@datagrok/hit-triage 1.9.2 → 1.10.0

package/dist/package.js

@@ -1,2 +1,2 @@
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a={};n.onItemAdded.subscribe(e=>{a={}}),n.onAddingItemChanged.subscribe(e=>{e&&(a=e.item)});const r=t.h2("Additional fields");t.tooltip.bind(r,"Additional fields to be filled by user for each campaign");const s=t.div([r,n.root]);return{getFields:function(){var e;const t=n.items.filter(e=>e.Name).map(e=>{var t;return{name:e.Name,type:e.Type,required:null!==(t=e.Required)&&void 0!==t&&t}});return a.Name&&""!==a.Name&&a.Type&&(null!==(e=a.Required)&&void 0!==e||(a.Required=!1),t.push({name:a.Name,type:a.Type,required:a.Required})),t},fieldsDiv:t.div([s])}}var _e=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function r(e){try{l(n.next(e))}catch(e){a(e)}}function s(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(r,s)}l((n=n.apply(e,t||[])).next())})};class Pe extends o.ViewBase{constructor(e){super(),this.deletedCampaigns=[],this.app=e}get template(){return this.app.template}onActivated(){}onReset(){}process(){return _e(this,void 0,void 0,function*(){})}deleteCampaign(e,t){return _e(this,void 0,void 0,function*(){yield Gt.files.delete(`${e}/campaigns/${t}`)})}}var Le=i(677),Oe={};Oe.styleTagTransform=K(),Oe.setAttributes=Y(),Oe.insert=q().bind(null,"head"),Oe.domAPI=$(),Oe.insertStyleElement=J(),j()(Le.A,Oe),Le.A&&Le.A.locals&&Le.A.locals;var Ve;!function(i){let n,o;!function(e){e.vert=function(e){return t.divV(e.map(e=>t.render(e)),{classes:"u2-panel"})},e.horz=function(e){return t.divH(e.map(e=>t.render(e)),{classes:"u2-panel"})}}(n=i.panels||(i.panels={})),i.appHeader=function(e){const i=t.iconImage("",e.iconPath);return Ce()(i).addClass("ui-app-header-icon").css("margin-right","20px"),n.horz([i,n.vert([t.markdown(e.description),e.learnMoreUrl?t.link("Learn more",e.learnMoreUrl):null])])},function(i){i.runAsync=function(i,n){return o=this,a=void 0,s=function*(){t.setUpdateIndicator(i,!0);try{return yield n()}catch(t){e.log.error(t)}finally{t.setUpdateIndicator(i,!1)}},new((r=void 0)||(r=Promise))(function(e,t){function i(e){try{l(s.next(e))}catch(e){t(e)}}function n(e){try{l(s.throw(e))}catch(e){t(e)}}function l(t){var o;t.done?e(t.value):(o=t.value,o instanceof r?o:new r(function(e){e(o)})).then(i,n)}l((s=s.apply(o,a||[])).next())});var o,a,r,s}}(o=i.tools||(i.tools={}))}(Ve||(Ve={}));var ke=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function r(e){try{l(n.next(e))}catch(e){a(e)}}function s(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(r,s)}l((n=n.apply(e,t||[])).next())})};const Be={view:[o.Group.defaultGroupsIds["All users"]],edit:[o.Group.defaultGroupsIds["All users"]]};class Me{constructor(e){this.permissions=null!=e?e:Be,this.editGroupsInput=t.input.userGroups("Can Edit"),this.editGroupsInput.root.style.marginBottom="16px",this.viewGroupsInput=t.input.userGroups("Can View")}getDialogContent(){return ke(this,void 0,void 0,function*(){const i=[],n=[];for(const t of this.permissions.view){const n=yield e.dapi.groups.find(t);n&&i.push(n)}for(const t of this.permissions.edit){const i=yield e.dapi.groups.find(t);i&&n.push(i)}return this.editGroupsInput.value=n,this.viewGroupsInput.value=i,t.divV([this.viewGroupsInput.root,this.editGroupsInput.root])})}show(e){return ke(this,void 0,void 0,function*(){var i;const n=yield this.getDialogContent(),o=t.dialog("Edit Permissions").add(n).onOK(()=>{const t=new Set(this.editGroupsInput.value.map(e=>e.id)),i=new Set(this.viewGroupsInput.value.map(e=>e.id));this.permissions.edit=Array.from(t),t.forEach(e=>i.add(e)),this.permissions.view=Array.from(i),0===this.permissions.view.length&&(this.permissions.view=Be.view),e(this.permissions)});(null===(i=n.parentElement)||void 0===i?void 0:i.style)&&(n.parentElement.style.overflow="visible"),o.show()})}}var De=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function r(e){try{l(n.next(e))}catch(e){a(e)}}function s(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(r,s)}l((n=n.apply(e,t||[])).next())})};class Re extends Pe{constructor(t){super(t),this.readmePath=Gt.webRoot+"README_HT.md",this.dataSourceFunctionsMap={},this.name="Hit Triage",e.shell.windows.showHelp=!0,e.shell.windows.help.showHelp(this.readmePath),this.checkCampaign().then(e=>{this.app.campaign=e,this.init()})}onActivated(){e.shell.windows.showHelp=!0,e.shell.windows.help.showHelp(this.readmePath)}init(e){return De(this,void 0,void 0,function*(){t.setUpdateIndicator(this.root,!0);try{const i=t.h1(N),n=t.h1(E,{style:{marginLeft:"10px"}}),o=Ve.appHeader({iconPath:Gt.webRoot+"/images/icons/hit-triage-icon.png",learnMoreUrl:"https://github.com/datagrok-ai/public/blob/master/packages/HitTriage/README_HT.md",description:"- Configure your own workflow using the template editor.\n- Calculate different molecular properties.\n- Filter molecules using different criteria.\n- Submit processed dataframe to the function of your choice.\n- Save campaigns and continue any time from where you left off.\n "}),a=t.div(),r=t.div([],{classes:"ui-form"}),s=yield this.getCampaignsTable();yield this.startNewCampaign(a,r,e),Ce()(this.root).empty(),this.root.appendChild(t.div([t.divV([o,i],{style:{marginLeft:"10px"}}),s,n,r,a]))}catch(e){throw t.setUpdateIndicator(this.root,!1),e}finally{t.setUpdateIndicator(this.root,!1)}})}startNewCampaign(e,i,n){return De(this,void 0,void 0,function*(){var o;const a=(yield Gt.files.list("Hit Triage/templates")).map(e=>e.name.slice(0,-5));n&&!a.includes(n.name)&&a.push(n.name);const r=()=>De(this,void 0,void 0,function*(){const t=s.value,i=n&&n.name===t?n:JSON.parse(yield Gt.files.readAsText("Hit Triage/templates/"+t+".json")),o=yield this.getNewCampaignAccordeon(i,e);Ce()(e).empty(),e.className="ui-form",e.appendChild(o)}),s=t.input.choice("Template",{value:null!==(o=null==n?void 0:n.name)&&void 0!==o?o:a[0],items:a,onValueChanged:()=>De(this,void 0,void 0,function*(){yield r()})}),l=t.icons.add(()=>De(this,void 0,void 0,function*(){t.setUpdateIndicator(this.root,!0),yield this.createNewTemplate(),t.setUpdateIndicator(this.root,!1)}),A);s.addOptions(l),yield r(),Ce()(i).empty(),i.appendChild(s.root)})}checkCampaign(e){return De(this,void 0,void 0,function*(){const t=location.search,i=new URLSearchParams(t);if(!i.has(a)&&!e)return;const n=null!=e?e:i.get(a);if(!(yield Gt.files.exists(`Hit Triage/campaigns/${n}/${l}`)))return;const o=JSON.parse(yield Gt.files.readAsText(`Hit Triage/campaigns/${n}/${l}`));if(o){if(o.authorUserId&&o.permissions&&!(yield le(o.authorUserId,o.permissions)))return void this.app.setBaseUrl();this.app.campaign=o}const r=JSON.parse(yield Gt.files.readAsText(`Hit Triage/templates/${o.templateName}.json`));return this.app.setTemplate(r,o.filters,n,o.ingest),e&&te(a,e),o})}getCampaignsTable(){return De(this,void 0,void 0,function*(){const e=yield Gt.loadCampaigns("Hit Triage",this.deletedCampaigns),i=e=>{var i,n;const a=t.icons.delete(()=>De(this,void 0,void 0,function*(){t.dialog("Delete campaign").add(t.divText(`Are you sure you want to delete campaign ${e.name}?`)).onOK(()=>De(this,void 0,void 0,function*(){yield this.deleteCampaign("Hit Triage",e.name),this.deletedCampaigns.push(e.name),yield this.init()})).show()}),"Delete campaign");return a.style.display="none",se(null!==(i=e.authorUserId)&&void 0!==i?i:o.User.current().id,null!==(n=e.permissions)&&void 0!==n?n:Be).then(e=>{e&&(a.style.display="inline-block")}),a},n=Object.values(e),a=t.table(n,e=>[t.link(e.name,()=>this.setCampaign(e.name),"",""),e.createDate,e.rowCount,e.filteredRowCount,e.status,i(e)],["Name","Created","Total","Selected","Status",""]);return a.style.color="var(--grey-5)",a})}setCampaign(e){return De(this,void 0,void 0,function*(){const t=yield this.checkCampaign(e);this.app.campaign=t})}getNewCampaignAccordeon(i,n){return De(this,void 0,void 0,function*(){t.setUpdateIndicator(n,!0);const{root:a,promise:r,cancelPromise:s}=yield function(i,n){return we(this,void 0,void 0,function*(){var a,r;const s=t.divText("",{style:{color:"red"}});let l=null;const d=()=>we(this,void 0,void 0,function*(){try{if(l=u.value,!l)return;if(yield l.meta.detectSemanticTypes(),!l.columns.bySemType(o.SEMTYPE.MOLECULE))return void(s.innerText="No molecules column found");s.innerText=""}catch(e){s.innerText="Error parsing file"}}),u=t.input.table("Dataframe",{onValueChanged:d});yield d();const p=t.div([u,s]);0===Object.keys(n).length&&Array.from(new Set(o.Func.find({meta:{role:c}}).concat(o.Func.find({tags:[c]})))).forEach(e=>{var t;n[null!==(t=e.friendlyName)&&void 0!==t?t:e.name]=e});let m=null;const h=()=>we(this,void 0,void 0,function*(){const e=n[f.value];m=e.prepare();const t=yield m.getEditor();t.classList.remove("ui-form"),v.innerHTML="",v.appendChild(t)}),v=t.div([]),f=t.input.choice(C,{value:null!==(a=i.queryFunctionName)&&void 0!==a?a:Object.keys(n)[0],items:Object.keys(n),onValueChanged:h});yield h(),i.queryFunctionName&&(null===(r=f.root.getElementsByTagName("select").item(0))||void 0===r||r.setAttribute("disabled","true"));const g=t.div([f,v]);g.style.display="none";const y=t.div([p,g]),w=i.campaignFields.map(e=>e.type===o.SEMTYPE.MOLECULE?Object.assign(Object.assign({},e),{type:"String",semtype:o.SEMTYPE.MOLECULE}):e).map(e=>o.Property.fromOptions(Object.assign({name:e.name,type:ye[e.type],nullable:!e.required},e.semtype?{semType:e.semtype}:{}))),b={},A=w.length?t.input.form(b,w):t.div();A.classList.remove("ui-form"),"File"===i.dataSourceType?(p.style.display="inherit",g.style.display="none"):(p.style.display="none",g.style.display="inherit");const S=t.div([y,...w.length?[A]:[]]),x=t.buttonsInput([]);return S.appendChild(x),{promise:new Promise(o=>{const a=()=>we(this,void 0,void 0,function*(){if("File"===i.dataSourceType){if(!l)return void e.shell.error("No file selected");const t=l;t.name=l.name,o({df:t,type:"File",campaignProps:b})}else{const t=n[f.value];if(!t)return void e.shell.error("No function selected");const i={};Object.entries(m.inputs).forEach(([e,t])=>{i[e]=t});const a=yield t.apply(i);o({df:a,type:"Query",campaignProps:b})}}),r=t.bigButton(T,()=>a());x.appendChild(r)}),root:S,cancelPromise:new Promise(e=>{t.button(I,()=>e())})}})}(i,this.dataSourceFunctionsMap);return t.setUpdateIndicator(n,!1),r.then(e=>De(this,void 0,void 0,function*(){this.app.dataFrame=e.df,this.app._fileInputType=e.type,yield this.app.setTemplate(i),this.app.campaignProps=e.campaignProps,yield this.app.saveCampaign(void 0,!1),i.layoutViewState&&this.app.campaign&&(this.app.campaign.layout=i.layoutViewState)})),s.then(()=>{this.init()}),a})}createNewTemplate(){return De(this,void 0,void 0,function*(){const t=yield Ee(this.app,this.dataSourceFunctionsMap),i=new o.ViewBase,n=e.shell.v;i.name="New Template",i.root.appendChild(t.root),i.parentCall=this.app.parentCall,e.shell.addView(i),i.path=new URL(this.app.baseUrl).pathname+"/new-template",i.parentView=n;const{sub:a}=ie(e.shell.v,"Hit Triage",A,()=>{e.shell.v=n,i.close()});t.template.then(t=>De(this,void 0,void 0,function*(){yield this.init(t),i.close(),ne(i),e.shell.v=n,a.unsubscribe()})),t.cancelPromise.then(()=>{a.unsubscribe(),i.close(),e.shell.v=n})})}}class je extends Pe{constructor(e){super(e),this.name="Submit"}render(){return t.empty(this.root),t.divV([t.h1("Summary"),t.div([t.tableFromMap(this.app.getSummary())])])}onActivated(){this.render()}submit(){return t=this,i=void 0,a=function*(){const t=this.app.submitParams;if(!t)return;const i=o.Func.find({name:t.fName,package:t.package})[0];if(!i)return void e.shell.error(`Function ${t.fName} not found.`);const n=o.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield i.apply({df:n,molecules:this.app.molColName}),this.app.campaign&&(this.app.campaign.status="Submitted"),this.app.saveCampaign("Submitted"),e.shell.info("Submitted successfully.")},new((n=void 0)||(n=Promise))(function(e,o){function r(e){try{l(a.next(e))}catch(e){o(e)}}function s(e){try{l(a.throw(e))}catch(e){o(e)}}function l(t){var i;t.done?e(t.value):(i=t.value,i instanceof n?i:new n(function(e){e(i)})).then(r,s)}l((a=a.apply(t,i||[])).next())});var t,i,n,a}}var Ue,$e,He=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function r(e){try{l(n.next(e))}catch(e){a(e)}}function s(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(r,s)}l((n=n.apply(e,t||[])).next())})};!function(t){t.acquireCampaignLock=function(t,i,n){return He(this,void 0,void 0,function*(){return yield e.data.query("HitTriage:AcquireCampaignLock",{appName:t,campaignId:i,lockedBy:n})})},t.releaseCampaignLock=function(t,i){return He(this,void 0,void 0,function*(){return yield e.data.query("HitTriage:ReleaseCampaignLock",{appName:t,campaignId:i})})},t.getLastModified=function(t,i){return He(this,void 0,void 0,function*(){return yield e.data.query("HitTriage:GetLastModified",{appName:t,campaignId:i})})},t.addMolecule=function(t,i,n,o){return He(this,void 0,void 0,function*(){return yield e.data.query("HitTriage:AddMolecule",{canonicalSmiles:t,appName:i,campaignId:n,createdBy:o})})},t.addMolecules=function(t,i,n,o){return He(this,void 0,void 0,function*(){return yield e.data.query("HitTriage:AddMolecules",{smiles:t,appName:i,campaignId:n,createdBy:o})})},t.getMoleculeByVid=function(t){return He(this,void 0,void 0,function*(){return yield e.data.query("HitTriage:GetMoleculeByVid",{vid:t})})},t.getCampaignsByVid=function(t,i){return He(this,void 0,void 0,function*(){return yield e.data.query("HitTriage:GetCampaignsByVid",{vid:t,appName:i})})}}(Ue||(Ue={})),function(t){t.hitTriageAppTreeBrowser=function(t){return He(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:HitTriageAppTreeBrowser",{treeNode:t})})},t.hitDesignAppTreeBrowser=function(t){return He(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:HitDesignAppTreeBrowser",{treeNode:t})})},t.peptiHitAppTreeBrowser=function(t){return He(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:PeptiHitAppTreeBrowser",{treeNode:t})})},t.hitTriageApp=function(){return He(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:HitTriageApp",{})})},t.hitDesignApp=function(){return He(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:HitDesignApp",{})})},t.peptiHitApp=function(){return He(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:PeptiHitApp",{})})},t.demoFileIngest=function(){return He(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:DemoFileIngest",{})})},t.demoFileIngest1=function(){return He(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:DemoFileIngest1",{})})},t.demoFileIngest2=function(t){return He(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:DemoFileIngest2",{numberOfMolecules:t})})},t.demoFileSubmit=function(t,i){return He(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:DemoFileSubmit",{df:t,molecules:i})})},t.registerMoleculesToViD=function(){return He(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:RegisterMoleculesToViD",{})})},t.hitDesignVidPanel=function(t){return He(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:HitDesignVidPanel",{vid:t})})},t.gasteigerCellRenderer=function(){return He(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:GasteigerCellRenderer",{})})},t.htPackageSettingEditor=function(t){return He(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:HtPackageSettingEditor",{propList:t})})}}($e||($e={}));var qe=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function r(e){try{l(n.next(e))}catch(e){a(e)}}function s(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(r,s)}l((n=n.apply(e,t||[])).next())})};class Ge{get appName(){return this._appName}constructor(e,t){this.parentCall=e,this.isJoining=!1,this.hasEditPermission=!1,this.baseUrl=new URL(window.location.href).origin+`/apps/HitTriage/${t.replace(" ","")}`,this._appName=t;const i=Array.from(new Set(o.Func.find({meta:{role:d}}).concat(o.Func.find({tags:[d]})))),n=i.filter(e=>e.type===P),a=i.filter(e=>e.type===_),r=i.filter(e=>e.type===L);this.computeFunctions={functions:n,scripts:a,queries:r}}setCanEdit(e){return qe(this,void 0,void 0,function*(){e.authorUserId&&e.permissions?this.hasEditPermission=yield se(e.authorUserId,e.permissions):this.hasEditPermission=!0})}getFilterType(e){const t=this.dataFrame.col(e);return(null==t?void 0:t.semType)===o.SEMTYPE.MOLECULE?o.FILTER_TYPE.SUBSTRUCTURE:(null==t?void 0:t.type)===o.COLUMN_TYPE.BOOL?o.FILTER_TYPE.BOOL_COLUMNS:(null==t?void 0:t.type)===o.COLUMN_TYPE.STRING?o.FILTER_TYPE.CATEGORICAL:o.FILTER_TYPE.HISTOGRAM}download(e,t,i=!1){const n=document.createElement("a"),a=o.DataFrame.fromColumns(e.columns.toList().filter(e=>!e.name.startsWith("~"))).toCsv({filteredRowsOnly:i});n.setAttribute("href","data:text/plain;charset=utf-8,"+encodeURIComponent(a)),n.setAttribute("download",t+".csv"),n.click()}getNewCampaignName(e,t){return qe(this,void 0,void 0,function*(){const i=(yield Gt.files.list(e)).map(e=>e.name).filter(e=>e.startsWith(`${t}-`)&&!!parseInt(e.substring(t.length+1)));if(0===i.length)return t+"-1";const n=i.map(e=>e.substring(t.length+1)).filter(Boolean).map(e=>parseInt(e,10)).sort((e,t)=>e-t);return t+"-"+(n[n.length-1]+1).toString()})}setBaseUrl(){const e=document.title;if(history.replaceState){const t={Title:e,Url:this.baseUrl};history.replaceState(t,t.Title,t.Url)}}unionDataframes(e,t,i,n){var a,r,s,l;const d=i;e.col(i).name=n,i=n;const c=null===(r=null===(a=e.col(i))||void 0===a?void 0:a.toList())||void 0===r?void 0:r.map(e=>Gt.convertToSmiles(e)),u=null===(l=null===(s=t.col(n))||void 0===s?void 0:s.toList())||void 0===l?void 0:l.map(e=>Gt.convertToSmiles(e));if(!c||!u)throw new Error("Molecule column not found");const p=new Map;u.forEach((e,t)=>{e&&"MALFORMED_INPUT_VALUE"!==e&&p.set(e,t)});const m=(e,t,i,n)=>{try{if(e.type===t.type)e.set(i,t.get(n),!1);else if(e.type===o.COLUMN_TYPE.STRING)e.set(i,t.getString(n),!1);else if(e.type===o.COLUMN_TYPE.INT){const o=t.get(n);"number"==typeof o?e.set(i,Math.round(o),!1):"string"==typeof o&&o.length>0&&!isNaN(Number(o))&&e.set(i,Math.round(Number(o)),!1)}else if(e.type===o.COLUMN_TYPE.FLOAT){const o=t.get(n);"number"==typeof o?e.set(i,o,!1):"string"==typeof o&&o.length>0&&!isNaN(Number(o))&&e.set(i,Number(o),!1)}else e.set(i,t.get(n),!1)}catch(o){Gt.logger.error(`Error setting column value for column ${e.name} at row ${i} from column ${t.name} at row ${n}: ${o}`)}};this.isJoining=!0;try{const i=[];for(const n of e.columns)if(!t.columns.contains(n.name)){const e=t.columns.addNew(n.name,n.type);n.semType&&(e.semType=n.semType),i.push(n.name)}for(let n=0;n<c.length;n++)if(c[n]&&"MALFORMED_INPUT_VALUE"!==c[n])if(p.has(c[n])){if(i.length>0){const o=p.get(c[n]);for(const a of i)m(t.col(a),e.col(a),o,n)}}else{t.rows.addNew(null,!0);for(const i of e.columns)m(t.col(i.name),i,t.rowCount-1,n)}}finally{setTimeout(()=>{this.isJoining=!1},500),e.col(i).name=d}return t}aquireAndWaitCampaignLock(e){return qe(this,arguments,void 0,function*(e,t=3e4){var i;const n=Date.now();let a=0,r=null;const s=o.User.current(),l=s&&(s.friendlyName||s.name)||"unknown";for(;Date.now()-n<t&&a<5;)try{const t=yield Ue.acquireCampaignLock(this.appName,e,l);if(t&&t.rowCount>0)return{aquired:!0,expires_at:null===(i=null==t?void 0:t.col("expires_at"))||void 0===i?void 0:i.getString(0)};r=null,yield o.delay(200)}catch(e){r=e,a++}if(r)throw r;return{aquired:!1,expires_at:null}})}releaseCampaignLock(e){return qe(this,void 0,void 0,function*(){var t,i;return(null===(i=null===(t=yield Ue.releaseCampaignLock(this.appName,e))||void 0===t?void 0:t.col("updated_at"))||void 0===i?void 0:i.getString(0))||null})}}Ge.molFileExtReaders=["sdf","mol","smi","mol2"].map(e=>{const t=o.Func.find({meta:{role:o.FUNC_TYPES.FILE_IMPORTER}}).concat(o.Func.find({tags:["file-handler"]})).find(t=>{var i;return(null===(i=null==t?void 0:t.options)||void 0===i?void 0:i.ext)&&"string"==typeof t.options.ext&&t.options.ext.split(",").includes(e)});return{ext:e,handlerFunc:t}}).filter(e=>e.handlerFunc);var Ye=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function r(e){try{l(n.next(e))}catch(e){a(e)}}function s(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(r,s)}l((n=n.apply(e,t||[])).next())})},We=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function r(e){try{l(n.next(e))}catch(e){a(e)}}function s(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(r,s)}l((n=n.apply(e,t||[])).next())})};function Je(t,i,n){return We(this,arguments,void 0,function*(t,i,n,a=[],r=[]){const s=o.TaskBarProgressIndicator.create("Calculating ..."),l=t.map(e=>Gt.convertToSmiles(e)),d=o.Column.fromStrings(h,l),c=o.DataFrame.fromColumns([d]);c.name="HD cell values",yield c.meta.detectSemanticTypes();const u=[];u.push(new Promise(t=>We(this,void 0,void 0,function*(){try{i.length&&(yield 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r){const t=e.args;u.push(new Promise(i=>We(this,void 0,void 0,function*(){try{const n=o.Func.find({name:e.name}).filter(t=>t.type===L&&t.id===e.id)[0];if(n){const e=n.inputs[0].name,o=[l],a=yield n.apply(Object.assign(Object.assign({},t),{[e]:o}));if(!a||0===a.rowCount)return void i();yield ae(c,h,a)}}catch(e){Gt.logger.error(e)}i()})))}yield Promise.all(u),s.close();const p=c.col(h);for(let e=0;e<p.length;e++)p.set(e,t[e],!1);return c})}function ze(t,i,n){return We(this,void 0,void 0,function*(){var a,r;const s=o.TaskBarProgressIndicator.create("Calculating ..."),l=i.col(n);if(!l)throw new Error("There is no molecule column in dataframe");const d=`~${n}.canonicalSmiles`,c=i.columns.getOrCreate(d,o.TYPE.STRING);c.semType=o.SEMTYPE.MOLECULE;const u=l.toList();for(let e=0;e<u.length;e++){if(l.isNone(e))continue;const t=u[e];if(!t)continue;const i=Gt.convertToSmiles(t);c.set(e,i,!1)}const p=[];p.push(new Promise(n=>We(this,void 0,void 0,function*(){try{t.descriptors&&t.descriptors.length>0&&(yield e.chem.descriptors(i,d,t.descriptors))}catch(e){Gt.logger.error("Descriptors calculation error"),Gt.logger.error(e)}n()})));for(const e of Object.keys(t.externals))p.push(new Promise(n=>We(this,void 0,void 0,function*(){try{const n=t.externals[e],a=o.Func.find({package:e.split(":")[0],name:e.split(":")[1]})[0],r=a.inputs[0].name,s=a.inputs[1].name;n&&(yield a.apply(Object.assign(Object.assign({},n),{[r]:i,[s]:d})))}catch(e){Gt.logger.error(e)}n()})));for(const e of Object.keys(null!==(a=t.scripts)&&void 0!==a?a:{})){const n=t.scripts[e];p.push(new Promise(t=>We(this,void 0,void 0,function*(){if(n){const a=e.split(":"),r=a[2];if(!r)return void t();try{const e=a[1],s=o.Func.find({name:e}).filter(e=>e.type===_&&e.id===r)[0];if(!s)return void t();const l=s.inputs[0].name,c=s.inputs[1].name,u=yield s.apply(Object.assign(Object.assign({},n),{[l]:i,[c]:d}));if(u&&u.rowCount===i.rowCount&&"python"===s.language)for(const e of u.columns)e.name=i.columns.getUnusedName(e.name),i.columns.add(e)}catch(e){Gt.logger.error(e)}}t()})))}for(const e of Object.keys(null!==(r=t.queries)&&void 0!==r?r:{})){const n=t.queries[e];p.push(new Promise(t=>We(this,void 0,void 0,function*(){if(n){const a=e.split(":"),r=a[2];if(!r)return void t();try{const e=a[1],s=o.Func.find({name:e}).filter(e=>e.type===L&&e.id===r)[0];if(!s)return void t();const l=s.inputs[0].name,u=yield s.apply(Object.assign(Object.assign({},n),{[l]:c.toList()}));u&&(yield ae(i,d,u))}catch(e){console.error(e)}}t()})))}yield Promise.all(p),s.close()})}var Ke=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function r(e){try{l(n.next(e))}catch(e){a(e)}}function s(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(r,s)}l((n=n.apply(e,t||[])).next())})};class Qe extends Ge{get infoView(){return this._infoView}constructor(t){super(t,"Hit Triage"),this._filterViewName="Hit 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s,l,d,c,u,p,m,h,v,f,g,b,C,A,T;if((null===(s=this._pickView)||void 0===s?void 0:s.dataFrame)&&e.shell.closeTable(null===(l=this._pickView)||void 0===l?void 0:l.dataFrame),this._pickView=void 0,n?r&&(this._fileInputType=r.type,"File"===r.type?this.dataFrame=yield e.dapi.files.readCsv(r.query):this.dataFrame=yield e.functions.call(r.query)):(n=yield this.getNewCampaignName("Hit Triage/campaigns",t.key),te(a,n)),!this.dataFrame)return void console.error("Dataframe is empty.");if((null===(d=this._campaign)||void 0===d?void 0:d.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach(([e,t])=>{const i=this.dataFrame.columns.byName(e);i&&i.semType!==t&&(i.semType=t)}),(null===(c=this._campaign)||void 0===c?void 0:c.columnTypes)&&Object.entries(this._campaign.columnTypes).forEach(([e,t])=>{const i=this.dataFrame.columns.byName(e);if(i&&i.type!==t)try{i.convertTo(t)}catch(e){console.error(e)}}),yield 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0,function*(){var e;yield new Me(null===(e=this.campaign)||void 0===e?void 0:e.permissions).show(e=>{this.campaign.permissions=e,this.saveCampaign(void 0,!0)})}),"Edit permissions");r.classList.add("hit-design-submit-button");const l=oe(n);return n.push([a,...this.hasEditPermission?[s]:[],...l?[]:[r]]),i.setRibbonPanels(n),i.name=this._filterViewName,setTimeout(()=>Ke(this,void 0,void 0,function*(){var t,n,a;i._onAdded(),yield new Promise(e=>setTimeout(e,1e3));const r=i.filters(this._campaignFilters?{filters:this._campaignFilters}:void 0),s=null!==(n=null===(t=this._campaign)||void 0===t?void 0:t.layout)&&void 0!==n?n:null===(a=this.template)||void 0===a?void 0:a.layoutViewState;if(s)try{const e=o.ViewLayout.fromViewState(s);i.loadLayout(e)}catch(e){console.error(e)}i.dataFrame.onFilterChanged.subscribe(e=>{this._filterDescriptions=Array.from(i.dataFrame.rows.filters),this._campaignFilters=r.getOptions().look.filters}),setTimeout(()=>{this._filterDescriptions=Array.from(i.dataFrame.rows.filters),this._campaignFilters=r.getOptions().look.filters},300),e&&e()}),300),i.parentCall=this.parentCall,i}getSummary(){var e,i,n,o,a,r,s;const l=null!==(i=null===(e=this.campaign)||void 0===e?void 0:e.campaignFields)&&void 0!==i?i:this.campaignProps;return Object.assign(Object.assign({Template:null!==(o=null===(n=this.template)||void 0===n?void 0:n.name)&&void 0!==o?o:"Molecules","File path":t.divH([t.link(null!==(a=this._dfName)&&void 0!==a?a:"-",()=>this.download(this.dataFrame,"molecules"),x)],{style:{alignItems:"center"}})},l),{"Number of molecules":this.dataFrame.rowCount.toString(),"Enrichment methods":[this.template.compute.descriptors.enabled?"descriptors":"",...this.template.compute.functions.map(e=>e.name)].filter(e=>e&&""!==e.trim()).join(", "),Filters:this._filterDescriptions.join(", "),"Result Molecules":t.divH([t.link(null!==(s=null===(r=this.dataFrame)||void 0===r?void 0:r.filter.trueCount.toString())&&void 0!==s?s:"0",()=>{this.download(this.dataFrame,"hits",!0)},x)],{style:{alignItems:"center"}})})}saveCampaign(i){return Ke(this,arguments,void 0,function*(i,n=!0){var a,r,l,d,c,u,p,m,h,v;const f=this.campaignId,g=this.filterSettings,y=this.template.name,w=this.dataFrame,b=`System:AppData/HitTriage/Hit Triage/campaigns/${f}/`,C=null!=f?f:yield function(e){return Ye(this,void 0,void 0,function*(){return new Promise(i=>Ye(this,void 0,void 0,function*(){const n=t.input.string("Campaign name",{value:""});t.dialog("Save Campaign").add(t.div(n.root)).onOK(function(){n.value&&""!==n.value?i(n.value):i(e)}).show()}))})}(f),A={};w.columns.toList().forEach(e=>A[e.name]=e.semType);const T={};w.columns.toList().forEach(e=>T[e.name]=e.type);const S=null!==(r=null===(a=this.campaign)||void 0===a?void 0:a.authorUserId)&&void 0!==r?r:e.shell.user.id,x=null!==(d=null===(l=this.campaign)||void 0===l?void 0:l.permissions)&&void 0!==d?d:Be,I={name:C,templateName:y,filters:null!=g?g:{},ingest:{type:"File",query:`${b}${s}`,molColName:this.molColName},status:null!==(u=null!=i?i:null===(c=this.campaign)||void 0===c?void 0:c.status)&&void 0!==u?u:"In Progress",createDate:null!==(m=null===(p=this.campaign)||void 0===p?void 0:p.createDate)&&void 0!==m?m:ee(new Date),campaignFields:null!==(v=null===(h=this.campaign)||void 0===h?void 0:h.campaignFields)&&void 0!==v?v:this.campaignProps,columnSemTypes:A,rowCount:w.rowCount,filteredRowCount:w.filter.trueCount,template:this.template,columnTypes:T,authorUserId:S,permissions:x};if(this.campaign=I,!this.hasEditPermission)return e.shell.error("You do not have permission to modify this campaign"),I;const N=o.DataFrame.fromColumns(w.columns.toList().filter(e=>!e.name.startsWith("~"))).toCsv();yield Gt.files.writeAsText(`Hit Triage/campaigns/${f}/${s}`,N);const E=this._pickView.saveLayout();return E?I.layout=E.viewState:e.shell.warning("Layout cound not be saved"),yield Gt.saveCampaignJson(this.appName,I),n&&e.shell.info("Campaign saved successfully."),I})}}function Ze(i,n=!1){var a,r;const s=o.DataFrame.create(1);if(n){const e=s.columns.addNew(v,o.TYPE.STRING);e.semType=o.SEMTYPE.MACROMOLECULE,e.meta.units="helm",e.setTag("units","helm"),e.setTag("cell.renderer","helm"),e.setTag(".alphabetIsMultichar","true")}const l=s.columns.addNew(h,o.TYPE.STRING);l.semType=o.SEMTYPE.MOLECULE,l.meta.units=o.UNITS.Molecule.SMILES,l.set(0,null),(null===(a=null==i?void 0:i.stages)||void 0===a?void 0:a.length)>0&&s.columns.addNew(m,o.TYPE.STRING).set(0,i.stages[0]),s.columns.addNew(f,o.TYPE.STRING);const d=i.campaignFields.map(e=>e.type===o.SEMTYPE.MOLECULE?Object.assign(Object.assign({},e),{type:"String",semtype:o.SEMTYPE.MOLECULE}):e).map(e=>o.Property.fromOptions(Object.assign({name:e.name,type:ye[e.type],nullable:!e.required},e.semtype?{semType:e.semtype}:{}))),c={},u=t.input.string("Campaing Name",{tooltipText:"New campaign name. If empty, campaign code will be used."