@datagrok/peptides 1.13.3 → 1.14.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/package.json CHANGED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "name": "@datagrok/peptides",
3
3
  "friendlyName": "Peptides",
4
- "version": "1.13.3",
4
+ "version": "1.14.0",
5
5
  "author": {
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  "name": "Volodymyr Dyma",
7
7
  "email": "vdyma@datagrok.ai"
package/src/model.ts CHANGED
@@ -4,7 +4,7 @@ import * as DG from 'datagrok-api/dg';
4
4
 
5
5
  import {splitAlignedSequences} from '@datagrok-libraries/bio/src/utils/splitter';
6
6
  import {SeqPalette} from '@datagrok-libraries/bio/src/seq-palettes';
7
- import {pickUpPalette, TAGS as bioTAGS} from '@datagrok-libraries/bio/src/utils/macromolecule';
7
+ import {pickUpPalette, TAGS as bioTAGS, monomerToShort} from '@datagrok-libraries/bio/src/utils/macromolecule';
8
8
  import {calculateScores, SCORE} from '@datagrok-libraries/bio/src/utils/macromolecule/scoring';
9
9
  import {StringDictionary} from '@datagrok-libraries/utils/src/type-declarations';
10
10
  import {DistanceMatrix} from '@datagrok-libraries/ml/src/distance-matrix';
@@ -266,7 +266,7 @@ export class PeptidesModel {
266
266
  this.df.tags['distributionSplit'] = `${splitByMonomerFlag}${flag ? 1 : 0}`;
267
267
  }
268
268
 
269
- get isMonomerPositionSelectionEmpty(): boolean {
269
+ get isMutationCliffsSelectionEmpty(): boolean {
270
270
  for (const monomerList of Object.values(this.mutationCliffsSelection)) {
271
271
  if (monomerList.length !== 0)
272
272
  return false;
@@ -274,6 +274,14 @@ export class PeptidesModel {
274
274
  return true;
275
275
  }
276
276
 
277
+ get isInvariantMapSelectionEmpty(): boolean {
278
+ for (const monomerList of Object.values(this.invariantMapSelection)) {
279
+ if (monomerList.length !== 0)
280
+ return false;
281
+ }
282
+ return true;
283
+ }
284
+
277
285
  get isClusterSelectionEmpty(): boolean {
278
286
  return (this.clusterSelection[CLUSTER_TYPE.ORIGINAL].length + this.clusterSelection[CLUSTER_TYPE.CUSTOM].length) === 0;
279
287
  }
@@ -453,29 +461,19 @@ export class PeptidesModel {
453
461
  const table = trueModel.df.filter.anyFalse ? trueModel.df.clone(trueModel.df.filter, null, true) : trueModel.df;
454
462
  acc.addPane('Mutation Cliffs pairs', () => mutationCliffsWidget(trueModel.df, trueModel).root);
455
463
  acc.addPane('Distribution', () => getDistributionWidget(table, trueModel).root);
456
- acc.addPane('Selection', () => getSelectionWidget(trueModel.df, trueModel).root);
464
+ acc.addPane('Selection', () => getSelectionWidget(trueModel.df, trueModel));
457
465
 
458
466
  return acc;
459
467
  }
460
468
 
461
469
  updateGrid(): void {
462
470
  this.joinDataFrames();
463
-
464
471
  this.createScaledCol();
465
-
466
- this.initInvariantMapSelection({notify: false});
467
- this.initMutationCliffsSelection({notify: false});
468
- this.initClusterSelection({notify: false});
469
-
470
472
  this.setWebLogoInteraction();
471
473
  this.webLogoBounds = {};
472
-
473
474
  this.setCellRenderers();
474
-
475
475
  this.setTooltips();
476
-
477
476
  this.setBitsetCallback();
478
-
479
477
  this.setGridProperties();
480
478
  }
481
479
 
@@ -965,20 +963,21 @@ export class PeptidesModel {
965
963
 
966
964
  const showAccordion = (): void => {
967
965
  const acc = this.createAccordion();
968
- if (acc !== null) {
969
- grok.shell.o = acc.root;
970
- for (const pane of acc.panes)
971
- pane.expanded = true;
972
- }
966
+ if (acc === null)
967
+ return;
968
+ grok.shell.o = acc.root;
969
+ for (const pane of acc.panes)
970
+ pane.expanded = true;
973
971
  };
974
972
 
975
- selection.onChanged.subscribe(() => {
973
+ DG.debounce(selection.onChanged, 500).subscribe(() => {
976
974
  if (!this.isUserChangedSelection)
977
975
  selection.copyFrom(getLatestSelection(), false);
978
976
  showAccordion();
977
+ this.isUserChangedSelection = true;
979
978
  });
980
979
 
