@datagrok/hit-triage 1.1.6 → 1.1.7

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Files changed (6) hide show
  1. package/dist/package.js +1 -1
  2. package/dist/package.js.map +1 -1
  3. package/package.json +1 -1
  4. package/src/app/dialogs/functions-dialog.ts +25 -20
  5. package/src/app/hit-design-app.ts +5 -31
  6. package/src/app/hit-triage-app.ts +0 -11
package/dist/package.js CHANGED
@@ -1,2 +1,2 @@
1
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this.createNewTemplate(),o.setUpdateIndicator(this.root,!1)}))),b);r.addOptions(l),yield s(),Z()(t).empty(),t.appendChild(r.root)}))}checkCampaign(e){return re(this,void 0,void 0,(function*(){const t=location.search,i=new URLSearchParams(t);if(!i.has(a)&&!e)return;const n=null!=e?e:i.get(a);if(!(yield Fe.files.exists(`Hit Triage/campaigns/${n}/campaign.json`)))return;const o=JSON.parse(yield Fe.files.readAsText(`Hit Triage/campaigns/${n}/campaign.json`)),s=JSON.parse(yield Fe.files.readAsText(`Hit Triage/templates/${o.templateName}.json`));return this.app.setTemplate(s,o.filters,n,o.ingest),e&&R(a,e),o}))}getCampaignsTable(){return re(this,void 0,void 0,(function*(){const e=(yield Fe.files.list("Hit Triage/campaigns")).filter((e=>-1===this.deletedCampaigns.indexOf(e.name))),t={};for(const i of e){const e=JSON.parse(yield Fe.files.readAsText(`Hit Triage/campaigns/${i.name}/campaign.json`));t[e.name]=e}const i=Object.values(t).map((e=>({name:e.name,createDate:e.createDate,rowCount:e.rowCount,filtered:e.filteredRowCount,status:e.status}))),n=o.table(i,(e=>[o.link(e.name,(()=>this.setCampaign(e.name)),"",""),e.createDate,e.rowCount,e.filtered,e.status,o.icons.delete((()=>re(this,void 0,void 0,(function*(){o.dialog("Delete campaign").add(o.divText(`Are you sure you want to delete campaign ${e.name}?`)).onOK((()=>re(this,void 0,void 0,(function*(){yield this.deleteCampaign("Hit Triage",e.name),this.deletedCampaigns.push(e.name),yield this.init()})))).show()}))),"Delete campaign")]),["Name","Created","Total","Selected","Status",""]);return n.style.color="var(--grey-5)",n}))}setCampaign(e){return re(this,void 0,void 0,(function*(){const t=yield this.checkCampaign(e);this.app.campaign=t}))}getNewCampaignAccordeon(i,n){return re(this,void 0,void 0,(function*(){o.setUpdateIndicator(n,!0);const{root:a,promise:s,cancelPromise:r}=yield function(i,n){var a,s;return G(this,void 0,void 0,(function*(){const r=o.divText("",{style:{color:"red"}});let c=null;const u=()=>G(this,void 0,void 0,(function*(){try{if(c=d.value,!c)return;if(yield c.meta.detectSemanticTypes(),!c.columns.bySemType(t.SEMTYPE.MOLECULE))return void(r.innerText="No molecules column found");r.innerText=""}catch(e){r.innerText="Error parsing file"}})),d=o.tableInput("Dataframe",null,void 0,u);yield u();const p=o.div([d,r]);0===Object.keys(n).length&&(t.Func.find({tags:[l]}).forEach((e=>{var t;n[null!==(t=e.friendlyName)&&void 0!==t?t:e.name]=e})),(yield e.dapi.queries.include("params,connection").filter("#HitTriageDataSource").list()).forEach((e=>{var t;n[null!==(t=e.friendlyName)&&void 0!==t?t:e.name]=e})));let m=null;const h=()=>G(this,void 0,void 0,(function*(){const e=n[v.value];m=e.prepare();const t=yield m.getEditor();t.classList.remove("ui-form"),f.innerHTML="",f.appendChild(t)})),f=o.div([]),v=o.choiceInput(y,null!==(a=i.queryFunctionName)&&void 0!