}),p=t.input.form(c,d);p.prepend(u.root),p.classList.remove("ui-form");const g=t.div([...(null===(r=i.campaignFields)||void 0===r||r.length,[]),p]),y=t.buttonsInput([]);return g.appendChild(y),{promise:new Promise(n=>{const o=t.bigButton(T,()=>{for(const t of i.campaignFields)if(t.required&&(!c[t.name]||""===c[t.name]))return void e.shell.error(`Field '${t.name}' is required`);n({df:s,campaignProps:c,name:u.value})});y.appendChild(o)}),root:g,cancelPromise:new Promise(e=>{t.button(I,()=>e())})}}var Xe=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function r(e){try{l(n.next(e))}catch(e){a(e)}}function s(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(r,s)}l((n=n.apply(e,t||[])).next())})};function et(i,n){return Xe(this,void 0,void 0,function*(){var a,r,s,l,d,c,p,m,h,v,f;const g=yield Gt.files.list(`${i.appName}/templates`);let b=!1,C=!1;const A=g.map(e=>e.name.slice(0,-5)),T=[];for(const e of g)try{const t=JSON.parse(yield Gt.files.readAsText(e));T.push(t.key)}catch(e){console.error(e)}const x=Array.from(new Set(o.Func.find({meta:{role:u}}).concat(o.Func.find({tags:[u]})))),N={};x.forEach(e=>{var t;N[null!==(t=e.friendlyName)&&void 0!==t?t:e.name]=e});const E=t.input.choice("Submit function",{value:null,items:[null,...Object.keys(N)]});E.nullable=!0,E.value=null!==(r=null===(a=null==n?void 0:n.submit)||void 0===a?void 0:a.fName)&&void 0!==r?r:null,E.setTooltip("Select function to be called upon submitting");const F=t.divText("Template name is empty or already exists",{classes:"hit-triage-error-div"}),_=t.divText("Template key is empty or already exists",{classes:"hit-triage-error-div"}),P=Ie();function L(){var e,t,i,n;if(""===O.value||A.includes(null!==(t=null===(e=O.value)||void 0===e?void 0:e.trim())&&void 0!==t?t:"")){const e=null!==(i=O.input.offsetLeft)&&void 0!==i?i:0,t=null!==(n=O.input.offsetWidth)&&void 0!==n?n:0;F.style.marginLeft=`${e}px`,F.style.width=`${t}px`,F.style.opacity="100%",F.style.borderTop="1px solid red",b=!0}else F.style.borderTop="none",F.style.opacity="0%",b=!1}const O=t.input.string("Name",{value:null!==(s=null==n?void 0:n.name)&&void 0!==s?s:"",onValueChanged:L});function V(){var e,t,i,n;if(""===k.value||T.includes(null!==(t=null===(e=k.value)||void 0===e?void 0:e.trim())&&void 0!==t?t:"")){const e=null!==(i=k.input.offsetLeft)&&void 0!==i?i:0,t=null!==(n=k.input.offsetWidth)&&void 0!==n?n:0;_.style.marginLeft=`${e}px`,_.style.width=`${t}px`,_.style.borderTop="1px solid red",_.style.opacity="100%",C=!0}else _.style.opacity="0%",_.style.borderTop="none",C=!1}const k=t.input.string("Key",{value:null!==(l=null==n?void 0:n.key)&&void 0!==l?l:"",onValueChanged:V});k.setTooltip("Template key used for campaign prefix"),O.setTooltip("Template name"),O.root.style.borderBottom="none",k.root.style.borderBottom="none",F.style.opacity="0%",_.style.opacity="0%";let B=null;const M={compute:{descriptors:{enabled:!0,args:null!==(p=null===(c=null===(d=null==n?void 0:n.compute)||void 0===d?void 0:d.descriptors)||void 0===c?void 0:c.args)&&void 0!==p?p:[]},functions:null!==(h=null===(m=null==n?void 0:n.compute)||void 0===m?void 0:m.functions)&&void 0!==h?h:[]}},D=yield Te(i,e=>{B=e},()=>null,M,!1);D.root.classList.add("hit-triage-new-template-functions-input");const R=Fe(null==n?void 0:n.campaignFields),j=tt(null==n?void 0:n.stages),U=t.divV([t.divV([O,F]),t.divV([k,_]),P.dataFileInput,R.fieldsDiv]),$=t.h2("Stages");t.tooltip.bind($,'Define Stages for designed molecules. For example, "Design", "Synthesis", "Test", etc.');const H=t.h2("Compute");t.tooltip.bind(H,'Define functions to be calculated for each molecule. For example, "Descriptors", "Descriptors:Descriptors", etc.');const q=t.div([t.h2("Details"),U,$,j.fieldsDiv,H,D.root,t.h2("Submit"),E.root],"ui-form"),G=t.buttonsInput([]);q.appendChild(G);const Y=null!==(f=null===(v=G.getElementsByClassName("ui-input-editor"))||void 0===v?void 0:v[0])&&void 0!==f?f:G,W=new Promise(e=>{const i=t.button(I,()=>e());Y.appendChild(i)}),J=new Promise(n=>{const o=t.bigButton(S,()=>function(){return Xe(this,void 0,void 0,function*(){var t,o,a,r,s,l,d;if(L(),V(),D.okProxy(),b||!O.value||""===O.value)return void e.shell.error("Template name is empty or already exists");if(C||!k.value||""===k.value)return void e.shell.error("Template key is empty or already exists");const c=E.value?N[E.value]:void 0,u=Object.assign({name:O.value,key:k.value,campaignFields:R.getFields(),stages:j.getFields(),layoutViewState:null!==(t=P.getLayoutViewState())&&void 0!==t?t:void 0,localLayoutPath:null!==(o=P.getLocalFilePath())&&void 0!==o?o:void 0,compute:{descriptors:{enabled:!!(null===(a=null==B?void 0:B.descriptors)||void 0===a?void 0:a.length),args:null!==(r=null==B?void 0:B.descriptors)&&void 0!==r?r:[]},functions:Object.entries(null!==(s=null==B?void 0:B.externals)&&void 0!==s?s:{}).map(([e,t])=>{const i=e.split(":");return{name:i[1],package:i[0],args:t}}),scripts:Object.entries(null!==(l=null==B?void 0:B.scripts)&&void 0!==l?l:{}).filter(([e,t])=>e.startsWith(y)&&3===e.split(":").length).map(([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}}),queries:Object.entries(null!==(d=null==B?void 0:B.queries)&&void 0!==d?d:{}).filter(([e,t])=>e.startsWith(w)&&3===e.split(":").length).map(([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}})}},c?{submit:{fName:c.name,package:fe(c)}}:{});yield function(e,t){return Xe(this,void 0,void 0,function*(){yield Gt.files.writeAsText(`${t}/templates/${e.name}.json`,JSON.stringify(e))})}(u,i.appName),e.shell.info("Template created successfully"),n(u)})}());Y.appendChild(o)});return{root:q,template:J,cancelPromise:W}})}function tt(e){const t=[o.Property.fromOptions({name:"Name",type:o.TYPE.STRING})],i=new xe(t,e?e.map(e=>({Name:e})):void 0,{horizontalInputNames:!0});let n={};return i.onItemAdded.subscribe(e=>{n={}}),i.onAddingItemChanged.subscribe(e=>{e&&(n=e.item)}),{getFields:function(){const e=i.items.filter(e=>e.Name).map(e=>e.Name);return n.Name&&""!==n.Name&&e.push(n.Name),e},fieldsDiv:i.root,itemsGrid:i}}var it=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function r(e){try{l(n.next(e))}catch(e){a(e)}}function s(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(r,s)}l((n=n.apply(e,t||[])).next())})};class nt extends Pe{constructor(t){super(t),this.currentGroupping="None",this.campaignsTableRoot=null,this.name="Hit Design",e.shell.windows.showHelp=!0,e.shell.windows.help.showHelp(Gt.webRoot+"README_HD.md"),this.checkCampaign().then(e=>{this.app.campaign=e,this.init()})}onActivated(){e.shell.windows.showHelp=!0,e.shell.windows.help.showHelp(Gt.webRoot+"README_HD.md")}getAppHeader(){return Ve.appHeader({iconPath:Gt.webRoot+"/images/icons/hit-design-icon.png",learnMoreUrl:"https://github.com/datagrok-ai/public/blob/master/packages/HitTriage/README_HD.md",description:"-  Configure your own workflow using the template editor\n-  Sketch molecules in the molecular spreadsheet\n-  Annotate and share ideas with the team\n-  Calculate different molecular properties\n-  Save campaigns and continue from where you left off\n-  Submit final selection to the function of your choice"})}refreshCampaignsTable(){return it(this,void 0,void 0,function*(){if(null!=this.campaignsTableRoot){t.setUpdateIndicator(this.campaignsTableRoot,!0);try{const e=yield this.getCampaignsTable();t.setUpdateIndicator(this.campaignsTableRoot,!1),t.empty(this.campaignsTableRoot),this.campaignsTableRoot.appendChild(e)}catch(t){e.shell.error("Failed to update campaigns table"),console.error(t)}finally{t.setUpdateIndicator(this.campaignsTableRoot,!1)}}})}init(e){return it(this,void 0,void 0,function*(){t.setUpdateIndicator(this.root,!0);try{const i=t.h1(N),n=t.h1(E,{style:{marginLeft:"10px"}}),a=this.getAppHeader(),r=t.div(),s=t.divH([]),l=t.div([s,r],"ui-form"),d=yield this.getCampaignsTable();this.campaignsTableRoot=t.div([d],{style:{position:"relative"}});const c=t.iconFA("layer-group",()=>it(this,void 0,void 0,function*(){const e=o.Menu.popup();Object.values(B).forEach(t=>{e.item(t,()=>it(this,void 0,void 0,function*(){ue(t),yield this.refreshCampaignsTable()}))});const t=e.group("Campaign Fields"),i=yield Gt.loadCampaigns(this.app.appName,this.deletedCampaigns),n=new Set;Object.values(i).forEach(e=>{e.campaignFields&&Object.keys(e.campaignFields).forEach(e=>n.add(e))}),Array.from(n).forEach(e=>{t.item(e,()=>it(this,void 0,void 0,function*(){ue(`campaignFields.${e}`),yield this.refreshCampaignsTable()}))}),e.show({element:m,x:120,y:m.offsetTop+30})}));c.style.marginBottom="9px",c.style.marginLeft="8px",c.style.fontSize="15px",c.style.color="var(--blue-1)",t.tooltip.bind(c,()=>`Group Campaigns. Current: ${this.currentGroupping}`);const u=t.iconFA("eye",()=>it(this,void 0,void 0,function*(){const e=o.Menu.popup(),t=yield Gt.loadCampaigns(this.app.appName,this.deletedCampaigns),i=Object.assign({},M);delete i.Name,Object.values(t).forEach(e=>{e.campaignFields&&Object.keys(e.campaignFields).forEach(e=>{i[`campaignFields.${e}`]=t=>{var i,n;return null!==(n=null===(i=t.campaignFields)||void 0===i?void 0:i[e])&&void 0!==n?n:""}})});const n=pe().reduce((e,t)=>(e[t]=!0,e),{});Object.keys(i).filter(e=>!e.startsWith("campaignFields.")).forEach(t=>{var i;e.item(t,()=>{n[t]=!n[t],me(Object.keys(n).filter(e=>n[e])),this.refreshCampaignsTable()},null,{check:null!==(i=n[t])&&void 0!==i&&i})});const a=e.group("Campaign Fields");Object.keys(i).filter(e=>e.startsWith("campaignFields.")).forEach(e=>{var t;a.item(e.replace("campaignFields.",""),()=>{n[e]=!n[e],me(Object.keys(n).filter(e=>n[e])),this.refreshCampaignsTable()},null,{check:null!==(t=n[e])&&void 0!==t&&t})}),e.show({element:m,x:100,y:m.offsetTop+30})}));t.tooltip.bind(u,"Edit visible columns in campaigns table"),u.style.marginBottom="9px",u.style.marginLeft="8px",u.style.fontSize="15px",u.style.color="var(--blue-1)";const p=t.iconFA("sync",()=>it(this,void 0,void 0,function*(){yield this.refreshCampaignsTable()}));p.style.marginBottom="9px",p.style.marginLeft="8px",p.style.color="var(--blue-1)",t.tooltip.bind(p,()=>"Refresh campaigns table");const m=t.divH([i,u,c,p],{style:{alignItems:"center"}});Ce()(this.root).empty(),this.root.appendChild(t.div([t.divV([a,m],{style:{marginLeft:"10px"}}),this.campaignsTableRoot,n,l],{classes:"hit-triage-info-view-container"})),yield this.startNewCampaign(r,s,e)}finally{t.setUpdateIndicator(this.root,!1)}})}startNewCampaign(i,n,o){return it(this,void 0,void 0,function*(){var a;const r=(yield Gt.files.list(`${this.app.appName}/templates`)).filter(e=>e.name.endsWith(".json")).map(e=>e.name.slice(0,-5));o&&!r.includes(o.name)&&r.push(o.name);let s=null,l=!0;const d=()=>it(this,void 0,void 0,function*(){if(!l)return;const e=c.value,t=o&&o.name===e?o:JSON.parse(yield Gt.files.readAsText(`${this.app.appName}/templates/${e}.json`));s=t;const n=yield this.getNewCampaignAccordeon(t);Ce()(i).empty(),i.appendChild(n)}),c=t.input.choice("Template",{value:null!==(a=null==o?void 0:o.name)&&void 0!==a?a:r[0],items:r,onValueChanged:()=>it(this,void 0,void 0,function*(){yield d()})});c.root.style.width="100%";const u=t.icons.add(()=>{this.createNewTemplate()},A),p=t.icons.copy(()=>{s&&this.createNewTemplate(s)},"Clone template"),m=t.icons.delete(()=>{!c.value||c.items.length<2||t.dialog("Delete template").add(t.divText(`Are you sure you want to delete template ${c.value}?`)).onOK(()=>it(this,void 0,void 0,function*(){try{const t=c.value;yield Gt.files.delete(`${this.app.appName}/templates/${t}.json`),l=!1,c.items=c.items.filter(e=>e!==t),c.value=c.items[0],l=!0,yield d(),e.shell.info("Template "+t+" was deleted successfully")}catch(t){l=!0,e.shell.error("Failed to delete template "+c.value),console.error(t)}})).show()},"Delete template");m.style.color="var(--blue-1)",u.style.color="#2083d5",c.addOptions(u),c.addOptions(p),c.addOptions(m),yield d(),Ce()(n).empty(),n.appendChild(c.root)})}checkCampaign(e){return it(this,void 0,void 0,function*(){var t;const i=location.search,n=new URLSearchParams(i);if(!n.has(r)&&!e)return;const o=null!=e?e:n.get(r);if(!(yield Gt.files.exists(`${this.app.appName}/campaigns/${o}/${l}`)))return;const a=JSON.parse(yield Gt.files.readAsText(`${this.app.appName}/campaigns/${o}/${l}`));if(a){if(a.authorUserId&&a.permissions&&!(yield le(a.authorUserId,a.permissions)))return void this.app.setBaseUrl();this.app.campaign=a}const s=null!==(t=a.template)&&void 0!==t?t:JSON.parse(yield Gt.files.readAsText(`${this.app.appName}/templates/${a.templateName}.json`));return yield this.app.setTemplate(s,o),e&&te(r,e),a.template=s,a})}getCampaignsTable(){return it(this,void 0,void 0,function*(){const i=yield Gt.loadCampaigns(this.app.appName,this.deletedCampaigns),n=null!==(a=de(O))&&void 0!==a?a:B.None;var a;const r=function(){const e=de(k);return e?JSON.parse(e):null}(),s=Object.values(i);r&&function(e,t){if(!t)return;const i=t.columnName in M?M[t.columnName]:e=>{var i,n,o;return null!==(o=null===(i=e.campaignFields)||void 0===i?void 0:i[null!==(n=t.columnName.replace("campaignFields.",""))&&void 0!==n?n:""])&&void 0!==o?o:""},n=new Map;e.forEach(e=>{n.set(e,i(e))});const o=Array.from(n.values()).every(e=>{var t;return ge(e)||!isNaN(Number(null!==(t=null==e?void 0:e.toString())&&void 0!==t?t:""))}),a=!o&&Array.from(n.values()).every(e=>{var t;return ge(e)||!isNaN(Date.parse(null!==(t=null==e?void 0:e.toString())&&void 0!==t?t:""))});o?e.forEach(e=>{n.set(e,ge(n.get(e))?t.ascending?1/0:-1/0:Number(n.get(e)))}):a&&e.forEach(e=>{var i,o;n.set(e,ge(n.get(e))?t.ascending?1/0:-1/0:Date.parse(null!==(o=null===(i=n.get(e))||void 0===i?void 0:i.toString())&&void 0!==o?o:""))}),e.sort((e,i)=>{const r=n.get(e),s=n.get(i);if(o||a)return t.ascending?r-s:s-r;const l=ge(r)?"":r.toString(),d=ge(s)?"":s.toString();return t.ascending?l.localeCompare(d):d.localeCompare(l)}),n.clear()}(s,r);const l=function(e,t){if(t===B.None)return{"":e};const i={};for(const n of e){const e=he(t,n);i[e]||(i[e]=[]),i[e].push(n)}return i}(s,n),d=pe();this.currentGroupping=n,this.app.existingStatuses=Array.from(new Set(s.map(e=>e.status).filter(e=>!!e)));const c=i=>{var n,a;const r=t.icons.delete(()=>it(this,void 0,void 0,function*(){t.dialog("Delete campaign").add(t.divText(`Are you sure you want to delete campaign ${i.name}?`)).onOK(()=>it(this,void 0,void 0,function*(){yield this.deleteCampaign(this.app.appName,i.name),this.deletedCampaigns.push(i.name),yield this.init()})).show()}),"Delete campaign"),s=t.iconFA("share",()=>it(this,void 0,void 0,function*(){yield new Me(i.permissions).show(t=>it(this,void 0,void 0,function*(){var n;try{i.permissions=t,null!==(n=i.authorUserId)&&void 0!==n||(i.authorUserId=e.shell.user.id),yield Gt.saveCampaignJson(this.app.appName,i),e.shell.info("Permissions updated for campaign "+i.name)}catch(t){e.shell.error("Failed to update permissions for campaign "+i.name),console.error(t)}}))}),"Manage campaign permissions");return r.style.display="none",s.style.display="none",se(null!==(n=i.authorUserId)&&void 0!==n?n:o.User.current().id,null!==(a=i.permissions)&&void 0!==a?a:Be).then(e=>{e&&(r.style.display="inline-block",s.style.display="inline-block")}),r.style.color="var(--blue-1)",s.style.color="var(--blue-1)",[s,r]},u=t.table(Object.values(l).flat(),e=>{var i;return[t.link(null!==(i=e.friendlyName)&&void 0!==i?i:e.name,()=>this.setCampaign(e.name),"Continue Campaign",""),...d.map(t=>{var i,n,o;return t.startsWith("campaignFields.")?null!==(n=null===(i=e.campaignFields)||void 0===i?void 0:i[t.replace("campaignFields.","")])&&void 0!==n?n:"":null!==(o=M[t](e))&&void 0!==o?o:""}),...c(e)]},["Name",...d.map(e=>e.replace("campaignFields.","")),"",""]);return u.style.color="var(--grey-5)",u.style.marginLeft="24px",u.querySelectorAll("tr.header > td").forEach((e,i)=>{if(!e.textContent)return;const n=0===i?"Name":d[i-1];if(r&&n===r.columnName){const i=r.ascending?"↑":"↓";e.appendChild(t.span([i],{style:{fontSize:"12px",marginLeft:"2px"}}))}e.addEventListener("dblclick",()=>{let e={columnName:n,ascending:!0};var t;r&&n===r.columnName&&(e=r.ascending?{columnName:n,ascending:!1}:null),(t=e)?ce(k,JSON.stringify(t)):localStorage.removeItem(k),this.refreshCampaignsTable()})}),function(e,i,n=9){e.classList.add("hit-design-groupped-campaigns-table");const o=Object.keys(i);if(o.length<2)return e;const a=e.getElementsByTagName("tbody")[0],r=Array.from(e.getElementsByTagName("tr")).filter(e=>!e.classList.contains("header"));let s=0;const l=(e,t,i)=>{var n;for(let o=t;o<i;o++)(null===(n=r[o])||void 0===n?void 0:n.style)&&(r[o].style.display=e?"table-row":"none")};for(const e of o){const o=r[s];if(!o)break;const d=i[e].length,c=s,u=s+d,p=t.accordion(`Hit-Design-campaigns-group-${e}`).addPane(e,()=>t.div(),void 0,void 0,!1);p.root.style.marginLeft="-24px",p.root.onclick=()=>{l(p.expanded,c,u)},l(p.expanded,c,u);const m=a.insertRow(0),h=m.insertCell(0);h.appendChild(p.root),h.colSpan=n,a.insertBefore(m,o),s+=d}}(u,l),u})}setCampaign(e){return it(this,void 0,void 0,function*(){const t=yield this.checkCampaign(e);this.app.campaign=t})}getNewCampaignAccordeon(e){return it(this,void 0,void 0,function*(){const{root:t,promise:i,cancelPromise:n}=Ze(e);return i.then(t=>it(this,void 0,void 0,function*(){var i,n;this.app.clearCampaign(),this.app.dataFrame=t.df,yield this.app.setTemplate(e),this.app.campaignProps=t.campaignProps;const o=(null===(i=t.name)||void 0===i?void 0:i.trim())?null===(n=t.name)||void 0===n?void 0:n.trim():void 0;yield this.app.saveCampaign(!1,!0,{friendlyName:o}),e.layoutViewState&&this.app.campaign&&(this.app.campaign.layout=e.layoutViewState)})),n.then(()=>{this.init()}),t})}createNewTemplate(i){return it(this,void 0,void 0,function*(){t.setUpdateIndicator(this.root,!0);try{const t=yield et(this.app,i),n=new o.ViewBase,a=e.shell.v;n.name="New Template",n.root.appendChild(t.root),n.parentCall=this.app.parentCall,e.shell.addView(n),n.path=new URL(this.app.baseUrl).pathname+"/new-template";const{sub:r}=ie(n,this.app.appName,A,()=>it(this,void 0,void 0,function*(){e.shell.v=a,n.close()}));t.template.then(t=>it(this,void 0,void 0,function*(){yield this.init(t),n.close(),ne(n),e.shell.v=a,r.unsubscribe()})),t.cancelPromise.then(()=>it(this,void 0,void 0,function*(){r.unsubscribe(),n.close(),e.shell.v=a}))}finally{t.setUpdateIndicator(this.root,!1)}})}}class ot extends Pe{constructor(e){var i;super(e),this.name="Submit",this.statusInput=t.input.string("Status",{value:null===(i=this.app.campaign)||void 0===i?void 0:i.status,nullable:!1}),this.statusSuggestionsMenu=o.Menu.popup(),this.statusInput.root.style.marginLeft="12px",this.content=t.div(),this.statusInput.onChanged.subscribe(()=>{var e,t,i,n;this.statusSuggestionsMenu.clear();const o=(null!==(e=this.statusInput.value)&&void 0!==e?e:"").toLowerCase(),a=this.app.existingStatuses.filter(e=>{var t;return(null===(t=null==e?void 0:e.toLowerCase())||void 0===t?void 0:t.includes(o))&&(null==e?void 0:e.toLowerCase())!==o}).filter((e,t)=>t<5);if(a.length){if(a.forEach(e=>{this.statusSuggestionsMenu.item(e,()=>{this.statusInput.value=e,this.statusSuggestionsMenu.root.remove(),this.statusInput.root.focus()})}),null===(t=this.content.parentElement)||void 0===t?void 0:t.parentElement){const e=this.statusInput.root.offsetLeft+(null!==(n=null===(i=this.statusInput.input)||void 0===i?void 0:i.offsetLeft)&&void 0!==n?n:0),t=this.statusInput.root.offsetTop+this.statusInput.root.offsetHeight+this.content.parentElement.offsetTop;this.statusSuggestionsMenu.show({element:this.content.parentElement.parentElement,x:e,y:t})}}else this.statusSuggestionsMenu.root.remove()})}getStatus(){var e,t,i;return null!==(i=null!==(e=this.statusInput.value)&&void 0!==e?e:null===(t=this.app.campaign)||void 0===t?void 0:t.status)&&void 0!==i?i:"No Status"}render(){var e,i,n;this.statusInput.value=null!==(i=null===(e=this.app.campaign)||void 0===e?void 0:e.status)&&void 0!==i?i:"",t.empty(this.content),this.content=t.divV([t.h1("Summary"),t.div([t.tableFromMap(this.app.getSummary())]),this.statusInput.root]);const a=t.dialog("Submit");a.add(this.content),a.addButton("Save",()=>{this.app.campaign.status=this.getStatus(),this.app.saveCampaign(),a.close()}),a.show();const r=Array.from(new Set(o.Func.find({meta:{role:u}}).concat(o.Func.find({tags:[u]})))),s=r.reduce((e,t)=>{var i;return e[null!==(i=t.friendlyName)&&void 0!==i?i:t.name]=t,e},{});if(r.length>0){const e=this.app.submitParams,i=e?r.find(t=>t.name===e.fName&&fe(t)==e.package):void 0,o=null!==(n=null==i?void 0:i.friendlyName)&&void 0!==n?n:null==i?void 0:i.name,l=t.input.choice("Submit function",{value:o,items:[...Object.keys(s)],nullable:!0});l.onChanged.subscribe(()=>{var e,t;const i=s[null!==(e=l.value)&&void 0!==e?e:""];this.app.campaign.template.submit=i?{fName:i.name,package:fe(i)}:void 0,null===(t=a.getButton("Submit"))||void 0===t||t.remove(),i&&a.addButton("Submit",()=>{this.submit(),a.close()},void 0,"Submit the campaign file to the specified function")}),l.fireChanged(),this.content.appendChild(l.root)}}onActivated(){}submit(){return t=this,i=void 0,a=function*(){const t=this.app.submitParams;if(!t)return void e.shell.error("No submit function selected. Please select a function to submit the campaign.");const i=o.Func.find({name:t.fName,package:t.package})[0];if(!i)return void e.shell.error(`Function ${t.fName} not found.`);const n=o.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield i.apply({df:n,molecules:this.app.molColName}),this.app.campaign.status=this.getStatus(),this.app.saveCampaign(),e.shell.info("Submitted successfully.")},new((n=void 0)||(n=Promise))(function(e,o){function r(e){try{l(a.next(e))}catch(e){o(e)}}function s(e){try{l(a.throw(e))}catch(e){o(e)}}function l(t){var i;t.done?e(t.value):(i=t.value,i instanceof n?i:new n(function(e){e(i)})).then(r,s)}l((a=a.apply(t,i||[])).next())});var t,i,n,a}}var at=i(542),rt={};rt.styleTagTransform=K(),rt.setAttributes=Y(),rt.insert=q().bind(null,"head"),rt.domAPI=$(),rt.insertStyleElement=J(),j()(at.A,rt),at.A&&at.A.locals&&at.A.locals;function st(i,n){var a,r,s,l,d,c,u,p,h,v;const f=null===(a=i.campaign)||void 0===a?void 0:a.tilesViewerFormSketch;let g=null;if(f&&f.length>0)try{g=JSON.parse(f)}catch(e){console.error("Failed to parse sketch state string",e)}g&&g.elementStates&&(null!==(r=g.elementStates.length)&&void 0!==r?r:0)>0&&(g.elementStates=g.elementStates.filter(e=>{var t;return(null===(t=null==e?void 0:e.viewerSettings)||void 0===t?void 0:t.column)&&i.dataFrame.col(e.viewerSettings.column)}),g.elementStates.forEach(e=>{var t;(null===(t=null==e?void 0:e.viewerSettings)||void 0===t?void 0:t.table)&&(e.viewerSettings.table=i.dataFrame.name)}));const y=Object.assign({lanesColumnName:m,lanes:i.stages},(null!==(l=null===(s=null==g?void 0:g.elementStates)||void 0===s?void 0:s.length)&&void 0!==l?l:0)>0?{sketchState:g}:{}),w=n();if(!w)return void e.shell.error("Failed to create tiles viewer. table view is not available.");let b=null;const C=t.dialog("Progress Tracker");try{b=w.addViewer(o.VIEWER.TILE_VIEWER,y);const e=b.getOptions();e.look.sketchState=(null!==(c=null===(d=null==g?void 0:g.elementStates)||void 0===d?void 0:d.length)&&void 0!==c?c:0)>0?g:null,b.setOptions(e),b.copyViewersLook(b)}catch(t){e.shell.error("Failed to create tiles viewer with preset layout.\n Falling back to default layout."),console.error("Failed to create tiles viewer",t),b&&(b.close(),b.detach()),b=w.addViewer(o.VIEWER.TILE_VIEWER,{lanesColumnName:m,lanes:i.stages})}if(!b)return void e.shell.error("Failed to create tiles viewer. check the console for more details.");let A=null;const T=()=>{try{b.detach(),b.close()}catch(e){}};C.add(b.root),C.addButton("Modify Stages",()=>{null==A||A.close();const o=tt(i.stages);A=t.dialog("Modify Stages").add(o.fieldsDiv).onOK(()=>{return a=this,r=void 0,l=function*(){T(),t.setUpdateIndicator(C.root,!0);try{yield i.setStages(o.getFields()),t.setUpdateIndicator(C.root,!1),C.close(),yield new Promise(e=>setTimeout(()=>{e(),st(i,n)},100))}catch(t){e.shell.error("Failed to update stages. check the console for more details."),console.error("Failed to update stages",t)}finally{(null==C?void 0:C.root)&&document.contains(C.root)&&C.close()}},new((s=void 0)||(s=Promise))(function(e,t){function i(e){try{o(l.next(e))}catch(e){t(e)}}function n(e){try{o(l.throw(e))}catch(e){t(e)}}function o(t){var o;t.done?e(t.value):(o=t.value,o instanceof s?o:new s(function(e){e(o)})).then(i,n)}o((l=l.apply(a,r||[])).next())});var a,r,s,l}).show(),A.root.classList.add("hit-design-stage-editing-dialog")},0);const S=e.events.onCurrentViewChanged.subscribe(()=>{e.shell.v===w?C.root.style.display="flex":C.root.style.setProperty("display","none","important")}),x=null===(p=null===(u=i.dataFrame)||void 0===u?void 0:u.col(m))||void 0===p?void 0:p.version,I=C.onClose.subscribe(()=>{var t,n;I.unsubscribe(),S.unsubscribe(),null==A||A.close();try{const e=b.props.sketchState;if(e&&"object"==typeof e){const t=JSON.stringify(e);i.campaign&&(i.campaign.tilesViewerFormSketch=t)}}catch(t){e.shell.error("Failed to save sketch state. check the console for more details."),console.error("Failed to save sketch state",t)}T(),null!=x&&(null===(n=null===(t=i.dataFrame)||void 0===t?void 0:t.col(m))||void 0===n?void 0:n.version)!==x&&i.saveCampaign()});C.showModal(!0),null===(h=C.getButton("CANCEL"))||void 0===h||h.remove(),C.onOK(()=>{}),null===(v=document.querySelector(".d4-modal-background"))||void 0===v||v.remove()}const lt=rxjs.operators;var dt=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function r(e){try{l(n.next(e))}catch(e){a(e)}}function s(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(r,s)}l((n=n.apply(e,t||[])).next())})};const ct="defaultCampaignFolder",ut="System.AppData/HitTriage";function pt(t){return dt(this,void 0,void 0,function*(){if(!t)return[yield e.dapi.groups.find(o.Group.defaultGroupsIds["All users"])].filter(Boolean);try{const i=JSON.parse(t);return(yield Promise.all(i.map(t=>e.dapi.groups.find(t)))).filter(Boolean)}catch(t){return console.error(t),[yield e.dapi.groups.find(o.Group.defaultGroupsIds["All users"])].filter(Boolean)}})}var mt=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function r(e){try{l(n.next(e))}catch(e){a(e)}}function s(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(r,s)}l((n=n.apply(e,t||[])).next())})};function ht(e){var t;const i=null===(t=Gt.meta)||void 0===t?void 0:t.sok;if(!i)throw new Error("Secret key for SMILES obfuscation is not set");let n="";for(let t=0;t<e.length;t++){const o=e.charCodeAt(t),a=i.charCodeAt(t%i.length);n+=String.fromCharCode(o^a)}return btoa(n)}function vt(){var e,t,i;const n=o.User.current();return null!==(i=null!==(t=null!==(e=null==n?void 0:n.login)&&void 0!==e?e:null==n?void 0:n.friendlyName)&&void 0!==t?t:n.name)&&void 0!==i?i:"unknown user"}function ft(t,i,n){return mt(this,void 0,void 0,function*(){const o=Gt.convertToSmiles(t);if(!o||""===o||"MALFORMED_INPUT_VALUE"===o)return"";const a=ht(o),r=yield Ue.addMolecule(a,n,i,vt());return 0!==r.rowCount&&r.col("vid")?r.col("vid").getString(0):(e.shell.error("Molecule registration returned no data"),"")})}function gt(t,i,n){return mt(this,void 0,void 0,function*(){const o=new Map,a=new Map;if(t.forEach((e,t)=>{const i=Gt.convertToSmiles(e);i&&""!==i&&"MALFORMED_INPUT_VALUE"!==i&&(a.has(i)||a.set(i,[]),a.get(i).push(t))}),0===a.size)return o;const r=Array.from(a.keys());for(let s=0;s<r.length;s+=50){const l=r.slice(s,s+50);if(0!==l.length)try{const e=l.map(e=>ht(e)),r=yield Ue.addMolecules(e,n,i,vt());if(!r||r.rowCount!==l.length||!r.col("vid"))throw console.error("Molecule registration returned incomplete data for batch",`${s}-${s+l.length}`,`Batch size: ${l.length}, Result rows: ${null==r?void 0:r.rowCount}. Vid column found: ${!!(null==r?void 0:r.col("vid"))}`),new Error("Resulting molecule registration has no or incomplete data");const d=r.col("vid").toList();for(let e=0;e<r.rowCount;e++){const i=a.get(l[e]),n=d[e];for(const e of i)o.set(t[e],n)}}catch(t){e.shell.error("Error registering molecules batch. see console for details."),Gt.logger.error(t)}}return o})}var yt=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function r(e){try{l(n.next(e))}catch(e){a(e)}}function s(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(r,s)}l((n=n.apply(e,t||[])).next())})};class wt extends Ge{get infoView(){return this._infoView}get version(){var e,t;return null!==(t=null===(e=this._campaign)||void 0===e?void 0:e.version)&&void 0!==t?t:0}constructor(e,t="Hit Design",i=e=>new nt(e)){super(e,t),this._designViewName="Design",this._filePath=`System.AppData/HitTriage/${this.appName}/campaigns`,this._molColName=h,this.campaignProps={},this.existingStatuses=[],this._refreshIconTooltip="Refresh Campaign",this._updateCheckIntervalId=null,this._needsRefresh=!1,this._lastExpiresTimeString=null,this._refreshCampaignIcon=null,this._gridSubs=null,this._isSaving=!1,this._infoView=i(this),this.multiView=new o.MultiView({viewFactories:{[this._infoView.name]:()=>this._infoView}}),this.multiView.subs.push(this.multiView.tabs.onTabChanged.subscribe(e=>{this.multiView.currentView instanceof Pe&&this.multiView.currentView.onActivated()})),this.multiView.parentCall=e,this.mainView=this.multiView,this._initViewSubs()}handleJoiningDataframe(i){return yt(this,void 0,void 0,function*(){var n,a,r,s,l,d;const c=i.columns.bySemTypeAll(o.SEMTYPE.MOLECULE);if(!c||0===c.length)return void e.shell.error("No molecule column found");let u=null;if(c.length>1){const i=c.map(e=>e.name),o=null!