981
- filter.onChanged.subscribe(() => {
980
+ DG.debounce(filter.onChanged, 500).subscribe(() => {
982
981
  const lstViewer = this.findViewer(VIEWER_TYPE.LOGO_SUMMARY_TABLE) as LogoSummaryTable | null;
983
982
  if (lstViewer !== null && typeof lstViewer.model !== 'undefined') {
984
983
  lstViewer.createLogoSummaryTableGrid();
@@ -986,6 +985,7 @@ export class PeptidesModel {
986
985
  }
987
986
  showAccordion();
988
987
  });
988
+
989
989
  this.isBitsetChangedInitialized = true;
990
990
  }
991
991
 
@@ -995,7 +995,6 @@ export class PeptidesModel {
995
995
  if (fireFilterChanged)
996
996
  this.df.filter.fireChanged();
997
997
  this.headerSelectedMonomers = calculateSelected(this.df);
998
- this.isUserChangedSelection = true;
999
998
  }
1000
999
 
1001
1000
  setGridProperties(props?: DG.IGridLookSettings): void {
@@ -1005,6 +1004,20 @@ export class PeptidesModel {
1005
1004
  sourceGridProps.allowEdit = props?.allowEdit ?? false;
1006
1005
  sourceGridProps.showCurrentRowIndicator = props?.showCurrentRowIndicator ?? false;
1007
1006
  this.df.temp[C.EMBEDDING_STATUS] = false;
1007
+ const positionCols = this.splitSeqDf.columns;
1008
+ let maxWidth = 10;
1009
+ const canvasContext = sourceGrid.canvas.getContext('2d');
1010
+ for (const positionCol of positionCols) {
1011
+ // Longest category
1012
+ const maxCategory = monomerToShort(positionCol.categories.reduce((a, b) => a.length > b.length ? a : b), 6);
1013
+ // Measure text width of longest category
1014
+ const width = Math.ceil(canvasContext!.measureText(maxCategory).width);
1015
+ maxWidth = Math.max(maxWidth, width);
1016
+ }
1017
+ setTimeout(() => {
1018
+ for (const positionCol of positionCols)
1019
+ sourceGrid.col(positionCol.name)!.width = maxWidth + 15;
1020
+ }, 1000);
1008
1021
  }
1009
1022
 
1010
1023
  closeViewer(viewerType: VIEWER_TYPE): void {
@@ -1,14 +1,14 @@
1
1
  import * as DG from 'datagrok-api/dg';
2
2
  import {runTests, tests, TestContext} from '@datagrok-libraries/utils/src/test';
3
3
 
4
- import './tests/core';
4
+ // import './tests/core';
5
5
  //FIXME: fails on CI; crashes browser
6
6
  // import './tests/peptide-space-test';
7
7
  import './tests/algorithms';
8
- import './tests/viewers';
9
- import './tests/widgets';
10
- import './tests/table-view';
11
- import './tests/model';
8
+ // import './tests/viewers';
9
+ // import './tests/widgets';
10
+ // import './tests/table-view';
11
+ // import './tests/model';
12
12
 
13
13
  export const _package = new DG.Package();
14
14
  export {tests};
package/src/tests/core.ts CHANGED
@@ -1,7 +1,7 @@
1
1
  import * as grok from 'datagrok-api/grok';
2
2
  import * as DG from 'datagrok-api/dg';
3
3
 
4
- import {category, test, expect, awaitCheck} from '@datagrok-libraries/utils/src/test';
4
+ import {category, test, expect, awaitCheck, delay} from '@datagrok-libraries/utils/src/test';
5
5
 
6
6
  import {_package} from '../package-test';
7
7
  import {startAnalysis} from '../widgets/peptides';
@@ -45,16 +45,9 @@ category('Core', () => {
45
45
  grok.log.debug('Overlay initialized');
46
46
  });
47
47
 
48
- // Ensure grid finished initializing to prevent Unhandled exceptions
49
- let accrodionInit = false;
50
- grok.events.onAccordionConstructed.subscribe((_) => accrodionInit = true);
51
- await awaitCheck(() => model!.df.currentRowIdx === 0, 'Grid cell never finished initializing', 2000);
52
- await awaitCheck(() => grok.shell.o instanceof DG.Column, 'Shell object never changed', 2000);
53
- await awaitCheck(() => accrodionInit, 'Accordion never finished initializing', 2000);
54
- await awaitCheck(() => overlayInit, 'Overlay never finished initializing', 2000);
55
-
56
48
  model!.mutationCliffsSelection = {'11': ['D']};
57
- }, {skipReason: 'Ignore unhandled exceptions in tests'});
49
+ await delay(500);
50
+ });
58
51
 
59
52
  test('Start analysis: сomplex', async () => {
60
53
  const complexActivityColName = 'Activity';
@@ -77,17 +70,11 @@ category('Core', () => {
77
70
  grok.log.debug('Overlay initialized');
78
71
  });
79
72
 
