@datagrok/peptides 1.17.21 → 1.17.23

package/src/widgets/distribution.ts

@@ -118,17 +118,18 @@ export function getActivityDistribution(
  * @param options.fractionDigits - Number of fraction digits for stats values
  * @return - Stats table map
  */
-export function getStatsTableMap(stats: StatsItem, options: { fractionDigits?: number } = {}): StringDictionary {
+export function getStatsTableMap(stats: StatsItem,
+  options: { fractionDigits?: number } = {},
+): StringDictionary {
   options.fractionDigits ??= 3;
   const tableMap: StringDictionary = {
-    'Count': `${stats.count} (${stats.ratio.toFixed(options.fractionDigits)}%)`,
+    'Count': `${stats.count} (${(stats.ratio * 100).toFixed(options.fractionDigits)}%)`,
     'Mean difference': stats.meanDifference.toFixed(options.fractionDigits),
     'Mean activity': stats.mean.toFixed(options.fractionDigits),
   };
-  if (stats.pValue !== null)
+  if (stats.pValue != null)
     tableMap['p-value'] = stats.pValue < 0.01 ? '<0.01' : stats.pValue.toFixed(options.fractionDigits);
 
-
   return tableMap;
 }
 

package/src/widgets/mutation-cliffs.ts

@@ -243,6 +243,9 @@ function cliffsPairsWidgetParts(table: DG.DataFrame, options: MutationCliffsOpti
     pairsGrid.root.style.setProperty('width', '100%');
     uniqueSequencesGrid.root.style.removeProperty('width');
     uniqueSequencesGrid.root.style.setProperty('width', '100%');
+    pairsGrid.root.style.minHeight = '250px';
+    uniqueSequencesGrid.root.style.minHeight = '250px';
   }, 200);
+
   return {pairsGrid, uniqueSequencesGrid, aminoToInput};
 }

package/src/widgets/settings.ts

@@ -1,3 +1,4 @@
+/* eslint-disable max-len */
 import * as ui from 'datagrok-api/ui';
 import * as grok from 'datagrok-api/grok';
 import * as DG from 'datagrok-api/dg';
@@ -11,7 +12,7 @@ import wu from 'wu';
 import {getTreeHelperInstance} from '../package';
 import {
   MmDistanceFunctionsNames,
-  MmDistanceFunctionsNames as distFNames
+  MmDistanceFunctionsNames as distFNames,
 } from '@datagrok-libraries/ml/src/macromolecule-distance-functions';
 
 type PaneInputs = { [paneName: string]: DG.InputBase[] };
@@ -130,7 +131,7 @@ export function getSettingsDialog(model: PeptidesModel): SettingsElements {
       }
       if (result.showSequenceSpace === settings?.showSequenceSpace)
         delete result.showSequenceSpace;
-  }});
+    }});
   clusterMaxActivity.setTooltip('Show cluster max activity viewer');
   dendrogram.setTooltip('Show dendrogram viewer');
   dendrogram.enabled = getTreeHelperInstance() !== null;
@@ -215,7 +216,7 @@ export function getSettingsDialog(model: PeptidesModel): SettingsElements {
   // SEQ SPACE INPUTS
   const distanceFunctionInput: DG.ChoiceInput<MmDistanceFunctionsNames> = ui.input.choice(SEQUENCE_SPACE_INPUTS.DISTANCE_FUNCTION,
     {value: seqSpaceParams.distanceF, items: [distFNames.NEEDLEMANN_WUNSCH, distFNames.HAMMING, distFNames.LEVENSHTEIN, distFNames.MONOMER_CHEMICAL_DISTANCE],
-    onValueChanged: () => onSeqSpaceParamsChange('distanceF', distanceFunctionInput.value)}) as DG.ChoiceInput<MmDistanceFunctionsNames>
+      onValueChanged: () => onSeqSpaceParamsChange('distanceF', distanceFunctionInput.value)}) as DG.ChoiceInput<MmDistanceFunctionsNames>;
   distanceFunctionInput.setTooltip('Distance function for sequences');
   const gapOpenInput = ui.input.float(SEQUENCE_SPACE_INPUTS.GAP_OPEN, {value: seqSpaceParams.gapOpen,
     onValueChanged: () => onSeqSpaceParamsChange('gapOpen', gapOpenInput.value)});
@@ -276,7 +277,7 @@ export function getSettingsDialog(model: PeptidesModel): SettingsElements {
 
   const mclDistanceFunctionInput: DG.ChoiceInput<MmDistanceFunctionsNames> = ui.input.choice(MCL_INPUTS.DISTANCE_FUNCTION,
     {value: mclParams.distanceF, items: [distFNames.NEEDLEMANN_WUNSCH, distFNames.MONOMER_CHEMICAL_DISTANCE, distFNames.HAMMING, distFNames.LEVENSHTEIN],
-    onValueChanged: () => onMCLParamsChange('distanceF', mclDistanceFunctionInput.value)}) as DG.ChoiceInput<MmDistanceFunctionsNames>;
+      onValueChanged: () => onMCLParamsChange('distanceF', mclDistanceFunctionInput.value)}) as DG.ChoiceInput<MmDistanceFunctionsNames>;
   const mclGapOpenInput = ui.input.float(MCL_INPUTS.GAP_OPEN, {value: mclParams.gapOpen,
     onValueChanged: () => onMCLParamsChange('gapOpen', mclGapOpenInput.value)});
   const mclGapExtendInput = ui.input.float(MCL_INPUTS.GAP_EXTEND, {value: mclParams.gapExtend,

package/tsconfig.json

@@ -12,7 +12,7 @@
     // "jsx": "preserve",                           /* Specify JSX code generation: 'preserve', 'react-native', 'react', 'react-jsx' or 'react-jsxdev'. */
     // "declaration": true,                         /* Generates corresponding '.d.ts' file. */
     // "declarationMap": true,                      /* Generates a sourcemap for each corresponding '.d.ts' file. */
-    // "sourceMap": true,                           /* Generates corresponding '.map' file. */
+     "sourceMap": true,                           /* Generates corresponding '.map' file. */
     // "outFile": "./",                             /* Concatenate and emit output to single file. */
     // "outDir": "./",                              /* Redirect output structure to the directory. */
     // "rootDir": "./",                             /* Specify the root directory of input files. Use to control the output directory structure with --outDir. */
@@ -57,8 +57,8 @@
     /* Source Map Options */
     "sourceRoot": "",                            /* Specify the location where debugger should locate TypeScript files instead of source locations. */
     "mapRoot": "",                               /* Specify the location where debugger should locate map files instead of generated locations. */
-    "inlineSourceMap": true,                     /* Emit a single file with source maps instead of having a separate file. */
-    "inlineSources": true,                       /* Emit the source alongside the sourcemaps within a single file; requires '--inlineSourceMap' or '--sourceMap' to be set. */
+//    "inlineSourceMap": true,                     /* Emit a single file with source maps instead of having a separate file. */
+//    "inlineSources": true,                       /* Emit the source alongside the sourcemaps within a single file; requires '--inlineSourceMap' or '--sourceMap' to be set. */
 
     /* Experimental Options */
     // "experimentalDecorators": true,              /* Enables experimental support for ES7 decorators. */

package/webpack.config.js

@@ -34,7 +34,7 @@ module.exports = {
   resolve: {
     extensions: ['.mjs', '.ts', '.js', '.json', '.tsx'],
   },
-  devtool: 'inline-source-map',
+  devtool: 'source-map',
   externals: {
     'datagrok-api/dg': 'DG',
     'datagrok-api/grok': 'grok',