==a?a:Object.keys(n)[0],Object.keys(n),h);yield h(),i.queryFunctionName&&(null===(s=v.root.getElementsByTagName("select").item(0))||void 0===s||s.setAttribute("disabled","true"));const g=o.div([v,f]);g.style.display="none";const b=o.div([p,g]),C=i.campaignFields.map((e=>e.type===t.SEMTYPE.MOLECULE?Object.assign(Object.assign({},e),{type:"String",semtype:t.SEMTYPE.MOLECULE}):e)).map((e=>t.Property.fromOptions(Object.assign({name:e.name,type:W[e.type],nullable:!e.required},e.semtype?{semType:e.semtype}:{})))),A={},x=C.length?o.input.form(A,C):o.div();x.classList.remove("ui-form"),"File"===i.dataSourceType?(p.style.display="inherit",g.style.display="none"):(p.style.display="none",g.style.display="inherit");const I=o.div([b,...C.length?[x]:[]]),E=o.buttonsInput([]);return I.appendChild(E),{promise:new Promise((t=>{const a=()=>G(this,void 0,void 0,(function*(){if("File"===i.dataSourceType){if(!c)return void e.shell.error("No file selected");const i=c;i.name=c.name,t({df:i,type:"File",campaignProps:A})}else{const i=n[v.value];if(!i)return void e.shell.error("No function selected");const o={};Object.entries(m.inputs).forEach((([e,t])=>{o[e]=t}));const a=yield i.apply(o);t({df:a,type:"Query",campaignProps:A})}})),s=o.bigButton(w,(()=>a()));E.appendChild(s)})),root:I,cancelPromise:new Promise((e=>{o.button(T,(()=>e()))}))}}))}(i,this.dataSourceFunctionsMap);return o.setUpdateIndicator(n,!1),s.then((e=>re(this,void 0,void 0,(function*(){this.app.dataFrame=e.df,this.app._fileInputType=e.type,yield this.app.setTemplate(i),this.app.campaignProps=e.campaignProps,this.app.saveCampaign(void 0,!1)})))),r.then((()=>{this.init()})),a}))}createNewTemplate(){return re(this,void 0,void 0,(function*(){const i=yield ee(this.app,this.dataSourceFunctionsMap),n=new t.ViewBase,o=e.shell.v;n.name="New Template",n.root.appendChild(i.root),n.parentCall=this.app.parentCall,e.shell.addView(n),n.path=new URL(this.app.baseUrl).pathname+"/new-template",n.parentView=o;const{sub:a}=U(e.shell.v,"Hit Triage",b,(()=>{e.shell.v=o,n.close()}));i.template.then((t=>re(this,void 0,void 0,(function*(){yield this.init(t),n.close(),$(n),e.shell.v=o,a.unsubscribe()})))),i.cancelPromise.then((()=>{a.unsubscribe(),n.close(),e.shell.v=o}))}))}}class ce extends ne{constructor(e){super(e),this.name="Submit"}render(){return o.empty(this.root),o.divV([o.h1("Summary"),o.div([o.tableFromMap(this.app.getSummary())])])}onActivated(){this.render()}submit(){var i,n,o,a,s;return n=this,o=void 0,s=function*(){const n=null===(i=this.app.template)||void 0===i?void 0:i.submit;if(!n)return;const o=t.Func.find({name:n.fName,package:n.package})[0];if(!o)return void e.shell.error(`Function ${n.fName} not found.`);const a=t.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield o.apply({df:a,molecules:this.app.molColName}),this.app.campaign&&(this.app.campaign.status="Submitted"),this.app.saveCampaign("Submitted"),e.shell.info("Submitted successfully.")},new((a=void 0)||(a=Promise))((function(e,t){function i(e){try{l(s.next(e))}catch(e){t(e)}}function r(e){try{l(s.throw(e))}catch(e){t(e)}}function l(t){var n;t.done?e(t.value):(n=t.value,n instanceof a?n:new a((function(e){e(n)}))).then(i,r)}l((s=s.apply(n,o||[])).next())}))}}var ue=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};class de{constructor(i){this.parentCall=i,this.resetBaseUrl(),this.computeFunctions=new Promise((i=>ue(this,void 0,void 0,(function*(){const n=t.Func.find({tags:[r]}),o=yield e.dapi.scripts.include("params").filter("#HitTriageFunction").list(),a=yield e.dapi.queries.include("params,connection").filter("#HitTriageFunction").list();i({functions:n,scripts:o,queries:a})}))))}resetBaseUrl(){const e=window.location.href,t=new