==(n=c.find(e=>{var t,i;return"smiles"===(null===(t=null==e?void 0:e.name)||void 0===t?void 0:t.toLowerCase())||"molecule"===(null===(i=null==e?void 0:e.name)||void 0===i?void 0:i.toLowerCase())}))&&void 0!==n?n:c[0],a=t.input.choice("Primary Molecule Column",{items:i,value:o.name,nullable:!1}),r=new Promise(e=>{t.dialog("Select Primary Molecule Column").add(t.divText("Multiple molecule columns found. Please select the primary molecule column to be used for calculations.")).add(a).onOK(()=>e(a.value)).onCancel(()=>e(null)).show()});if(u=yield r,!u)return void e.shell.info("Operation cancelled by user")}else u=c[0].name;const p=i.col(u);if(!p)return void e.shell.error("No molecule column found");const v=null!==(s=null===(r=null===(a=this.campaign)||void 0===a?void 0:a.template)||void 0===r?void 0:r.compute)&&void 0!==s?s:null===(l=this.template)||void 0===l?void 0:l.compute;if(!v)return void e.shell.warning("No compute functions found");const g=p.toList(),y=v.descriptors.enabled&&null!==(d=v.descriptors.args)&&void 0!==d?d:[],w=yield Je(g,y,v.functions,v.scripts,v.queries);if(this.unionDataframes(w,i,h,p.name),this.stages.length>0&&this.dataFrame.columns.contains(m)){const e=i.columns.getOrCreate(m,o.TYPE.STRING);for(let t=0;t<i.rowCount;t++)e.isNone(t)&&e.set(t,this.stages[0],!1)}i.columns.contains(f)&&i.columns.remove(f);const b=i.columns.addNewString(f),C=yield gt(g,this._campaignId,this.appName);for(let e=0;e<i.rowCount;e++){const t=p.get(e),i=C.get(t);i&&b.set(e,i)}this.unionDataframes(i,this.dataFrame,p.name,this.molColName),this.saveCampaign(!1)})}get submitParams(){var e,t,i,n;return null!==(i=null===(t=null===(e=this.campaign)||void 0===e?void 0:e.template)||void 0===t?void 0:t.submit)&&void 0!==i?i:null===(n=this.template)||void 0===n?void 0:n.submit}_initViewSubs(){this.multiView.subs.push(e.events.onCurrentViewChanged.subscribe(()=>yt(this,void 0,void 0,function*(){var t,i,n,o;try{if(e.shell.v===this._designView){e.shell.windows.showHelp=!1,this.setBaseUrl(),te(a,null!==(n=null!==(t=this._campaignId)&&void 0!==t?t:null===(i=this._campaign)||void 0===i?void 0:i.name)&&void 0!==n?n:"");const{sub:r}=ie(e.shell.v,this.appName,null===(o=e.shell.v)||void 0===o?void 0:o.name,()=>{var t;e.shell.v=this.mainView,null===(t=this._designView)||void 0===t||t.close(),this._infoView.init(),r.unsubscribe()})}else e.shell.v===this.mainView&&this.setBaseUrl()}catch(e){console.error(e)}}))),this.multiView.subs.push(e.events.onFileImportRequest.subscribe(t=>{var i,n;if(!e.shell.tv||!this._designView||e.shell.tv!==this._designView)return;if(!(null===(i=null==t?void 0:t.args)||void 0===i?void 0:i.file))return;const o=t.args.file;((null===(n=o.name)||void 0===n?void 0:n.endsWith(".csv"))||Ge.molFileExtReaders.some(e=>{var t;return null===(t=o.name)||void 0===t?void 0:t.endsWith(e.ext)}))&&(t.preventDefault(),this.handleUploadingDataframe(o))}))}handleUploadingDataframe(i){return yt(this,void 0,void 0,function*(){var n;try{let a=null;if(i.name.endsWith(".csv"))a=o.DataFrame.fromCsv(yield i.text());else{const t=yield new Promise(e=>yt(this,void 0,void 0,function*(){const t=new FileReader;let n=null,o=null;t.onload=()=>{o=t.result?new Uint8Array(t.result):null,n&&clearTimeout(n),e(o)},t.readAsArrayBuffer(i),n=setTimeout(()=>{t.abort(),e(null)},1e4)}));if(!t)return void e.shell.error("Failed to read file");const n=Ge.molFileExtReaders.find(e=>i.name.endsWith(e.ext)).handlerFunc,o=n.inputs[0].name;a=(yield n.apply({[o]:t}))[0]}if(!a)throw new Error("Failed to read file");if(a.name=i.name.slice(0,i.name.lastIndexOf(".")),yield a.meta.detectSemanticTypes(),yield e.data.detectSemanticTypes(a),!a.columns.bySemType(o.SEMTYPE.MOLECULE))return void e.shell.addTableView(a);const r=t.dialog("Uploading table with molecules").add(t.divText("Add new table to workspace or join with existing Hit Design campaign")).addButton("Add to workspace",()=>{r.close(),e.shell.addTableView(a)}).addButton("Add to existing campaign",()=>{r.close(),this.handleJoiningDataframe(a)});null===(n=r.getButton("CANCEL"))||void 0===n||n.remove(),r.show()}catch(t){e.shell.error("Hit Design Failed to read file"),console.error(t)}})}get stages(){var e,t,i,n,o;return null!==(o=null!==(i=null===(t=null===(e=this.campaign)||void 0===e?void 0:e.template)||void 0===t?void 0:t.stages)&&void 0!==i?i:null===(n=this.template)||void 0===n?void 0:n.stages)&&void 0!==o?o:[]}setStages(t){return yt(this,void 0,void 0,function*(){var i;if(!this.campaign||!this.campaign.template||!this.template)return void e.shell.error("Campaign or template is not set");if(!(null==t?void 0:t.length))return void e.shell.error("Removing all stages is not allowed");const n=null===(i=this.dataFrame)||void 0===i?void 0:i.col(m);if(!n)return void e.shell.error("No stage column found");const o=[],a=new Set(t),r=[...a],s=this.dataFrame.rowCount,l=n.categories,d=n.getRawData();for(let e=0;e<s;e++){const i=l[d[e]];a.has(i)||(n.set(e,t[0],!1),o.push(i))}o.length>0&&e.shell.warning(`Some stages were removed: (${o.join(", ")}). Corresponding rows were set to stage "${t[0]}"`),this.campaign.template.stages=r,this.template.stages=r,yield this.saveCampaign(!0)})}refreshCampaign(){return yt(this,void 0,void 0,function*(){this._campaignId&&this.template?this._isSaving?e.shell.info("Campaign is being saved. Please wait a moment and try again."):(clearInterval(this._updateCheckIntervalId),this._refreshIconTooltip="Refresh Campaign",yield this.setTemplate(this.template,this._campaignId)):e.shell.warning("No campaign to refresh")})}setTemplate(i,n){return yt(this,void 0,void 0,function*(){var l,d,c,u,p,m,v,f,g,y,w;if(n){const t=`System.AppData/HitTriage/${this.appName}/campaigns`;this._filePath=null!==(c=null===(d=this.campaign)||void 0===d?void 0:d.savePath)&&void 0!==c?c:`${t}/${n}/${s}`,this.dataFrame=yield e.dapi.files.readCsv(this._filePath),(null===(u=this._campaign)||void 0===u?void 0:u.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach(([e,t])=>{const i=this.dataFrame.columns.byName(e);i&&t&&(i.semType=t)}),(null===(p=this._campaign)||void 0===p?void 0:p.columnTypes)&&Object.entries(this._campaign.columnTypes).forEach(([e,t])=>{const i=this.dataFrame.columns.byName(e);if(i&&i.type!==t)try{this.dataFrame.changeColumnType(e,t)}catch(e){console.error(e)}})}else{(null===(l=this._designView)||void 0===l?void 0:l.dataFrame)&&e.shell.closeTable(this._designView.dataFrame),this._designView=void 0,n=yield this.getNewCampaignName(`${this.appName}/campaigns`,i.key),te(r,n);let t=yield function(){return dt(this,void 0,void 0,function*(){var t,i;const n=null!==(t=Gt.settings)&&void 0!==t?t:yield Gt.getSettings();if(!n)return ut;const o=null!==(i=n instanceof Map?n.get(ct):n[ct])&&void 0!==i?i:ut;return(yield e.dapi.files.exists(o))?o:ut})}();t.endsWith("/")||(t+="/"),this._filePath=`${t}${this.appName}/campaigns/${n}/${s}`}if(!this.dataFrame)return e.shell.error("DataFrame is empty"),clearInterval(this._updateCheckIntervalId),void(this._updateCheckIntervalId=null);yield this.dataFrame.meta.detectSemanticTypes(),this._molColName=null!==(v=null===(m=this.dataFrame.columns.bySemType(o.SEMTYPE.MOLECULE))||void 0===m?void 0:m.name)&&void 0!==v?v:h,this._campaignId=n,this.template=i,null!==(f=this._submitView)&&void 0!==f||(this._submitView=new ot(this)),e.shell.windows.showHelp=!1,this.campaign?yield this.setCanEdit(this.campaign):this.hasEditPermission=!0;const b=this.designView;this.currentDesignViewId=b.name,this.setBaseUrl(),te(a,null!==(w=null!==(g=this._campaignId)&&void 0!==g?g:null===(y=this._campaign)||void 0===y?void 0:y.name)&&void 0!==w?w:""),this.campaign&&(this.campaign.template=i),Ue.getLastModified(this.appName,this._campaignId).then(i=>{var n;const o=null===(n=null==i?void 0:i.col("updated_at"))||void 0===n?void 0:n.getString(0);this._lastExpiresTimeString=null!=o?o:null,this._needsRefresh=!1,clearInterval(this._updateCheckIntervalId);let a=!1;this._updateCheckIntervalId=setInterval(()=>yt(this,void 0,void 0,function*(){var i;if(!a&&!this._needsRefresh){if(a=!0,this._designView&&!Array.from(e.shell.tableViews).some(e=>e===this._designView))return clearInterval(this._updateCheckIntervalId),console.log("Clearing campaign update check interval"),this._updateCheckIntervalId=null,void(a=!1);if(this._campaignId&&this.template&&!this._isSaving&&!this.isJoining&&this._designView&&e.shell.v===this._designView){try{const e=yield Ue.getLastModified(this.appName,this._campaignId),n=null===(i=null==e?void 0:e.col("updated_at"))||void 0===i?void 0:i.getString(0);if(!n)return void(a=!1);this._lastExpiresTimeString!==n&&this._refreshCampaignIcon&&(this._lastExpiresTimeString=n,t.hints.addHintIndicator(this._refreshCampaignIcon,!0,1e4),this._refreshIconTooltip="New changes available. Click to refresh campaign.",this._lastExpiresTimeString=n,this._needsRefresh=!0)}catch(e){console.error(e)}a=!1}else a=!1}}),3e3)}).catch(e=>console.error(e))})}get campaignId(){return this._campaignId}get designView(){return this._designView=this.getDesignView()}get designViewName(){return this._designViewName}set designViewName(e){this._designViewName=e,this._designView&&(this._designView.name=e)}get molColName(){var e,t,i,n;return null!==(e=this._molColName)&&void 0!==e?e:this._molColName=null!==(n=null===(i=null===(t=this.dataFrame)||void 0===t?void 0:t.columns.bySemType(o.SEMTYPE.MOLECULE))||void 0===i?void 0:i.name)&&void 0!==n?n:h}get campaign(){return this._campaign}set campaign(e){this._campaign=e}clearCampaign(){this._campaign=void 0}cacheDuplicateVIDs(){var e;const t=null===(e=this.dataFrame)||void 0===e?void 0:e.col(f);if(!t)return void(this._duplicateVidCache=void 0);const i=t.version,n=new Uint32Array(t.categories.length).fill(0),o=t.getRawData().subarray(0,t.length);o.forEach(e=>n[e]++),this._duplicateVidCache={colVersion:i,valueCounts:n,indexes:o}}get duplicateVidCache(){var e;const t=null===(e=this.dataFrame)||void 0===e?void 0:e.col(f);if(t)return this._duplicateVidCache&&t.version===this._duplicateVidCache.colVersion||this.cacheDuplicateVIDs(),this._duplicateVidCache}performSingleCellCalculations(e,t){return yt(this,void 0,void 0,function*(){const i=this.template.compute;if(!t||""===t)return;const n=yield Je([t],i.descriptors.args,i.functions,i.scripts,i.queries);for(const t of n.columns.toList())t.name!==h&&(this.dataFrame.columns.contains(t.name)||(this.dataFrame.columns.addNew(t.name,t.type).semType=t.semType),this.dataFrame.col(t.name).set(e,t.get(0),!1));this.dataFrame.fireValuesChanged(),this.saveCampaign(!1)})}initDesignViewRibbons(i,n,a=!1){var r,s,l;const d=e.events.onViewRemoved.subscribe(e=>{e.id===(null==i?void 0:i.id)&&(n.forEach(e=>e.unsubscribe()),d.unsubscribe())});let c=null==i?void 0:i.getRibbonPanels();if(c&&!oe(c)){setTimeout(()=>{const{sub:t}=ie(i,this.appName,i.name,()=>{e.shell.v=this.mainView,null==i||i.close(),this._infoView.init(),t.unsubscribe()})},1e3);const n=()=>yt(this,void 0,void 0,function*(){var e;Te(this,e=>yt(this,void 0,void 0,function*(){var n,o,a,r,s,l,d,c,u,p;const m=this.template.compute.descriptors.args,h=this.template.compute.functions,v=null!==(n=this.template.compute.scripts)&&void 0!==n?n:[],f=null!==(o=this.template.compute.queries)&&void 0!==o?o:[],g=e.descriptors,b={descriptors:{enabled:!!(null===(a=null==e?void 0:e.descriptors)||void 0===a?void 0:a.length),args:null!==(r=null==e?void 0:e.descriptors)&&void 0!==r?r:[]},functions:Object.entries(null!==(s=null==e?void 0:e.externals)&&void 0!==s?s:{}).map(([e,t])=>{const i=e.split(":");return{name:i[1],package:i[0],args:t}}),scripts:Object.entries(null!==(l=null==e?void 0:e.scripts)&&void 0!==l?l:{}).filter(([e,t])=>e.startsWith(y)&&3===e.split(":").length).map(([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}}),queries:Object.entries(null!==(d=null==e?void 0:e.queries)&&void 0!==d?d:{}).filter(([e,t])=>e.startsWith(w)&&3===e.split(":").length).map(([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}})};this.template.compute=b,this.campaign.template=this.template;const C=g.filter(e=>!m.includes(e)),A={};Object.entries(null!==(c=null==e?void 0:e.externals)&&void 0!==c?c:{}).filter(([e,t])=>{const i=h.find(t=>`${t.package}:${t.name}`===e);return!i||!Object.entries(t).every(([e,t])=>i.args[e]===t)}).forEach(([e,t])=>{A[e]=t});const T={};Object.entries(null!==(u=null==e?void 0:e.scripts)&&void 0!==u?u:{}).filter(([e,t])=>{const i=v.find(t=>`${y}:${t.name}:${t.id}`===e);return!i||!Object.entries(t).every(([e,t])=>i.args[e]===t)}).forEach(([e,t])=>{T[e]=t});const S={};Object.entries(null!==(p=null==e?void 0:e.queries)&&void 0!==p?p:{}).filter(([e,t])=>{const i=f.find(t=>`${w}:${t.name}:${t.id}`===e);return!i||!Object.entries(t).every(([e,t])=>i.args[e]===t)}).forEach(([e,t])=>{S[e]=t}),t.setUpdateIndicator(i.grid.root,!0);try{yield ze({descriptors:C,externals:A,scripts:T,queries:S},this.dataFrame,this.molColName),this.dataFrame.fireValuesChanged()}finally{t.setUpdateIndicator(i.grid.root,!1),this.saveCampaign(!1)}}),()=>null,null===(e=this.campaign)||void 0===e?void 0:e.template,!0)}),d=t.iconFA("wrench",n,"Calculate additional properties"),u=t.icons.add(()=>{var e;null===(e=this.dataFrame)||void 0===e||e.rows.addNew(null,!0)},"Add new row"),p=t.iconSvg("view-layout",()=>{this.applyTemplateLayout(i)},"Apply template layout "+((null===(r=this.template)||void 0===r?void 0:r.localLayoutPath)?"(Loaded from mounted file storage)":"(Static)"));this._refreshCampaignIcon=t.icons.sync(()=>yt(this,void 0,void 0,function*(){this.refreshCampaign()})),t.tooltip.bind(this._refreshCampaignIcon,()=>this._refreshIconTooltip);const m=t.iconFA("share",()=>yt(this,void 0,void 0,function*(){var e;yield new Me(null===(e=this.campaign)||void 0===e?void 0:e.permissions).show(e=>{this.campaign.permissions=e,this.saveCampaign(!0)})}),"Edit campaign permissions"),h=t.bigButton("Progress tracker",()=>{st(this,()=>{var e;return null!==(e=this._designView)&&void 0!==e?e:null})}),v=t.bigButton("Submit...",()=>{var e;null===(e=this._submitView)||void 0===e||e.render()}),f=o.Func.find({meta:{role:"HitDesignerFunction"}}).filter(e=>1===e.outputs.length&&e.outputs[0].propertyType===o.TYPE.DATA_FRAME);v.classList.add("hit-design-submit-button");const g=[v];if(this.stages.length>0&&g.unshift(h),this.campaign&&this.template&&!this.campaign.template&&(this.campaign.template=this.template),((null===(s=this.template)||void 0===s?void 0:s.layoutViewState)||(null===(l=this.template)||void 0===l?void 0:l.localLayoutPath))&&g.unshift(p),this.hasEditPermission&&g.unshift(m),f.length>0&&a){const i=f[0],n=t.iconFA("pen-nib",()=>yt(this,void 0,void 0,function*(){var n;const a={};if(i.inputs.length>0&&this.dataFrame&&this.dataFrame.currentRowIdx>=0&&i.inputs[0].semType===o.SEMTYPE.MOLECULE){const e=Gt.convertToSmiles(null===(n=this.dataFrame.col(this.molColName))||void 0===n?void 0:n.get(this.dataFrame.currentRowIdx));e&&(a[i.inputs[0].name]=e)}const r=i.prepare(a),s=yield r.getEditor();t.dialog(i.friendlyName).add(s).onOK(()=>yt(this,void 0,void 0,function*(){const t=o.TaskBarProgressIndicator.create(`Running ${i.friendlyName}`);try{yield r.call();const n=r.getOutputParamValue();if(!n||!n.rowCount)return e.shell.warning(`${i.friendlyName} returned an empty result`),void t.close();yield n.meta.detectSemanticTypes(),yield e.data.detectSemanticTypes(n),yield this.handleJoiningDataframe(n)}catch(t){e.shell.error(`Failed to run ${i.friendlyName}`),Gt.logger.error(t)}finally{t.close()}})).show()}),i.description?i.description:i.friendlyName);g.unshift(n)}g.unshift(d),g.unshift(u),g.unshift(this._refreshCampaignIcon),c.push(g),c.some(e=>{var t;const i=null!==(t=null==e?void 0:e.findIndex(e=>{var t;return"save"===(null===(t=null==e?void 0:e.textContent)||void 0===t?void 0:t.toLowerCase())}))&&void 0!==t?t:-1;return-1!==i&&(e.splice(i,1),!0)}),c=c.filter(e=>{var t;return(null!==(t=null==e?void 0:e.length)&&void 0!==t?t:0)>0}),i.setRibbonPanels(c)}return i}applyTemplateLayout(t){return yt(this,void 0,void 0,function*(){var i,n;if(t){if(null===(i=this.template)||void 0===i?void 0:i.localLayoutPath)try{const i=yield e.dapi.files.readAsText(this.template.localLayoutPath),n=o.ViewLayout.fromJson(i);return void t.loadLayout(n)}catch(t){e.shell.error("Failed to apply layout from mounted file storage. Falling back to static layout"),Gt.logger.error(t)}if(null===(n=this.template)||void 0===n?void 0:n.layoutViewState)try{const e=o.ViewLayout.fromViewState(this.template.layoutViewState);t.loadLayout(e)}catch(t){e.shell.error("Failed to apply template layout. Check console for more details."),Gt.logger.error(t)}else e.shell.error("No layout found")}else e.shell.error("No view found")})}getDesignView(){var t,i,n,a,r,s,l;this._designView&&this._designView.close();const d=[],c=null===(t=this.dataFrame.col(this.molColName))||void 0===t?void 0:t.toList().every(e=>!e&&""===e),u=e.shell.addTableView(this.dataFrame);this._designViewName=null!==(r=null!==(n=null===(i=this.campaign)||void 0===i?void 0:i.friendlyName)&&void 0!==n?n:null===(a=this.campaign)||void 0===a?void 0:a.name)&&void 0!==r?r:this._designViewName,u.name=this._designViewName,u._onAdded();const p=null===(s=this._campaign)||void 0===s?void 0:s.layout;if(p)try{const e=o.ViewLayout.fromViewState(p);u.loadLayout(e)}catch(t){e.shell.error("Failed to apply layout. Falling back to default layout."),console.error(t)}this.checkGrid(u),c&&e.functions.call("Chem:editMoleculeCell",{cell:u.grid.cell(this._molColName,0)}),this.initGridSubs(u,d);const h=null===(l=u.grid)||void 0===l?void 0:l.col(f);h&&(h.editable=!1);const v=this.dataFrame.col(f);return v&&(v.semType=g,v.valueComparer=(e,t)=>e===t?0:null===e?-1:null===t?1:parseInt(e.substring(1))-parseInt(t.substring(1))),d.push(this.dataFrame.onRowsAdded.pipe((0,lt.filter)(()=>!this.isJoining)).subscribe(()=>{var t;try{if(this.stages.length>0)for(let e=0;e<this.dataFrame.rowCount;e++){const i=this.dataFrame.col(m).get(e);i&&""!==i&&!(null===(t=this.dataFrame.col(m))||void 0===t?void 0:t.isNone(e))||this.dataFrame.set(m,e,this.stages[0])}let i=null;for(let e=0;e<this.dataFrame.rowCount;e++){const t=u.grid.cell(this.molColName,e);t&&(""!==t.cell.value&&null!==t.cell.value||(i=t))}i&&e.functions.call("Chem:editMoleculeCell",{cell:i})}catch(e){console.error(e)}})),d.push(e.events.onContextMenu.subscribe(t=>{var i,n,a,r,s,l,d,c,p,m,h,v;try{const e=null===(i=null==t?void 0:t.args)||void 0===i?void 0:i.context;if(!e)return;if((null==e?void 0:e.type)!==o.VIEWER.GRID)return;if(!e.tableView||e.tableView.id!==u.id)return;if((null===(r=null===(a=null===(n=null==t?void 0:t.args)||void 0===n?void 0:n.item)||void 0===a?void 0:a.tableColumn)||void 0===r?void 0:r.name)!==this.molColName||!(null===(l=null===(s=null==t?void 0:t.args)||void 0===s?void 0:s.item)||void 0===l?void 0:l.isTableCell))return;const f=null===(d=null==t?void 0:t.args)||void 0===d?void 0:d.menu;if(!f)return;f.item("Add new row",()=>{this.dataFrame.rows.addNew(null,!0)}),f.item("Duplicate molecule",()=>{var e,i,n,o;try{const a=this.dataFrame.rows.addNew(null,!0);null!=a.get(this.molColName)&&a.idx>-1&&(this.dataFrame.cell(a.idx,this.molColName).value=null!==(o=null===(n=null===(i=null===(e=null==t?void 0:t.args)||void 0===e?void 0:e.item)||void 0===i?void 0:i.cell)||void 0===n?void 0:n.value)&&void 0!==o?o:"")}catch(e){console.error(e)}});const g=null===(p=null===(c=null==t?void 0:t.args)||void 0===c?void 0:c.item)||void 0===p?void 0:p.tableRowIndex,y=null===(v=null===(h=null===(m=null==t?void 0:t.args)||void 0===m?void 0:m.item)||void 0===h?void 0:h.cell)||void 0===v?void 0:v.value;y&&(null!=g?g:-1)>-1&&f.item("Re-Run Calculations",()=>yt(this,void 0,void 0,function*(){try{yield this.performSingleCellCalculations(g,y)}catch(e){console.error(e)}}))}catch(t){e.log.error(t)}})),d.push(e.events.onViewLayoutApplied.subscribe(e=>{e&&e.view===u&&this.initGridSubs(u,d)})),this.initDesignViewRibbons(u,d,!0),u.parentCall=this.parentCall,u}checkGrid(t){t.grid||(e.shell.error("Applied layout created view without grid. Resetting layout."),t.resetLayout())}initGridSubs(t,i){this._gridSubs&&this._gridSubs.grid===t.grid||(this._gridSubs&&this._gridSubs.subs.forEach(e=>e.unsubscribe()),this.checkGrid(t),t.grid?(this._gridSubs={grid:t.grid,subs:[]},(null==t?void 0:t.grid)&&this._gridSubs.subs.push(t.grid.onCellValueEdited.subscribe(t=>yt(this,void 0,void 0,function*(){var i,n;try{if((null===(i=t.tableColumn)||void 0===i?void 0:i.name)===m)return void(yield this.saveCampaign(!1));if((null===(n=t.tableColumn)||void 0===n?void 0:n.name)!==this.molColName)return;const e=t.cell.value,o=t.tableRowIndex;if(e)try{const t=yield ft(e,this._campaignId,this.appName);this.dataFrame.col(f).set(o,t,!0)}catch(e){console.error("Failed to register molecule")}yield this.performSingleCellCalculations(o,e)}catch(t){e.shell.error("Failed to process molecule edit, check console for details"),console.error(t)}}))),(null==t?void 0:t.grid)&&this._gridSubs.subs.push(t.grid.onCellRender.subscribe(e=>{var t;try{const i=e.cell,n=this.duplicateVidCache;if(!i||!i.isTableCell||!i.tableColumn||!n||i.tableColumn.name!==f||(null!==(t=i.tableRowIndex)&&void 0!==t?t:-1)<0)return;n.valueCounts[n.indexes[i.tableRowIndex]]>1&&(e.cell.style.backColor=o.Color.setAlpha(o.Color.getCategoricalColor(n.indexes[i.tableRowIndex]),150))}catch(e){}})),this._gridSubs.subs.forEach(e=>i.push(e))):e.shell.error("No grid found, cannot initialize grid subscriptions"))}getSummary(){var i,n,a,r,l,d,c,u,p,m,h,v,f;const g=()=>{var e,t;const i=this._filePath.indexOf(null!==(e=this.campaignId)&&void 0!==e?e:null===(t=this._campaign)||void 0===t?void 0:t.name);return-1===i?this._filePath:this._filePath.substring(0,i-1)},y=Object.assign({},null!==(n=null===(i=this.campaign)||void 0===i?void 0:i.campaignFields)&&void 0!==n?n:this.campaignProps);this.template&&this.template.campaignFields&&Object.entries(y).forEach(([t,i])=>{const n=this.template.campaignFields.find(e=>e.name===t);n&&"Date"===n.type&&i?"Invalid Date"!==new Date(i).toString()?y[t]=new Date(i).toLocaleDateString():i.date?y[t]=new Date(i.date).toLocaleDateString():y[t]=i:n&&n.type===o.SEMTYPE.MOLECULE&&i&&(y[t]=e.chem.drawMolecule(i))});const w=null!==(d=null!==(r=null===(a=this.campaign)||void 0===a?void 0:a.friendlyName)&&void 0!==r?r:null===(l=this.campaign)||void 0===l?void 0:l.name)&&void 0!==d?d:this.campaignId,b=function(i,n){var o;const a=t.icons.edit(()=>{var o,s,l,d,c;let u=null!==(s=null!==(o=null==n?void 0:n.tooltip)&&void 0!==o?o:i.textContent)&&void 0!==s?s:"";const p=null!==(l=null==n?void 0:n.beforeEditTextContent)&&void 0!==l?l:e=>e,m=null!==(d=null==n?void 0:n.afterEditTextContent)&&void 0!==d?d:e=>e,h=t.input.string("smth",{value:p(null!==(c=i.textContent)&&void 0!==c?c:""),onValueChanged:()=>X(this,void 0,void 0,function*(){var e;const t=yield f();setTimeout(()=>{var e,o;if(t)return h.input.classList.add("d4-invalid"),void(u=t);h.input.classList.remove("d4-invalid"),u=null!==(o=null!==(e=null==n?void 0:n.tooltip)&&void 0!==e?e:i.textContent)&&void 0!==o?o:""},100),null===(e=null==n?void 0:n.onChange)||void 0===e||e.call(n,h.value)})});t.tooltip.bind(h.input,()=>u);const v=h.root.getElementsByTagName("label").item(0);v&&v.remove(),h.root.style.width="100%";const f=()=>X(this,void 0,void 0,function*(){var e;const t=(null===(e=h.value)||void 0===e?void 0:e.trim())||(null==n?void 0:n.nullable)?null:"Field cannot be empty";return null!=t?t:(null==n?void 0:n.validator)?yield n.validator(h.value):null}),g=t.button("Save",()=>X(this,void 0,void 0,function*(){var o,s;const l=yield f();l?e.shell.error(l):(yield null===(o=null==n?void 0:n.onOk)||void 0===o?void 0:o.call(n,h.value),i.textContent=null!==(s=m(h.value))&&void 0!==s?s:"",t.empty(r),r.appendChild(i),r.appendChild(a))})),y=t.button("Cancel",()=>{var e;t.empty(r),r.appendChild(i),r.appendChild(a),null===(e=null==n?void 0:n.onCancel)||void 0===e||e.call(n)});t.empty(r),h.addOptions(y),h.addOptions(g),r.appendChild(h.root),h.input.focus()},null!==(o=null==n?void 0:n.tooltip)&&void 0!==o?o:"Edit"),r=t.divH([i,a],{style:{display:"flex",alignItems:"center"}});return a.style.marginLeft="5px",r}(t.divText(w),{tooltip:"Edit Campaign Name",nullable:!1,onOk:e=>yt(this,void 0,void 0,function*(){this.campaign.friendlyName=e,yield this.saveCampaign(!0)}),validator:e=>yt(this,void 0,void 0,function*(){return(null==e?void 0:e.trim())?null:"Campaign name can not be empty"})});return Object.assign(Object.assign(Object.assign(Object.assign(Object.assign({Name:b,Code:null!==(c=this.campaignId)&&void 0!==c?c:null===(u=this._campaign)||void 0===u?void 0:u.name,Template:null!==(m=null===(p=this.template)||void 0===p?void 0:p.name)&&void 0!==m?m:"Molecules","File Path":(()=>{const i=t.icons.edit(()=>{const n=g(),r=t.input.string("Path",{value:n}),l=r.root.getElementsByTagName("label").item(0);l&&l.remove(),r.root.style.width="100%";const d=t.button("Save",()=>yt(this,void 0,void 0,function*(){if(!(yield function(t){return X(this,void 0,void 0,function*(){return t&&""!==t.trim()?!!(yield e.dapi.files.exists(t))||(e.shell.error("Given folder does not exist"),!1):(e.shell.error("Path can not be empty"),!1)})}(r.value)))return;const n=r.value;n.endsWith("/")?this._filePath=`${n}${this.campaignId}/${s}`:this._filePath=`${n}/${this.campaignId}/${s}`,this._campaign&&(this._campaign.savePath=this._filePath),yield this.saveCampaign(!0),t.empty(a);const l=g();o=t.link(l,()=>{var e,t,i;return this.download(this.dataFrame,null!==(i=null!==(e=this.campaignId)&&void 0!==e?e:null===(t=this._campaign)||void 0===t?void 0:t.name)&&void 0!==i?i:"Molecules")},x),a.appendChild(o),a.appendChild(i)})),c=t.button("Cancel",()=>{t.empty(a),a.appendChild(o),a.appendChild(i)});t.empty(a),r.addOptions(c),r.addOptions(d),a.appendChild(r.root),r.input.focus()},"Edit file path");i.style.marginLeft="5px";const n=g();let o=t.link(n,()=>{var e,t,i;return this.download(this.dataFrame,null!==(i=null!==(e=this.campaignId)&&void 0!==e?e:null===(t=this._campaign)||void 0===t?void 0:t.name)&&void 0!==i?i:"Molecules")},x);const a=t.divH([o,i],{style:{alignItems:"center"}});return a})()},(null===(h=this.campaign)||void 0===h?void 0:h.authorUserFriendlyName)?{Author:this.campaign.authorUserFriendlyName}:{}),(null===(v=this.campaign)||void 0===v?void 0:v.lastModifiedUserName)?{"Last Modified By":this.campaign.lastModifiedUserName}:{}),(null===(f=this.campaign)||void 0===f?void 0:f.createDate)?{"Create Date":this.campaign.createDate}:{}),y),{"Number of Molecules":this.dataFrame.rowCount.toString(),"Enrichment Methods":[this.template.compute.descriptors.enabled?"descriptors":"",...this.template.compute.functions.map(e=>e.name)].filter(e=>e&&""!==e.trim()).join(", ")})}saveCampaign(){return yt(this,arguments,void 0,function*(i=!0,n=!1,a){var r,s,d,c,u,p,m,h,v,f,g,y,w,b,C,A,T,S,x,I,N,E,F,_,P;this._isSaving=!0;const L=this.campaignId,O=setTimeout(()=>{var e;(null===(e=this._designView)||void 0===e?void 0:e.grid)&&t.setUpdateIndicator(this._designView.grid.root,!0,"Someone else is saving the campaign. Please wait...")},500);try{const e=yield this.aquireAndWaitCampaignLock(L);if(!(null==e?void 0:e.aquired))throw new Error("Could not acquire lock for campaign during 30 seconds")}catch(i){return clearTimeout(O),(null===(r=this._designView)||void 0===r?void 0:r.grid)&&t.setUpdateIndicator(this._designView.grid.root,!1),e.shell.error("Failed to acquire campaign lock. Someone else might be editing the campaign. Please try again later."),this._isSaving=!1,this.campaign}clearTimeout(O),(null===(s=this._designView)||void 0===s?void 0:s.grid)&&t.setUpdateIndicator(this._designView.grid.root,!0,"Saving Campaign...");const V=this.template.name,k=this.dataFrame,B=L,M={};k.columns.toList().forEach(e=>M[e.name]=e.semType);const D={};k.columns.toList().forEach(e=>D[e.name]=e.type);const R=null!==(c=null===(d=this.campaign)||void 0===d?void 0:d.tilesViewerFormSketch)&&void 0!==c?c:void 0,j=null!==(p=null===(u=this.campaign)||void 0===u?void 0:u.authorUserId)&&void 0!==p?p:e.shell.user.id,U=null!==(h=null===(m=this.campaign)||void 0===m?void 0:m.permissions)&&void 0!==h?h:yield(()=>yt(this,void 0,void 0,function*(){try{const e=yield function(){return dt(this,void 0,void 0,function*(){var e,t,i,n,o;try{const a=null!==(e=Gt.settings)&&void 0!==e?e:yield Gt.getSettings(),r={view:[],edit:[]};return a?(a instanceof Map?(r.view=yield pt(null!==(t=a.get("view"))&&void 0!==t?t:""),r.edit=yield pt(null!==(i=a.get("edit"))&&void 0!==i?i:"")):(r.view=yield pt(null!==(n=a.view)&&void 0!==n?n:""),r.edit=yield pt(null!==(o=a.edit)&&void 0!==o?o:"")),r):r}catch(e){return console.error(e),{view:[],edit:[]}}})}(),t={view:e.view.map(e=>e.id),edit:e.edit.map(e=>e.id)};return 0===t.edit.length&&(t.edit=[Be.edit[0]]),0===t.view.length&&(t.view=[Be.view[0]]),t}catch(t){e.shell.error("Failed to get default permissions"),console.error(t)}return Be}))(),$=j?null!==(f=null===(v=this.campaign)||void 0===v?void 0:v.authorUserFriendlyName)&&void 0!==f?f:null===(g=yield e.dapi.users.find(j))||void 0===g?void 0:g.friendlyName:void 0,H={name:B,friendlyName:null!==(b=null!==(w=null===(y=this.campaign)||void 0===y?void 0:y.friendlyName)&&void 0!==w?w:null==a?void 0:a.friendlyName)&&void 0!==b?b:B,templateName:V,status:null!==(A=null===(C=this.campaign)||void 0===C?void 0:C.status)&&void 0!==A?A:"In Progress",createDate:null!==(S=null===(T=this.campaign)||void 0===T?void 0:T.createDate)&&void 0!