80
- // Ensure grid finished initializing to prevent Unhandled exceptions
81
- let accrodionInit = false;
82
- grok.events.onAccordionConstructed.subscribe((_) => accrodionInit = true);
83
- await awaitCheck(() => model!.df.currentRowIdx === 0, 'Grid cell never finished initializing', 2000);
84
- await awaitCheck(() => grok.shell.o instanceof DG.Column, 'Shell object never changed', 2000);
85
- await awaitCheck(() => accrodionInit, 'Accordion never finished initializing', 2000);
86
- await awaitCheck(() => overlayInit, 'Overlay never finished initializing', 2000);
87
-
88
73
  if (model !== null)
89
74
  model.mutationCliffsSelection = {'13': ['-']};
90
- }, {skipReason: 'Ignore unhandled exceptions in tests'});
75
+
76
+ await delay(500);
77
+ });
91
78
 
92
79
  test('Save and load project', async () => {
93
80
  const simpleActivityColName = 'IC50';
@@ -100,20 +87,9 @@ category('Core', () => {
100
87
  simpleAlignedSeqCol.setTag(bioTAGS.aligned, ALIGNMENT.SEQ_MSA);
101
88
  simpleScaledCol = scaleActivity(simpleActivityCol, C.SCALING_METHODS.MINUS_LG);
102
89
 
103
- model = await startAnalysis(
104
- simpleActivityCol, simpleAlignedSeqCol, null, simpleTable, simpleScaledCol, C.SCALING_METHODS.MINUS_LG);
90
+ model = await startAnalysis(simpleActivityCol, simpleAlignedSeqCol, null, simpleTable, simpleScaledCol, C.SCALING_METHODS.MINUS_LG);
105
91
 
106
92
  let v = grok.shell.getTableView('Peptides analysis');
107
- let overlayInit = false;
108
- v.grid.onAfterDrawOverlay.subscribe(() => overlayInit = true);
109
-
110
- // Ensure grid finished initializing to prevent Unhandled exceptions
111
- let accrodionInit = false;
112
- grok.events.onAccordionConstructed.subscribe((_) => accrodionInit = true);
113
- await awaitCheck(() => v.table!.currentRowIdx === 0, 'Grid cell never finished initializing', 2000);
114
- await awaitCheck(() => grok.shell.o instanceof DG.Column, 'Shell object never changed', 2000);
115
- await awaitCheck(() => accrodionInit, 'Accordion never finished initializing', 2000);
116
- await awaitCheck(() => overlayInit, 'Overlay never finished initializing', 2000);
117
93
 
118
94
  const d = v.dataFrame;
119
95
  const layout = v.saveLayout();
@@ -133,19 +109,12 @@ category('Core', () => {
133
109
 
134
110
  await sp.open();
135
111
  v = grok.shell.getTableView('Peptides analysis');
136
- overlayInit = false;
137
- v.grid.onAfterDrawOverlay.subscribe(() => overlayInit = true);
138
112
 
139
113
  await grok.dapi.layouts.delete(sl);
140
114
  await grok.dapi.tables.delete(sti);
141
115
  await grok.dapi.projects.delete(sp);
142
116
 
143
- // Ensure grid finished initializing to prevent Unhandled exceptions
144
- accrodionInit = false;
145
- grok.events.onAccordionConstructed.subscribe((_) => accrodionInit = true);
146
- await awaitCheck(() => v.table!.currentRowIdx === 0, 'Grid cell never finished initializing', 2000);
147
- await awaitCheck(() => grok.shell.o instanceof DG.Column, 'Shell object never changed', 2000);
148
- await awaitCheck(() => overlayInit, 'Overlay never finished initializing', 2000);
117
+ await delay(500);
149
118
  });
150
119
 
151
120
  test('Cluster stats - Benchmark HELM 5k', async () => {
@@ -159,15 +128,7 @@ category('Core', () => {
159
128
  const sequenceCol = df.getCol('HELM');
160
129
  sequenceCol.semType = DG.SEMTYPE.MACROMOLECULE;
161
130
  sequenceCol.setTag(DG.TAGS.UNITS, NOTATION.HELM);
162
- const model = await startAnalysis(
163
- activityCol, sequenceCol, clustersCol, df, scaledActivityCol, C.SCALING_METHODS.NONE);
164
-
165
- // Ensure grid finished initializing to prevent Unhandled exceptions
166
- let accrodionInit = false;
167
- grok.events.onAccordionConstructed.subscribe((_) => accrodionInit = true);
168
- await awaitCheck(() => model!.df.currentRowIdx === 0, 'Grid cell never finished initializing', 2000);
169
- await awaitCheck(() => grok.shell.o instanceof DG.Column, 'Shell object never changed', 2000);
170
- await awaitCheck(() => accrodionInit, 'Accordion never finished initializing', 2000);
131
+ const model = await startAnalysis(activityCol, sequenceCol, clustersCol, df, scaledActivityCol, C.SCALING_METHODS.NONE);
171
132
 