URL(e);this.baseUrl=t.origin+t.pathname}getFilterType(e){const i=this.dataFrame.col(e);return(null==i?void 0:i.semType)===t.SEMTYPE.MOLECULE?t.FILTER_TYPE.SUBSTRUCTURE:(null==i?void 0:i.type)===t.COLUMN_TYPE.BOOL?t.FILTER_TYPE.BOOL_COLUMNS:(null==i?void 0:i.type)===t.COLUMN_TYPE.STRING?t.FILTER_TYPE.CATEGORICAL:t.FILTER_TYPE.HISTOGRAM}download(e,i,n=!1){const o=document.createElement("a"),a=t.DataFrame.fromColumns(e.columns.toList().filter((e=>!e.name.startsWith("~")))).toCsv({filteredRowsOnly:n});o.setAttribute("href","data:text/plain;charset=utf-8,"+encodeURIComponent(a)),o.setAttribute("download",i+".csv"),o.click()}getNewCampaignName(e,t){return ue(this,void 0,void 0,(function*(){const i=(yield Fe.files.list(e)).map((e=>e.name)).filter((e=>e.startsWith(t)));if(0===i.length)return t+"-1";const n=i.map((e=>e.split("-")[1])).filter(Boolean).map((e=>parseInt(e,10))).sort();return t+"-"+(n[n.length-1]+1).toString()}))}setBaseUrl(){const e=document.title;if(history.replaceState){const t={Title:e,Url:this.baseUrl};history.replaceState(t,t.Title,t.Url)}}}var pe=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))},me=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};function he(e){let t=0;if(e.length>1)for(const i of e.toList()){if(!i||!i.startsWith(h[0])||i.length!==h.length)continue;const e=parseInt(i.substring(1));isNaN(e)||(t=Math.max(e,t))}return`V${"".concat(...new Array(h.length-1-(t+1).toString().length).fill("0"))}${t+1}`}function fe(i,n,o){var a,s;return me(this,void 0,void 0,(function*(){const r=n.col(o);if(!r)throw new Error("There is no molecule column in dataframe");for(let t=0;t<r.length;t++){if(r.isNone(t))continue;const i=r.get(t);if(!i)continue;const n=e.chem.convert(i,e.chem.Notation.Unknown,e.chem.Notation.Smiles);r.set(t,n,!1)}i.descriptors&&i.descriptors.length>0&&(yield e.chem.descriptors(n,o,i.descriptors));for(const e of Object.keys(i.externals)){const a=i.externals[e],s=t.Func.find({package:e.split(":")[0],name:e.split(":")[1]})[0],r=s.inputs[0].name,l=s.inputs[1].name;a&&(yield s.apply(Object.assign(Object.assign({},a),{[r]:n,[l]:o})))}for(const t of Object.keys(null!==(a=i.scripts)&&void 0!==a?a:{})){const a=i.scripts[t];if(a){const i=t.split(":")[2];if(!i)continue;try{const t=yield e.dapi.scripts.find(i);if(!t)continue;const s=t.inputs[0].name,r=t.inputs[1].name;yield t.apply(Object.assign(Object.assign({},a),{[s]:n,[r]:o}))}catch(e){console.error(e)}}}for(const t of Object.keys(null!==(s=i.queries)&&void 0!==s?s:{})){const a=i.queries[t];if(a){const i=t.split(":")[2];if(!i)continue;try{const t=yield e.dapi.queries.find(i);if(!t)continue;const s=t.inputs[0].name,r=n.col(o).toList(),l=yield t.apply(Object.assign(Object.assign({},a),{[s]:r}));l&&(yield Y(n,o,l))}catch(e){console.error(e)}}}}))}var ve=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};class ge extends de{constructor(i){super(i),this._filterViewName="Hit triage | Pick",this._filterDescriptions=[],this.campaignProps={},this._pickViewPromise=null,this._infoView=new le(this),this.multiView=new t.MultiView({viewFactories:{[this._infoView.name]:()=>this._infoView}}),this.multiView.tabs.onTabChanged.subscribe((e=>{this.multiView.currentView instanceof ne&&this.multiView.currentView.onActivated()})),this.multiView.parentCall=i,e.shell.addView(this.multiView),e.events.onCurrentViewChanged.subscribe((()=>{var t,i,n,o;try{(null===(t=e.shell.v)||void 0===t?void 0:t.name)===this.currentPickViewId&&(e.shell.windows.showHelp=!1,this.setBaseUrl(),R(a,null!==(o=null!==(i=this._campaignId)&&void 0!