==S?S:ee(new Date),campaignFields:null!==(I=null===(x=this.campaign)||void 0===x?void 0:x.campaignFields)&&void 0!==I?I:this.campaignProps,columnSemTypes:M,rowCount:k.rowCount,filteredRowCount:k.filter.trueCount,savePath:this._filePath,columnTypes:D,tilesViewerFormSketch:R,version:this.version+1,authorUserId:j,authorUserFriendlyName:$,lastModifiedUserName:e.shell.user.friendlyName,permissions:U};if(!this.hasEditPermission)return e.shell.error("You do not have permission to modify this campaign"),(null===(N=this._designView)||void 0===N?void 0:N.grid)&&t.setUpdateIndicator(this._designView.grid.root,!1),yield this.releaseCampaignLock(L),this._isSaving=!1,H;const q=`${this.appName}/campaigns/${L}/${l}`;let G=k;if(yield Gt.files.exists(q)){const t=JSON.parse(yield Gt.files.readAsText(q));if((null!==(E=t.version)&&void 0!==E?E:0)>this.version&&(H.version=Math.max(this.version,null!==(F=t.version)&&void 0!==F?F:0)+1,yield e.dapi.files.exists(this._filePath)))try{const t=yield e.dapi.files.readCsv(this._filePath);G=this.unionDataframes(t,k,this.molColName,this.molColName)}catch(e){console.error(e)}}const Y=o.DataFrame.fromColumns(G.columns.toList().filter(e=>!e.name.startsWith("~"))).toCsv();yield e.dapi.files.writeAsText(this._filePath,Y);const W=this._designView.saveLayout();W?H.layout=W.viewState:e.shell.warning("Layout cound not be saved"),H.template=this.template,yield Gt.saveCampaignJson(this.appName,H),i&&e.shell.info("Campaign saved successfully."),!i&&n&&e.shell.info("Campaign created successfully."),this.campaign=H,this.designViewName=null!==(_=H.friendlyName)&&void 0!==_?_:H.name;const J=yield this.releaseCampaignLock(L);return this._lastExpiresTimeString=J,(null===(P=this._designView)||void 0===P?void 0:P.grid)&&t.setUpdateIndicator(this._designView.grid.root,!1),this._isSaving=!1,this._refreshIconTooltip="Refresh Campaign",H})}}class bt extends o.GridCellRenderer{get name(){return"customGasteigerPNG"}get cellType(){return"customGasteigerPNG"}get defaultHeight(){return 200}get defaultWidth(){return 200}render(e,t,i,n,o,a,r){if(a.gridRow<0||!a.cell.value)return;const s=a.cell.value,l=new Image(n-2,o-2);l.src="data:image/png;base64,"+s,l.onload=function(){e.drawImage(l,t+2,i+2,n-2,o-2)}}}var Ct=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function r(e){try{l(n.next(e))}catch(e){a(e)}}function s(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(r,s)}l((n=n.apply(e,t||[])).next())})};class At extends nt{constructor(t){super(t),this.name="PeptiHit",e.shell.windows.showHelp=!0,e.shell.windows.help.showHelp(Gt.webRoot+"README_HD.md")}getNewCampaignAccordeon(e){return Ct(this,void 0,void 0,function*(){const{root:t,promise:i,cancelPromise:n}=Ze(e,!0);return i.then(t=>Ct(this,void 0,void 0,function*(){this.app.dataFrame=t.df,yield this.app.setTemplate(e),this.app.campaignProps=t.campaignProps,yield this.app.saveCampaign(!1),e.layoutViewState&&this.app.campaign&&(this.app.campaign.layout=e.layoutViewState)})),n.then(()=>{this.init()}),t})}getAppHeader(){return Ve.appHeader({iconPath:Gt.webRoot+"/images/icons/pepti-hit-icon.png",learnMoreUrl:"https://github.com/datagrok-ai/public/blob/master/packages/HitTriage/README_HD.md",description:"-  Configure your own workflow using the template editor\n-  Sketch Helm sequences in the spreadsheet\n-  Annotate and share ideas with the team\n-  Convert to molecular form and calculate different properties\n-  Save campaigns and continue from where you left off\n-  Submit final selection to the function of your choice"})}}var Tt=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function r(e){try{l(n.next(e))}catch(e){a(e)}}function s(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(r,s)}l((n=n.apply(e,t||[])).next())})};class St extends wt{constructor(e){super(e,"PeptiHit",e=>new At(e)),this._helmColName=v}setTemplate(e,t){const i=Object.create(null,{setTemplate:{get:()=>super.setTemplate}});return Tt(this,void 0,void 0,function*(){var n,a;yield i.setTemplate.call(this,e,t),this._helmColName=null!==(a=null===(n=this.dataFrame.columns.bySemType(o.SEMTYPE.MACROMOLECULE))||void 0===n?void 0:n.name)&&void 0!==a?a:v})}get helmColName(){var e,t;return null!==(e=this._helmColName)&&void 0!==e?e:null===(t=this.dataFrame.columns.bySemType(o.SEMTYPE.MACROMOLECULE))||void 0===t?void 0:t.name}performSingleCellCalculations(t,i){const n=Object.create(null,{performSingleCellCalculations:{get:()=>super.performSingleCellCalculations}});return Tt(this,void 0,void 0,function*(){var a;try{if(!i)throw new Error("No cell value provided");const r=o.Column.fromStrings(this.helmColName,[i]),s=o.DataFrame.fromColumns([r]);r.semType=o.SEMTYPE.MACROMOLECULE,r.setTag("units","helm"),r.setTag(".alphabetIsMultichar","true"),yield e.functions.call("Bio:toAtomicLevel",{table:s,seqCol:r,nonlinear:!0});const l=s.columns.names().find(e=>e.toLowerCase()!==this.helmColName.toLowerCase()),d=l?null===(a=s.col(l))||void 0===a?void 0:a.get(0):null;if(!d)throw new Error("Failed to convert sequence to atomic level");this.dataFrame.set(this.molColName,t,d),yield n.performSingleCellCalculations.call(this,t,d)}catch(e){console.error(e)}})}getDesignView(){var t,i,n,a,r,s,l;const d=[],c=null===(t=this.dataFrame.col(this.helmColName))||void 0===t?void 0:t.toList().every(e=>!e&&""===e),u=this.dataFrame.col(this.helmColName);if(!u)throw new Error("No helm column found");u.semType=o.SEMTYPE.MACROMOLECULE,u.setTag("units","helm"),u.setTag(".alphabetIsMultichar","true"),u.setTag("cell.renderer","helm");const p=e.shell.addTableView(this.dataFrame);this._designViewName=null!==(n=null===(i=this.campaign)||void 0===i?void 0:i.name)&&void 0!==n?n:this._designViewName,p.name=this._designViewName,p._onAdded();const h=null!==(r=null===(a=this._campaign)||void 0===a?void 0:a.layout)&&void 0!==r?r:null===(s=this.template)||void 0===s?void 0:s.layoutViewState;if(h)try{const e=o.ViewLayout.fromViewState(h);p.loadLayout(e)}catch(t){e.shell.error("Failed to apply layout. Falling back to default layout."),console.error(t)}const v=null===(l=p.grid)||void 0===l?void 0:l.col(f);v&&(v.editable=!1);const y=this.dataFrame.col(f);return y&&(y.semType=g,y.valueComparer=(e,t)=>e===t?0:null===e?-1:null===t?1:parseInt(e.substring(1))-parseInt(t.substring(1))),c&&e.functions.call("Helm:editMoleculeCell",{cell:p.grid.cell(this.helmColName,0)}),d.push(this.dataFrame.onRowsAdded.pipe((0,lt.filter)(()=>!this.isJoining)).subscribe(()=>{var t;try{if(this.stages.length>0)for(let e=0;e<this.dataFrame.rowCount;e++){const i=this.dataFrame.col(m).get(e);i&&""!==i&&!(null===(t=this.dataFrame.col(m))||void 0===t?void 0:t.isNone(e))||this.dataFrame.set(m,e,this.stages[0])}let i=null;for(let e=0;e<this.dataFrame.rowCount;e++){const t=p.grid.cell(this.helmColName,e);t&&(""!==t.cell.value&&null!==t.cell.value||(i=t))}i&&e.functions.call("Helm:editMoleculeCell",{cell:i})}catch(e){console.error(e)}})),d.push(e.events.onContextMenu.subscribe(t=>{var i,n,a,r,s,l,d,c,u,m,h,v;try{const e=null===(i=null==t?void 0:t.args)||void 0===i?void 0:i.context;if(!e)return;if((null==e?void 0:e.type)!==o.VIEWER.GRID)return;if(!e.tableView||e.tableView.id!==p.id)return;if((null===(r=null===(a=null===(n=null==t?void 0:t.args)||void 0===n?void 0:n.item)||void 0===a?void 0:a.tableColumn)||void 0===r?void 0:r.name)!==this.helmColName||!(null===(l=null===(s=null==t?void 0:t.args)||void 0===s?void 0:s.item)||void 0===l?void 0:l.isTableCell))return;const f=null===(d=null==t?void 0:t.args)||void 0===d?void 0:d.menu;if(!f)return;f.item("Add new row",()=>{this.dataFrame.rows.addNew(null,!0)}),f.item("Duplicate Sequence",()=>{var e,i,n,o;try{const a=this.dataFrame.rows.addNew(null,!0);null!=a.get(this.helmColName)&&a.idx>-1&&(this.dataFrame.cell(a.idx,this.helmColName).value=null!==(o=null===(n=null===(i=null===(e=null==t?void 0:t.args)||void 0===e?void 0:e.item)||void 0===i?void 0:i.cell)||void 0===n?void 0:n.value)&&void 0!==o?o:"")}catch(e){console.error(e)}});const g=null===(u=null===(c=null==t?void 0:t.args)||void 0===c?void 0:c.item)||void 0===u?void 0:u.tableRowIndex,y=null===(v=null===(h=null===(m=null==t?void 0:t.args)||void 0===m?void 0:m.item)||void 0===h?void 0:h.cell)||void 0===v?void 0:v.value;y&&(null!=g?g:-1)>-1&&f.item("Re-Run Calculations",()=>Tt(this,void 0,void 0,function*(){try{yield this.performSingleCellCalculations(g,y)}catch(e){console.error(e)}}))}catch(t){e.log.error(t)}})),(null==p?void 0:p.grid)||(e.shell.error("Applied layout created view without grid. Resetting layout."),p.resetLayout()),(null==p?void 0:p.grid)&&d.push(p.grid.onCellValueEdited.subscribe(t=>Tt(this,void 0,void 0,function*(){var i,n;try{if((null===(i=t.tableColumn)||void 0===i?void 0:i.name)===m)return void(yield this.saveCampaign(!1));if((null===(n=t.tableColumn)||void 0===n?void 0:n.name)!==this.helmColName)return;const e=t.cell.value,o=t.tableRowIndex;yield this.performSingleCellCalculations(o,e);try{const e=this.dataFrame.col(this.molColName).get(o),t=yield ft(null!=e?e:"",this.campaignId,this.appName);t&&this.dataFrame.col(f).set(o,t,!0)}catch(e){console.error("Error updating V-iD column:",e)}}catch(t){e.shell.error("Error performing cell calculations: "+t),console.error(t)}}))),(null==p?void 0:p.grid)&&d.push(p.grid.onCellRender.subscribe(e=>{var t;try{const i=this.duplicateVidCache,n=e.cell;if(!n||!n.isTableCell||!n.tableColumn||!i||n.tableColumn.name!==f||(null!==(t=n.tableRowIndex)&&void 0!==t?t:-1)<0)return;i.valueCounts[i.indexes[n.tableRowIndex]]>1&&(e.cell.style.backColor=o.Color.setAlpha(o.Color.getCategoricalColor(i.indexes[n.tableRowIndex]),150))}catch(e){}})),this.initDesignViewRibbons(p,d),p.parentCall=this.parentCall,p}}var xt=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function r(e){try{l(n.next(e))}catch(e){a(e)}}function s(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(r,s)}l((n=n.apply(e,t||[])).next())})};function It(e){return xt(this,void 0,void 0,function*(){yield Wt.hitTriageAppTreeBrowser(e)})}function Nt(e){return xt(this,void 0,void 0,function*(){yield Wt.hitDesignAppTreeBrowser(e)})}function Et(e){return xt(this,void 0,void 0,function*(){yield Wt.peptiHitAppTreeBrowser(e)})}function Ft(){return xt(this,void 0,void 0,function*(){return yield Wt.hitTriageApp()})}function _t(){return xt(this,void 0,void 0,function*(){return yield Wt.hitDesignApp()})}function Pt(){return xt(this,void 0,void 0,function*(){return yield Wt.peptiHitApp()})}function Lt(){return xt(this,void 0,void 0,function*(){return yield Wt.demoFileIngest()})}function Ot(){return xt(this,void 0,void 0,function*(){return yield Wt.demoFileIngest1()})}function Vt(e){return xt(this,void 0,void 0,function*(){return yield Wt.demoFileIngest2(e)})}function kt(e,t){return xt(this,void 0,void 0,function*(){yield Wt.demoFileSubmit(e,t)})}function Bt(){return xt(this,void 0,void 0,function*(){yield Wt.registerMoleculesToViD()})}function Mt(e){return Wt.hitDesignVidPanel(e)}function Dt(){return Wt.gasteigerCellRenderer()}function Rt(e){return xt(this,void 0,void 0,function*(){return yield Wt.htPackageSettingEditor(e)})}var jt=function(e,t,i,n){var o,a=arguments.length,r=a<3?t:null===n?n=Object.getOwnPropertyDescriptor(t,i):n;if("object"==typeof Reflect&&"function"==typeof Reflect.decorate)r=Reflect.decorate(e,t,i,n);else for(var s=e.length-1;s>=0;s--)(o=e[s])&&(r=(a<3?o(r):a>3?o(t,i,r):o(t,i))||r);return a>3&&r&&Object.defineProperty(t,i,r),r},Ut=function(e,t){if("object"==typeof Reflect&&"function"==typeof Reflect.metadata)return Reflect.metadata(e,t)},$t=function(e,t){return function(i,n){t(i,n,e)}},Ht=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function r(e){try{l(n.next(e))}catch(e){a(e)}}function s(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(r,s)}l((n=n.apply(e,t||[])).next())})};class qt extends o.Package{constructor(){super(...arguments),this.molToSmilesLruCache=new o.LruCache(2e3),this.campaignsCache={}}convertToSmiles(t){return t?this.molToSmilesLruCache.getOrCreate(t,t=>e.chem.convert(t,e.chem.Notation.Unknown,e.chem.Notation.Smiles)):""}loadCampaigns(t,i){return Ht(this,void 0,void 0,function*(){return this.campaignsCache[t]||(this.campaignsCache[t]=yield function(t,i){return X(this,void 0,void 0,function*(){const n=(yield Gt.files.list(`${t}/campaigns`)).filter(e=>-1===i.indexOf(e.name)),o={},a=n.map(i=>X(this,void 0,void 0,function*(){try{const n=JSON.parse(yield Gt.files.readAsText(`${t}/campaigns/${i.name}/${l}`));if(n.authorUserId&&n.permissions&&!(yield le(n.authorUserId,n.permissions)))return null;if(n.authorUserId&&!n.authorUserFriendlyName){const t=yield e.dapi.users.find(n.authorUserId);t&&(n.authorUserFriendlyName=t.friendlyName)}o[n.name]=n}catch(e){console.error(e)}return null}));return yield Promise.all(a),o})}(t,null!=i?i:[])),this.campaignsCache[t]})}saveCampaignJson(e,t){return Ht(this,void 0,void 0,function*(){const i=`${e}/campaigns/${t.name}/${l}`;yield this.files.writeAsText(i,JSON.stringify(t)),this.campaignsCache[e][t.name]=t})}}const Gt=new qt;function Yt(i,n){return Ht(this,void 0,void 0,function*(){var a,r,s;const l=t.div([],{style:{width:"50px",height:"24px",position:"relative"}});l.innerHTML='<div class="grok-loader"><div></div><div></div><div></div><div></div></div>';const d=i.item(l),c=yield Gt.loadCampaigns(n,[]);let u=null,p=!0;for(const[t,n]of Object.entries(c)){const t=null!==(a=n.templateName)&&void 0!==a?a:null===(r=n.template)||void 0===r?void 0:r.name,l=t?i.getOrCreateGroup(t,null,p):i;p=!1;const d=l.item(null!==(s=n.friendlyName)&&void 0!==s?s:n.name);d.root.addEventListener("dblclick",e=>{e.stopImmediatePropagation(),e.stopPropagation(),e.preventDefault()}),o.debounce(d.onSelected,200).subscribe(t=>Ht(this,void 0,void 0,function*(){var t;try{const i="ingest"in n?n.ingest.query:n.savePath;if(!i||!(yield e.dapi.files.exists(i)))return void e.shell.error("File not found: "+i);const a=yield e.dapi.files.readCsv(i);if(!a)return;a.name=null!==(t=n.friendlyName)&&void 0!==t?t:n.name;const r=n.columnSemTypes;if(r)for(const[m,h]of Object.entries(r)){const f=a.columns.byName(m);f&&(f.semType=h,h===o.SEMTYPE.MACROMOLECULE&&m===v&&(f.setTag("units","helm"),f.setTag(".alphabetIsMultichar","true"),f.setTag("cell.renderer","helm")))}const s=document.activeElement;let l=!1;function d(){setTimeout(()=>{!l&&s&&document.activeElement!==s&&s&&"focus"in s&&s.focus()})}window.addEventListener("focusout",d);try{u&&u.close()}catch(g){}try{u=e.shell.addTableView(a);const y=n.layout;y&&u.loadLayout(o.ViewLayout.fromViewState(y))}catch(w){console.error(w)}function c(){window.removeEventListener("focusout",d)}function p(){c(),l=!0}window.addEventListener("click",p,{once:!0}),setTimeout(()=>{c(),window.removeEventListener("click",p)},5e3)}catch(b){console.error(b)}}))}d.remove()})}class Wt{static hitTriageAppTreeBrowser(e){return Ht(this,void 0,void 0,function*(){yield Yt(e,"Hit Triage")})}static hitDesignAppTreeBrowser(e){return Ht(this,void 0,void 0,function*(){yield Yt(e,"Hit Design")})}static peptiHitAppTreeBrowser(e){return Ht(this,void 0,void 0,function*(){yield Yt(e,"PeptiHit")})}static hitTriageApp(){return Ht(this,void 0,void 0,function*(){const t=e.functions.getCurrentCall();return new Qe(t).multiView})}static hitDesignApp(){return Ht(this,void 0,void 0,function*(){const t=e.functions.getCurrentCall();return new wt(t).multiView})}static peptiHitApp(){return Ht(this,void 0,void 0,function*(){const t=e.functions.getCurrentCall();return yield e.functions.call("Bio:initBio",{}),new St(t).multiView})}static demoFileIngest(){return Ht(this,void 0,void 0,function*(){const t=e.data.demo.molecules(100);return t.name="100 Molecules",t})}static demoFileIngest1(){return Ht(this,void 0,void 0,function*(){const t=e.data.demo.molecules(5e3);return t.name="5000 Molecules",t})}static demoFileIngest2(t){return Ht(this,void 0,void 0,function*(){const i=e.data.demo.molecules(t);return i.name="Variable Molecules number",i})}static demoFileSubmit(t,i){return Ht(this,void 0,void 0,function*(){e.shell.info(t.rowCount),e.shell.info(i)})}static registerMoleculesToViD(){return Ht(this,void 0,void 0,function*(){!function(){mt(this,void 0,void 0,function*(){var i;const n="Hit Design",a=yield Gt.loadCampaigns(n),r=Object.keys(a),l=t.input.choice("Select Campaign",{value:null,nullable:!0,items:r,tooltipText:"Select campaign to register its molecules. Leave empty to register all campaigns"}),d=yield new Promise(e=>mt(this,void 0,void 0,function*(){t.dialog("Register Existing Campaign Molecules").add(t.divText("This operation will go through all molecules in the selected campaign(s) and register them into V-iD storage.\n This operation is irreversible.")).add(t.divText("You can select a specific campaign or leave it empty to process all campaigns.")).add(t.divText("After this opteration, all VIDs throughout all campaigns will become unique, and old V-iDs will no longer be valid.")).add(t.divText("WARNING: Depending on the number of molecules, this operation can take a long time.")).add(l).onOK(()=>{if(l.value){const t=a[l.value];e([t])}else{const t=r.map(e=>a[e]);e(t)}}).onCancel(()=>e(null)).show()})),c=o.TaskBarProgressIndicator.create("Registering molecules...");if(!d||0===d.length)return void c.close();const u=d.length;for(const t of d){c.update(0/u*100,`Processing campaign: ${t.name}`);try{const o=`System.AppData/HitTriage/${n}/campaigns`,a=null!==(i=null==t?void 0:t.savePath)&&void 0!==i?i:`${o}/${t.name}/${s}`,r=yield e.dapi.files.readCsv(a);if(!r){e.shell.warning(`Failed to load campaign table for campaign ${t.name} at path ${a}`),console.warn(`Failed to load campaign table for campaign ${t.name} at path ${a}`);continue}const l=r.col(h);if(!l){e.shell.warning(`Molecule column not found in campaign ${t.name} table`),console.warn(`Molecule column not found in campaign ${t.name} table`);continue}const d=r.col(f);if(!d){e.shell.warning(`V-iD column not found in campaign ${t.name} table`),console.warn(`V-iD column not found in campaign ${t.name} table`);continue}const c=l.toList(),u=yield gt(c,t.name,n);for(let e=0;e<r.rowCount;e++){const t=c[e];if(!t||""===t){d.set(e,"",!1);continue}const i=u.get(t);i&&d.set(e,i,!1)}d.fireValuesChanged(),yield e.dapi.files.writeAsText(a,r.toCsv()),e.shell.info(`Finished processing campaign ${t.name}`),console.log(`Finished processing campaign ${t.name}`)}catch(i){e.shell.error(`Error processing campaign ${t.name}. See console for details.`),console.error(`Error processing campaign ${t.name} molecules registration:`,i)}}c.close()})}()})}static hitDesignVidPanel(i){return o.Widget.fromRoot(t.card(t.wait(()=>Ht(this,void 0,void 0,function*(){if(!(null==i?void 0:i.value))return t.divText("No V-iD provided");const n=yield Ue.getCampaignsByVid(i.value,null);if(!n||0===n.rowCount)return t.divText(`No campaigns found for V-iD: ${i.value}`);const o=yield Ue.getMoleculeByVid(i.value);if(!o||0===o.rowCount)return t.divText(`No molecule found for V-iD: ${i.value}`);const a=function(e){var t;const i=null===(t=Gt.meta)||void 0===t?void 0:t.sok;if(!i)throw new Error("Secret key for SMILES deobfuscation is not set");const n=atob(e);let o="";for(let e=0;e<n.length;e++){const t=n.charCodeAt(e),a=i.charCodeAt(e%i.length);o+=String.fromCharCode(t^a)}return o}(o.col("mh_string").get(0)),r=e.chem.drawMolecule(a,300,300),s=new Map;for(let e=0;e<n.rowCount;e++){const t=n.col("app_name").get(e),i=n.col("campaign_id").get(e),o=n.col("created_by").get(e);s.has(t)||s.set(t,[]),s.get(t).push({campaignId:i,createdBy:o})}const l=t.divV([r],{style:{gap:"10px",justifyContent:"center"}});for(const[e,i]of s.entries()){const n=t.table(i.map(e=>[e.campaignId,e.createdBy]),e=>[e[0],e[1]],["Campaigns","Created By"]),o=t.divV([t.h3(`${e} Campaigns`),n],{style:{gap:"4px"}});l.appendChild(o)}return l}))))}static gasteigerCellRenderer(){return new bt}static htPackageSettingEditor(i){return Ht(this,void 0,void 0,function*(){return function(i){return dt(this,void 0,void 0,function*(){var n;const a=i.filter(e=>"DefaultUserGroupsSharing"===e.category),r=[];for(const i of a){const n=`${i.name[0].toUpperCase()}${i.name.slice(1)}`,a=i.get(null),s=yield pt(a),l=t.input.userGroups(n);yield o.delay(200),l.value=s,l.onInput.subscribe(()=>{var t;try{const e=(null===(t=l.value)||void 0===t?void 0:t.length)?JSON.stringify(l.value.map(e=>e.id)):"";i.set(null,e)}catch(t){e.shell.error("Error Setting group. Check console for more details"),console.error(t)}}),l.setTooltip(`Selected groups will be granted ${n.toLowerCase()} permissions by default on newly created campaigns`),r.push(l)}const s=o.Widget.fromRoot(t.form(r,{style:{overflow:"visible"}}));s.root.prepend(t.h1("Default Campaign Sharing",{style:{marginBottom:"6px",marginTop:"6px"}}));const l=i.find(e=>e.name===ct);if(l){const i='Default storage for newly created campaigns. For each app, folders will be created under their name. 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mi.files.list(this.getTemplatesFolder())).filter(e=>e.name.endsWith(".json")).map(e=>e.name.slice(0,-5));o&&!s.includes(o.name)&&s.push(o.name);let r=null,l=!0;const c=()=>Ke(this,void 0,void 0,function*(){if(!l)return;const e=d.value,t=o&&o.name===e?o:yield Ne(this.getTemplatesFolder()+"/"+e+".json");r=t;const n=yield this.getNewCampaignAccordeon(t,i);_e()(i).empty(),i.className="ui-form",i.appendChild(n)}),d=t.input.choice("Template",{value:null!==(a=null==o?void 0:o.name)&&void 0!==a?a:s[0],items:s,onValueChanged:()=>Ke(this,void 0,void 0,function*(){yield c()})});d.root.style.width="100%";const u=t.icons.add(()=>Ke(this,void 0,void 0,function*(){t.setUpdateIndicator(this.root,!0),yield this.createNewTemplate(),t.setUpdateIndicator(this.root,!1)}),T),p=t.icons.copy(()=>{r&&this.createNewTemplate(r)},"Clone template"),m=t.icons.delete(()=>{!d.value||d.items.length<2||t.dialog("Delete template").add(t.divText(`Are you sure you want to delete template ${d.value}?`)).onOK(()=>Ke(this,void 0,void 0,function*(){try{const t=d.value;yield mi.files.delete(`${this.getTemplatesFolder()}/${t}.json`),l=!1,d.items=d.items.filter(e=>e!==t),d.value=d.items[0],l=!0,yield c(),e.shell.info("Template "+t+" was deleted successfully")}catch(t){l=!0,e.shell.error("Failed to delete template "+d.value),console.error(t)}})).show()},"Delete template");m.style.color="var(--blue-1)",u.style.color="#2083d5",d.addOptions(u),d.addOptions(p),d.addOptions(m),yield c(),_e()(n).empty(),n.appendChild(d.root)})}checkCampaign(e){return Ke(this,void 0,void 0,function*(){const t=location.search,i=new URLSearchParams(t);if(!i.has(u)&&!e)return;const n=null!=e?e:i.get(u);if(!(yield mi.files.exists(`${this.app.appName}/campaigns/${n}/${h}`)))return;const o=JSON.parse(yield mi.files.readAsText(`${this.app.appName}/campaigns/${n}/${h}`));if(o){if(o.authorUserId&&o.permissions&&!(yield me(o.authorUserId,o.permissions)))return void this.app.setBaseUrl();this.app.campaign=o}const a=yield Ne(`${this.getTemplatesFolder()}/${o.templateName}.json`);return this.app.setTemplate(a,o.filters,n,o.ingest),e&&re(u,e),o})}getCampaignsTable(){return Ke(this,void 0,void 0,function*(){const i=yield mi.loadCampaigns(this.app.appName,this.deletedCampaigns),n=null!==(a=he(D))&&void 0!==a?a:L.None;var a;const s=function(){const e=he(M);return e?JSON.parse(e):null}(),r=Object.values(i);s&&ge(r,s,R);const l=Te(r,n),c=be();this.currentGroupping=n;const d=i=>{var n,a;const s=t.icons.delete(()=>Ke(this,void 0,void 0,function*(){var e;t.dialog("Delete campaign").add(t.divText(`Are you sure you want to delete campaign ${null!==(e=i.friendlyName)&&void 0!==e?e:i.name}?`)).onOK(()=>Ke(this,void 0,void 0,function*(){yield this.deleteCampaign(this.app.appName,i.name),this.deletedCampaigns.push(i.name),yield this.init()})).show()}),"Delete campaign"),r=t.iconFA("share",()=>Ke(this,void 0,void 0,function*(){yield new Qe(i.permissions).show(t=>Ke(this,void 0,void 0,function*(){var n,o,a;try{i.permissions=t,null!==(n=i.authorUserId)&&void 0!==n||(i.authorUserId=e.shell.user.id),yield mi.saveCampaignJson(this.app.appName,i),e.shell.info("Permissions updated for campaign "+(null!==(o=i.friendlyName)&&void 0!==o?o:i.name))}catch(t){e.shell.error("Failed to update permissions for campaign "+(null!==(a=i.friendlyName)&&void 0!==a?a:i.name)),console.error(t)}}))}),"Manage campaign permissions");return s.style.display="none",r.style.display="none",pe(null!==(n=i.authorUserId)&&void 0!==n?n:o.User.current().id,null!==(a=i.permissions)&&void 0!==a?a:Je).then(e=>{e&&(s.style.display="inline-block",r.style.display="inline-block")}),s.style.color="var(--blue-1)",r.style.color="var(--blue-1)",[r,s]},u=Object.values(l).flat(),p=t.table(u,e=>{var i;return[t.link(null!==(i=e.friendlyName)&&void 0!==i?i:e.name,()=>this.setCampaign(e.name),"Continue Campaign",""),...c.map(t=>{var i,n,o,a;return t.startsWith("campaignFields.")?null!==(n=null===(i=e.campaignFields)||void 0===i?void 0:i[t.replace("campaignFields.","")])&&void 0!==n?n:"":null!==(a=null===(o=R[t])||void 0===o?void 0:o.call(R,e))&&void 0!==a?a:""}),...d(e)]},["Name",...c.map(e=>e.replace("campaignFields.","")),"",""]);return p.style.color="var(--grey-5)",p.style.marginLeft="24px",p.querySelectorAll("tr.header > td").forEach((e,i)=>{if(!e.textContent)return;const n=0===i?"Name":c[i-1];if(s&&n===s.columnName){const i=s.ascending?"↑":"↓";e.appendChild(t.span([i],{style:{fontSize:"12px",marginLeft:"2px"}}))}e.addEventListener("dblclick",()=>{let e={columnName:n,ascending:!0};var t;s&&n===s.columnName&&(e=s.ascending?{columnName:n,ascending:!1}:null),(t=e)?ve(M,JSON.stringify(t)):localStorage.removeItem(M),this.refreshCampaignsTable()})}),xe(p,l),p})}setCampaign(e){return Ke(this,void 0,void 0,function*(){const t=yield this.checkCampaign(e);this.app.campaign=t})}getNewCampaignAccordeon(e,i){return Ke(this,void 0,void 0,function*(){t.setUpdateIndicator(i,!0);const{root:n,promise:o,cancelPromise:a}=yield Fe(e,this.getDataSourceFunctionsMap(),this.getDataSourceTag());return t.setUpdateIndicator(i,!1),o.then(t=>Ke(this,void 0,void 0,function*(){this.app.dataFrame=t.df,this.app._fileInputType=t.type,yield this.app.setTemplate(e,void 0,void 0,void 0,t.friendlyName),this.app.campaignProps=t.campaignProps,yield this.app.saveCampaign(void 0,!1),e.layoutViewState&&this.app.campaign&&(this.app.campaign.layout=e.layoutViewState)})),a.then(()=>{this.init()}),n})}createNewTemplate(t){return Ke(this,void 0,void 0,function*(){const i=yield je(this.app,this.getDataSourceFunctionsMap(),t),n=new o.ViewBase,a=e.shell.v;n.name="New Template",n.root.appendChild(i.root),n.parentCall=this.app.parentCall,e.shell.addView(n),n.path=new URL(this.app.baseUrl).pathname+"/new-template",n.parentView=a;const{sub:s}=le(e.shell.v,this.app.appName,T,()=>{e.shell.v=a,n.close()});i.template.then(t=>Ke(this,void 0,void 0,function*(){yield this.init(t),n.close(),ce(n),e.shell.v=a,s.unsubscribe()})),i.cancelPromise.then(()=>{s.unsubscribe(),n.close(),e.shell.v=a})})}}class Xe extends qe{constructor(e){super(e),this.name="Submit"}render(){return t.empty(this.root),t.divV([t.h1("Summary"),t.div([t.tableFromMap(this.app.getSummary())])])}onActivated(){this.render()}submit(){return t=this,i=void 0,a=function*(){const t=this.app.submitParams;if(!t)return;const i=o.Func.find({name:t.fName,package:t.package})[0];if(!i)return void e.shell.error(`Function ${t.fName} not found.`);const n=o.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield i.apply({df:n,molecules:this.app.molColName}),this.app.campaign&&(this.app.campaign.status="Submitted"),this.app.saveCampaign("Submitted"),e.shell.info("Submitted successfully.")