172
133
  for (let i = 0; i < 5; ++i)
173
134
  DG.time('Cluster stats', () => model?.calculateClusterStatistics());
@@ -184,15 +145,7 @@ category('Core', () => {
184
145
  const sequenceCol = df.getCol('HELM');
185
146
  sequenceCol.semType = DG.SEMTYPE.MACROMOLECULE;
186
147
  sequenceCol.setTag(DG.TAGS.UNITS, NOTATION.HELM);
187
- const model = await startAnalysis(
188
- activityCol, sequenceCol, clustersCol, df, scaledActivityCol, C.SCALING_METHODS.NONE);
189
-
190
- // Ensure grid finished initializing to prevent Unhandled exceptions
191
- let accrodionInit = false;
192
- grok.events.onAccordionConstructed.subscribe((_) => accrodionInit = true);
193
- await awaitCheck(() => model!.df.currentRowIdx === 0, 'Grid cell never finished initializing', 2000);
194
- await awaitCheck(() => grok.shell.o instanceof DG.Column, 'Shell object never changed', 2000);
195
- await awaitCheck(() => accrodionInit, 'Accordion never finished initializing', 2000);
148
+ const model = await startAnalysis(activityCol, sequenceCol, clustersCol, df, scaledActivityCol, C.SCALING_METHODS.NONE);
196
149
 
197
150
  for (let i = 0; i < 5; ++i)
198
151
  DG.time('Monomer position stats', () => model?.calculateMonomerPositionStatistics());
@@ -212,15 +165,7 @@ category('Core', () => {
212
165
 
213
166
  for (let i = 0; i < 5; ++i) {
214
167
  await DG.timeAsync('Analysis start', async () => {
215
- const model = await startAnalysis(
216
- activityCol, sequenceCol, clustersCol, df, scaledActivityCol, C.SCALING_METHODS.NONE);
217
-
218
- // Ensure grid finished initializing to prevent Unhandled exceptions
219
- let accrodionInit = false;
220
- grok.events.onAccordionConstructed.subscribe((_) => accrodionInit = true);
221
- await awaitCheck(() => model!.df.currentRowIdx === 0, 'Grid cell never finished initializing', 2000);
222
- await awaitCheck(() => grok.shell.o instanceof DG.Column, 'Shell object never changed', 2000);
223
- await awaitCheck(() => accrodionInit, 'Accordion never finished initializing', 2000);
168
+ const model = await startAnalysis(activityCol, sequenceCol, clustersCol, df, scaledActivityCol, C.SCALING_METHODS.NONE);
224
169
 
225
170
  if (model)
226
171
  grok.shell.closeTable(model.df);
@@ -1,7 +1,6 @@
1
- import * as grok from 'datagrok-api/grok';
2
1
  import * as DG from 'datagrok-api/dg';
3
2
 
4
- import {category, test, before, expect, expectFloat, awaitCheck} from '@datagrok-libraries/utils/src/test';
3
+ import {category, test, before, expect, expectFloat, awaitCheck, delay} from '@datagrok-libraries/utils/src/test';
5
4
  import {_package} from '../package-test';
6
5
  import {PeptidesModel, VIEWER_TYPE, getAggregatedColName} from '../model';
7
6
  import {startAnalysis} from '../widgets/peptides';
@@ -35,16 +34,8 @@ category('Model: Settings', () => {
35
34
  if (tempModel === null)
36
35
  throw new Error('Model is null');
37
36
  model = tempModel;
38
- let overlayInit = false;
39
- model._analysisView!.grid.onAfterDrawOverlay.subscribe(() => overlayInit = true);
40
-
41
- // Ensure grid finished initializing to prevent Unhandled exceptions
42
- let accrodionInit = false;
43
- grok.events.onAccordionConstructed.subscribe((_) => accrodionInit = true);
44
- await awaitCheck(() => model!.df.currentRowIdx === 0, 'Grid cell never finished initializing', 2000);
45
- await awaitCheck(() => grok.shell.o instanceof DG.Column, 'Shell object never changed', 2000);
46
- await awaitCheck(() => accrodionInit, 'Accordion never finished initializing', 2000);
47
- await awaitCheck(() => overlayInit, 'Overlay never finished initializing', 2000);
37
+
38
+ await delay(500);
48
39
  });
49
40
 
50
41
  test('Activity scaling', async () => {
@@ -1,7 +1,6 @@
1
- import * as grok from 'datagrok-api/grok';
2
1
  import * as DG from 'datagrok-api/dg';
3
2
 
