latest",
-    "ts-loader": "latest",
-    "typescript": "latest",
-    "webpack": "latest",
-    "webpack-cli": "latest"
+    "@types/uuid": "^10.0.0",
+    "@types/wu": "^2.1.44",
+    "@typescript-eslint/eslint-plugin": "^8.8.1",
+    "@typescript-eslint/parser": "^8.8.1",
+    "css-loader": "^7.1.2",
+    "eslint": "^8.57.1",
+    "eslint-config-google": "^0.14.0",
+    "style-loader": "^4.0.0",
+    "ts-loader": "^9.5.1",
+    "typescript": "^5.6.3",
+    "webpack": "^5.95.0",
+    "webpack-cli": "^5.1.4"
   },
   "scripts": {
     "link-api": "npm link datagrok-api",
@@ -79,4 +79,4 @@
     "All users"
   ],
   "category": "Bioinformatics"
-}
+}

package/src/global.d.ts

@@ -0,0 +1,13 @@
+import * as grokNamespace from 'datagrok-api/grok';
+import * as uiNamespace from 'datagrok-api/ui';
+import * as DGNamespace from 'datagrok-api/dg';
+import * as rxjsNamespace from 'rxjs';
+import $Namespace from 'cash-dom';
+
+declare global {
+    const grok: typeof grokNamespace;
+    const ui: typeof uiNamespace;
+    const DG: typeof DGNamespace;
+    const rjxs: typeof rxjsNamespace;
+    const $: typeof $Namespace;
+}

package/src/package.ts

@@ -85,7 +85,11 @@ export function Peptides(): DG.View {
 
 //top-menu: Bio | Analyze | SAR...
 //name: Bio Peptides
-export function peptidesDialog(): DG.Dialog {
+export function peptidesDialog(): DG.Dialog | null {
+  if (!grok.shell.t || !grok.shell.t.columns.bySemType('Macromolecule')?.length) {
+    grok.shell.warning('SAR Analysis requires an active table with Macromolecule column');
+    return null;
+  }
   const analyzeObject = analyzePeptidesUI(grok.shell.t);
   const dialog = ui.dialog('Analyze Peptides').add(analyzeObject.host).onOK(async () => {
     const startSuccess = analyzeObject.callback();

package/src/viewers/logo-summary.ts

@@ -269,7 +269,8 @@ export class LogoSummaryTable extends DG.JsViewer implements ILogoSummaryTable {
     this._scaledActivityColumn ??= scaleActivity(this.dataFrame.getCol(this.activityColumnName),
       this.activityScaling);
     if (isFiltered) {
-      return DG.DataFrame.fromColumns([this._scaledActivityColumn]).clone(this.dataFrame.filter)
+      return DG.DataFrame.fromColumns([this._scaledActivityColumn])
+        .clone(this.dataFrame.rowCount === this._scaledActivityColumn.length ? this.dataFrame.filter : null)
         .getCol(this._scaledActivityColumn.name) as DG.Column<number>;
     }
     return this._scaledActivityColumn as DG.Column<number>;