},new((n=void 0)||(n=Promise))(function(e,o){function s(e){try{l(a.next(e))}catch(e){o(e)}}function r(e){try{l(a.throw(e))}catch(e){o(e)}}function l(t){var i;t.done?e(t.value):(i=t.value,i instanceof n?i:new n(function(e){e(i)})).then(s,r)}l((a=a.apply(t,i||[])).next())});var t,i,n,a}}var et,tt,it=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(s,r)}l((n=n.apply(e,t||[])).next())})};!function(t){t.acquireCampaignLock=function(t,i,n){return it(this,void 0,void 0,function*(){return yield e.data.query("HitTriage:AcquireCampaignLock",{appName:t,campaignId:i,lockedBy:n})})},t.releaseCampaignLock=function(t,i){return it(this,void 0,void 0,function*(){return yield e.data.query("HitTriage:ReleaseCampaignLock",{appName:t,campaignId:i})})},t.getLastModified=function(t,i){return it(this,void 0,void 0,function*(){return yield e.data.query("HitTriage:GetLastModified",{appName:t,campaignId:i})})},t.addMolecule=function(t,i,n,o){return it(this,void 0,void 0,function*(){return yield e.data.query("HitTriage:AddMolecule",{canonicalSmiles:t,appName:i,campaignId:n,createdBy:o})})},t.addMolecules=function(t,i,n,o){return it(this,void 0,void 0,function*(){return yield e.data.query("HitTriage:AddMolecules",{smiles:t,appName:i,campaignId:n,createdBy:o})})},t.getMoleculeByVid=function(t){return it(this,void 0,void 0,function*(){return yield e.data.query("HitTriage:GetMoleculeByVid",{vid:t})})},t.getCampaignsByVid=function(t,i){return it(this,void 0,void 0,function*(){return yield e.data.query("HitTriage:GetCampaignsByVid",{vid:t,appName:i})})}}(et||(et={})),function(t){t.hitTriageAppTreeBrowser=function(t){return it(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:HitTriageAppTreeBrowser",{treeNode:t})})},t.hitDesignAppTreeBrowser=function(t){return it(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:HitDesignAppTreeBrowser",{treeNode:t})})},t.peptiHitAppTreeBrowser=function(t){return it(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:PeptiHitAppTreeBrowser",{treeNode:t})})},t.hitTriageApp=function(){return it(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:HitTriageApp",{})})},t.hitDesignApp=function(){return it(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:HitDesignApp",{})})},t.peptiHitApp=function(){return it(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:PeptiHitApp",{})})},t.pepTriageAppTreeBrowser=function(t){return it(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:PepTriageAppTreeBrowser",{treeNode:t})})},t.pepTriageApp=function(){return it(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:PepTriageApp",{})})},t.demoFileIngest=function(){return it(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:DemoFileIngest",{})})},t.demoFileIngest1=function(){return it(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:DemoFileIngest1",{})})},t.demoFileIngest2=function(t){return it(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:DemoFileIngest2",{numberOfMolecules:t})})},t.demoPeptideSequences=function(t){return it(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:DemoPeptideSequences",{peptideCount:t})})},t.demoFileSubmit=function(t,i){return it(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:DemoFileSubmit",{df:t,molecules:i})})},t.registerMoleculesToViD=function(){return it(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:RegisterMoleculesToViD",{})})},t.hitDesignVidPanel=function(t){return it(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:HitDesignVidPanel",{vid:t})})},t.gasteigerCellRenderer=function(){return it(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:GasteigerCellRenderer",{})})},t.htPackageSettingEditor=function(t){return it(this,void 0,void 0,function*(){return yield e.functions.call("HitTriage:HtPackageSettingEditor",{propList:t})})}}(tt||(tt={}));var nt=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(s,r)}l((n=n.apply(e,t||[])).next())})};class ot{get appName(){return this._appName}constructor(e,t){this.parentCall=e,this.isJoining=!1,this.hasEditPermission=!1,this.baseUrl=new URL(window.location.href).origin+`/apps/HitTriage/${t.replace(" ","")}`,this._appName=t,this.computeFunctions=function(e){const t=Array.from(new Set(o.Func.find({meta:{role:e}}).concat(o.Func.find({tags:[e]}))));return{functions:t.filter(e=>e.type===s),scripts:t.filter(e=>e.type===a),queries:t.filter(e=>e.type===r)}}("HitTriageFunction")}setCanEdit(e){return nt(this,void 0,void 0,function*(){e.authorUserId&&e.permissions?this.hasEditPermission=yield pe(e.authorUserId,e.permissions):this.hasEditPermission=!0})}getFilterType(e){const t=this.dataFrame.col(e);return(null==t?void 0:t.semType)===o.SEMTYPE.MOLECULE?o.FILTER_TYPE.SUBSTRUCTURE:(null==t?void 0:t.type)===o.COLUMN_TYPE.BOOL?o.FILTER_TYPE.BOOL_COLUMNS:(null==t?void 0:t.type)===o.COLUMN_TYPE.STRING?o.FILTER_TYPE.CATEGORICAL:o.FILTER_TYPE.HISTOGRAM}download(e,t,i=!1){const n=document.createElement("a"),a=o.DataFrame.fromColumns(e.columns.toList().filter(e=>!e.name.startsWith("~"))).toCsv({filteredRowsOnly:i});n.setAttribute("href","data:text/plain;charset=utf-8,"+encodeURIComponent(a)),n.setAttribute("download",t+".csv"),n.click()}getNewCampaignName(e,t){return nt(this,void 0,void 0,function*(){const i=(yield mi.files.list(e)).map(e=>e.name).filter(e=>e.startsWith(`${t}-`)&&!!parseInt(e.substring(t.length+1)));if(0===i.length)return t+"-1";const n=i.map(e=>e.substring(t.length+1)).filter(Boolean).map(e=>parseInt(e,10)).sort((e,t)=>e-t);return t+"-"+(n[n.length-1]+1).toString()})}setBaseUrl(){const e=document.title;if(history.replaceState){const t={Title:e,Url:this.baseUrl};history.replaceState(t,t.Title,t.Url)}}unionDataframes(e,t,i,n){var a,s,r,l;const c=i;e.col(i).name=n,i=n;const d=null===(s=null===(a=e.col(i))||void 0===a?void 0:a.toList())||void 0===s?void 0:s.map(e=>mi.convertToSmiles(e)),u=null===(l=null===(r=t.col(n))||void 0===r?void 0:r.toList())||void 0===l?void 0:l.map(e=>mi.convertToSmiles(e));if(!d||!u)throw new Error("Molecule column not found");const p=new Map;u.forEach((e,t)=>{e&&"MALFORMED_INPUT_VALUE"!==e&&p.set(e,t)});const m=(e,t,i,n)=>{try{if(e.type===t.type)e.set(i,t.get(n),!1);else if(e.type===o.COLUMN_TYPE.STRING)e.set(i,t.getString(n),!1);else if(e.type===o.COLUMN_TYPE.INT){const o=t.get(n);"number"==typeof o?e.set(i,Math.round(o),!1):"string"==typeof o&&o.length>0&&!isNaN(Number(o))&&e.set(i,Math.round(Number(o)),!1)}else if(e.type===o.COLUMN_TYPE.FLOAT){const o=t.get(n);"number"==typeof o?e.set(i,o,!1):"string"==typeof o&&o.length>0&&!isNaN(Number(o))&&e.set(i,Number(o),!1)}else e.set(i,t.get(n),!1)}catch(o){mi.logger.error(`Error setting column value for column ${e.name} at row ${i} from column ${t.name} at row ${n}: ${o}`)}};this.isJoining=!0;try{const i=[];for(const n of e.columns)if(!t.columns.contains(n.name)){const e=t.columns.addNew(n.name,n.type);n.semType&&(e.semType=n.semType),i.push(n.name)}for(let n=0;n<d.length;n++)if(d[n]&&"MALFORMED_INPUT_VALUE"!==d[n])if(p.has(d[n])){if(i.length>0){const o=p.get(d[n]);for(const a of i)m(t.col(a),e.col(a),o,n)}}else{t.rows.addNew(null,!0);for(const i of e.columns)m(t.col(i.name),i,t.rowCount-1,n)}}finally{setTimeout(()=>{this.isJoining=!1},500),e.col(i).name=c}return t}aquireAndWaitCampaignLock(e){return nt(this,arguments,void 0,function*(e,t=3e4){var i;const n=Date.now();let a=0,s=null;const r=o.User.current(),l=r&&(r.friendlyName||r.name)||"unknown";for(;Date.now()-n<t&&a<5;)try{const t=yield et.acquireCampaignLock(this.appName,e,l);if(t&&t.rowCount>0)return{aquired:!0,expires_at:null===(i=null==t?void 0:t.col("expires_at"))||void 0===i?void 0:i.getString(0)};s=null,yield o.delay(200)}catch(e){s=e,a++}if(s)throw s;return{aquired:!1,expires_at:null}})}releaseCampaignLock(e){return nt(this,void 0,void 0,function*(){var t,i;return(null===(i=null===(t=yield et.releaseCampaignLock(this.appName,e))||void 0===t?void 0:t.col("updated_at"))||void 0===i?void 0:i.getString(0))||null})}}ot.molFileExtReaders=["sdf","mol","smi","mol2"].map(e=>{const t=o.Func.find({meta:{role:o.FUNC_TYPES.FILE_IMPORTER}}).concat(o.Func.find({tags:["file-handler"]})).find(t=>{var i;return(null===(i=null==t?void 0:t.options)||void 0===i?void 0:i.ext)&&"string"==typeof t.options.ext&&t.options.ext.split(",").includes(e)});return{ext:e,handlerFunc:t}}).filter(e=>e.handlerFunc);var at=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(s,r)}l((n=n.apply(e,t||[])).next())})},st=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(s,r)}l((n=n.apply(e,t||[])).next())})};function rt(){return{convertToSmiles:e=>mi.convertToSmiles(e),logger:mi.logger,molColName:A}}function lt(t,i,n){return st(this,arguments,void 0,function*(t,i,n,s=[],l=[]){return async function(t,i,n,s=[],l=[],c){var d,u,p;const m=o.TaskBarProgressIndicator.create("Calculating ..."),h=null!==(d=null==c?void 0:c.convertToSmiles)&&void 0!==d?d:e=>e,v=null!==(u=null==c?void 0:c.logger)&&void 0!==u?u:console,f=null!==(p=null==c?void 0:c.molColName)&&void 0!==p?p:"Molecule",g=t.map(e=>h(e)),y=o.Column.fromStrings(f,g),A=o.DataFrame.fromColumns([y]);A.name="HD cell values",await A.meta.detectSemanticTypes();const w=[];w.push(new Promise(async t=>{try{i.length&&await e.chem.descriptors(A,y.name,i)}catch(e){v.error("Descriptors calculation error"),v.error(e)}t()}));for(const e of n)w.push(new Promise(async t=>{try{const i=e.args,n=o.Func.find({package:e.package,name:e.name});if(!n.length||!n[0])return console.warn(`Function ${e.name} from package ${e.package} is not found`),void t();const a=n[0],s=a.inputs[0].name,r=a.inputs[1].name;await a.apply({...i,[s]:A,[r]:y.name})}catch(e){v.error(e)}t()}));for(const e of s){const t=e.args;w.push(new Promise(async i=>{try{const i=o.Func.find({name:e.name}).filter(t=>t.type===a&&t.id===e.id)[0];if(i){const e=i.inputs[0].name,n=i.inputs[1].name,o=await i.apply({...t,[e]:A,[n]:y.name});if(o&&o.rowCount===A.rowCount&&"python"===i.language)for(const e of o.columns)e.name=A.columns.getUnusedName(e.name),A.columns.add(e)}}catch(e){v.error(e)}i()}))}for(const e of l){const t=e.args;w.push(new Promise(async i=>{try{const n=o.Func.find({name:e.name}).filter(t=>t.type===r&&t.id===e.id)[0];if(n){const e=n.inputs[0].name,o=[g],a=await n.apply({...t,[e]:o});if(!a||0===a.rowCount)return void i();await oe(A,f,a)}}catch(e){v.error(e)}i()}))}await Promise.all(w),m.close();const b=A.col(f);for(let e=0;e<b.length;e++)b.set(e,t[e],!1);return A}(t,i,n,s,l,rt())})}function ct(t,i,n){return st(this,void 0,void 0,function*(){return async function(t,i,n,s){var l,c,d,u;const p=o.TaskBarProgressIndicator.create("Calculating ..."),m=null!==(l=null==s?void 0:s.convertToSmiles)&&void 0!==l?l:e=>e,h=null!==(c=null==s?void 0:s.logger)&&void 0!==c?c:console,v=i.col(n);if(!v)throw new Error("There is no molecule column in dataframe");const f=`~${n}.canonicalSmiles`,g=i.columns.getOrCreate(f,o.TYPE.STRING);g.semType=o.SEMTYPE.MOLECULE;const y=v.toList();for(let e=0;e<y.length;e++){if(v.isNone(e))continue;const t=y[e];if(!t)continue;const i=m(t);g.set(e,i,!1)}const A=[];A.push(new Promise(async n=>{try{t.descriptors&&t.descriptors.length>0&&await e.chem.descriptors(i,f,t.descriptors)}catch(e){h.error("Descriptors calculation error"),h.error(e)}n()}));for(const e of Object.keys(t.externals))A.push(new Promise(async n=>{try{const n=t.externals[e],a=o.Func.find({package:e.split(":")[0],name:e.split(":")[1]})[0],s=a.inputs[0].name,r=a.inputs[1].name;n&&await a.apply({...n,[s]:i,[r]:f})}catch(e){h.error(e)}n()}));for(const e of Object.keys(null!==(d=t.scripts)&&void 0!==d?d:{})){const n=t.scripts[e];A.push(new Promise(async t=>{if(n){const s=e.split(":"),r=s[2];if(!r)return void t();try{const e=s[1],l=o.Func.find({name:e}).filter(e=>e.type===a&&e.id===r)[0];if(!l)return void t();const c=l.inputs[0].name,d=l.inputs[1].name,u=await l.apply({...n,[c]:i,[d]:f});if(u&&u.rowCount===i.rowCount&&"python"===l.language)for(const e of u.columns)e.name=i.columns.getUnusedName(e.name),i.columns.add(e)}catch(e){h.error(e)}}t()}))}for(const e of Object.keys(null!==(u=t.queries)&&void 0!==u?u:{})){const n=t.queries[e];A.push(new Promise(async t=>{if(n){const a=e.split(":"),s=a[2];if(!s)return void t();try{const e=a[1],l=o.Func.find({name:e}).filter(e=>e.type===r&&e.id===s)[0];if(!l)return void t();const c=l.inputs[0].name,d=await l.apply({...n,[c]:g.toList()});d&&await oe(i,f,d)}catch(e){console.error(e)}}t()}))}await Promise.all(A),p.close()}(t,i,n,rt())})}var dt=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(s,r)}l((n=n.apply(e,t||[])).next())})};class ut extends ot{get infoView(){return this._infoView}constructor(t,i="Hit Triage",n=e=>new Ze(e)){super(t,i),this._filterViewName="Hit Triage | Pick",this._filterDescriptions=[],this.campaignProps={},this._pickViewPromise=null,this._infoView=n(this),this.multiView=new o.MultiView({viewFactories:{[this._infoView.name]:()=>this._infoView}}),this.multiView.tabs.onTabChanged.subscribe(e=>{this.multiView.currentView instanceof qe&&this.multiView.currentView.onActivated()}),this.multiView.parentCall=t,e.events.onCurrentViewChanged.subscribe(()=>{var t,i,n,o;try{(null===(t=e.shell.v)||void 0===t?void 0:t.name)===this.currentPickViewId&&(e.shell.windows.showHelp=!1,this.setBaseUrl(),re(u,null!==(o=null!==(i=this._campaignId)&&void 0!==i?i:null===(n=this._campaign)||void 0===n?void 0:n.name)&&void 0!==o?o:""))}catch(e){console.error(e)}})}get submitParams(){var e,t,i,n;return null!==(i=null===(t=null===(e=this.campaign)||void 0===e?void 0:e.template)||void 0===t?void 0:t.submit)&&void 0!==i?i:null===(n=this.template)||void 0===n?void 0:n.submit}prepareDataFrame(e){return dt(this,void 0,void 0,function*(){})}setTemplate(t,i,n,a,s){return dt(this,void 0,void 0,function*(){var r,d,p,m,h,v,f,g,y,A,w,b,C,E,T,x,S,N,B,I;if(this._friendlyName=null!=s?s:null===(r=this._campaign)||void 0===r?void 0:r.friendlyName,(null===(d=this._pickView)||void 0===d?void 0:d.dataFrame)&&e.shell.closeTable(null===(p=this._pickView)||void 0===p?void 0:p.dataFrame),this._pickView=void 0,n?a&&(this._fileInputType=a.type,"File"===a.type?this.dataFrame=yield e.dapi.files.readCsv(a.query):this.dataFrame=yield e.functions.call(a.query)):(n=yield this.getNewCampaignName(`${this.appName}/campaigns`,t.key),re(u,n)),!this.dataFrame)return void console.error("Dataframe is empty.");if((null===(m=this._campaign)||void 0===m?void 0:m.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach(([e,t])=>{const i=this.dataFrame.columns.byName(e);i&&i.semType!==t&&(i.semType=t)}),(null===(h=this._campaign)||void 0===h?void 0:h.columnTypes)&&Object.entries(this._campaign.columnTypes).forEach(([e,t])=>{const i=this.dataFrame.columns.byName(e);if(i&&i.type!==t)try{i.convertTo(t)}catch(e){console.error(e)}}),yield this.dataFrame.meta.detectSemanticTypes(),yield this.prepareDataFrame(t),this._molColName=null!==(f=null===(v=this.dataFrame.columns.bySemType(o.SEMTYPE.MOLECULE))||void 0===v?void 0:v.name)&&void 0!==f?f:void 0,this._dfName=null!==(g=this.dataFrame.name)&&void 0!==g?g:null==a?void 0:a.query,this.dataFrame.name=null!==(A=null!==(y=this._dfName)&&void 0!==y?y:this.dataFrame.name)&&void 0!==A?A:"Molecules",this._campaignId=n,this.template=(null===(w=this.campaign)||void 0===w?void 0:w.template)?Object.assign(Object.assign({},this.campaign.template),{dataSourceType:t.dataSourceType,queryFunctionName:t.queryFunctionName}):t,this._campaignFilters=i,!i){const e={},i={},n={};t.compute.functions.forEach(t=>{const i=`${t.package}:${t.name}`;e[i]=t.args}),null===(b=t.compute.scripts)||void 0===b||b.forEach(e=>{const t=`${l}:${e.name}:${e.id}`;i[t]=e.args}),null===(C=t.compute.queries)||void 0===C||C.forEach(e=>{const t=`${c}:${e.name}:${e.id}`;n[t]=e.args}),yield ct({descriptors:t.compute.descriptors.enabled?t.compute.descriptors.args:[],externals:e,scripts:i,queries:n},this.dataFrame,this._molColName)}this.campaign?yield this.setCanEdit(this.campaign):this.hasEditPermission=!0,this._filterViewName=`${this.appName} | ${null!==(T=null!==(E=this._friendlyName)&&void 0!==E?E:this._campaignId)&&void 0!==T?T:"Pick"}`;const F=e.shell.v,P=e.shell.addView(this.pickView);this.currentPickViewId=P.name,this._submitView=new Xe(this),this.setBaseUrl(),re(u,null!==(N=null!==(x=this._campaignId)&&void 0!==x?x:null===(S=this._campaign)||void 0===S?void 0:S.name)&&void 0!==N?N:"");const _=P,k=null!==(I=null!==(B=this._friendlyName)&&void 0!==B?B:this._campaignId)&&void 0!==I?I:"Pick";setTimeout(()=>{this._pickViewPromise&&this._pickViewPromise.then(()=>{const{sub:t}=le(_,this.appName,k,()=>{e.shell.v=F,_.close(),t.unsubscribe()})})},300),e.shell.windows.showHelp=!1})}get filterSettings(){return this._campaignFilters}get campaignId(){return this._campaignId}get pickView(){return this._pickView=this.getFilterView()}get molColName(){var e,t,i;return null!==(e=this._molColName)&&void 0!==e?e:this._molColName=null===(i=null===(t=this.dataFrame)||void 0===t?void 0:t.columns.bySemType(o.SEMTYPE.MOLECULE))||void 0===i?void 0:i.name}get fileInputType(){return this._fileInputType}get campaign(){return this._campaign}set campaign(e){this._campaign=e}getFilterView(){let e=null;this._pickViewPromise=new Promise(t=>{e=t}),this.dataFrame.col(g)||this.dataFrame.columns.addNewBool(g).init(!1);const i=o.TableView.create(this.dataFrame,!1);let n=i.getRibbonPanels();const a=t.iconFA("wrench",()=>dt(this,void 0,void 0,function*(){Oe(this,e=>dt(this,void 0,void 0,function*(){var t,i,n,o,a,s,r;const d=this.template.compute.descriptors.args,u=this.template.compute.functions,p=null!==(t=this.template.compute.scripts)&&void 0!==t?t:[],m=null!==(i=this.template.compute.queries)&&void 0!==i?i:[],h=e.descriptors,v={descriptors:{enabled:!!(null===(n=null==e?void 0:e.descriptors)||void 0===n?void 0:n.length),args:null!==(o=null==e?void 0:e.descriptors)&&void 0!==o?o:[]},functions:Object.entries(null!==(a=null==e?void 0:e.externals)&&void 0!==a?a:{}).map(([e,t])=>{const i=e.split(":");return{name:i[1],package:i[0],args:t}}),scripts:Object.entries(null!==(s=null==e?void 0:e.scripts)&&void 0!==s?s:{}).filter(([e,t])=>e.startsWith(l)&&3===e.split(":").length).map(([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}}),queries:Object.entries(null!==(r=null==e?void 0:e.queries)&&void 0!==r?r:{}).filter(([e,t])=>e.startsWith(c)&&3===e.split(":").length).map(([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}})};this.template.compute=v;const f=h.filter(e=>!d.includes(e)),g=v.functions.filter(e=>{if(!u.some(t=>t.name===e.name&&t.package===e.package))return!0;const t=u.find(t=>t.name===e.name&&t.package===e.package);return!Object.entries(e.args).every(([e,i])=>t.args[e]===i)}),y=v.scripts.filter(e=>{if(!p.some(t=>t.id===e.id))return!0;const t=p.find(t=>t.id===e.id);return!Object.entries(e.args).every(([e,i])=>t.args[e]===i)}),A=v.queries.filter(e=>{if(!m.some(t=>t.id===e.id))return!0;const t=m.find(t=>t.id===e.id);return!Object.entries(e.args).every(([e,i])=>t.args[e]===i)}),w={};g.forEach(e=>{const t=`${e.package}:${e.name}`;w[t]=e.args});const b={};y.forEach(e=>{const t=`${l}:${e.name}:${e.id}`;b[t]=e.args});const C={};A.forEach(e=>{const t=`${c}:${e.name}:${e.id}`;C[t]=e.args}),yield ct({descriptors:f,externals:w,scripts:b,queries:C},this.dataFrame,this._molColName),this.saveCampaign("In Progress",!1)}),()=>null,this.template,!0)}),"Calculate additional properties"),s=t.bigButton("Submit",()=>{var e;const i=null===(e=this._submitView)||void 0===e?void 0:e.render();if(i){const e=t.dialog("Submit");e.add(i),e.addButton("Save",()=>{this.saveCampaign(),e.close()}),e.addButton("Submit",()=>{var t;null===(t=this._submitView)||void 0===t||t.submit(),e.close()}),e.show()}}),r=t.iconFA("share",()=>dt(this,void 0,void 0,function*(){var e;yield new Qe(null===(e=this.campaign)||void 0===e?void 0:e.permissions).show(e=>{this.campaign.permissions=e,this.saveCampaign(void 0,!0)})}),"Edit permissions");s.classList.add("hit-design-submit-button");const d=de(n);return n.push([a,...this.hasEditPermission?[r]:[],...d?[]:[s]]),n.some(e=>{var t;const i=null!==(t=null==e?void 0:e.findIndex(e=>{var t;return"save"===(null===(t=null==e?void 0:e.textContent)||void 0===t?void 0:t.toLowerCase())}))&&void 0!==t?t:-1;return-1!==i&&(e.splice(i,1),!0)}),n=n.filter(e=>{var t;return(null!==(t=null==e?void 0:e.length)&&void 0!==t?t:0)>0}),i.setRibbonPanels(n),i.name=this._filterViewName,setTimeout(()=>dt(this,void 0,void 0,function*(){var t,n,a;i._onAdded(),yield new Promise(e=>setTimeout(e,1e3));const s=i.filters(this._campaignFilters?{filters:this._campaignFilters}:void 0),r=null!==(n=null===(t=this._campaign)||void 0===t?void 0:t.layout)&&void 0!==n?n:null===(a=this.template)||void 0===a?void 0:a.layoutViewState;if(r)try{const e=o.ViewLayout.fromViewState(r);i.loadLayout(e)}catch(e){console.error(e)}i.dataFrame.onFilterChanged.subscribe(e=>{this._filterDescriptions=Array.from(i.dataFrame.rows.filters),this._campaignFilters=s.getOptions().look.filters}),setTimeout(()=>{this._filterDescriptions=Array.from(i.dataFrame.rows.filters),this._campaignFilters=s.getOptions().look.filters},300),e&&e()}),300),i.parentCall=this.parentCall,i}getSummary(){var e,i,n,o,a,s,r;const l=null!==(i=null===(e=this.campaign)||void 0===e?void 0:e.campaignFields)&&void 0!==i?i:this.campaignProps;return Object.assign(Object.assign({Template:null!==(o=null===(n=this.template)||void 0===n?void 0:n.name)&&void 0!==o?o:"Molecules","File path":t.divH([t.link(null!==(a=this._dfName)&&void 0!==a?a:"-",()=>this.download(this.dataFrame,"molecules"),N)],{style:{alignItems:"center"}})},l),{"Number of molecules":this.dataFrame.rowCount.toString(),"Enrichment methods":[this.template.compute.descriptors.enabled?"descriptors":"",...this.template.compute.functions.map(e=>e.name)].filter(e=>e&&""!==e.trim()).join(", "),Filters:this._filterDescriptions.join(", "),"Result Molecules":t.divH([t.link(null!==(r=null===(s=this.dataFrame)||void 0===s?void 0:s.filter.trueCount.toString())&&void 0!==r?r:"0",()=>{this.download(this.dataFrame,"hits",!0)},N)],{style:{alignItems:"center"}})})}saveCampaign(i){return dt(this,arguments,void 0,function*(i,n=!0){var a,s,r,l,c,d,u,p,h,v,f,g,y,A,w;const b=this.campaignId,C=this.filterSettings,E=this.template.name,T=this.dataFrame,x=`System:AppData/HitTriage/${this.appName}/campaigns/${b}/`,S=null!=b?b:yield function(e){return at(this,void 0,void 0,function*(){return new Promise(i=>at(this,void 0,void 0,function*(){const n=t.input.string("Campaign name",{value:""});t.dialog("Save Campaign").add(t.div(n.root)).onOK(function(){n.value&&""!==n.value?i(n.value):i(e)}).show()}))})}(b),N={};T.columns.toList().forEach(e=>N[e.name]=e.semType);const B={};T.columns.toList().forEach(e=>B[e.name]=e.type);const I=null!==(s=null===(a=this.campaign)||void 0===a?void 0:a.authorUserId)&&void 0!==s?s:e.shell.user.id,F=null!==(l=null===(r=this.campaign)||void 0===r?void 0:r.permissions)&&void 0!==l?l:Je,P=I?null!==(d=null===(c=this.campaign)||void 0===c?void 0:c.authorUserFriendlyName)&&void 0!==d?d:null===(u=yield e.dapi.users.find(I))||void 0===u?void 0:u.friendlyName:void 0,_={name:S,friendlyName:null!==(p=this._friendlyName)&&void 0!==p?p:null===(h=this.campaign)||void 0===h?void 0:h.friendlyName,templateName:E,filters:null!=C?C:{},ingest:{type:"File",query:`${x}${m}`,molColName:this.molColName},status:null!==(f=null!=i?i:null===(v=this.campaign)||void 0===v?void 0:v.status)&&void 0!==f?f:"In Progress",createDate:null!==(y=null===(g=this.campaign)||void 0===g?void 0:g.createDate)&&void 0!==y?y:se(new Date),campaignFields:null!==(w=null===(A=this.campaign)||void 0===A?void 0:A.campaignFields)&&void 0!==w?w:this.campaignProps,columnSemTypes:N,rowCount:T.rowCount,filteredRowCount:T.filter.trueCount,template:this.template,columnTypes:B,authorUserId:I,authorUserFriendlyName:P,lastModifiedUserName:e.shell.user.friendlyName,permissions:F};if(this.campaign=_,!this.hasEditPermission)return e.shell.error("You do not have permission to modify this campaign"),_;const k=o.DataFrame.fromColumns(T.columns.toList().filter(e=>!e.name.startsWith("~"))).toCsv();yield mi.files.writeAsText(`${this.appName}/campaigns/${b}/${m}`,k);const V=this._pickView.saveLayout();return V?_.layout=V.viewState:e.shell.warning("Layout cound not be saved"),yield mi.saveCampaignJson(this.appName,_),n&&e.shell.info("Campaign saved successfully."),_})}}function pt(i,n=!1){var a,s;const r=o.DataFrame.create(1);if(n){const e=r.columns.addNew(w,o.TYPE.STRING);e.semType=o.SEMTYPE.MACROMOLECULE,e.meta.units="helm",e.setTag("units","helm"),e.setTag("cell.renderer","helm"),e.setTag(".alphabetIsMultichar","true")}const l=r.columns.addNew(A,o.TYPE.STRING);l.semType=o.SEMTYPE.MOLECULE,l.meta.units=o.UNITS.Molecule.SMILES,l.set(0,null),(null===(a=null==i?void 0:i.stages)||void 0===a?void 0:a.length)>0&&r.columns.addNew(y,o.TYPE.STRING).set(0,i.stages[0]),r.columns.addNew(b,o.TYPE.STRING);const c=i.campaignFields.map(e=>e.type===o.SEMTYPE.MOLECULE?Object.assign(Object.assign({},e),{type:"String",semtype:o.SEMTYPE.MOLECULE}):e).map(e=>o.Property.fromOptions(Object.assign({name:e.name,type:Be[e.type],nullable:!e.required},e.semtype?{semType:e.semtype}:{}))),d={},u=t.input.string("Campaing Name",{tooltipText:"New campaign name. If empty, campaign code will be used."}),p=t.input.form(d,c);p.prepend(u.root),p.classList.remove("ui-form");const m=t.div([...(null===(s=i.campaignFields)||void 0===s||s.length,[]),p]),h=t.buttonsInput([]);return m.appendChild(h),{promise:new Promise(n=>{const o=t.bigButton(x,()=>{for(const t of i.campaignFields)if(t.required&&(!d[t.name]||""===d[t.name]))return void e.shell.error(`Field '${t.name}' is required`);n({df:r,campaignProps:d,name:u.value})});h.appendChild(o)}),root:m,cancelPromise:new Promise(e=>{t.button(B,()=>e())})}}var mt=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(s,r)}l((n=n.apply(e,t||[])).next())})};function ht(i,n){return mt(this,void 0,void 0,function*(){var a,s,r,d,u,p,m,h,v,g,y;const A=yield mi.files.list(`${i.appName}/templates`);let w=!1,b=!1;const C=A.map(e=>e.name.slice(0,-5)),E=[];for(const e of A)try{const t=JSON.parse(yield mi.files.readAsText(e));E.push(t.key)}catch(e){console.error(e)}const T=Array.from(new Set(o.Func.find({meta:{role:f}}).concat(o.Func.find({tags:[f]})))),x={};T.forEach(e=>{var t;x[null!==(t=e.friendlyName)&&void 0!==t?t:e.name]=e});const N=t.input.choice("Submit function",{value:null,items:[null,...Object.keys(x)]});N.nullable=!0,N.value=null!==(s=null===(a=null==n?void 0:n.submit)||void 0===a?void 0:a.fName)&&void 0!==s?s:null,N.setTooltip("Select function to be called upon submitting");const I=t.divText("Template name is empty or already exists",{classes:"hit-triage-error-div"}),F=t.divText("Template key is empty or already exists",{classes:"hit-triage-error-div"}),P=Me();function _(){var e,t,i,n;if(""===k.value||C.includes(null!==(t=null===(e=k.value)||void 0===e?void 0:e.trim())&&void 0!==t?t:"")){const e=null!==(i=k.input.offsetLeft)&&void 0!==i?i:0,t=null!==(n=k.input.offsetWidth)&&void 0!==n?n:0;I.style.marginLeft=`${e}px`,I.style.width=`${t}px`,I.style.opacity="100%",I.style.borderTop="1px solid red",w=!0}else I.style.borderTop="none",I.style.opacity="0%",w=!1}const k=t.input.string("Name",{value:null!==(r=null==n?void 0:n.name)&&void 0!==r?r:"",onValueChanged:_});function V(){var e,t,i,n;if(""===L.value||E.includes(null!==(t=null===(e=L.value)||void 0===e?void 0:e.trim())&&void 0!==t?t:"")){const e=null!==(i=L.input.offsetLeft)&&void 0!==i?i:0,t=null!==(n=L.input.offsetWidth)&&void 0!==n?n:0;F.style.marginLeft=`${e}px`,F.style.width=`${t}px`,F.style.borderTop="1px solid red",F.style.opacity="100%",b=!0}else F.style.opacity="0%",F.style.borderTop="none",b=!1}const L=t.input.string("Key",{value:null!==(d=null==n?void 0:n.key)&&void 0!==d?d:"",onValueChanged:V});L.setTooltip("Template key used for campaign prefix"),k.setTooltip("Template name"),k.root.style.borderBottom="none",L.root.style.borderBottom="none",I.style.opacity="0%",F.style.opacity="0%";let O=null;const D={compute:{descriptors:{enabled:!0,args:null!==(m=null===(p=null===(u=null==n?void 0:n.compute)||void 0===u?void 0:u.descriptors)||void 0===p?void 0:p.args)&&void 0!==m?m:[]},functions:null!==(v=null===(h=null==n?void 0:n.compute)||void 0===h?void 0:h.functions)&&void 0!==v?v:[]}},$=yield Oe(i,e=>{O=e},()=>null,D,!1);$.root.classList.add("hit-triage-new-template-functions-input");const M=Ue(null==n?void 0:n.campaignFields),R=vt(null==n?void 0:n.stages),j=t.divV([t.divV([k,I]),t.divV([L,F]),P.dataFileInput,M.fieldsDiv]),U=t.h2("Stages");t.tooltip.bind(U,'Define Stages for designed molecules. For example, "Design", "Synthesis", "Test", etc.');const H=t.h2("Compute");t.tooltip.bind(H,'Define functions to be calculated for each molecule. For example, "Descriptors", "Descriptors:Descriptors", etc.');const q=t.div([t.h2("Details"),j,U,R.fieldsDiv,H,$.root,t.h2("Submit"),N.root],"ui-form"),Y=t.buttonsInput([]);q.appendChild(Y);const G=null!==(y=null===(g=Y.getElementsByClassName("ui-input-editor"))||void 0===g?void 0:g[0])&&void 0!==y?y:Y,W=new Promise(e=>{const i=t.button(B,()=>e());G.appendChild(i)}),z=new Promise(n=>{const o=t.bigButton(S,()=>function(){return mt(this,void 0,void 0,function*(){var t,o,a,s,r,d,u;if(_(),V(),$.okProxy(),w||!k.value||""===k.value)return void e.shell.error("Template name is empty or already exists");if(b||!L.value||""===L.value)return void e.shell.error("Template key is empty or already exists");const p=N.value?x[N.value]:void 0,m=Object.assign({name:k.value,key:L.value,campaignFields:M.getFields(),stages:R.getFields(),layoutViewState:null!==(t=P.getLayoutViewState())&&void 0!==t?t:void 0,localLayoutPath:null!==(o=P.getLocalFilePath())&&void 0!==o?o:void 0,compute:{descriptors:{enabled:!!(null===(a=null==O?void 0:O.descriptors)||void 0===a?void 0:a.length),args:null!==(s=null==O?void 0:O.descriptors)&&void 0!==s?s:[]},functions:Object.entries(null!==(r=null==O?void 0:O.externals)&&void 0!==r?r:{}).map(([e,t])=>{const i=e.split(":");return{name:i[1],package:i[0],args:t}}),scripts:Object.entries(null!==(d=null==O?void 0:O.scripts)&&void 0!==d?d:{}).filter(([e,t])=>e.startsWith(l)&&3===e.split(":").length).map(([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}}),queries:Object.entries(null!==(u=null==O?void 0:O.queries)&&void 0!==u?u:{}).filter(([e,t])=>e.startsWith(c)&&3===e.split(":").length).map(([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}})}},p?{submit:{fName:p.name,package:ne(p)}}:{});yield function(e,t){return mt(this,void 0,void 0,function*(){yield mi.files.writeAsText(`${t}/templates/${e.name}.json`,JSON.stringify(e))})}(m,i.appName),e.shell.info("Template created successfully"),n(m)})}());G.appendChild(o)});return{root:q,template:z,cancelPromise:W}})}function vt(e){const t=[o.Property.fromOptions({name:"Name",type:o.TYPE.STRING})],i=new $e(t,e?e.map(e=>({Name:e})):void 0,{horizontalInputNames:!0});let n={};return i.onItemAdded.subscribe(e=>{n={}}),i.onAddingItemChanged.subscribe(e=>{e&&(n=e.item)}),{getFields:function(){const e=i.items.filter(e=>e.Name).map(e=>e.Name);return n.Name&&""!