==i?i:null===(n=this._campaign)||void 0===n?void 0:n.name)&&void 0!==o?o:""))}catch(e){console.error(e)}}))}setTemplate(i,n,o,s){var r,l,c,u,d,p,m,h,f,v,g,y,b,w;return ve(this,void 0,void 0,(function*(){if((null===(r=this._pickView)||void 0===r?void 0:r.dataFrame)&&e.shell.closeTable(null===(l=this._pickView)||void 0===l?void 0:l.dataFrame),this._pickView=void 0,o?s&&(this._fileInputType=s.type,"File"===s.type?this.dataFrame=yield e.dapi.files.readCsv(s.query):this.dataFrame=yield e.functions.call(s.query)):(o=yield this.getNewCampaignName("Hit Triage/campaigns",i.key),R(a,o)),!this.dataFrame)return void console.error("Dataframe is empty.");if((null===(c=this._campaign)||void 0===c?void 0:c.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach((([e,t])=>{const i=this.dataFrame.columns.byName(e);i&&(i.semType=t)})),yield this.dataFrame.meta.detectSemanticTypes(),this._molColName=null!==(d=null===(u=this.dataFrame.columns.bySemType(t.SEMTYPE.MOLECULE))||void 0===u?void 0:u.name)&&void 0!==d?d:void 0,this._dfName=null!==(p=this.dataFrame.name)&&void 0!==p?p:null==s?void 0:s.query,this.dataFrame.name=null!==(h=null!==(m=this._dfName)&&void 0!==m?m:this.dataFrame.name)&&void 0!==h?h:"Molecules",this._campaignId=o,this.template=(null===(f=this.campaign)||void 0===f?void 0:f.template)?Object.assign(Object.assign({},this.campaign.template),{dataSourceType:i.dataSourceType,queryFunctionName:i.queryFunctionName}):i,this._campaignFilters=n,!n){const e={},t={},n={};i.compute.functions.forEach((t=>{const i=`${t.package}:${t.name}`;e[i]=t.args})),null===(v=i.compute.scripts)||void 0===v||v.forEach((e=>{const i=`HTScript:${e.name}:${e.id}`;t[i]=e.args})),null===(g=i.compute.queries)||void 0===g||g.forEach((e=>{const t=`HTQuery:${e.name}:${e.id}`;n[t]=e.args})),yield fe({descriptors:i.compute.descriptors.enabled?i.compute.descriptors.args:[],externals:e,scripts:t,queries:n},this.dataFrame,this._molColName)}const C=e.shell.v,A=e.shell.addView(this.pickView);this.currentPickViewId=A.name,this._submitView=new ce(this),this.setBaseUrl(),R(a,null!==(w=null!==(y=this._campaignId)&&void 0!==y?y:null===(b=this._campaign)||void 0===b?void 0:b.name)&&void 0!==w?w:"");const T=A;setTimeout((()=>{this._pickViewPromise&&this._pickViewPromise.then((()=>{const{sub:t}=U(T,"Hit Triage","Pick",(()=>{e.shell.v=C,T.close(),t.unsubscribe()}))}))}),300),e.shell.windows.showHelp=!1}))}get filterSettings(){return this._campaignFilters}get campaignId(){return this._campaignId}get pickView(){return this._pickView=this.getFilterView()}get molColName(){var e,i,n;return null!==(e=this._molColName)&&void 0!==e?e:this._molColName=null===(n=null===(i=this.dataFrame)||void 0===i?void 0:i.columns.bySemType(t.SEMTYPE.MOLECULE))||void 0===n?void 0:n.name}get fileInputType(){return this._fileInputType}get campaign(){return this._campaign}set campaign(e){this._campaign=e}getFilterView(){let e=null;this._pickViewPromise=new Promise((t=>{e=t})),this.dataFrame.col(u)||this.dataFrame.columns.addNewBool(u).init(!1);const i=t.TableView.create(this.dataFrame,!1),n=i.getRibbonPanels(),a=o.iconFA("wrench",(()=>ve(this,void 0,void 0,(function*(){z(this,(e=>ve(this,void 0,void 0,(function*(){var t,i,n,o,a,s,r;const l=this.template.compute.descriptors.args,c=this.template.compute.functions,u=null!==(t=this.template.compute.scripts)&&void 0!==t?t:[],d=null!==(i=this.template.compute.queries)&&void 0!==i?i:[],p=e.descriptors,m={descriptors:{enabled:!!(null===(n=null==e?void 0:e.descriptors)||void 0===n?void 0:n.length),args:null!