@datagrok/peptides 1.18.3 → 1.18.5

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@datagrok/peptides",
   "friendlyName": "Peptides",
-  "version": "1.18.3",
+  "version": "1.18.5",
   "author": {
     "name": "Davit Rizhinashvili",
     "email": "drizhinashvili@datagrok.ai"
@@ -13,11 +13,11 @@
     "directory": "packages/Peptides"
   },
   "dependencies": {
-    "@datagrok-libraries/bio": "^5.43.1",
+    "@datagrok-libraries/bio": "^5.44.5",
     "@datagrok-libraries/math": "^1.2.0",
     "@datagrok-libraries/ml": "^6.7.1",
     "@datagrok-libraries/statistics": "^1.2.12",
-    "@datagrok-libraries/tutorials": "^1.4.0",
+    "@datagrok-libraries/tutorials": "^1.4.2",
     "@datagrok-libraries/utils": "^4.3.0",
     "datagrok-api": "^1.21.1",
     "@webgpu/types": "^0.1.40",

package/src/model.ts

@@ -47,7 +47,6 @@ import {MmDistanceFunctionsNames}
 import {ITSNEOptions, IUMAPOptions}
   from '@datagrok-libraries/ml/src/multi-column-dimensionality-reduction/multi-column-dim-reducer';
 import {DimReductionMethods} from '@datagrok-libraries/ml/src/multi-column-dimensionality-reduction/types';
-import {showMonomerTooltip} from './utils/tooltips';
 import {AggregationColumns, MonomerPositionStats} from './utils/statistics';
 import {splitAlignedSequences} from '@datagrok-libraries/bio/src/utils/splitter';
 import {getDbscanWorker} from '@datagrok-libraries/math';
@@ -743,8 +742,6 @@ export class PeptidesModel {
       if (!(cell.isTableCell && cell.tableColumn?.semType === C.SEM_TYPES.MONOMER))
         return false;
 
-
-      showMonomerTooltip(cell.cell.value, x, y);
       return true;
     });
   }

package/src/tests/table-view.ts

@@ -8,7 +8,6 @@ import {initSelection, scaleActivity} from '../utils/misc';
 import {NOTATION} from '@datagrok-libraries/bio/src/utils/macromolecule';
 import {COLUMNS_NAMES, SCALING_METHODS} from '../utils/constants';
 import {TEST_COLUMN_NAMES} from './utils';
-import {showMonomerTooltip} from '../utils/tooltips';
 import {CLUSTER_TYPE, LogoSummaryTable} from '../viewers/logo-summary';
 import {MonomerPosition} from '../viewers/sar-viewer';
 
@@ -44,11 +43,6 @@ category('Table view', () => {
 
   after(async () => await delay(3000));
 
-  test('Tooltip', async () => {
-    expect(showMonomerTooltip(firstPair.monomerOrCluster, 0, 0), true,
-      `Couldn't structure for monomer ${firstPair.monomerOrCluster}`);
-  }, {skipReason: 'Need to find a way to replace _package variable to call for Bio function with tests'});
-
   test('Visible columns', async () => {
     const gridCols = model.analysisView.grid.columns;
     const posCols = model.positionColumns!.map((col) => col.name);

package/src/utils/tooltips.ts

@@ -7,7 +7,6 @@ import * as C from '../utils/constants';
 
 import {getActivityDistribution, getStatsTableMap} from '../widgets/distribution';
 import {getDistributionPanel, getDistributionTable} from './misc';
-import {getMonomerWorksInstance} from '../package';
 import {getAggregatedColumnValues, MonomerPositionStats} from './statistics';
 import {StringDictionary} from '@datagrok-libraries/utils/src/type-declarations';
 
@@ -17,33 +16,6 @@ export type TooltipOptions = {
   isMostPotentResidues?: boolean, cliffStats?: type.MutationCliffStats['stats']
 };
 
-/**
- * Shows monomer tooltip at the given coordinates.
- * @param monomer - Monomer symbol.
- * @param x - X coordinate.
- * @param y - Y coordinate.
- * @return - Flag if the tooltip is shown.
- */
-export function showMonomerTooltip(monomer: string, x: number, y: number): boolean {
-  const tooltipElements: HTMLDivElement[] = [];
-  const monomerName = monomer.toLowerCase();
-  const mw = getMonomerWorksInstance();
-  const mol = mw?.getCappedRotatedMonomer('PEPTIDE', monomer);
-
-  if (mol) {
-    tooltipElements.push(ui.div(monomerName));
-    const options = {autoCrop: true, autoCropMargin: 0, suppressChiralText: true};
-    tooltipElements.push(grok.chem.svgMol(mol, undefined, undefined, options));
-  } else if (monomer !== '')
-    tooltipElements.push(ui.div(monomer));
-  else
-    return true;
-
-
-  ui.tooltip.show(ui.divV(tooltipElements), x, y);
-  return true;
-}
-
 /**
  * Shows tooltip at the given coordinates.
  * @param df - Dataframe to show tooltip at.
@@ -57,9 +29,7 @@ export function showTooltip(df: DG.DataFrame, activityCol: DG.Column<number>, co
   options.fromViewer ??= false;
   options.isMutationCliffs ??= false;
   options.isMostPotentResidues ??= false;
-  if (options.monomerPosition.positionOrClusterType === C.COLUMNS_NAMES.MONOMER)
-    showMonomerTooltip(options.monomerPosition.monomerOrCluster, options.x, options.y);
-  else
+  if (options.monomerPosition.positionOrClusterType !== C.COLUMNS_NAMES.MONOMER)
     showTooltipAt(df, activityCol, columns, options);
 
 

package/src/viewers/sar-viewer.ts

@@ -1478,6 +1478,5 @@ function setViewerGridProps(grid: DG.Grid): void {
   gridProps.showRowHeader = false;
   gridProps.showCurrentRowIndicator = false;
   gridProps.showReadOnlyNotifications = false;
-
   gridProps.rowHeight = 20;
 }