==n.Name&&e.push(n.Name),e},fieldsDiv:i.root,itemsGrid:i}}var ft=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(s,r)}l((n=n.apply(e,t||[])).next())})};class gt extends qe{constructor(t){super(t),this.currentGroupping="None",this.campaignsTableRoot=null,this.name="Hit Design",e.shell.windows.showHelp=!0,e.shell.windows.help.showHelp(mi.webRoot+"README_HD.md"),this.checkCampaign().then(e=>{this.app.campaign=e,this.init()})}onActivated(){e.shell.windows.showHelp=!0,e.shell.windows.help.showHelp(mi.webRoot+"README_HD.md")}getAppHeader(){return We.appHeader({iconPath:mi.webRoot+"/images/icons/hit-design-icon.png",learnMoreUrl:"https://github.com/datagrok-ai/public/blob/master/packages/HitTriage/README_HD.md",description:"-  Configure your own workflow using the template editor\n-  Sketch molecules in the molecular spreadsheet\n-  Annotate and share ideas with the team\n-  Calculate different molecular properties\n-  Save campaigns and continue from where you left off\n-  Submit final selection to the function of your choice"})}refreshCampaignsTable(){return ft(this,void 0,void 0,function*(){if(null!=this.campaignsTableRoot){t.setUpdateIndicator(this.campaignsTableRoot,!0);try{const e=yield this.getCampaignsTable();t.setUpdateIndicator(this.campaignsTableRoot,!1),t.empty(this.campaignsTableRoot),this.campaignsTableRoot.appendChild(e)}catch(t){e.shell.error("Failed to update campaigns table"),console.error(t)}finally{t.setUpdateIndicator(this.campaignsTableRoot,!1)}}})}init(e){return ft(this,void 0,void 0,function*(){t.setUpdateIndicator(this.root,!0);try{const i=t.h1(I),n=t.h1(F,{style:{marginLeft:"10px"}}),a=this.getAppHeader(),s=t.div(),r=t.divH([]),l=t.div([r,s],"ui-form"),c=yield this.getCampaignsTable();this.campaignsTableRoot=t.div([c],{style:{position:"relative"}});const d=t.iconFA("layer-group",()=>ft(this,void 0,void 0,function*(){const e=o.Menu.popup();Object.values(L).forEach(t=>{e.item(t,()=>ft(this,void 0,void 0,function*(){fe(t),yield this.refreshCampaignsTable()}))});const t=e.group("Campaign Fields"),i=yield mi.loadCampaigns(this.app.appName,this.deletedCampaigns),n=new Set;Object.values(i).forEach(e=>{e.campaignFields&&Object.keys(e.campaignFields).forEach(e=>n.add(e))}),Array.from(n).forEach(e=>{t.item(e,()=>ft(this,void 0,void 0,function*(){fe(`campaignFields.${e}`),yield this.refreshCampaignsTable()}))}),e.show({element:m,x:120,y:m.offsetTop+30})}));d.style.marginBottom="9px",d.style.marginLeft="8px",d.style.fontSize="15px",d.style.color="var(--blue-1)",t.tooltip.bind(d,()=>`Group Campaigns. Current: ${this.currentGroupping}`);const u=t.iconFA("eye",()=>ft(this,void 0,void 0,function*(){const e=o.Menu.popup(),t=yield mi.loadCampaigns(this.app.appName,this.deletedCampaigns),i=Object.assign({},O);delete i.Name,Object.values(t).forEach(e=>{e.campaignFields&&Object.keys(e.campaignFields).forEach(e=>{i[`campaignFields.${e}`]=t=>{var i,n;return null!==(n=null===(i=t.campaignFields)||void 0===i?void 0:i[e])&&void 0!==n?n:""}})});const n=ye().reduce((e,t)=>(e[t]=!0,e),{});Object.keys(i).filter(e=>!e.startsWith("campaignFields.")).forEach(t=>{var i;e.item(t,()=>{n[t]=!n[t],Ae(Object.keys(n).filter(e=>n[e])),this.refreshCampaignsTable()},null,{check:null!==(i=n[t])&&void 0!==i&&i})});const a=e.group("Campaign Fields");Object.keys(i).filter(e=>e.startsWith("campaignFields.")).forEach(e=>{var t;a.item(e.replace("campaignFields.",""),()=>{n[e]=!n[e],Ae(Object.keys(n).filter(e=>n[e])),this.refreshCampaignsTable()},null,{check:null!==(t=n[e])&&void 0!==t&&t})}),e.show({element:m,x:100,y:m.offsetTop+30})}));t.tooltip.bind(u,"Edit visible columns in campaigns table"),u.style.marginBottom="9px",u.style.marginLeft="8px",u.style.fontSize="15px",u.style.color="var(--blue-1)";const p=t.iconFA("sync",()=>ft(this,void 0,void 0,function*(){yield this.refreshCampaignsTable()}));p.style.marginBottom="9px",p.style.marginLeft="8px",p.style.color="var(--blue-1)",t.tooltip.bind(p,()=>"Refresh campaigns table");const m=t.divH([i,u,d,p],{style:{alignItems:"center"}});_e()(this.root).empty(),this.root.appendChild(t.div([t.divV([a,m],{style:{marginLeft:"10px"}}),this.campaignsTableRoot,n,l],{classes:"hit-triage-info-view-container"})),yield this.startNewCampaign(s,r,e)}finally{t.setUpdateIndicator(this.root,!1)}})}startNewCampaign(i,n,o){return ft(this,void 0,void 0,function*(){var a;const s=(yield mi.files.list(`${this.app.appName}/templates`)).filter(e=>e.name.endsWith(".json")).map(e=>e.name.slice(0,-5));o&&!s.includes(o.name)&&s.push(o.name);let r=null,l=!0;const c=()=>ft(this,void 0,void 0,function*(){if(!l)return;const e=d.value,t=o&&o.name===e?o:yield Ne(`${this.app.appName}/templates/${e}.json`);r=t;const n=yield this.getNewCampaignAccordeon(t);_e()(i).empty(),i.appendChild(n)}),d=t.input.choice("Template",{value:null!==(a=null==o?void 0:o.name)&&void 0!==a?a:s[0],items:s,onValueChanged:()=>ft(this,void 0,void 0,function*(){yield c()})});d.root.style.width="100%";const u=t.icons.add(()=>{this.createNewTemplate()},T),p=t.icons.copy(()=>{r&&this.createNewTemplate(r)},"Clone template"),m=t.icons.delete(()=>{!d.value||d.items.length<2||t.dialog("Delete template").add(t.divText(`Are you sure you want to delete template ${d.value}?`)).onOK(()=>ft(this,void 0,void 0,function*(){try{const t=d.value;yield mi.files.delete(`${this.app.appName}/templates/${t}.json`),l=!1,d.items=d.items.filter(e=>e!==t),d.value=d.items[0],l=!0,yield c(),e.shell.info("Template "+t+" was deleted successfully")}catch(t){l=!0,e.shell.error("Failed to delete template "+d.value),console.error(t)}})).show()},"Delete template");m.style.color="var(--blue-1)",u.style.color="#2083d5",d.addOptions(u),d.addOptions(p),d.addOptions(m),yield c(),_e()(n).empty(),n.appendChild(d.root)})}checkCampaign(e){return ft(this,void 0,void 0,function*(){var t;const i=location.search,n=new URLSearchParams(i);if(!n.has(p)&&!e)return;const o=null!=e?e:n.get(p);if(!(yield mi.files.exists(`${this.app.appName}/campaigns/${o}/${h}`)))return;const a=JSON.parse(yield mi.files.readAsText(`${this.app.appName}/campaigns/${o}/${h}`));if(a){if(a.authorUserId&&a.permissions&&!(yield me(a.authorUserId,a.permissions)))return void this.app.setBaseUrl();this.app.campaign=a}const s=null!==(t=a.template)&&void 0!==t?t:yield Ne(`${this.app.appName}/templates/${a.templateName}.json`);return yield this.app.setTemplate(s,o),e&&re(p,e),a.template=s,a})}getCampaignsTable(){return ft(this,void 0,void 0,function*(){const i=yield mi.loadCampaigns(this.app.appName,this.deletedCampaigns),n=null!==(a=he(_))&&void 0!==a?a:L.None;var a;const s=function(){const e=he(V);return e?JSON.parse(e):null}(),r=Object.values(i);s&&ge(r,s);const l=Te(r,n),c=ye();this.currentGroupping=n,this.app.existingStatuses=Array.from(new Set(r.map(e=>e.status).filter(e=>!!e)));const d=i=>{var n,a;const s=t.icons.delete(()=>ft(this,void 0,void 0,function*(){t.dialog("Delete campaign").add(t.divText(`Are you sure you want to delete campaign ${i.name}?`)).onOK(()=>ft(this,void 0,void 0,function*(){yield this.deleteCampaign(this.app.appName,i.name),this.deletedCampaigns.push(i.name),yield this.init()})).show()}),"Delete campaign"),r=t.iconFA("share",()=>ft(this,void 0,void 0,function*(){yield new Qe(i.permissions).show(t=>ft(this,void 0,void 0,function*(){var n;try{i.permissions=t,null!==(n=i.authorUserId)&&void 0!==n||(i.authorUserId=e.shell.user.id),yield mi.saveCampaignJson(this.app.appName,i),e.shell.info("Permissions updated for campaign "+i.name)}catch(t){e.shell.error("Failed to update permissions for campaign "+i.name),console.error(t)}}))}),"Manage campaign permissions");return s.style.display="none",r.style.display="none",pe(null!==(n=i.authorUserId)&&void 0!==n?n:o.User.current().id,null!==(a=i.permissions)&&void 0!==a?a:Je).then(e=>{e&&(s.style.display="inline-block",r.style.display="inline-block")}),s.style.color="var(--blue-1)",r.style.color="var(--blue-1)",[r,s]},u=t.table(Object.values(l).flat(),e=>{var i;return[t.link(null!==(i=e.friendlyName)&&void 0!==i?i:e.name,()=>this.setCampaign(e.name),"Continue Campaign",""),...c.map(t=>{var i,n,o;return t.startsWith("campaignFields.")?null!==(n=null===(i=e.campaignFields)||void 0===i?void 0:i[t.replace("campaignFields.","")])&&void 0!==n?n:"":null!==(o=O[t](e))&&void 0!==o?o:""}),...d(e)]},["Name",...c.map(e=>e.replace("campaignFields.","")),"",""]);return u.style.color="var(--grey-5)",u.style.marginLeft="24px",u.querySelectorAll("tr.header > td").forEach((e,i)=>{if(!e.textContent)return;const n=0===i?"Name":c[i-1];if(s&&n===s.columnName){const i=s.ascending?"↑":"↓";e.appendChild(t.span([i],{style:{fontSize:"12px",marginLeft:"2px"}}))}e.addEventListener("dblclick",()=>{let e={columnName:n,ascending:!0};var t;s&&n===s.columnName&&(e=s.ascending?{columnName:n,ascending:!1}:null),(t=e)?ve(V,JSON.stringify(t)):localStorage.removeItem(V),this.refreshCampaignsTable()})}),xe(u,l),u})}setCampaign(e){return ft(this,void 0,void 0,function*(){const t=yield this.checkCampaign(e);this.app.campaign=t})}getNewCampaignAccordeon(e){return ft(this,void 0,void 0,function*(){const{root:t,promise:i,cancelPromise:n}=pt(e);return i.then(t=>ft(this,void 0,void 0,function*(){var i,n;this.app.clearCampaign(),this.app.dataFrame=t.df,yield this.app.setTemplate(e),this.app.campaignProps=t.campaignProps;const o=(null===(i=t.name)||void 0===i?void 0:i.trim())?null===(n=t.name)||void 0===n?void 0:n.trim():void 0;yield this.app.saveCampaign(!1,!0,{friendlyName:o}),e.layoutViewState&&this.app.campaign&&(this.app.campaign.layout=e.layoutViewState)})),n.then(()=>{this.init()}),t})}createNewTemplate(i){return ft(this,void 0,void 0,function*(){t.setUpdateIndicator(this.root,!0);try{const t=yield ht(this.app,i),n=new o.ViewBase,a=e.shell.v;n.name="New Template",n.root.appendChild(t.root),n.parentCall=this.app.parentCall,e.shell.addView(n),n.path=new URL(this.app.baseUrl).pathname+"/new-template";const{sub:s}=le(n,this.app.appName,T,()=>ft(this,void 0,void 0,function*(){e.shell.v=a,n.close()}));t.template.then(t=>ft(this,void 0,void 0,function*(){yield this.init(t),n.close(),ce(n),e.shell.v=a,s.unsubscribe()})),t.cancelPromise.then(()=>ft(this,void 0,void 0,function*(){s.unsubscribe(),n.close(),e.shell.v=a}))}finally{t.setUpdateIndicator(this.root,!1)}})}}class yt extends qe{constructor(e){var i;super(e),this.name="Submit",this.statusInput=t.input.string("Status",{value:null===(i=this.app.campaign)||void 0===i?void 0:i.status,nullable:!1}),this.statusSuggestionsMenu=o.Menu.popup(),this.statusInput.root.style.marginLeft="12px",this.content=t.div(),this.statusInput.onChanged.subscribe(()=>{var e,t,i,n;this.statusSuggestionsMenu.clear();const o=(null!==(e=this.statusInput.value)&&void 0!==e?e:"").toLowerCase(),a=this.app.existingStatuses.filter(e=>{var t;return(null===(t=null==e?void 0:e.toLowerCase())||void 0===t?void 0:t.includes(o))&&(null==e?void 0:e.toLowerCase())!==o}).filter((e,t)=>t<5);if(a.length){if(a.forEach(e=>{this.statusSuggestionsMenu.item(e,()=>{this.statusInput.value=e,this.statusSuggestionsMenu.root.remove(),this.statusInput.root.focus()})}),null===(t=this.content.parentElement)||void 0===t?void 0:t.parentElement){const e=this.statusInput.root.offsetLeft+(null!==(n=null===(i=this.statusInput.input)||void 0===i?void 0:i.offsetLeft)&&void 0!==n?n:0),t=this.statusInput.root.offsetTop+this.statusInput.root.offsetHeight+this.content.parentElement.offsetTop;this.statusSuggestionsMenu.show({element:this.content.parentElement.parentElement,x:e,y:t})}}else this.statusSuggestionsMenu.root.remove()})}getStatus(){var e,t,i;return null!==(i=null!==(e=this.statusInput.value)&&void 0!==e?e:null===(t=this.app.campaign)||void 0===t?void 0:t.status)&&void 0!==i?i:"No Status"}render(){var e,i,n;this.statusInput.value=null!==(i=null===(e=this.app.campaign)||void 0===e?void 0:e.status)&&void 0!==i?i:"",t.empty(this.content),this.content=t.divV([t.h1("Summary"),t.div([t.tableFromMap(this.app.getSummary())]),this.statusInput.root]);const a=t.dialog("Submit");a.add(this.content),a.addButton("Save",()=>{this.app.campaign.status=this.getStatus(),this.app.saveCampaign(),a.close()}),a.show();const s=Array.from(new Set(o.Func.find({meta:{role:f}}).concat(o.Func.find({tags:[f]})))),r=s.reduce((e,t)=>{var i;return e[null!==(i=t.friendlyName)&&void 0!==i?i:t.name]=t,e},{});if(s.length>0){const e=this.app.submitParams,i=e?s.find(t=>t.name===e.fName&&ne(t)==e.package):void 0,o=null!==(n=null==i?void 0:i.friendlyName)&&void 0!==n?n:null==i?void 0:i.name,l=t.input.choice("Submit function",{value:o,items:[...Object.keys(r)],nullable:!0});l.onChanged.subscribe(()=>{var e,t;const i=r[null!==(e=l.value)&&void 0!==e?e:""];this.app.campaign.template.submit=i?{fName:i.name,package:ne(i)}:void 0,null===(t=a.getButton("Submit"))||void 0===t||t.remove(),i&&a.addButton("Submit",()=>{this.submit(),a.close()},void 0,"Submit the campaign file to the specified function")}),l.fireChanged(),this.content.appendChild(l.root)}}onActivated(){}submit(){return t=this,i=void 0,a=function*(){const t=this.app.submitParams;if(!t)return void e.shell.error("No submit function selected. Please select a function to submit the campaign.");const i=o.Func.find({name:t.fName,package:t.package})[0];if(!i)return void e.shell.error(`Function ${t.fName} not found.`);const n=o.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield i.apply({df:n,molecules:this.app.molColName}),this.app.campaign.status=this.getStatus(),this.app.saveCampaign(),e.shell.info("Submitted successfully.")},new((n=void 0)||(n=Promise))(function(e,o){function s(e){try{l(a.next(e))}catch(e){o(e)}}function r(e){try{l(a.throw(e))}catch(e){o(e)}}function l(t){var i;t.done?e(t.value):(i=t.value,i instanceof n?i:new n(function(e){e(i)})).then(s,r)}l((a=a.apply(t,i||[])).next())});var t,i,n,a}}var At=i(542),wt={};wt.styleTagTransform=X(),wt.setAttributes=J(),wt.insert=W().bind(null,"head"),wt.domAPI=Y(),wt.insertStyleElement=K(),H()(At.A,wt),At.A&&At.A.locals&&At.A.locals;function bt(i,n){var a,s,r,l,c,d,u,p,m,h;const v=null===(a=i.campaign)||void 0===a?void 0:a.tilesViewerFormSketch;let f=null;if(v&&v.length>0)try{f=JSON.parse(v)}catch(e){console.error("Failed to parse sketch state string",e)}f&&f.elementStates&&(null!==(s=f.elementStates.length)&&void 0!==s?s:0)>0&&(f.elementStates=f.elementStates.filter(e=>{var t;return(null===(t=null==e?void 0:e.viewerSettings)||void 0===t?void 0:t.column)&&i.dataFrame.col(e.viewerSettings.column)}),f.elementStates.forEach(e=>{var t;(null===(t=null==e?void 0:e.viewerSettings)||void 0===t?void 0:t.table)&&(e.viewerSettings.table=i.dataFrame.name)}));const g=Object.assign({lanesColumnName:y,lanes:i.stages},(null!==(l=null===(r=null==f?void 0:f.elementStates)||void 0===r?void 0:r.length)&&void 0!==l?l:0)>0?{sketchState:f}:{}),A=n();if(!A)return void e.shell.error("Failed to create tiles viewer. table view is not available.");let w=null;const b=t.dialog("Progress Tracker");try{w=A.addViewer(o.VIEWER.TILE_VIEWER,g);const e=w.getOptions();e.look.sketchState=(null!==(d=null===(c=null==f?void 0:f.elementStates)||void 0===c?void 0:c.length)&&void 0!==d?d:0)>0?f:null,w.setOptions(e),w.copyViewersLook(w)}catch(t){e.shell.error("Failed to create tiles viewer with preset layout.\n Falling back to default layout."),console.error("Failed to create tiles viewer",t),w&&(w.close(),w.detach()),w=A.addViewer(o.VIEWER.TILE_VIEWER,{lanesColumnName:y,lanes:i.stages})}if(!w)return void e.shell.error("Failed to create tiles viewer. check the console for more details.");let C=null;const E=()=>{try{w.detach(),w.close()}catch(e){}};b.add(w.root),b.addButton("Modify Stages",()=>{null==C||C.close();const o=vt(i.stages);C=t.dialog("Modify Stages").add(o.fieldsDiv).onOK(()=>{return a=this,s=void 0,l=function*(){E(),t.setUpdateIndicator(b.root,!0);try{yield i.setStages(o.getFields()),t.setUpdateIndicator(b.root,!1),b.close(),yield new Promise(e=>setTimeout(()=>{e(),bt(i,n)},100))}catch(t){e.shell.error("Failed to update stages. check the console for more details."),console.error("Failed to update stages",t)}finally{(null==b?void 0:b.root)&&document.contains(b.root)&&b.close()}},new((r=void 0)||(r=Promise))(function(e,t){function i(e){try{o(l.next(e))}catch(e){t(e)}}function n(e){try{o(l.throw(e))}catch(e){t(e)}}function o(t){var o;t.done?e(t.value):(o=t.value,o instanceof r?o:new r(function(e){e(o)})).then(i,n)}o((l=l.apply(a,s||[])).next())});var a,s,r,l}).show(),C.root.classList.add("hit-design-stage-editing-dialog")},0);const T=e.events.onCurrentViewChanged.subscribe(()=>{e.shell.v===A?b.root.style.display="flex":b.root.style.setProperty("display","none","important")}),x=null===(p=null===(u=i.dataFrame)||void 0===u?void 0:u.col(y))||void 0===p?void 0:p.version,S=b.onClose.subscribe(()=>{var t,n;S.unsubscribe(),T.unsubscribe(),null==C||C.close();try{const e=w.props.sketchState;if(e&&"object"==typeof e){const t=JSON.stringify(e);i.campaign&&(i.campaign.tilesViewerFormSketch=t)}}catch(t){e.shell.error("Failed to save sketch state. check the console for more details."),console.error("Failed to save sketch state",t)}E(),null!=x&&(null===(n=null===(t=i.dataFrame)||void 0===t?void 0:t.col(y))||void 0===n?void 0:n.version)!==x&&i.saveCampaign()});b.showModal(!0),null===(m=b.getButton("CANCEL"))||void 0===m||m.remove(),b.onOK(()=>{}),null===(h=document.querySelector(".d4-modal-background"))||void 0===h||h.remove()}const Ct=rxjs.operators;var Et=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(s,r)}l((n=n.apply(e,t||[])).next())})};const Tt="defaultCampaignFolder",xt="System.AppData/HitTriage";function St(t){return Et(this,void 0,void 0,function*(){if(!t)return[yield e.dapi.groups.find(o.Group.defaultGroupsIds["All users"])].filter(Boolean);try{const i=JSON.parse(t);return(yield Promise.all(i.map(t=>e.dapi.groups.find(t)))).filter(Boolean)}catch(t){return console.error(t),[yield e.dapi.groups.find(o.Group.defaultGroupsIds["All users"])].filter(Boolean)}})}var Nt=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(s,r)}l((n=n.apply(e,t||[])).next())})};function Bt(e){var t;const i=null===(t=mi.meta)||void 0===t?void 0:t.sok;if(!i)throw new Error("Secret key for SMILES obfuscation is not set");let n="";for(let t=0;t<e.length;t++){const o=e.charCodeAt(t),a=i.charCodeAt(t%i.length);n+=String.fromCharCode(o^a)}return btoa(n)}function It(){var e,t,i;const n=o.User.current();return null!==(i=null!==(t=null!==(e=null==n?void 0:n.login)&&void 0!==e?e:null==n?void 0:n.friendlyName)&&void 0!==t?t:n.name)&&void 0!==i?i:"unknown user"}function Ft(t,i,n){return Nt(this,void 0,void 0,function*(){const o=mi.convertToSmiles(t);if(!o||""===o||"MALFORMED_INPUT_VALUE"===o)return"";const a=Bt(o),s=yield et.addMolecule(a,n,i,It());return 0!==s.rowCount&&s.col("vid")?s.col("vid").getString(0):(e.shell.error("Molecule registration returned no data"),"")})}function Pt(t,i,n){return Nt(this,void 0,void 0,function*(){const o=new Map,a=new Map;if(t.forEach((e,t)=>{const i=mi.convertToSmiles(e);i&&""!==i&&"MALFORMED_INPUT_VALUE"!==i&&(a.has(i)||a.set(i,[]),a.get(i).push(t))}),0===a.size)return o;const s=Array.from(a.keys());for(let r=0;r<s.length;r+=50){const l=s.slice(r,r+50);if(0!==l.length)try{const e=l.map(e=>Bt(e)),s=yield et.addMolecules(e,n,i,It());if(!s||s.rowCount!==l.length||!s.col("vid"))throw console.error("Molecule registration returned incomplete data for batch",`${r}-${r+l.length}`,`Batch size: ${l.length}, Result rows: ${null==s?void 0:s.rowCount}. Vid column found: ${!!(null==s?void 0:s.col("vid"))}`),new Error("Resulting molecule registration has no or incomplete data");const c=s.col("vid").toList();for(let e=0;e<s.rowCount;e++){const i=a.get(l[e]),n=c[e];for(const e of i)o.set(t[e],n)}}catch(t){e.shell.error("Error registering molecules batch. see console for details."),mi.logger.error(t)}}return o})}var _t=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(s,r)}l((n=n.apply(e,t||[])).next())})};class kt extends ot{get infoView(){return this._infoView}get version(){var e,t;return null!==(t=null===(e=this._campaign)||void 0===e?void 0:e.version)&&void 0!==t?t:0}constructor(e,t="Hit Design",i=e=>new gt(e)){super(e,t),this._designViewName="Design",this._filePath=`System.AppData/HitTriage/${this.appName}/campaigns`,this._molColName=A,this.campaignProps={},this.existingStatuses=[],this._refreshIconTooltip="Refresh Campaign",this._updateCheckIntervalId=null,this._needsRefresh=!1,this._lastExpiresTimeString=null,this._refreshCampaignIcon=null,this._gridSubs=null,this._isSaving=!1,this._infoView=i(this),this.multiView=new o.MultiView({viewFactories:{[this._infoView.name]:()=>this._infoView}}),this.multiView.subs.push(this.multiView.tabs.onTabChanged.subscribe(e=>{this.multiView.currentView instanceof qe&&this.multiView.currentView.onActivated()})),this.multiView.parentCall=e,this.mainView=this.multiView,this._initViewSubs()}handleJoiningDataframe(i){return _t(this,void 0,void 0,function*(){var n,a,s,r,l,c;const d=i.columns.bySemTypeAll(o.SEMTYPE.MOLECULE);if(!d||0===d.length)return void e.shell.error("No molecule column found");let u=null;if(d.length>1){const i=d.map(e=>e.name),o=null!==(n=d.find(e=>{var t,i;return"smiles"===(null===(t=null==e?void 0:e.name)||void 0===t?void 0:t.toLowerCase())||"molecule"===(null===(i=null==e?void 0:e.name)||void 0===i?void 0:i.toLowerCase())}))&&void 0!==n?n:d[0],a=t.input.choice("Primary Molecule Column",{items:i,value:o.name,nullable:!1}),s=new Promise(e=>{t.dialog("Select Primary Molecule Column").add(t.divText("Multiple molecule columns found. Please select the primary molecule column to be used for calculations.")).add(a).onOK(()=>e(a.value)).onCancel(()=>e(null)).show()});if(u=yield s,!u)return void e.shell.info("Operation cancelled by user")}else u=d[0].name;const p=i.col(u);if(!p)return void e.shell.error("No molecule column found");const m=null!==(r=null===(s=null===(a=this.campaign)||void 0===a?void 0:a.template)||void 0===s?void 0:s.compute)&&void 0!==r?r:null===(l=this.template)||void 0===l?void 0:l.compute;if(!m)return void e.shell.warning("No compute functions found");const h=p.toList(),v=m.descriptors.enabled&&null!==(c=m.descriptors.args)&&void 0!==c?c:[],f=yield lt(h,v,m.functions,m.scripts,m.queries);if(this.unionDataframes(f,i,A,p.name),this.stages.length>0&&this.dataFrame.columns.contains(y)){const e=i.columns.getOrCreate(y,o.TYPE.STRING);for(let t=0;t<i.rowCount;t++)e.isNone(t)&&e.set(t,this.stages[0],!1)}i.columns.contains(b)&&i.columns.remove(b);const g=i.columns.addNewString(b),w=yield Pt(h,this._campaignId,this.appName);for(let e=0;e<i.rowCount;e++){const t=p.get(e),i=w.get(t);i&&g.set(e,i)}this.unionDataframes(i,this.dataFrame,p.name,this.molColName),this.saveCampaign(!1)})}get submitParams(){var e,t,i,n;return null!==(i=null===(t=null===(e=this.campaign)||void 0===e?void 0:e.template)||void 0===t?void 0:t.submit)&&void 0!==i?i:null===(n=this.template)||void 0===n?void 0:n.submit}_initViewSubs(){this.multiView.subs.push(e.events.onCurrentViewChanged.subscribe(()=>_t(this,void 0,void 0,function*(){var t,i,n,o;try{if(e.shell.v===this._designView){e.shell.windows.showHelp=!1,this.setBaseUrl(),re(u,null!==(n=null!==(t=this._campaignId)&&void 0!==t?t:null===(i=this._campaign)||void 0===i?void 0:i.name)&&void 0!==n?n:"");const{sub:a}=le(e.shell.v,this.appName,null===(o=e.shell.v)||void 0===o?void 0:o.name,()=>{var t;e.shell.v=this.mainView,null===(t=this._designView)||void 0===t||t.close(),this._infoView.init(),a.unsubscribe()})}else e.shell.v===this.mainView&&this.setBaseUrl()}catch(e){console.error(e)}}))),this.multiView.subs.push(e.events.onFileImportRequest.subscribe(t=>{var i,n;if(!e.shell.tv||!this._designView||e.shell.tv!==this._designView)return;if(!(null===(i=null==t?void 0:t.args)||void 0===i?void 0:i.file))return;const o=t.args.file;((null===(n=o.name)||void 0===n?void 0:n.endsWith(".csv"))||ot.molFileExtReaders.some(e=>{var t;return null===(t=o.name)||void 0===t?void 0:t.endsWith(e.ext)}))&&(t.preventDefault(),this.handleUploadingDataframe(o))}))}handleUploadingDataframe(i){return _t(this,void 0,void 0,function*(){var n;try{let a=null;if(i.name.endsWith(".csv"))a=o.DataFrame.fromCsv(yield i.text());else{const t=yield new Promise(e=>_t(this,void 0,void 0,function*(){const t=new FileReader;let n=null,o=null;t.onload=()=>{o=t.result?new Uint8Array(t.result):null,n&&clearTimeout(n),e(o)},t.readAsArrayBuffer(i),n=setTimeout(()=>{t.abort(),e(null)},1e4)}));if(!t)return void e.shell.error("Failed to read file");const n=ot.molFileExtReaders.find(e=>i.name.endsWith(e.ext)).handlerFunc,o=n.inputs[0].name;a=(yield n.apply({[o]:t}))[0]}if(!a)throw new Error("Failed to read file");if(a.name=i.name.slice(0,i.name.lastIndexOf(".")),yield a.meta.detectSemanticTypes(),yield e.data.detectSemanticTypes(a),!a.columns.bySemType(o.SEMTYPE.MOLECULE))return void e.shell.addTableView(a);const s=t.dialog("Uploading table with molecules").add(t.divText("Add new table to workspace or join with existing Hit Design campaign")).addButton("Add to workspace",()=>{s.close(),e.shell.addTableView(a)}).addButton("Add to existing campaign",()=>{s.close(),this.handleJoiningDataframe(a)});null===(n=s.getButton("CANCEL"))||void 0===n||n.remove(),s.show()}catch(t){e.shell.error("Hit Design Failed to read file"),console.error(t)}})}get stages(){var e,t,i,n,o;return null!==(o=null!==(i=null===(t=null===(e=this.campaign)||void 0===e?void 0:e.template)||void 0===t?void 0:t.stages)&&void 0!==i?i:null===(n=this.template)||void 0===n?void 0:n.stages)&&void 0!==o?o:[]}setStages(t){return _t(this,void 0,void 0,function*(){var i;if(!this.campaign||!this.campaign.template||!this.template)return void e.shell.error("Campaign or template is not set");if(!(null==t?void 0:t.length))return void e.shell.error("Removing all stages is not allowed");const n=null===(i=this.dataFrame)||void 0===i?void 0:i.col(y);if(!n)return void e.shell.error("No stage column found");const o=[],a=new Set(t),s=[...a],r=this.dataFrame.rowCount,l=n.categories,c=n.getRawData();for(let e=0;e<r;e++){const i=l[c[e]];a.has(i)||(n.set(e,t[0],!1),o.push(i))}o.length>0&&e.shell.warning(`Some stages were removed: (${o.join(", ")}). Corresponding rows were set to stage "${t[0]}"`),this.campaign.template.stages=s,this.template.stages=s,yield this.saveCampaign(!0)})}refreshCampaign(){return _t(this,void 0,void 0,function*(){this._campaignId&&this.template?this._isSaving?e.shell.info("Campaign is being saved. Please wait a moment and try again."):(clearInterval(this._updateCheckIntervalId),this._refreshIconTooltip="Refresh Campaign",yield this.setTemplate(this.template,this._campaignId)):e.shell.warning("No campaign to refresh")})}setTemplate(i,n){return _t(this,void 0,void 0,function*(){var a,s,r,l,c,d,h,v,f,g,y;if(n){const t=`System.AppData/HitTriage/${this.appName}/campaigns`;this._filePath=null!==(r=null===(s=this.campaign)||void 0===s?void 0:s.savePath)&&void 0!==r?r:`${t}/${n}/${m}`,this.dataFrame=yield e.dapi.files.readCsv(this._filePath),(null===(l=this._campaign)||void 0===l?void 0:l.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach(([e,t])=>{const i=this.dataFrame.columns.byName(e);i&&t&&(i.semType=t)}),(null===(c=this._campaign)||void 0===c?void 0:c.columnTypes)&&Object.entries(this._campaign.columnTypes).forEach(([e,t])=>{const i=this.dataFrame.columns.byName(e);if(i&&i.type!==t)try{this.dataFrame.changeColumnType(e,t)}catch(e){console.error(e)}})}else{(null===(a=this._designView)||void 0===a?void 0:a.dataFrame)&&e.shell.closeTable(this._designView.dataFrame),this._designView=void 0,n=yield this.getNewCampaignName(`${this.appName}/campaigns`,i.key),re(p,n);let t=yield function(){return Et(this,void 0,void 0,function*(){var t,i;const n=null!==(t=mi.settings)&&void 0!==t?t:yield mi.getSettings();if(!n)return xt;const o=null!==(i=n instanceof Map?n.get(Tt):n[Tt])&&void 0!==i?i:xt;return(yield e.dapi.files.exists(o))?o:xt})}();t.endsWith("/")||(t+="/"),this._filePath=`${t}${this.appName}/campaigns/${n}/${m}`}if(!this.dataFrame)return e.shell.error("DataFrame is empty"),clearInterval(this._updateCheckIntervalId),void(this._updateCheckIntervalId=null);yield this.dataFrame.meta.detectSemanticTypes(),this._molColName=null!==(h=null===(d=this.dataFrame.columns.bySemType(o.SEMTYPE.MOLECULE))||void 0===d?void 0:d.name)&&void 0!==h?h:A,this._campaignId=n,this.template=i,null!==(v=this._submitView)&&void 0!==v||(this._submitView=new yt(this)),e.shell.windows.showHelp=!1,this.campaign?yield this.setCanEdit(this.campaign):this.hasEditPermission=!0;const w=this.designView;this.currentDesignViewId=w.name,this.setBaseUrl(),re(u,null!==(y=null!==(f=this._campaignId)&&void 0!==f?f:null===(g=this._campaign)||void 0===g?void 0:g.name)&&void 0!==y?y:""),this.campaign&&(this.campaign.template=i),et.getLastModified(this.appName,this._campaignId).then(i=>{var n;const o=null===(n=null==i?void 0:i.col("updated_at"))||void 0===n?void 0:n.getString(0);this._lastExpiresTimeString=null!=o?o:null,this._needsRefresh=!1,clearInterval(this._updateCheckIntervalId);let a=!1;this._updateCheckIntervalId=setInterval(()=>_t(this,void 0,void 0,function*(){var i;if(!a&&!this._needsRefresh){if(a=!0,this._designView&&!Array.from(e.shell.tableViews).some(e=>e===this._designView))return clearInterval(this._updateCheckIntervalId),console.log("Clearing campaign update check interval"),this._updateCheckIntervalId=null,void(a=!1);if(this._campaignId&&this.template&&!this._isSaving&&!this.isJoining&&this._designView&&e.shell.v===this._designView){try{const e=yield et.getLastModified(this.appName,this._campaignId),n=null===(i=null==e?void 0:e.col("updated_at"))||void 0===i?void 0:i.getString(0);if(!n)return void(a=!1);this._lastExpiresTimeString!