==(o=null==e?void 0:e.descriptors)&&void 0!==o?o:[]},functions:Object.entries(null!==(a=null==e?void 0:e.externals)&&void 0!==a?a:{}).map((([e,t])=>{const i=e.split(":");return{name:i[1],package:i[0],args:t}})),scripts:Object.entries(null!==(s=null==e?void 0:e.scripts)&&void 0!==s?s:{}).filter((([e,t])=>e.startsWith(f)&&3===e.split(":").length)).map((([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}})),queries:Object.entries(null!==(r=null==e?void 0:e.queries)&&void 0!==r?r:{}).filter((([e,t])=>e.startsWith(v)&&3===e.split(":").length)).map((([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}}))};this.template.compute=m;const h=p.filter((e=>!l.includes(e))),g=m.functions.filter((e=>{if(!c.some((t=>t.name===e.name&&t.package===e.package)))return!0;const t=c.find((t=>t.name===e.name&&t.package===e.package));return!Object.entries(e.args).every((([e,i])=>t.args[e]===i))})),y=m.scripts.filter((e=>{if(!u.some((t=>t.id===e.id)))return!0;const t=u.find((t=>t.id===e.id));return!Object.entries(e.args).every((([e,i])=>t.args[e]===i))})),b=m.queries.filter((e=>{if(!d.some((t=>t.id===e.id)))return!0;const t=d.find((t=>t.id===e.id));return!Object.entries(e.args).every((([e,i])=>t.args[e]===i))})),w={};g.forEach((e=>{const t=`${e.package}:${e.name}`;w[t]=e.args}));const C={};y.forEach((e=>{const t=`HTScript:${e.name}:${e.id}`;C[t]=e.args}));const A={};b.forEach((e=>{const t=`HTQuery:${e.name}:${e.id}`;A[t]=e.args})),yield fe({descriptors:h,externals:w,scripts:C,queries:A},this.dataFrame,this._molColName),this.saveCampaign("In Progress",!1)}))),(()=>null),this.template,!0)}))),"Calculate additional properties"),s=o.bigButton("Submit",(()=>{var e;const t=null===(e=this._submitView)||void 0===e?void 0:e.render();if(t){const e=o.dialog("Submit");e.add(t),e.addButton("Save",(()=>{this.saveCampaign(),e.close()})),e.addButton("Submit",(()=>{var t;null===(t=this._submitView)||void 0===t||t.submit(),e.close()})),e.show()}}));s.classList.add("hit-design-submit-button");const r=q(n);return n.push([a,...r?[]:[s]]),i.setRibbonPanels(n),i.name=this._filterViewName,setTimeout((()=>ve(this,void 0,void 0,(function*(){var n;i._onAdded(),yield new Promise((e=>setTimeout(e,1e3)));const o=i.filters(this._campaignFilters?{filters:this._campaignFilters}:void 0);if(null===(n=this._campaign)||void 0===n?void 0:n.layout)try{const e=t.ViewLayout.fromViewState(this._campaign.layout);i.loadLayout(e)}catch(e){console.error(e)}i.dataFrame.onFilterChanged.subscribe((e=>{this._filterDescriptions=Array.from(i.dataFrame.rows.filters),this._campaignFilters=o.getOptions().look.filters})),setTimeout((()=>{this._filterDescriptions=Array.from(i.dataFrame.rows.filters),this._campaignFilters=o.getOptions().look.filters}),300),e&&e()}))),300),i.parentCall=this.parentCall,i}getSummary(){var e,t,i,n,a,s,r;const l=null!==(t=null===(e=this.campaign)||void 0===e?void 0:e.campaignFields)&&void 0!==t?t:this.campaignProps;return Object.assign(Object.assign({Template:null!==(n=null===(i=this.template)||void 0===i?void 0:i.name)&&void 0!==n?n:"Molecules","File path":o.divH([o.link(null!==(a=this._dfName)&&void 0!==a?a:"-",(()=>this.download(this.dataFrame,"molecules")),A)],{style:{alignItems:"center"}})},l),{"Number of molecules":this.dataFrame.rowCount.toString(),"Enrichment methods":[this.template.compute.descriptors.enabled?"descriptors":"",...this.template.compute.functions.map((e=>e.name))].filter((e=>e&&""!==e.trim())).join(", "),Filters:this._filterDescriptions.join(", "),"Result Molecules":o.divH([o.link(null!