4
- import {category, test, before, expect, awaitCheck} from '@datagrok-libraries/utils/src/test';
3
+ import {category, test, before, expect, delay} from '@datagrok-libraries/utils/src/test';
5
4
  import {_package} from '../package-test';
6
5
  import {CLUSTER_TYPE, PeptidesModel} from '../model';
7
6
  import {startAnalysis} from '../widgets/peptides';
@@ -36,16 +35,8 @@ category('Table view', () => {
36
35
  if (tempModel === null)
37
36
  throw new Error('Model is null');
38
37
  model = tempModel;
39
- let overlayInit = false;
40
- model._analysisView!.grid.onAfterDrawOverlay.subscribe(() => overlayInit = true);
41
-
42
- // Ensure grid finished initializing to prevent Unhandled exceptions
43
- let accrodionInit = false;
44
- grok.events.onAccordionConstructed.subscribe((_) => accrodionInit = true);
45
- await awaitCheck(() => model!.df.currentRowIdx === 0, 'Grid cell never finished initializing', 2000);
46
- await awaitCheck(() => grok.shell.o instanceof DG.Column, 'Shell object never changed', 2000);
47
- await awaitCheck(() => accrodionInit, 'Accordion never finished initializing', 2000);
48
- await awaitCheck(() => overlayInit, 'Overlay never finished initializing', 2000);
38
+
39
+ await delay(500);
49
40
  });
50
41
 
51
42
  test('Tooltip', async () => {
@@ -74,6 +65,7 @@ category('Table view', () => {
74
65
 
75
66
  // Select first monomer-position pair
76
67
  model.modifyMutationCliffsSelection(firstPair);
68
+ await delay(500);
77
69
  expect(model.mutationCliffsSelection[firstPair.positionOrClusterType].includes(firstPair.monomerOrCluster), true,
78
70
  `Monomer ${firstPair.monomerOrCluster} is not selected at position ${firstPair.positionOrClusterType}`);
79
71
  expect(selection.trueCount, firstPair.mcCount, `Selection count is not equal to ${firstPair.mcCount} ` +
@@ -81,6 +73,7 @@ category('Table view', () => {
81
73
 
82
74
  // Select second monomer-position pair
83
75
  model.modifyMutationCliffsSelection(secondPair, {shiftPressed: true, ctrlPressed: false});
76
+ await delay(500);
84
77
  expect(model.mutationCliffsSelection[secondPair.positionOrClusterType].includes(secondPair.monomerOrCluster), true,
85
78
  `Monomer ${secondPair.monomerOrCluster} is not selected at position ${secondPair.positionOrClusterType}`);
86
79
  expect(selection.trueCount, secondPair.mcCount + firstPair.mcCount, `Selection count is not equal ` +
@@ -89,6 +82,7 @@ category('Table view', () => {
89
82
 
90
83
  // Deselect second monomer-position pair
91
84
  model.modifyMutationCliffsSelection(secondPair, {shiftPressed: true, ctrlPressed: true});
85
+ await delay(500);
92
86
  expect(model.mutationCliffsSelection[secondPair.positionOrClusterType].includes(secondPair.monomerOrCluster), false,
93
87
  `Monomer ${secondPair.monomerOrCluster} is still selected at position ${secondPair.positionOrClusterType} after deselection`);
94
88
  expect(selection.trueCount, firstPair.mcCount, `Selection count is not equal to ${firstPair.mcCount} ` +
@@ -96,6 +90,7 @@ category('Table view', () => {
96
90
 
97
91
  // Clear monomer-position selection
98
92
  model.initMutationCliffsSelection();
93
+ await delay(500);
99
94
  for (const [position, selectedMonomers] of Object.entries(model.mutationCliffsSelection)) {
100
95
  expect(selectedMonomers.length, 0, `Selection is not empty for position ${position} after clearing ` +
101
96
  `monomer-position selection`);
@@ -104,6 +99,7 @@ category('Table view', () => {
104
99
 
105
100
  // Select first cluster
106
101
  model.modifyClusterSelection(firstCluster);
102
+ await delay(500);
107
103
  expect(model.clusterSelection[firstCluster.positionOrClusterType].includes(firstCluster.monomerOrCluster), true,
108
104
  `Cluster ${firstCluster.monomerOrCluster} is not selected`);
109
105
  expect(selection.trueCount, firstCluster.count, `Selection count is not equal to ${firstCluster.count} for ` +
@@ -111,6 +107,7 @@ category('Table view', () => {
111
107
 
112
108
  // Select second cluster
113
109
  model.modifyClusterSelection(secondCluster, {shiftPressed: true, ctrlPressed: false});
110
+ await delay(500);
114
111
  expect(model.clusterSelection[secondCluster.positionOrClusterType].includes(secondCluster.monomerOrCluster), true,
115
112
  `Cluster ${secondCluster.monomerOrCluster} is not selected`);
116
113
  expect(selection.trueCount, firstCluster.count + secondCluster.count, `Selection count is not equal to ` +
@@ -118,6 +115,7 @@ category('Table view', () => {
118
115
 
119
116
  // Deselect first cluster
120
117
  model.modifyClusterSelection(firstCluster, {shiftPressed: true, ctrlPressed: true});
118
+ await delay(500);
121
119
  expect(model.clusterSelection[firstCluster.positionOrClusterType].includes(firstCluster.monomerOrCluster), false,
122
120
  `Cluster ${firstCluster.monomerOrCluster} is still selected after deselection`);
123
121
  expect(selection.trueCount, secondCluster.count, `Selection count is not equal to ${secondCluster.count} for ` +
@@ -125,6 +123,7 @@ category('Table view', () => {
125
123
 