==n&&this._refreshCampaignIcon&&(this._lastExpiresTimeString=n,t.hints.addHintIndicator(this._refreshCampaignIcon,!0,1e4),this._refreshIconTooltip="New changes available. Click to refresh campaign.",this._lastExpiresTimeString=n,this._needsRefresh=!0)}catch(e){console.error(e)}a=!1}else a=!1}}),3e3)}).catch(e=>console.error(e))})}get campaignId(){return this._campaignId}get designView(){return this._designView=this.getDesignView()}get designViewName(){return this._designViewName}set designViewName(e){this._designViewName=e,this._designView&&(this._designView.name=e)}get molColName(){var e,t,i,n;return null!==(e=this._molColName)&&void 0!==e?e:this._molColName=null!==(n=null===(i=null===(t=this.dataFrame)||void 0===t?void 0:t.columns.bySemType(o.SEMTYPE.MOLECULE))||void 0===i?void 0:i.name)&&void 0!==n?n:A}get campaign(){return this._campaign}set campaign(e){this._campaign=e}clearCampaign(){this._campaign=void 0}cacheDuplicateVIDs(){var e;const t=null===(e=this.dataFrame)||void 0===e?void 0:e.col(b);if(!t)return void(this._duplicateVidCache=void 0);const i=t.version,n=new Uint32Array(t.categories.length).fill(0),o=t.getRawData().subarray(0,t.length);o.forEach(e=>n[e]++),this._duplicateVidCache={colVersion:i,valueCounts:n,indexes:o}}get duplicateVidCache(){var e;const t=null===(e=this.dataFrame)||void 0===e?void 0:e.col(b);if(t)return this._duplicateVidCache&&t.version===this._duplicateVidCache.colVersion||this.cacheDuplicateVIDs(),this._duplicateVidCache}performSingleCellCalculations(e,t){return _t(this,void 0,void 0,function*(){const i=this.template.compute;if(!t||""===t)return;const n=yield lt([t],i.descriptors.args,i.functions,i.scripts,i.queries);for(const t of n.columns.toList())t.name!==A&&(this.dataFrame.columns.contains(t.name)||(this.dataFrame.columns.addNew(t.name,t.type).semType=t.semType),this.dataFrame.col(t.name).set(e,t.get(0),!1));this.dataFrame.fireValuesChanged(),this.saveCampaign(!1)})}initDesignViewRibbons(i,n,a=!1){var s,r,d;const u=e.events.onViewRemoved.subscribe(e=>{e.id===(null==i?void 0:i.id)&&(n.forEach(e=>e.unsubscribe()),u.unsubscribe())});let p=null==i?void 0:i.getRibbonPanels();if(p&&!de(p)){setTimeout(()=>{const{sub:t}=le(i,this.appName,i.name,()=>{e.shell.v=this.mainView,null==i||i.close(),this._infoView.init(),t.unsubscribe()})},1e3);const n=()=>_t(this,void 0,void 0,function*(){var e;Oe(this,e=>_t(this,void 0,void 0,function*(){var n,o,a,s,r,d,u,p,m,h;const v=this.template.compute.descriptors.args,f=this.template.compute.functions,g=null!==(n=this.template.compute.scripts)&&void 0!==n?n:[],y=null!==(o=this.template.compute.queries)&&void 0!==o?o:[],A=e.descriptors,w={descriptors:{enabled:!!(null===(a=null==e?void 0:e.descriptors)||void 0===a?void 0:a.length),args:null!==(s=null==e?void 0:e.descriptors)&&void 0!==s?s:[]},functions:Object.entries(null!==(r=null==e?void 0:e.externals)&&void 0!==r?r:{}).map(([e,t])=>{const i=e.split(":");return{name:i[1],package:i[0],args:t}}),scripts:Object.entries(null!==(d=null==e?void 0:e.scripts)&&void 0!==d?d:{}).filter(([e,t])=>e.startsWith(l)&&3===e.split(":").length).map(([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}}),queries:Object.entries(null!==(u=null==e?void 0:e.queries)&&void 0!==u?u:{}).filter(([e,t])=>e.startsWith(c)&&3===e.split(":").length).map(([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}})};this.template.compute=w,this.campaign.template=this.template;const b=A.filter(e=>!v.includes(e)),C={};Object.entries(null!==(p=null==e?void 0:e.externals)&&void 0!==p?p:{}).filter(([e,t])=>{const i=f.find(t=>`${t.package}:${t.name}`===e);return!i||!Object.entries(t).every(([e,t])=>i.args[e]===t)}).forEach(([e,t])=>{C[e]=t});const E={};Object.entries(null!==(m=null==e?void 0:e.scripts)&&void 0!==m?m:{}).filter(([e,t])=>{const i=g.find(t=>`${l}:${t.name}:${t.id}`===e);return!i||!Object.entries(t).every(([e,t])=>i.args[e]===t)}).forEach(([e,t])=>{E[e]=t});const T={};Object.entries(null!==(h=null==e?void 0:e.queries)&&void 0!==h?h:{}).filter(([e,t])=>{const i=y.find(t=>`${c}:${t.name}:${t.id}`===e);return!i||!Object.entries(t).every(([e,t])=>i.args[e]===t)}).forEach(([e,t])=>{T[e]=t}),t.setUpdateIndicator(i.grid.root,!0);try{yield ct({descriptors:b,externals:C,scripts:E,queries:T},this.dataFrame,this.molColName),this.dataFrame.fireValuesChanged()}finally{t.setUpdateIndicator(i.grid.root,!1),this.saveCampaign(!1)}}),()=>null,null===(e=this.campaign)||void 0===e?void 0:e.template,!0)}),u=t.iconFA("wrench",n,"Calculate additional properties"),m=t.icons.add(()=>{var e;null===(e=this.dataFrame)||void 0===e||e.rows.addNew(null,!0)},"Add new row"),h=t.iconSvg("view-layout",()=>{this.applyTemplateLayout(i)},"Apply template layout "+((null===(s=this.template)||void 0===s?void 0:s.localLayoutPath)?"(Loaded from mounted file storage)":"(Static)"));this._refreshCampaignIcon=t.icons.sync(()=>_t(this,void 0,void 0,function*(){this.refreshCampaign()})),t.tooltip.bind(this._refreshCampaignIcon,()=>this._refreshIconTooltip);const v=t.iconFA("share",()=>_t(this,void 0,void 0,function*(){var e;yield new Qe(null===(e=this.campaign)||void 0===e?void 0:e.permissions).show(e=>{this.campaign.permissions=e,this.saveCampaign(!0)})}),"Edit campaign permissions"),f=t.bigButton("Progress tracker",()=>{bt(this,()=>{var e;return null!==(e=this._designView)&&void 0!==e?e:null})}),g=t.bigButton("Submit...",()=>{var e;null===(e=this._submitView)||void 0===e||e.render()}),y=o.Func.find({meta:{role:"HitDesignerFunction"}}).filter(e=>1===e.outputs.length&&e.outputs[0].propertyType===o.TYPE.DATA_FRAME);g.classList.add("hit-design-submit-button");const A=[g];if(this.stages.length>0&&A.unshift(f),this.campaign&&this.template&&!this.campaign.template&&(this.campaign.template=this.template),((null===(r=this.template)||void 0===r?void 0:r.layoutViewState)||(null===(d=this.template)||void 0===d?void 0:d.localLayoutPath))&&A.unshift(h),this.hasEditPermission&&A.unshift(v),y.length>0&&a){const i=y[0],n=t.iconFA("pen-nib",()=>_t(this,void 0,void 0,function*(){var n;const a={};if(i.inputs.length>0&&this.dataFrame&&this.dataFrame.currentRowIdx>=0&&i.inputs[0].semType===o.SEMTYPE.MOLECULE){const e=mi.convertToSmiles(null===(n=this.dataFrame.col(this.molColName))||void 0===n?void 0:n.get(this.dataFrame.currentRowIdx));e&&(a[i.inputs[0].name]=e)}const s=i.prepare(a),r=yield s.getEditor();t.dialog(i.friendlyName).add(r).onOK(()=>_t(this,void 0,void 0,function*(){const t=o.TaskBarProgressIndicator.create(`Running ${i.friendlyName}`);try{yield s.call();const n=s.getOutputParamValue();if(!n||!n.rowCount)return e.shell.warning(`${i.friendlyName} returned an empty result`),void t.close();yield n.meta.detectSemanticTypes(),yield e.data.detectSemanticTypes(n),yield this.handleJoiningDataframe(n)}catch(t){e.shell.error(`Failed to run ${i.friendlyName}`),mi.logger.error(t)}finally{t.close()}})).show()}),i.description?i.description:i.friendlyName);A.unshift(n)}A.unshift(u),A.unshift(m),A.unshift(this._refreshCampaignIcon),p.push(A),p.some(e=>{var t;const i=null!==(t=null==e?void 0:e.findIndex(e=>{var t;return"save"===(null===(t=null==e?void 0:e.textContent)||void 0===t?void 0:t.toLowerCase())}))&&void 0!==t?t:-1;return-1!==i&&(e.splice(i,1),!0)}),p=p.filter(e=>{var t;return(null!==(t=null==e?void 0:e.length)&&void 0!==t?t:0)>0}),i.setRibbonPanels(p)}return i}applyTemplateLayout(t){return _t(this,void 0,void 0,function*(){var i,n;if(t){if(null===(i=this.template)||void 0===i?void 0:i.localLayoutPath)try{const i=yield e.dapi.files.readAsText(this.template.localLayoutPath),n=o.ViewLayout.fromJson(i);return void t.loadLayout(n)}catch(t){e.shell.error("Failed to apply layout from mounted file storage. Falling back to static layout"),mi.logger.error(t)}if(null===(n=this.template)||void 0===n?void 0:n.layoutViewState)try{const e=o.ViewLayout.fromViewState(this.template.layoutViewState);t.loadLayout(e)}catch(t){e.shell.error("Failed to apply template layout. Check console for more details."),mi.logger.error(t)}else e.shell.error("No layout found")}else e.shell.error("No view found")})}getDesignView(){var t,i,n,a,s,r,l;this._designView&&this._designView.close();const c=[],d=null===(t=this.dataFrame.col(this.molColName))||void 0===t?void 0:t.toList().every(e=>!e&&""===e),u=e.shell.addTableView(this.dataFrame);this._designViewName=null!==(s=null!==(n=null===(i=this.campaign)||void 0===i?void 0:i.friendlyName)&&void 0!==n?n:null===(a=this.campaign)||void 0===a?void 0:a.name)&&void 0!==s?s:this._designViewName,u.name=this._designViewName,u._onAdded();const p=null===(r=this._campaign)||void 0===r?void 0:r.layout;if(p)try{const e=o.ViewLayout.fromViewState(p);u.loadLayout(e)}catch(t){e.shell.error("Failed to apply layout. Falling back to default layout."),console.error(t)}this.checkGrid(u),d&&e.functions.call("Chem:editMoleculeCell",{cell:u.grid.cell(this._molColName,0)}),this.initGridSubs(u,c);const m=null===(l=u.grid)||void 0===l?void 0:l.col(b);m&&(m.editable=!1);const h=this.dataFrame.col(b);return h&&(h.semType=C,h.valueComparer=(e,t)=>e===t?0:null===e?-1:null===t?1:parseInt(e.substring(1))-parseInt(t.substring(1))),c.push(this.dataFrame.onRowsAdded.pipe((0,Ct.filter)(()=>!this.isJoining)).subscribe(()=>{var t;try{if(this.stages.length>0)for(let e=0;e<this.dataFrame.rowCount;e++){const i=this.dataFrame.col(y).get(e);i&&""!==i&&!(null===(t=this.dataFrame.col(y))||void 0===t?void 0:t.isNone(e))||this.dataFrame.set(y,e,this.stages[0])}let i=null;for(let e=0;e<this.dataFrame.rowCount;e++){const t=u.grid.cell(this.molColName,e);t&&(""!==t.cell.value&&null!==t.cell.value||(i=t))}i&&e.functions.call("Chem:editMoleculeCell",{cell:i})}catch(e){console.error(e)}})),c.push(e.events.onContextMenu.subscribe(t=>{var i,n,a,s,r,l,c,d,p,m,h,v;try{const e=null===(i=null==t?void 0:t.args)||void 0===i?void 0:i.context;if(!e)return;if((null==e?void 0:e.type)!==o.VIEWER.GRID)return;if(!e.tableView||e.tableView.id!==u.id)return;if((null===(s=null===(a=null===(n=null==t?void 0:t.args)||void 0===n?void 0:n.item)||void 0===a?void 0:a.tableColumn)||void 0===s?void 0:s.name)!==this.molColName||!(null===(l=null===(r=null==t?void 0:t.args)||void 0===r?void 0:r.item)||void 0===l?void 0:l.isTableCell))return;const f=null===(c=null==t?void 0:t.args)||void 0===c?void 0:c.menu;if(!f)return;f.item("Add new row",()=>{this.dataFrame.rows.addNew(null,!0)}),f.item("Duplicate molecule",()=>{var e,i,n,o;try{const a=this.dataFrame.rows.addNew(null,!0);null!=a.get(this.molColName)&&a.idx>-1&&(this.dataFrame.cell(a.idx,this.molColName).value=null!==(o=null===(n=null===(i=null===(e=null==t?void 0:t.args)||void 0===e?void 0:e.item)||void 0===i?void 0:i.cell)||void 0===n?void 0:n.value)&&void 0!==o?o:"")}catch(e){console.error(e)}});const g=null===(p=null===(d=null==t?void 0:t.args)||void 0===d?void 0:d.item)||void 0===p?void 0:p.tableRowIndex,y=null===(v=null===(h=null===(m=null==t?void 0:t.args)||void 0===m?void 0:m.item)||void 0===h?void 0:h.cell)||void 0===v?void 0:v.value;y&&(null!=g?g:-1)>-1&&f.item("Re-Run Calculations",()=>_t(this,void 0,void 0,function*(){try{yield this.performSingleCellCalculations(g,y)}catch(e){console.error(e)}}))}catch(t){e.log.error(t)}})),c.push(e.events.onViewLayoutApplied.subscribe(e=>{e&&e.view===u&&this.initGridSubs(u,c)})),this.initDesignViewRibbons(u,c,!0),u.parentCall=this.parentCall,u}checkGrid(t){t.grid||(e.shell.error("Applied layout created view without grid. Resetting layout."),t.resetLayout())}initGridSubs(t,i){this._gridSubs&&this._gridSubs.grid===t.grid||(this._gridSubs&&this._gridSubs.subs.forEach(e=>e.unsubscribe()),this.checkGrid(t),t.grid?(this._gridSubs={grid:t.grid,subs:[]},(null==t?void 0:t.grid)&&this._gridSubs.subs.push(t.grid.onCellValueEdited.subscribe(t=>_t(this,void 0,void 0,function*(){var i,n;try{if((null===(i=t.tableColumn)||void 0===i?void 0:i.name)===y)return void(yield this.saveCampaign(!1));if((null===(n=t.tableColumn)||void 0===n?void 0:n.name)!==this.molColName)return;const e=t.cell.value,o=t.tableRowIndex;if(e)try{const t=yield Ft(e,this._campaignId,this.appName);this.dataFrame.col(b).set(o,t,!0)}catch(e){console.error("Failed to register molecule")}yield this.performSingleCellCalculations(o,e)}catch(t){e.shell.error("Failed to process molecule edit, check console for details"),console.error(t)}}))),(null==t?void 0:t.grid)&&this._gridSubs.subs.push(t.grid.onCellRender.subscribe(e=>{var t;try{const i=e.cell,n=this.duplicateVidCache;if(!i||!i.isTableCell||!i.tableColumn||!n||i.tableColumn.name!==b||(null!==(t=i.tableRowIndex)&&void 0!==t?t:-1)<0)return;n.valueCounts[n.indexes[i.tableRowIndex]]>1&&(e.cell.style.backColor=o.Color.setAlpha(o.Color.getCategoricalColor(n.indexes[i.tableRowIndex]),150))}catch(e){}})),this._gridSubs.subs.forEach(e=>i.push(e))):e.shell.error("No grid found, cannot initialize grid subscriptions"))}getSummary(){var i,n,a,s,r,l,c,d,u,p,h,v,f;const g=()=>{var e,t;const i=this._filePath.indexOf(null!==(e=this.campaignId)&&void 0!==e?e:null===(t=this._campaign)||void 0===t?void 0:t.name);return-1===i?this._filePath:this._filePath.substring(0,i-1)},y=Object.assign({},null!==(n=null===(i=this.campaign)||void 0===i?void 0:i.campaignFields)&&void 0!==n?n:this.campaignProps);this.template&&this.template.campaignFields&&Object.entries(y).forEach(([t,i])=>{const n=this.template.campaignFields.find(e=>e.name===t);n&&"Date"===n.type&&i?"Invalid Date"!==new Date(i).toString()?y[t]=new Date(i).toLocaleDateString():i.date?y[t]=new Date(i.date).toLocaleDateString():y[t]=i:n&&n.type===o.SEMTYPE.MOLECULE&&i&&(y[t]=e.chem.drawMolecule(i))});const A=null!==(l=null!==(s=null===(a=this.campaign)||void 0===a?void 0:a.friendlyName)&&void 0!==s?s:null===(r=this.campaign)||void 0===r?void 0:r.name)&&void 0!==l?l:this.campaignId,w=function(i,n){var o;const a=t.icons.edit(()=>{var o,r,l,c,d;let u=null!==(r=null!==(o=null==n?void 0:n.tooltip)&&void 0!==o?o:i.textContent)&&void 0!==r?r:"";const p=null!==(l=null==n?void 0:n.beforeEditTextContent)&&void 0!==l?l:e=>e,m=null!==(c=null==n?void 0:n.afterEditTextContent)&&void 0!==c?c:e=>e,h=t.input.string("smth",{value:p(null!==(d=i.textContent)&&void 0!==d?d:""),onValueChanged:()=>ae(this,void 0,void 0,function*(){var e;const t=yield f();setTimeout(()=>{var e,o;if(t)return h.input.classList.add("d4-invalid"),void(u=t);h.input.classList.remove("d4-invalid"),u=null!==(o=null!==(e=null==n?void 0:n.tooltip)&&void 0!==e?e:i.textContent)&&void 0!==o?o:""},100),null===(e=null==n?void 0:n.onChange)||void 0===e||e.call(n,h.value)})});t.tooltip.bind(h.input,()=>u);const v=h.root.getElementsByTagName("label").item(0);v&&v.remove(),h.root.style.width="100%";const f=()=>ae(this,void 0,void 0,function*(){var e;const t=(null===(e=h.value)||void 0===e?void 0:e.trim())||(null==n?void 0:n.nullable)?null:"Field cannot be empty";return null!=t?t:(null==n?void 0:n.validator)?yield n.validator(h.value):null}),g=t.button("Save",()=>ae(this,void 0,void 0,function*(){var o,r;const l=yield f();l?e.shell.error(l):(yield null===(o=null==n?void 0:n.onOk)||void 0===o?void 0:o.call(n,h.value),i.textContent=null!==(r=m(h.value))&&void 0!==r?r:"",t.empty(s),s.appendChild(i),s.appendChild(a))})),y=t.button("Cancel",()=>{var e;t.empty(s),s.appendChild(i),s.appendChild(a),null===(e=null==n?void 0:n.onCancel)||void 0===e||e.call(n)});t.empty(s),h.addOptions(y),h.addOptions(g),s.appendChild(h.root),h.input.focus()},null!==(o=null==n?void 0:n.tooltip)&&void 0!==o?o:"Edit"),s=t.divH([i,a],{style:{display:"flex",alignItems:"center"}});return a.style.marginLeft="5px",s}(t.divText(A),{tooltip:"Edit Campaign Name",nullable:!1,onOk:e=>_t(this,void 0,void 0,function*(){this.campaign.friendlyName=e,yield this.saveCampaign(!0)}),validator:e=>_t(this,void 0,void 0,function*(){return(null==e?void 0:e.trim())?null:"Campaign name can not be empty"})});return Object.assign(Object.assign(Object.assign(Object.assign(Object.assign({Name:w,Code:null!==(c=this.campaignId)&&void 0!==c?c:null===(d=this._campaign)||void 0===d?void 0:d.name,Template:null!==(p=null===(u=this.template)||void 0===u?void 0:u.name)&&void 0!==p?p:"Molecules","File Path":(()=>{const i=t.icons.edit(()=>{const n=g(),s=t.input.string("Path",{value:n}),r=s.root.getElementsByTagName("label").item(0);r&&r.remove(),s.root.style.width="100%";const l=t.button("Save",()=>_t(this,void 0,void 0,function*(){if(!(yield function(t){return ae(this,void 0,void 0,function*(){return t&&""!==t.trim()?!!(yield e.dapi.files.exists(t))||(e.shell.error("Given folder does not exist"),!1):(e.shell.error("Path can not be empty"),!1)})}(s.value)))return;const n=s.value;n.endsWith("/")?this._filePath=`${n}${this.campaignId}/${m}`:this._filePath=`${n}/${this.campaignId}/${m}`,this._campaign&&(this._campaign.savePath=this._filePath),yield this.saveCampaign(!0),t.empty(a);const r=g();o=t.link(r,()=>{var e,t,i;return this.download(this.dataFrame,null!==(i=null!==(e=this.campaignId)&&void 0!==e?e:null===(t=this._campaign)||void 0===t?void 0:t.name)&&void 0!==i?i:"Molecules")},N),a.appendChild(o),a.appendChild(i)})),c=t.button("Cancel",()=>{t.empty(a),a.appendChild(o),a.appendChild(i)});t.empty(a),s.addOptions(c),s.addOptions(l),a.appendChild(s.root),s.input.focus()},"Edit file path");i.style.marginLeft="5px";const n=g();let o=t.link(n,()=>{var e,t,i;return this.download(this.dataFrame,null!==(i=null!==(e=this.campaignId)&&void 0!==e?e:null===(t=this._campaign)||void 0===t?void 0:t.name)&&void 0!==i?i:"Molecules")},N);const a=t.divH([o,i],{style:{alignItems:"center"}});return a})()},(null===(h=this.campaign)||void 0===h?void 0:h.authorUserFriendlyName)?{Author:this.campaign.authorUserFriendlyName}:{}),(null===(v=this.campaign)||void 0===v?void 0:v.lastModifiedUserName)?{"Last Modified By":this.campaign.lastModifiedUserName}:{}),(null===(f=this.campaign)||void 0===f?void 0:f.createDate)?{"Create Date":this.campaign.createDate}:{}),y),{"Number of Molecules":this.dataFrame.rowCount.toString(),"Enrichment Methods":[this.template.compute.descriptors.enabled?"descriptors":"",...this.template.compute.functions.map(e=>e.name)].filter(e=>e&&""!==e.trim()).join(", ")})}saveCampaign(){return _t(this,arguments,void 0,function*(i=!0,n=!1,a){var s,r,l,c,d,u,p,m,v,f,g,y,A,w,b,C,E,T,x,S,N,B,I,F,P;this._isSaving=!0;const _=this.campaignId,k=setTimeout(()=>{var e;(null===(e=this._designView)||void 0===e?void 0:e.grid)&&t.setUpdateIndicator(this._designView.grid.root,!0,"Someone else is saving the campaign. Please wait...")},500);try{const e=yield this.aquireAndWaitCampaignLock(_);if(!(null==e?void 0:e.aquired))throw new Error("Could not acquire lock for campaign during 30 seconds")}catch(i){return clearTimeout(k),(null===(s=this._designView)||void 0===s?void 0:s.grid)&&t.setUpdateIndicator(this._designView.grid.root,!1),e.shell.error("Failed to acquire campaign lock. Someone else might be editing the campaign. Please try again later."),this._isSaving=!1,this.campaign}clearTimeout(k),(null===(r=this._designView)||void 0===r?void 0:r.grid)&&t.setUpdateIndicator(this._designView.grid.root,!0,"Saving Campaign...");const V=this.template.name,L=this.dataFrame,O=_,D={};L.columns.toList().forEach(e=>D[e.name]=e.semType);const $={};L.columns.toList().forEach(e=>$[e.name]=e.type);const M=null!==(c=null===(l=this.campaign)||void 0===l?void 0:l.tilesViewerFormSketch)&&void 0!==c?c:void 0,R=null!==(u=null===(d=this.campaign)||void 0===d?void 0:d.authorUserId)&&void 0!==u?u:e.shell.user.id,j=null!==(m=null===(p=this.campaign)||void 0===p?void 0:p.permissions)&&void 0!==m?m:yield(()=>_t(this,void 0,void 0,function*(){try{const e=yield function(){return Et(this,void 0,void 0,function*(){var e,t,i,n,o;try{const a=null!==(e=mi.settings)&&void 0!==e?e:yield mi.getSettings(),s={view:[],edit:[]};return a?(a instanceof Map?(s.view=yield St(null!==(t=a.get("view"))&&void 0!==t?t:""),s.edit=yield St(null!==(i=a.get("edit"))&&void 0!==i?i:"")):(s.view=yield St(null!==(n=a.view)&&void 0!==n?n:""),s.edit=yield St(null!==(o=a.edit)&&void 0!==o?o:"")),s):s}catch(e){return console.error(e),{view:[],edit:[]}}})}(),t={view:e.view.map(e=>e.id),edit:e.edit.map(e=>e.id)};return 0===t.edit.length&&(t.edit=[Je.edit[0]]),0===t.view.length&&(t.view=[Je.view[0]]),t}catch(t){e.shell.error("Failed to get default permissions"),console.error(t)}return Je}))(),U=R?null!==(f=null===(v=this.campaign)||void 0===v?void 0:v.authorUserFriendlyName)&&void 0!==f?f:null===(g=yield e.dapi.users.find(R))||void 0===g?void 0:g.friendlyName:void 0,H={name:O,friendlyName:null!==(w=null!==(A=null===(y=this.campaign)||void 0===y?void 0:y.friendlyName)&&void 0!==A?A:null==a?void 0:a.friendlyName)&&void 0!==w?w:O,templateName:V,status:null!==(C=null===(b=this.campaign)||void 0===b?void 0:b.status)&&void 0!==C?C:"In Progress",createDate:null!==(T=null===(E=this.campaign)||void 0===E?void 0:E.createDate)&&void 0!==T?T:se(new Date),campaignFields:null!==(S=null===(x=this.campaign)||void 0===x?void 0:x.campaignFields)&&void 0!==S?S:this.campaignProps,columnSemTypes:D,rowCount:L.rowCount,filteredRowCount:L.filter.trueCount,savePath:this._filePath,columnTypes:$,tilesViewerFormSketch:M,version:this.version+1,authorUserId:R,authorUserFriendlyName:U,lastModifiedUserName:e.shell.user.friendlyName,permissions:j};if(!this.hasEditPermission)return e.shell.error("You do not have permission to modify this campaign"),(null===(N=this._designView)||void 0===N?void 0:N.grid)&&t.setUpdateIndicator(this._designView.grid.root,!1),yield this.releaseCampaignLock(_),this._isSaving=!1,H;const q=`${this.appName}/campaigns/${_}/${h}`;let Y=L;if(yield mi.files.exists(q)){const t=JSON.parse(yield mi.files.readAsText(q));if((null!==(B=t.version)&&void 0!==B?B:0)>this.version&&(H.version=Math.max(this.version,null!==(I=t.version)&&void 0!==I?I:0)+1,yield e.dapi.files.exists(this._filePath)))try{const t=yield e.dapi.files.readCsv(this._filePath);Y=this.unionDataframes(t,L,this.molColName,this.molColName)}catch(e){console.error(e)}}const G=o.DataFrame.fromColumns(Y.columns.toList().filter(e=>!e.name.startsWith("~"))).toCsv();yield e.dapi.files.writeAsText(this._filePath,G);const W=this._designView.saveLayout();W?H.layout=W.viewState:e.shell.warning("Layout cound not be saved"),H.template=this.template,yield mi.saveCampaignJson(this.appName,H),i&&e.shell.info("Campaign saved successfully."),!i&&n&&e.shell.info("Campaign created successfully."),this.campaign=H,this.designViewName=null!==(F=H.friendlyName)&&void 0!==F?F:H.name;const z=yield this.releaseCampaignLock(_);return this._lastExpiresTimeString=z,(null===(P=this._designView)||void 0===P?void 0:P.grid)&&t.setUpdateIndicator(this._designView.grid.root,!1),this._isSaving=!1,this._refreshIconTooltip="Refresh Campaign",H})}}class Vt extends o.GridCellRenderer{get name(){return"customGasteigerPNG"}get cellType(){return"customGasteigerPNG"}get defaultHeight(){return 200}get defaultWidth(){return 200}render(e,t,i,n,o,a,s){if(a.gridRow<0||!a.cell.value)return;const r=a.cell.value,l=new Image(n-2,o-2);l.src="data:image/png;base64,"+r,l.onload=function(){e.drawImage(l,t+2,i+2,n-2,o-2)}}}var Lt=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(s,r)}l((n=n.apply(e,t||[])).next())})};class Ot extends gt{constructor(t){super(t),this.name="PeptiHit",e.shell.windows.showHelp=!0,e.shell.windows.help.showHelp(mi.webRoot+"README_HD.md")}getNewCampaignAccordeon(e){return Lt(this,void 0,void 0,function*(){const{root:t,promise:i,cancelPromise:n}=pt(e,!0);return i.then(t=>Lt(this,void 0,void 0,function*(){this.app.dataFrame=t.df,yield this.app.setTemplate(e),this.app.campaignProps=t.campaignProps,yield this.app.saveCampaign(!1),e.layoutViewState&&this.app.campaign&&(this.app.campaign.layout=e.layoutViewState)})),n.then(()=>{this.init()}),t})}getAppHeader(){return We.appHeader({iconPath:mi.webRoot+"/images/icons/pepti-hit-icon.png",learnMoreUrl:"https://github.com/datagrok-ai/public/blob/master/packages/HitTriage/README_HD.md",description:"-  Configure your own workflow using the template editor\n-  Sketch Helm sequences in the spreadsheet\n-  Annotate and share ideas with the team\n-  Convert to molecular form and calculate different properties\n-  Save campaigns and continue from where you left off\n-  Submit final selection to the function of your choice"})}}var Dt=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(s,r)}l((n=n.apply(e,t||[])).next())})};class $t extends kt{constructor(e){super(e,"PeptiHit",e=>new Ot(e)),this._helmColName=w}setTemplate(e,t){const i=Object.create(null,{setTemplate:{get:()=>super.setTemplate}});return Dt(this,void 0,void 0,function*(){var n,a;yield i.setTemplate.call(this,e,t),this._helmColName=null!==(a=null===(n=this.dataFrame.columns.bySemType(o.SEMTYPE.MACROMOLECULE))||void 0===n?void 0:n.name)&&void 0!==a?a:w})}get helmColName(){var e,t;return null!==(e=this._helmColName)&&void 0!==e?e:null===(t=this.dataFrame.columns.bySemType(o.SEMTYPE.MACROMOLECULE))||void 0===t?void 0:t.name}performSingleCellCalculations(t,i){const n=Object.create(null,{performSingleCellCalculations:{get:()=>super.performSingleCellCalculations}});return Dt(this,void 0,void 0,function*(){var a;try{if(!i)throw new Error("No cell value provided");const s=o.Column.fromStrings(this.helmColName,[i]),r=o.DataFrame.fromColumns([s]);s.semType=o.SEMTYPE.MACROMOLECULE,s.setTag("units","helm"),s.setTag(".alphabetIsMultichar","true"),yield e.functions.call("Bio:toAtomicLevel",{table:r,seqCol:s,nonlinear:!0});const l=r.columns.names().find(e=>e.toLowerCase()!==this.helmColName.toLowerCase()),c=l?null===(a=r.col(l))||void 0===a?void 0:a.get(0):null;if(!c)throw new Error("Failed to convert sequence to atomic level");this.dataFrame.set(this.molColName,t,c),yield n.performSingleCellCalculations.call(this,t,c)}catch(e){console.error(e)}})}getDesignView(){var t,i,n,a,s,r,l;const c=[],d=null===(t=this.dataFrame.col(this.helmColName))||void 0===t?void 0:t.toList().every(e=>!e&&""===e),u=this.dataFrame.col(this.helmColName);if(!u)throw new Error("No helm column found");u.semType=o.SEMTYPE.MACROMOLECULE,u.setTag("units","helm"),u.setTag(".alphabetIsMultichar","true"),u.setTag("cell.renderer","helm");const p=e.shell.addTableView(this.dataFrame);this._designViewName=null!==(n=null===(i=this.campaign)||void 0===i?void 0:i.name)&&void 0!==n?n:this._designViewName,p.name=this._designViewName,p._onAdded();const m=null!==(s=null===(a=this._campaign)||void 0===a?void 0:a.layout)&&void 0!==s?s:null===(r=this.template)||void 0===r?void 0:r.layoutViewState;if(m)try{const e=o.ViewLayout.fromViewState(m);p.loadLayout(e)}catch(t){e.shell.error("Failed to apply layout. Falling back to default layout."),console.error(t)}const h=null===(l=p.grid)||void 0===l?void 0:l.col(b);h&&(h.editable=!1);const v=this.dataFrame.col(b);return v&&(v.semType=C,v.valueComparer=(e,t)=>e===t?0:null===e?-1:null===t?1:parseInt(e.substring(1))-parseInt(t.substring(1))),d&&e.functions.call("Helm:editMoleculeCell",{cell:p.grid.cell(this.helmColName,0)}),c.push(this.dataFrame.onRowsAdded.pipe((0,Ct.filter)(()=>!this.isJoining)).subscribe(()=>{var t;try{if(this.stages.length>0)for(let e=0;e<this.dataFrame.rowCount;e++){const i=this.dataFrame.col(y).get(e);i&&""!==i&&!(null===(t=this.dataFrame.col(y))||void 0===t?void 0:t.isNone(e))||this.dataFrame.set(y,e,this.stages[0])}let i=null;for(let e=0;e<this.dataFrame.rowCount;e++){const t=p.grid.cell(this.helmColName,e);t&&(""!==t.cell.value&&null!==t.cell.value||(i=t))}i&&e.functions.call("Helm:editMoleculeCell",{cell:i})}catch(e){console.error(e)}})),c.push(e.events.onContextMenu.subscribe(t=>{var i,n,a,s,r,l,c,d,u,m,h,v;try{const e=null===(i=null==t?void 0:t.args)||void 0===i?void 0:i.context;if(!e)return;if((null==e?void 0:e.type)!==o.VIEWER.GRID)return;if(!e.tableView||e.tableView.id!==p.id)return;if((null===(s=null===(a=null===(n=null==t?void 0:t.args)||void 0===n?void 0:n.item)||void 0===a?void 0:a.tableColumn)||void 0===s?void 0:s.name)!==this.helmColName||!(null===(l=null===(r=null==t?void 0:t.args)||void 0===r?void 0:r.item)||void 0===l?void 0:l.isTableCell))return;const f=null===(c=null==t?void 0:t.args)||void 0===c?void 0:c.menu;if(!f)return;f.item("Add new row",()=>{this.dataFrame.rows.addNew(null,!0)}),f.item("Duplicate Sequence",()=>{var e,i,n,o;try{const a=this.dataFrame.rows.addNew(null,!0);null!=a.get(this.helmColName)&&a.idx>-1&&(this.dataFrame.cell(a.idx,this.helmColName).value=null!==(o=null===(n=null===(i=null===(e=null==t?void 0:t.args)||void 0===e?void 0:e.item)||void 0===i?void 0:i.cell)||void 0===n?void 0:n.value)&&void 0!==o?o:"")}catch(e){console.error(e)}});const g=null===(u=null===(d=null==t?void 0:t.args)||void 0===d?void 0:d.item)||void 0===u?void 0:u.tableRowIndex,y=null===(v=null===(h=null===(m=null==t?void 0:t.args)||void 0===m?void 0:m.item)||void 0===h?void 0:h.cell)||void 0===v?void 0:v.value;y&&(null!=g?g:-1)>-1&&f.item("Re-Run Calculations",()=>Dt(this,void 0,void 0,function*(){try{yield this.performSingleCellCalculations(g,y)}catch(e){console.error(e)}}))}catch(t){e.log.error(t)}})),(null==p?void 0:p.grid)||(e.shell.error("Applied layout created view without grid. Resetting layout."),p.resetLayout()),(null==p?void 0:p.grid)&&c.push(p.grid.onCellValueEdited.subscribe(t=>Dt(this,void 0,void 0,function*(){var i,n;try{if((null===(i=t.tableColumn)||void 0===i?void 0:i.name)===y)return void(yield this.saveCampaign(!1));if((null===(n=t.tableColumn)||void 0===n?void 0:n.name)!==this.helmColName)return;const e=t.cell.value,o=t.tableRowIndex;yield this.performSingleCellCalculations(o,e);try{const e=this.dataFrame.col(this.molColName).get(o),t=yield Ft(null!=e?e:"",this.campaignId,this.appName);t&&this.dataFrame.col(b).set(o,t,!0)}catch(e){console.error("Error updating V-iD column:",e)}}catch(t){e.shell.error("Error performing cell calculations: "+t),console.error(t)}}))),(null==p?void 0:p.grid)&&c.push(p.grid.onCellRender.subscribe(e=>{var t;try{const i=this.duplicateVidCache,n=e.cell;if(!n||!n.isTableCell||!n.tableColumn||!i||n.tableColumn.name!==b||(null!==(t=n.tableRowIndex)&&void 0!==t?t:-1)<0)return;i.valueCounts[i.indexes[n.tableRowIndex]]>1&&(e.cell.style.backColor=o.Color.setAlpha(o.Color.getCategoricalColor(i.indexes[n.tableRowIndex]),150))}catch(e){}})),this.initDesignViewRibbons(p,c),p.parentCall=this.parentCall,p}}var Mt=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(s,r)}l((n=n.apply(e,t||[])).next())})};var Rt=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(s,r)}l((n=n.apply(e,t||[])).next())})};class jt extends Ze{constructor(t){super(t),this.pepTriageDataSourceFunctionsMap={},this.name="PepTriage",e.shell.windows.showHelp=!0,e.shell.windows.help.showHelp(mi.webRoot+"README_HT.md")}onActivated(){e.shell.windows.showHelp=!0,e.shell.windows.help.showHelp(mi.webRoot+"README_HT.md")}getAppHeader(){return We.appHeader({iconPath:mi.webRoot+"/images/icons/hit-triage-icon.png",learnMoreUrl:"https://github.com/datagrok-ai/public/blob/master/packages/HitTriage/README_HT.md",description:"-  Configure your own workflow using the template editor\n-  Load sequence datasets and auto-convert to molecules\n-  Calculate different molecular properties\n-  Filter sequences using different criteria\n-  Save campaigns and continue any time from where you left off\n-  Submit final selection to the function of your choice"})}getTemplatesFolder(){return`${this.app.appName}/templates`}getDataSourceTag(){return j}getDataSourceFunctionsMap(){return this.pepTriageDataSourceFunctionsMap}getNewCampaignAccordeon(e,i){return Rt(this,void 0,void 0,function*(){var n,o;const a=e,s=t.input.string("Sequence Column",{value:null!==(n=a.sequenceColumnName)&&void 0!==n?n:"",nullable:!1});s.setTooltip("Name of the sequence column in the dataset");const r=t.input.string("Molecule Column",{value:null!==(o=a.moleculeColumnName)&&void 0!==o?o:"",nullable:!0});r.setTooltip("Name of the molecule column (leave empty to auto-convert from sequences)"),t.setUpdateIndicator(i,!0);const{root:l,promise:c,cancelPromise:d}=yield Fe(e,this.getDataSourceFunctionsMap(),this.getDataSourceTag(),{extraFormElements:[s.root,r.root],getExtraData:()=>{var e,t;return{sequenceColumnName:(null===(e=s.value)||void 0===e?void 0:e.trim())||a.sequenceColumnName,moleculeColumnName:(null===(t=r.value)||void 0===t?void 0:t.trim())||void 0}}});return t.setUpdateIndicator(i,!1),c.then(e=>Rt(this,void 0,void 0,function*(){var t,i,n,o;const s=Object.assign(Object.assign({},a),{sequenceColumnName:null!==(i=null===(t=e.extraData)||void 0===t?void 0:t.sequenceColumnName)&&void 0!==i?i:a.sequenceColumnName,moleculeColumnName:null!==(o=null===(n=e.extraData)||void 0===n?void 0:n.moleculeColumnName)&&void 0!==o?o:a.moleculeColumnName});this.app.dataFrame=e.df,this.app._fileInputType=e.type,yield this.app.setTemplate(s,void 0,void 0,void 0,e.friendlyName),this.app.campaignProps=e.campaignProps,yield this.app.saveCampaign(void 0,!1),s.layoutViewState&&this.app.campaign&&(this.app.campaign.layout=s.layoutViewState)})),d.then(()=>{this.init()}),l})}createNewTemplate(i){return Rt(this,void 0,void 0,function*(){const n=yield function(i,n,a){return Mt(this,void 0,void 0,function*(){var s,r,d,u,p;const m=`${i.appName}/templates`,h=(yield mi.files.list(m)).filter(e=>e.name.endsWith(".json")).map(e=>e.name.slice(0,-5)),v=[];for(const e of h){const t=yield Ne(`${m}/${e}.json`);v.push(t.key)}const g=Array.from(new Set(o.Func.find({meta:{role:f}}).concat(o.Func.find({tags:[f]})))),y={};g.forEach(e=>{var t;y[null!==(t=e.friendlyName)&&void 0!==t?t:e.name]=e});const A=(null==a?void 0:a.submit)?Object.keys(y).find(e=>{var t,i;return(null===(t=y[e])||void 0===t?void 0:t.name)===(null===(i=a.submit)||void 0===i?void 0:i.fName)}):null,w=t.input.choice("Submit function",{value:null!=A?A:null,items:[null,...Object.keys(y)]});A||(w.value=null),w.nullable=!0,w.fireChanged(),w.setTooltip("Select function to be called upon submitting");const b=Me(),C=t.divText("Template name is empty or already exists",{classes:"hit-triage-error-div"}),T=t.divText("Template key is empty or already exists",{classes:"hit-triage-error-div"}),x=t.input.string("Name",{value:a?`${a.name} (copy)`:"",onValueChanged:e=>{""===e||h.includes(e)?(x.root.style.borderBottom="1px solid red",C.style.opacity="100%"):(x.root.style.borderBottom="none",C.style.opacity="0%")}}),N=t.input.string("Key",{value:a?`${a.key}-copy`:"",onValueChanged:e=>{""===e||v.includes(e)?(N.root.style.borderBottom="1px solid red",T.style.opacity="100%"):(N.root.style.borderBottom="none",T.style.opacity="0%")}});N.setTooltip("Template key used for campaign prefix"),x.setTooltip("Template name"),x.root.style.borderBottom="none",N.root.style.borderBottom="none",C.style.opacity="0%",T.style.opacity="0%";const I=t.input.string("Sequence Column",{value:null!==(s=null==a?void 0:a.sequenceColumnName)&&void 0!==s?s:"",nullable:!1});I.setTooltip("Name of the sequence column in the dataset (mandatory)");const F=t.divText("Sequence column name is required",{classes:"hit-triage-error-div"});F.style.opacity="0%",I.onChanged.subscribe(()=>{var e;(null===(e=I.value)||void 0===e?void 0:e.trim())?(I.root.style.borderBottom="none",F.style.opacity="0%"):(I.root.style.borderBottom="1px solid red",F.style.opacity="100%")});const P=t.input.string("Molecule Column",{value:null!==(r=null==a?void 0:a.moleculeColumnName)&&void 0!==r?r:"",nullable:!0});P.setTooltip("Name of the molecule column (optional). If empty, sequences will be auto-converted to molecules.");let _=null;const k=a||{compute:{descriptors:{enabled:!0,args:[]},functions:[]}},V=yield Oe(i,e=>{_=e},()=>null,k,!1);V.root.classList.add("hit-triage-new-template-functions-input"),0===Object.entries(n).length&&Array.from(new Set(o.Func.find({meta:{role:j}}).concat(o.Func.find({tags:[j]})))).forEach(e=>{var t;n[null!==(t=e.friendlyName)&&void 0!==t?t:e.name]=e});const L=Object.keys(n),O=t.input.choice(E,{value:L[0],items:L}),D=t.input.choice("Ingest using",{value:null!==(d=null==a?void 0:a.dataSourceType)&&void 0!==d?d:"Query",items:["Query","File"],onValueChanged:e=>{O.root.style.display="Query"===e?"block":"none"}});(null==a?void 0:a.dataSourceType)&&(O.root.style.display="Query"===a.dataSourceType?"block":"none");const $=Ue(null==a?void 0:a.campaignFields),M=t.div([t.h2("Details"),t.div([x,C]),t.div([N,T]),t.h2("Sequence Configuration"),t.div([I,F]),P.root,t.h2("Data Ingestion"),D.root,O.root,b.dataFileInput,$.fieldsDiv,t.h2("Compute"),V.root,t.h2("Submit"),w.root],"ui-form"),R=t.buttonsInput([]),U=null!==(p=null===(u=R.getElementsByClassName("ui-input-editor"))||void 0===u?void 0:u[0])&&void 0!==p?p:R;M.appendChild(R);const H=new Promise(e=>{const i=t.button(B,()=>e());U.appendChild(i)}),q=new Promise(i=>{const n=t.bigButton(S,()=>function(){return Mt(this,void 0,void 0,function*(){var t,n,o,a,s,r,d,u,p,h;if(V.okProxy(),"100%"===C.style.opacity)return void e.shell.error("Template name is empty or already exists");if("100%"===T.style.opacity)return void e.shell.error("Template key is empty or already exists");if(!(null===(t=I.value)||void 0===t?void 0:t.trim()))return void e.shell.error("Sequence column name is required");const v=w.value?y[w.value]:void 0,f=Object.assign(Object.assign({name:x.value,key:N.value,sequenceColumnName:I.value.trim(),moleculeColumnName:(null===(n=P.value)||void 0===n?void 0:n.trim())||void 0,campaignFields:$.getFields(),dataSourceType:null!==(o=D.value)&&void 0!==o?o:"Query",layoutViewState:null!==(a=b.getLayoutViewState())&&void 0!==a?a:void 0,compute:{descriptors:{enabled:!!(null===(s=null==_?void 0:_.descriptors)||void 0===s?void 0:s.length),args:null!==(r=null==_?void 0:_.descriptors)&&void 0!==r?r:[]},functions:Object.entries(null!==(d=null==_?void 0:_.externals)&&void 0!==d?d:{}).map(([e,t])=>{const i=e.split(":");return{name:i[1],package:i[0],args:t}}),scripts:Object.entries(null!==(u=null==_?void 0:_.scripts)&&void 0!==u?u:{}).filter(([e,t])=>e.startsWith(l)&&3===e.split(":").length).map(([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}}),queries:Object.entries(null!==(p=null==_?void 0:_.queries)&&void 0!==p?p:{}).filter(([e,t])=>e.startsWith(c)&&3===e.split(":").length).map(([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}})}},v?{submit:{fName:v.name,package:ne(v)}}:{}),{queryFunctionName:"Query"===D.value&&null!==(h=O.value)&&void 0!==h?h:void 0});mi.files.writeAsText(`${m}/${f.name}.json`,JSON.stringify(f)),e.shell.info("Template created successfully"),i(f)})}());U.appendChild(n)});return{root:M,template:q,cancelPromise:H}})}(this.app,this.getDataSourceFunctionsMap(),i),a=new o.ViewBase,s=e.shell.v;a.name="New Template",a.root.appendChild(n.root),a.parentCall=this.app.parentCall,e.shell.addView(a),a.path=new URL(this.app.baseUrl).pathname+"/new-template",a.parentView=s;const{sub:r}=le(e.shell.v,this.app.appName,T,()=>{e.shell.v=s,a.close()});n.template.then(t=>Rt(this,void 0,void 0,function*(){yield this.init(t),a.close(),ce(a),e.shell.v=s,r.unsubscribe()})),n.cancelPromise.then(()=>{r.unsubscribe(),a.close(),e.shell.v=s})})}}class Ut extends ut{constructor(e){super(e,"PepTriage",e=>new jt(e))}get seqColName(){return this._seqColName}prepareDataFrame(t){return i=this,n=void 0,s=function*(){var i;const n=t;if(!this.dataFrame)return;yield this.dataFrame.meta.detectSemanticTypes();const a=n.sequenceColumnName;let s=a?this.dataFrame.col(a):null;if(s||(s=this.dataFrame.columns.bySemType(o.SEMTYPE.MACROMOLECULE)),!s)throw new Error(`Sequence column '${null!=a?a:"Macromolecule"}' not found in the dataset. Make sure the data contains a column with sequences.`);this._seqColName=s.name;const r=o.TaskBarProgressIndicator.create("Initializing sequences...");try{const t=yield async function(){const e=o.Func.find({package:"Bio",name:"getSeqHelper"});if(0===e.length)throw new Error("Package 'Bio' must be installed for SeqHelper.");return(await e[0].prepare().call()).getOutputParamValue()}(),a=t.getSeqHandler(s);yield a.refinerPromise,t.getSeqHandler(s);const l=n.moleculeColumnName;let c=l?this.dataFrame.col(l):null;if(c||(c=this.dataFrame.columns.bySemType(o.SEMTYPE.MOLECULE)),!c&&(r.update(50,"Converting sequences to molecules..."),yield e.functions.call("Bio:toAtomicLevel",{table:this.dataFrame,seqCol:s,nonlinear:!0}),yield this.dataFrame.meta.detectSemanticTypes(),c=null!==(i=this.dataFrame.columns.bySemTypeAll(o.SEMTYPE.MOLECULE).find(e=>e.name.toLowerCase().includes(s.name.toLowerCase())))&&void 0!==i?i:null,!c))return void e.shell.warning("Failed to convert sequences to molecules. Calculations may not work.");this.reorderColumns(s.name,c.name)}catch(t){mi.logger.error(t),e.shell.error("Error preparing sequence data: "+(t instanceof Error?t.message:t))}finally{r.close()}},new((a=void 0)||(a=Promise))(function(e,t){function o(e){try{l(s.next(e))}catch(e){t(e)}}function r(e){try{l(s.throw(e))}catch(e){t(e)}}function l(t){var i;t.done?e(t.value):(i=t.value,i instanceof a?i:new a(function(e){e(i)})).then(o,r)}l((s=s.apply(i,n||[])).next())});var i,n,a,s}reorderColumns(e,t){if(!this.dataFrame)return;const i=this.dataFrame.col(e),n=this.dataFrame.col(t);i&&(this.dataFrame.columns.remove(e),this.dataFrame.columns.insert(i,0)),n&&(this.dataFrame.columns.remove(t),this.dataFrame.columns.insert(n,1))}}var Ht=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(s,r)}l((n=n.apply(e,t||[])).next())})};function qt(e){return Ht(this,void 0,void 0,function*(){yield vi.hitTriageAppTreeBrowser(e)})}function Yt(e){return Ht(this,void 0,void 0,function*(){yield vi.hitDesignAppTreeBrowser(e)})}function Gt(e){return Ht(this,void 0,void 0,function*(){yield vi.peptiHitAppTreeBrowser(e)})}function Wt(){return Ht(this,void 0,void 0,function*(){return yield vi.hitTriageApp()})}function zt(){return Ht(this,void 0,void 0,function*(){return yield vi.hitDesignApp()})}function Jt(){return Ht(this,void 0,void 0,function*(){return yield vi.peptiHitApp()})}function Qt(e){return Ht(this,void 0,void 0,function*(){yield vi.pepTriageAppTreeBrowser(e)})}function Kt(){return Ht(this,void 0,void 0,function*(){return yield vi.pepTriageApp()})}function Zt(){return Ht(this,void 0,void 0,function*(){return yield vi.demoFileIngest()})}function Xt(){return Ht(this,void 0,void 0,function*(){return yield vi.demoFileIngest1()})}function ei(e){return Ht(this,void 0,void 0,function*(){return yield vi.demoFileIngest2(e)})}function ti(e){return Ht(this,void 0,void 0,function*(){return yield vi.demoPeptideSequences(e)})}function ii(e,t){return Ht(this,void 0,void 0,function*(){yield vi.demoFileSubmit(e,t)})}function ni(){return Ht(this,void 0,void 0,function*(){yield vi.registerMoleculesToViD()})}function oi(e){return vi.hitDesignVidPanel(e)}function ai(){return vi.gasteigerCellRenderer()}function si(e){return Ht(this,void 0,void 0,function*(){return yield vi.htPackageSettingEditor(e)})}var ri=function(e,t,i,n){var o,a=arguments.length,s=a<3?t:null===n?n=Object.getOwnPropertyDescriptor(t,i):n;if("object"==typeof Reflect&&"function"==typeof Reflect.decorate)s=Reflect.decorate(e,t,i,n);else for(var r=e.length-1;r>=0;r--)(o=e[r])&&(s=(a<3?o(s):a>3?o(t,i,s):o(t,i))||s);return a>3&&s&&Object.defineProperty(t,i,s),s},li=function(e,t){if("object"==typeof Reflect&&"function"==typeof Reflect.metadata)return Reflect.metadata(e,t)},ci=function(e,t){return function(i,n){t(i,n,e)}},di=function(e,t,i,n){return new(i||(i=Promise))(function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i(function(e){e(t)})).then(s,r)}l((n=n.apply(e,t||[])).next())})};class pi extends o.Package{constructor(){super(...arguments),this.molToSmilesLruCache=new o.LruCache(2e3),this.campaignsCache={}}convertToSmiles(t){return t?this.molToSmilesLruCache.getOrCreate(t,t=>e.chem.convert(t,e.chem.Notation.Unknown,e.chem.Notation.Smiles)):""}loadCampaigns(t,i){return di(this,void 0,void 0,function*(){return this.campaignsCache[t]||(this.campaignsCache[t]=yield function(t,i){return ae(this,void 0,void 0,function*(){const n=(yield mi.files.list(`${t}/campaigns`)).filter(e=>-1===i.indexOf(e.name)),o={},a=n.map(i=>ae(this,void 0,void 0,function*(){try{const n=JSON.parse(yield mi.files.readAsText(`${t}/campaigns/${i.name}/${h}`));if(n.authorUserId&&n.permissions&&!(yield me(n.authorUserId,n.permissions)))return null;if(n.authorUserId&&!n.authorUserFriendlyName){const t=yield e.dapi.users.find(n.authorUserId);t&&(n.authorUserFriendlyName=t.friendlyName)}o[n.name]=n}catch(e){console.error(e)}return null}));return yield Promise.all(a),o})}(t,null!=i?i:[])),this.campaignsCache[t]})}saveCampaignJson(e,t){return di(this,void 0,void 0,function*(){const i=`${e}/campaigns/${t.name}/${h}`;yield this.files.writeAsText(i,JSON.stringify(t)),this.campaignsCache[e][t.name]=t})}}const mi=new pi;function hi(i,n){return di(this,void 0,void 0,function*(){var a,s,r;const l=t.div([],{style:{width:"50px",height:"24px",position:"relative"}});l.innerHTML='<div class="grok-loader"><div></div><div></div><div></div><div></div></div>';const c=i.item(l),d=yield mi.loadCampaigns(n,[]);let u=null,p=!0;for(const[t,n]of Object.entries(d)){const t=null!==(a=n.templateName)&&void 0!==a?a:null===(s=n.template)||void 0===s?void 0:s.name,l=t?i.getOrCreateGroup(t,null,p):i;p=!1;const c=l.item(null!==(r=n.friendlyName)&&void 0!==r?r:n.name);c.root.addEventListener("dblclick",e=>{e.stopImmediatePropagation(),e.stopPropagation(),e.preventDefault()}),o.debounce(c.onSelected,200).subscribe(t=>di(this,void 0,void 0,function*(){var t;try{const i="ingest"in n?n.ingest.query:n.savePath;if(!i||!(yield e.dapi.files.exists(i)))return void e.shell.error("File not found: "+i);const a=yield e.dapi.files.readCsv(i);if(!a)return;a.name=null!==(t=n.friendlyName)&&void 0!==t?t:n.name;const s=n.columnSemTypes;if(s)for(const[m,h]of Object.entries(s)){const v=a.columns.byName(m);v&&(v.semType=h,h===o.SEMTYPE.MACROMOLECULE&&m===w&&(v.setTag("units","helm"),v.setTag(".alphabetIsMultichar","true"),v.setTag("cell.renderer","helm")))}const r=document.activeElement;let l=!1;function c(){setTimeout(()=>{!l&&r&&document.activeElement!==r&&r&&"focus"in r&&r.focus()})}window.addEventListener("focusout",c);try{u&&u.close()}catch(f){}try{u=e.shell.addTableView(a);const g=n.layout;g&&u.loadLayout(o.ViewLayout.fromViewState(g))}catch(y){console.error(y)}function d(){window.removeEventListener("focusout",c)}function p(){d(),l=!0}window.addEventListener("click",p,{once:!0}),setTimeout(()=>{d(),window.removeEventListener("click",p)},5e3)}catch(A){console.error(A)}}))}c.remove()})}class vi{static hitTriageAppTreeBrowser(e){return di(this,void 0,void 0,function*(){yield hi(e,"Hit Triage")})}static hitDesignAppTreeBrowser(e){return di(this,void 0,void 0,function*(){yield hi(e,"Hit Design")})}static peptiHitAppTreeBrowser(e){return di(this,void 0,void 0,function*(){yield hi(e,"PeptiHit")})}static hitTriageApp(){return di(this,void 0,void 0,function*(){const t=e.functions.getCurrentCall();return new ut(t).multiView})}static hitDesignApp(){return di(this,void 0,void 0,function*(){const t=e.functions.getCurrentCall();return new kt(t).multiView})}static peptiHitApp(){return di(this,void 0,void 0,function*(){const t=e.functions.getCurrentCall();return yield e.functions.call("Bio:initBio",{}),new $t(t).multiView})}static pepTriageAppTreeBrowser(e){return di(this,void 0,void 0,function*(){yield hi(e,"PepTriage")})}static pepTriageApp(){return di(this,void 0,void 0,function*(){const t=e.functions.getCurrentCall();return yield e.functions.call("Bio:initBio",{}),new Ut(t).multiView})}static demoFileIngest(){return di(this,void 0,void 0,function*(){const t=e.data.demo.molecules(100);return t.name="100 Molecules",t})}static demoFileIngest1(){return di(this,void 0,void 0,function*(){const t=e.data.demo.molecules(5e3);return t.name="5000 Molecules",t})}static demoFileIngest2(t){return di(this,void 0,void 0,function*(){const i=e.data.demo.molecules(t);return i.name="Variable Molecules number",i})}static demoPeptideSequences(e){return di(this,void 0,void 0,function*(){const t=["PEPTIDE1{A.G.L.V.K}$$$$V2.0","PEPTIDE1{G.A.V.L.I.P}$$$$V2.0","PEPTIDE1{F.W.Y.H.K.R}$$$$V2.0","PEPTIDE1{D.E.N.Q.S.T}$$$$V2.0","PEPTIDE1{A.R.N.D.C.E}$$$$V2.0","PEPTIDE1{G.H.I.L.K.M}$$$$V2.0","PEPTIDE1{F.P.S.T.W.Y}$$$$V2.0","PEPTIDE1{V.A.G.L.I}$$$$V2.0","PEPTIDE1{K.R.H.D.E}$$$$V2.0","PEPTIDE1{N.Q.S.T.C.M}$$$$V2.0","PEPTIDE1{A.V.L.I.P.F}$$$$V2.0","PEPTIDE1{W.Y.G.A.R}$$$$V2.0","PEPTIDE1{K.H.D.E.N.Q}$$$$V2.0","PEPTIDE1{S.T.C.M.F.W}$$$$V2.0","PEPTIDE1{Y.A.G.V.L.I}$$$$V2.0","PEPTIDE1{P.K.R.H.D}$$$$V2.0","PEPTIDE1{E.N.Q.S.T.C}$$$$V2.0","PEPTIDE1{M.F.W.Y.A.G}$$$$V2.0","PEPTIDE1{V.L.I.P.K.R}$$$$V2.0","PEPTIDE1{H.D.E.N.Q.S}$$$$V2.0"],i=[];for(let n=0;n<e;n++)i.push(t[n%t.length]);const n=o.Column.fromStrings("Helm",i);n.semType=o.SEMTYPE.MACROMOLECULE,n.setTag("units","helm"),n.setTag(".alphabetIsMultichar","true");const a=o.DataFrame.fromColumns([n]);return a.name="Demo Peptide Sequences",a})}static demoFileSubmit(t,i){return di(this,void 0,void 0,function*(){e.shell.info(t.rowCount),e.shell.info(i)})}static registerMoleculesToViD(){return di(this,void 0,void 0,function*(){!function(){Nt(this,void 0,void 0,function*(){var i;const n="Hit Design",a=yield mi.loadCampaigns(n),s=Object.keys(a),r=t.input.choice("Select Campaign",{value:null,nullable:!0,items:s,tooltipText:"Select campaign to register its molecules. Leave empty to register all campaigns"}),l=yield new Promise(e=>Nt(this,void 0,void 0,function*(){t.dialog("Register Existing Campaign Molecules").add(t.divText("This operation will go through all molecules in the selected campaign(s) and register them into V-iD storage.\n This operation is irreversible.")).add(t.divText("You can select a specific campaign or leave it empty to process all campaigns.")).add(t.divText("After this opteration, all VIDs throughout all campaigns will become unique, and old V-iDs will no longer be valid.")).add(t.divText("WARNING: Depending on the number of molecules, this operation can take a long time.")).add(r).onOK(()=>{if(r.value){const t=a[r.value];e([t])}else{const t=s.map(e=>a[e]);e(t)}}).onCancel(()=>e(null)).show()})),c=o.TaskBarProgressIndicator.create("Registering molecules...");if(!l||0===l.length)return void c.close();const d=l.length;for(const t of l){c.update(0/d*100,`Processing campaign: ${t.name}`);try{const o=`System.AppData/HitTriage/${n}/campaigns`,a=null!==(i=null==t?void 0:t.savePath)&&void 0!==i?i:`${o}/${t.name}/${m}`,s=yield e.dapi.files.readCsv(a);if(!s){e.shell.warning(`Failed to load campaign table for campaign ${t.name} at path ${a}`),console.warn(`Failed to load campaign table for campaign ${t.name} at path ${a}`);continue}const r=s.col(A);if(!r){e.shell.warning(`Molecule column not found in campaign ${t.name} table`),console.warn(`Molecule column not found in campaign ${t.name} table`);continue}const l=s.col(b);if(!l){e.shell.warning(`V-iD column not found in campaign ${t.name} table`),console.warn(`V-iD column not found in campaign ${t.name} table`);continue}const c=r.toList(),d=yield Pt(c,t.name,n);for(let e=0;e<s.rowCount;e++){const t=c[e];if(!t||""===t){l.set(e,"",!1);continue}const i=d.get(t);i&&l.set(e,i,!1)}l.fireValuesChanged(),yield e.dapi.files.writeAsText(a,s.toCsv()),e.shell.info(`Finished processing campaign ${t.name}`),console.log(`Finished processing campaign ${t.name}`)}catch(i){e.shell.error(`Error processing campaign ${t.name}. See console for details.`),console.error(`Error processing campaign ${t.name} molecules registration:`,i)}}c.close()})}()})}static hitDesignVidPanel(i){return o.Widget.fromRoot(t.card(t.wait(()=>di(this,void 0,void 0,function*(){if(!(null==i?void 0:i.value))return t.divText("No V-iD provided");const n=yield et.getCampaignsByVid(i.value,null);if(!n||0===n.rowCount)return t.divText(`No campaigns found for V-iD: ${i.value}`);const o=yield et.getMoleculeByVid(i.value);if(!o||0===o.rowCount)return t.divText(`No molecule found for V-iD: ${i.value}`);const a=function(e){var t;const i=null===(t=mi.meta)||void 0===t?void 0:t.sok;if(!i)throw new Error("Secret key for SMILES deobfuscation is not set");const n=atob(e);let o="";for(let e=0;e<n.length;e++){const t=n.charCodeAt(e),a=i.charCodeAt(e%i.length);o+=String.fromCharCode(t^a)}return o}(o.col("mh_string").get(0)),s=e.chem.drawMolecule(a,300,300),r=new Map;for(let e=0;e<n.rowCount;e++){const t=n.col("app_name").get(e),i=n.col("campaign_id").get(e),o=n.col("created_by").get(e);r.has(t)||r.set(t,[]),r.get(t).push({campaignId:i,createdBy:o})}const l=t.divV([s],{style:{gap:"10px",justifyContent:"center"}});for(const[e,i]of r.entries()){const n=t.table(i.map(e=>[e.campaignId,e.createdBy]),e=>[e[0],e[1]],["Campaigns","Created By"]),o=t.divV([t.h3(`${e} Campaigns`),n],{style:{gap:"4px"}});l.appendChild(o)}return l}))))}static gasteigerCellRenderer(){return new Vt}static htPackageSettingEditor(i){return di(this,void 0,void 0,function*(){return function(i){return Et(this,void 0,void 0,function*(){var n;const a=i.filter(e=>"DefaultUserGroupsSharing"===e.category),s=[];for(const i of a){const n=`${i.name[0].toUpperCase()}${i.name.slice(1)}`,a=i.get(null),r=yield St(a),l=t.input.userGroups(n);yield o.delay(200),l.value=r,l.onInput.subscribe(()=>{var t;try{const e=(null===(t=l.value)||void 0===t?void 0:t.length)?JSON.stringify(l.value.map(e=>e.id)):"";i.set(null,e)}catch(t){e.shell.error("Error Setting group. Check console for more details"),console.error(t)}}),l.setTooltip(`Selected groups will be granted ${n.toLowerCase()} permissions by default on newly created campaigns`),s.push(l)}const r=o.Widget.fromRoot(t.form(s,{style:{overflow:"visible"}}));r.root.prepend(t.h1("Default Campaign Sharing",{style:{marginBottom:"6px",marginTop:"6px"}}));const l=i.find(e=>e.name===Tt);if(l){const i='Default storage for newly created campaigns. For each app, folders will be created under their name. For example, for Hit Design, the campaign files will be saved under <b>"Your folder/Hit Design/campaigns/enriched_table.csv"</b>';let a=i;const s=null!==(n=l.get(null))&&void 0!==n?n:xt,c=t.h1("Default Campaign Storage",{style:{marginBottom:"6px",marginTop:"6px"}}),d=t.input.string("Folder Path",{value:s});t.tooltip.bind(d.input,()=>a),o.debounce(d.onChanged,200).subscribe(t=>Et(this,void 0,void 0,function*(){const t=d.value;try{if(!t)return l.set(null,xt),a=i+'<br><br> <b style="color: red">Cannot be empty.</b>',void d.input.classList.add("d4-invalid");if(!(yield e.dapi.files.exists(t)))return l.set(null,xt),a=i+'<br><br> <b style="color: red">Folder does not exist.</b>',void d.input.classList.add("d4-invalid");l.set(null,t),a=i,d.input.classList.remove("d4-invalid")}catch(t){e.shell.error("Error Setting default storage. Check console for more details"),console.error(t)}})),r.root.appendChild(c),r.root.appendChild(d.root)}return setTimeout(()=>{var e;return(null===(e=r.root.parentElement)||void 0===e?void 0:e.style)&&(r.root.parentElement.style.overflow="visible")},200),r})}(i)})}}ri([e.decorators.treeBrowser({meta:{app:"Hit Triage"}}),li("design:type",Function),li("design:paramtypes",[o.TreeViewGroup]),li("design:returntype",Promise)],vi,"hitTriageAppTreeBrowser",null),ri([e.decorators.treeBrowser({meta:{app:"Hit Design"}}),li("design:type",Function),li("design:paramtypes",[o.TreeViewGroup]),li("design:returntype",Promise)],vi,"hitDesignAppTreeBrowser",null),ri([e.decorators.treeBrowser({meta:{app:"PeptiHit"}}),li("design:type",Function),li("design:paramtypes",[o.TreeViewGroup]),li("design:returntype",Promise)],vi,"peptiHitAppTreeBrowser",null),ri([e.decorators.app({browsePath:"Chem",name:"Hit Triage",tags:["app"]}),li("design:type",Function),li("design:paramtypes",[]),li("design:returntype",Promise)],vi,"hitTriageApp",null),ri([e.decorators.app({icon:"images/icons/hit-design-icon.png",browsePath:"Chem",name:"Hit Design",tags:["app"]}),li("design:type",Function),li("design:paramtypes",[]),li("design:returntype",Promise)],vi,"hitDesignApp",null),ri([e.decorators.app({icon:"images/icons/pepti-hit-icon.png",browsePath:"Peptides",name:"PeptiHit",tags:["app"]}),li("design:type",Function),li("design:paramtypes",[]),li("design:returntype",Promise)],vi,"peptiHitApp",null),ri([e.decorators.treeBrowser({meta:{app:"PepTriage"}}),li("design:type",Function),li("design:paramtypes",[o.TreeViewGroup]),li("design:returntype",Promise)],vi,"pepTriageAppTreeBrowser",null),ri([e.decorators.app({icon:"images/icons/hit-triage-icon.png",browsePath:"Peptides",name:"PepTriage",tags:["app"]}),li("design:type",Function),li("design:paramtypes",[]),li("design:returntype",Promise)],vi,"pepTriageApp",null),ri([e.decorators.func({name:"Demo Molecules 100",meta:{role:"hitTriageDataSource"}}),li("design:type",Function),li("design:paramtypes",[]),li("design:returntype",Promise)],vi,"demoFileIngest",null),ri([e.decorators.func({name:"Demo Molecules 5000",meta:{role:"hitTriageDataSource"}}),li("design:type",Function),li("design:paramtypes",[]),li("design:returntype",Promise)],vi,"demoFileIngest1",null),ri([e.decorators.func({name:"Demo Molecules variable",meta:{role:"hitTriageDataSource"}}),ci(0,e.decorators.param({type:"int",options:{description:"Molecules counts"}})),li("design:type",Function),li("design:paramtypes",[Number]),li("design:returntype",Promise)],vi,"demoFileIngest2",null),ri([e.decorators.func({name:"Demo Peptide Sequences",meta:{role:"pepTriageDataSource"}}),li("design:type",Function),li("design:paramtypes",[Number]),li("design:returntype",Promise)],vi,"demoPeptideSequences",null),ri([e.decorators.func({name:"Demo File Submit",meta:{role:"hitTriageSubmitFunction"}}),ci(0,e.decorators.param({options:{description:"Dataframe"}})),ci(1,e.decorators.param({options:{description:"Molecules column name"}})),li("design:type",Function),li("design:paramtypes",[o.DataFrame,String]),li("design:returntype",Promise)],vi,"demoFileSubmit",null),ri([e.decorators.func({}),li("design:type",Function),li("design:paramtypes",[]),li("design:returntype",Promise)],vi,"registerMoleculesToViD",null),ri([e.decorators.panel({name:"Hit Design V-iD"}),ci(0,e.decorators.param({type:"semantic_value",options:{semType:"HIT_DESIGN_VID"}})),li("design:type",Function),li("design:paramtypes",[o.SemanticValue]),li("design:returntype",o.Widget)],vi,"hitDesignVidPanel",null),ri([e.decorators.func({meta:{cellType:"customGasteigerPNG",columnTags:"quality=customGasteigerPNG",role:"cellRenderer"},name:"gasteigerRenderer",outputs:[{type:"grid_cell_renderer",name:"result"}]}),li("design:type",Function),li("design:paramtypes",[]),li("design:returntype",Vt)],vi,"gasteigerCellRenderer",null),ri([e.decorators.func({name:"Hit Triage package settings editor",meta:{role:"packageSettingsEditor"},tags:["packageSettingsEditor"]}),ci(0,e.decorators.param({name:"propList",type:"object"})),li("design:type",Function),li("design:paramtypes",[Array]),li("design:returntype",Promise)],vi,"htPackageSettingEditor",null)})(),hittriage=n})();
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