126
124
  // Clear selection
127
125
  model.initClusterSelection();
126
+ await delay(500);
128
127
  expect(model.isClusterSelectionEmpty, true, `Selection is not empty after clearing cluster selection`);
129
128
  expect(selection.trueCount, 0, `Selection count is not equal to 0 after clearing cluster selection`);
130
129
  });
@@ -137,6 +136,7 @@ category('Table view', () => {
137
136
 
138
137
  // Select by second monomer-position pair
139
138
  model.modifyInvariantMapSelection(secondPair);
139
+ await delay(500);
140
140
  expect(model.invariantMapSelection[secondPair.positionOrClusterType].includes(secondPair.monomerOrCluster), true,
141
141
  `Monomer ${secondPair.monomerOrCluster} is not filtered at position ${secondPair.positionOrClusterType}`);
142
142
  expect(selection.trueCount, secondPair.imCount, `Filter count is not equal to ${secondPair.imCount} ` +
@@ -144,6 +144,7 @@ category('Table view', () => {
144
144
 
145
145
  // Select by first monomer-position pair
146
146
  model.modifyInvariantMapSelection(firstPair, {shiftPressed: true, ctrlPressed: false});
147
+ await delay(500);
147
148
  expect(model.invariantMapSelection[firstPair.positionOrClusterType].includes(firstPair.monomerOrCluster), true,
148
149
  `Monomer ${firstPair.monomerOrCluster} is not filtered at position ${firstPair.positionOrClusterType}`);
149
150
  expect(selection.trueCount, secondPair.imCount, `Filter count is not equal to ${secondPair.imCount} ` +
@@ -151,6 +152,7 @@ category('Table view', () => {
151
152
 
152
153
  // Deselect filter for second monomer-position pair
153
154
  model.modifyInvariantMapSelection(secondPair, {shiftPressed: true, ctrlPressed: true});
155
+ await delay(500);
154
156
  expect(model.invariantMapSelection[secondPair.positionOrClusterType].includes(secondPair.monomerOrCluster), false,
155
157
  `Monomer ${secondPair.monomerOrCluster} is still filtered at position ${secondPair.positionOrClusterType} after ` +
156
158
  `deselection`);
@@ -160,6 +162,7 @@ category('Table view', () => {
160
162
 
161
163
  // Clear selection
162
164
  model.initInvariantMapSelection();
165
+ await delay(500);
163
166
  expect(selection.trueCount, 0, `Filter count is not equal to ${0} after clearing monomer-position filter`);
164
167
 
165
168
  for (const [position, filteredMonomers] of Object.entries(model.invariantMapSelection)) {
@@ -1,7 +1,6 @@
1
- import * as grok from 'datagrok-api/grok';
2
1
  import * as DG from 'datagrok-api/dg';
3
2
 
4
- import {awaitCheck, before, category, expect, test, testViewer} from '@datagrok-libraries/utils/src/test';
3
+ import {before, category, delay, expect, test, testViewer} from '@datagrok-libraries/utils/src/test';
5
4
  import {aligned1} from './test-data';
6
5
  import {CLUSTER_TYPE, PeptidesModel, VIEWER_TYPE} from '../model';
7
6
  import {_package} from '../package-test';
@@ -46,18 +45,9 @@ category('Viewers: Monomer-Position', () => {
46
45
  if (tempModel === null)
47
46
  throw new Error('Model is null');
48
47
  model = tempModel;
49
- let overlayInit = false;
50
- model._analysisView!.grid.onAfterDrawOverlay.subscribe(() => overlayInit = true);
51
-
52
48
  mpViewer = model.findViewer(VIEWER_TYPE.MONOMER_POSITION) as MonomerPosition;
53
49
 
54
- // Ensure grid finished initializing to prevent Unhandled exceptions
55
- let accrodionInit = false;
56
- grok.events.onAccordionConstructed.subscribe((_) => accrodionInit = true);
57
- await awaitCheck(() => model!.df.currentRowIdx === 0, 'Grid cell never finished initializing', 2000);
58
- await awaitCheck(() => grok.shell.o instanceof DG.Column, 'Shell object never changed', 2000);
59
- await awaitCheck(() => accrodionInit, 'Accordion never finished initializing', 2000);
60
- await awaitCheck(() => overlayInit, 'Overlay never finished initializing', 2000);
50
+ await delay(500);
61
51
  });
62
52
 
63
53
  test('Tooltip', async () => {
@@ -107,18 +97,9 @@ category('Viewers: Most Potent Residues', () => {
107
97
  if (tempModel === null)
108
98
  throw new Error('Model is null');
109
99
  model = tempModel;
110
- let overlayInit = false;
111
- model._analysisView!.grid.onAfterDrawOverlay.subscribe(() => overlayInit = true);
112
-
113
100
  mprViewer = model.findViewer(VIEWER_TYPE.MOST_POTENT_RESIDUES) as MostPotentResidues;
114
101
 
115
- // Ensure grid finished initializing to prevent Unhandled exceptions
116
- let accrodionInit = false;
117
- grok.events.onAccordionConstructed.subscribe((_) => accrodionInit = true);
118
- await awaitCheck(() => model!.df.currentRowIdx === 0, 'Grid cell never finished initializing', 2000);
119
- await awaitCheck(() => grok.shell.o instanceof DG.Column, 'Shell object never changed', 2000);
120
- await awaitCheck(() => accrodionInit, 'Accordion never finished initializing', 2000);
121
- await awaitCheck(() => overlayInit, 'Overlay never finished initializing', 2000);
102
+ await delay(500);
122
103
  });
123
104
 
124
105
  test('Tooltip', async () => {
@@ -152,18 +133,10 @@ category('Viewers: Logo Summary Table', () => {
152
133
  if (tempModel === null)
153
134
  throw new Error('Model is null');
154
135
  model = tempModel;
155
- let overlayInit = false;
156
- model._analysisView!.grid.onAfterDrawOverlay.subscribe(() => overlayInit = true);
157
136
 
158
137
  lstViewer = model.findViewer(VIEWER_TYPE.LOGO_SUMMARY_TABLE) as LogoSummaryTable;
159
138
 
160
- // Ensure grid finished initializing to prevent Unhandled exceptions
161
- let accrodionInit = false;
162
- grok.events.onAccordionConstructed.subscribe((_) => accrodionInit = true);
163
- await awaitCheck(() => model!.df.currentRowIdx === 0, 'Grid cell never finished initializing', 2000);
164
- await awaitCheck(() => grok.shell.o instanceof DG.Column, 'Shell object never changed', 2000);
165
- await awaitCheck(() => accrodionInit, 'Accordion never finished initializing', 2000);
166
- await awaitCheck(() => overlayInit, 'Overlay never finished initializing', 2000);
139
+ await delay(500);
167
140
  });
168
141
 
169
142
  test('Properties', async () => {
@@ -1,7 +1,7 @@
1
1
  import * as grok from 'datagrok-api/grok';
2
2
  import * as DG from 'datagrok-api/dg';
3
3
 
4
- import {category, test, before, expect, awaitCheck} from '@datagrok-libraries/utils/src/test';
4
+ import {category, test, before, expect, delay} from '@datagrok-libraries/utils/src/test';
5
5
  import {_package} from '../package-test';
6
6
  import {CLUSTER_TYPE, PeptidesModel, VIEWER_TYPE} from '../model';
7
7
  import {scaleActivity} from '../utils/misc';
@@ -36,16 +36,8 @@ category('Widgets: Settings', () => {
36
36
  if (tempModel === null)
37
37
  throw new Error('Model is null');
38
38
  model = tempModel;
39
- let overlayInit = false;
40
- model._analysisView!.grid.onAfterDrawOverlay.subscribe(() => overlayInit = true);
41
-
42
- // Ensure grid finished initializing to prevent Unhandled exceptions
43
- let accrodionInit = false;
44
- grok.events.onAccordionConstructed.subscribe((_) => accrodionInit = true);
45
- await awaitCheck(() => model!.df.currentRowIdx === 0, 'Grid cell never finished initializing', 2000);
46
- await awaitCheck(() => grok.shell.o instanceof DG.Column, 'Shell object never changed', 2000);
47
- await awaitCheck(() => accrodionInit, 'Accordion never finished initializing', 2000);
48
- await awaitCheck(() => overlayInit, 'Overlay never finished initializing', 2000);
39
+
40
+ await delay(500);
49
41
  });
50
42
 
51
43
  test('UI', async () => {
@@ -87,16 +79,8 @@ category('Widgets: Distribution panel', () => {
87
79
  if (tempModel === null)
88
80
  throw new Error('Model is null');
89
81
  model = tempModel;
90
- let overlayInit = false;
91
- model._analysisView!.grid.onAfterDrawOverlay.subscribe(() => overlayInit = true);
92
-
93
- // Ensure grid finished initializing to prevent Unhandled exceptions
94
- let accrodionInit = false;
95
- grok.events.onAccordionConstructed.subscribe((_) => accrodionInit = true);
96
- await awaitCheck(() => model!.df.currentRowIdx === 0, 'Grid cell never finished initializing', 2000);
97
- await awaitCheck(() => grok.shell.o instanceof DG.Column, 'Shell object never changed', 2000);
98
- await awaitCheck(() => accrodionInit, 'Accordion never finished initializing', 2000);
99
- await awaitCheck(() => overlayInit, 'Overlay never finished initializing', 2000);
82
+
83
+ await delay(500);
100
84
  });
101
85
 
102
86
  test('UI', async () => {
@@ -125,16 +109,8 @@ category('Widgets: Mutation cliffs', () => {
125
109
  if (tempModel === null)
126
110
  throw new Error('Model is null');
127
111
  model = tempModel;
128
- let overlayInit = false;
129
- model._analysisView!.grid.onAfterDrawOverlay.subscribe(() => overlayInit = true);
130
-
131
- // Ensure grid finished initializing to prevent Unhandled exceptions
132
- let accrodionInit = false;
133
- grok.events.onAccordionConstructed.subscribe((_) => accrodionInit = true);
134
- await awaitCheck(() => model!.df.currentRowIdx === 0, 'Grid cell never finished initializing', 2000);
135
- await awaitCheck(() => grok.shell.o instanceof DG.Column, 'Shell object never changed', 2000);
136
- await awaitCheck(() => accrodionInit, 'Accordion never finished initializing', 2000);
137
- await awaitCheck(() => overlayInit, 'Overlay never finished initializing', 2000);
112
+
113
+ await delay(500);
138
114
  });
139
115
 
140
116
  test('UI', async () => {
@@ -163,16 +139,8 @@ category('Widgets: Actions', () => {
163
139
  if (tempModel === null)
164
140
  throw new Error('Model is null');
165
141
  model = tempModel;
166
- let overlayInit = false;
167
- model._analysisView!.grid.onAfterDrawOverlay.subscribe(() => overlayInit = true);
168
-
169
- // Ensure grid finished initializing to prevent Unhandled exceptions
170
- let accrodionInit = false;
171
- grok.events.onAccordionConstructed.subscribe((_) => accrodionInit = true);
172
- await awaitCheck(() => model!.df.currentRowIdx === 0, 'Grid cell never finished initializing', 2000);
173
- await awaitCheck(() => grok.shell.o instanceof DG.Column, 'Shell object never changed', 2000);
174
- await awaitCheck(() => accrodionInit, 'Accordion never finished initializing', 2000);
175
- await awaitCheck(() => overlayInit, 'Overlay never finished initializing', 2000);
142
+
143
+ await delay(500);
176
144
  });
177
145
 
178
146
  test('New view', async () => {
@@ -192,8 +160,7 @@ category('Widgets: Actions', () => {
192
160
  expect(currentTable.getTag(C.TAGS.UUID), newViewId, 'Current table is expected to have the same UUID as new view');
193
161
  expect(currentTable.rowCount, 1, 'Current table is expected to have 1 row');
194
162
 
195
- await awaitCheck(() => currentTable.currentRowIdx === 0, 'Grid never finished initializing', 2000);
196
-
163
+ await delay(500);
197
164
  const currentTableModel = currentTable.temp[PeptidesModel.modelName] as PeptidesModel;
198
165
  const lstViewer = currentTableModel.findViewer(VIEWER_TYPE.LOGO_SUMMARY_TABLE);
199
166
  expect(lstViewer !== null, true, 'New view is expected to have Logo Summary Table viewer attached');
package/src/utils/misc.ts CHANGED
@@ -99,3 +99,36 @@ export function prepareTableForHistogram(table: DG.DataFrame): DG.DataFrame {
99
99
  DG.Column.fromList(DG.TYPE.BOOL, C.COLUMNS_NAMES.SPLIT_COL, expandedMasks),
100
100
  ]);
101
101
  }
102
+
103
+ export function addExpandIcon(grid: DG.Grid): void {
104
+ const fullscreenIcon = ui.iconFA('expand-alt', () => {
105
+ const fullscreenGrid = grid.dataFrame.plot.grid();
106
+ setGridProps(fullscreenGrid);
107
+ fullscreenGrid.root.style.height = '100%';
108
+ const pairsFullscreenDialog = ui.dialog(grid.dataFrame.name);
109
+ pairsFullscreenDialog.add(fullscreenGrid.root);
110
+ pairsFullscreenDialog.showModal(true);
111
+ fullscreenGrid.invalidate();
112
+ });
113
+ grid.root.appendChild(fullscreenIcon);
114
+ fullscreenIcon.style.position = 'absolute';
115
+ fullscreenIcon.style.right = '0px';
116
+ fullscreenIcon.style.top = '0px';
117
+ fullscreenIcon.style.visibility = 'hidden';
118
+ grid.root.addEventListener('mouseenter', (_) => {
119
+ fullscreenIcon.style.visibility = 'visible';
120
+ });
121
+ grid.root.addEventListener('mouseleave', (_) => {
122
+ fullscreenIcon.style.visibility = 'hidden';
123
+ });
124
+ }
125
+
126
+ export function setGridProps(grid: DG.Grid): void {
127
+ grid.props.allowEdit = false;
128
+ grid.props.allowRowSelection = false;
129
+ grid.props.allowBlockSelection = false;
130
+ grid.props.allowColSelection = false;
131
+ grid.props.showRowHeader = false;
132
+ grid.props.showCurrentRowIndicator = false;
133
+ grid.root.style.width = '100%';
134
+ }