==(r=null===(s=this.dataFrame)||void 0===s?void 0:s.filter.trueCount.toString())&&void 0!==r?r:"0",(()=>{this.download(this.dataFrame,"hits",!0)}),A)],{style:{alignItems:"center"}})})}saveCampaign(i,n=!0){var a,s,r,l,c,u;return ve(this,void 0,void 0,(function*(){const d=this.campaignId,p=this.filterSettings,m=this.template.name,h=this.dataFrame,f=`System:AppData/HitTriage/Hit Triage/campaigns/${d}/`,v=null!=d?d:yield function(e){return pe(this,void 0,void 0,(function*(){return new Promise((t=>pe(this,void 0,void 0,(function*(){const i=o.stringInput("Campaign name","");o.dialog("Save Campaign").add(o.div(i.root)).onOK((function(){i.value&&""!==i.value?t(i.value):t(e)})).show()}))))}))}(d),g={};h.columns.toList().forEach((e=>g[e.name]=e.semType));const y={name:v,templateName:m,filters:null!=p?p:{},ingest:{type:"File",query:`${f}enriched_table.csv`,molColName:this.molColName},status:null!==(s=null!=i?i:null===(a=this.campaign)||void 0===a?void 0:a.status)&&void 0!==s?s:"In Progress",createDate:null!==(l=null===(r=this.campaign)||void 0===r?void 0:r.createDate)&&void 0!==l?l:M(new Date),campaignFields:null!==(u=null===(c=this.campaign)||void 0===c?void 0:c.campaignFields)&&void 0!==u?u:this.campaignProps,columnSemTypes:g,rowCount:h.rowCount,filteredRowCount:h.filter.trueCount,template:this.template};this.campaign=y;const b=t.DataFrame.fromColumns(h.columns.toList().filter((e=>!e.name.startsWith("~")))).toCsv();yield Fe.files.writeAsText(`Hit Triage/campaigns/${d}/enriched_table.csv`,b);const w=this._pickView.saveLayout();w?y.layout=w.viewState:e.shell.warning("Layout cound not be saved"),yield Fe.files.writeAsText(`Hit Triage/campaigns/${d}/campaign.json`,JSON.stringify(y)),n&&e.shell.info("Campaign saved successfully.")}))}}var ye=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};function be(i,n){var a,s,l,u,d,p,m,h,g,y,b;return ye(this,void 0,void 0,(function*(){const w=t.Func.find({tags:[r]}),A=yield Fe.files.list("Hit Design/templates");let x=!1,I=!1;const E=A.map((e=>e.name.slice(0,-5))),N=[];for(const e of A)try{const t=JSON.parse(yield Fe.files.readAsText(e));N.push(t.key)}catch(e){console.error(e)}const S=t.Func.find({tags:[c]}),_={};S.forEach((e=>{var t;_[null!==(t=e.friendlyName)&&void 0!==t?t:e.name]=e}));const F=o.choiceInput("Submit function",null,[null,...Object.keys(_)]);F.nullable=!0,F.value=null!==(s=null===(a=null==n?void 0:n.submit)||void 0===a?void 0:a.fName)&&void 0!==s?s:null,F.setTooltip("Select function to be called upon submitting");const B=o.divText("Template name is empty or already exists",{classes:"hit-triage-error-div"}),O=o.divText("Template key is empty or already exists",{classes:"hit-triage-error-div"});function P(){var e,t,i,n;if(""===k.value||E.includes(null!==(t=null===(e=k.value)||void 0===e?void 0:e.trim())&&void 0!==t?t:"")){const e=null!==(i=k.input.offsetLeft)&&void 0!==i?i:0,t=null!==(n=k.input.offsetWidth)&&void 0!==n?n:0;B.style.marginLeft=`${e}px`,B.style.width=`${t}px`,B.style.opacity="100%",B.style.borderTop="1px solid red",x=!0}else B.style.borderTop="none",B.style.opacity="0%",x=!1}const k=o.stringInput("Name",null!==(l=null==n?void 0:n.name)&&void 0!==l?l:"",P);function V(){var e,t,i,n;if(""===L.value||N.includes(null!==(t=null===(e=L.value)||void 0===e?void 0:e.trim())&&void 0!==t?t:"")){const e=null!==(i=L.input.offsetLeft)&&void 0!==i?i:0,t=null!==(n=L.input.offsetWidth)&&void 0!==n?n:0;O.style.marginLeft=`${e}px`,O.style.width=`${t}px`,O.style.borderTop="1px solid red",O.style.opacity="100%",I=!0}else O.style.opacity="0%",O.style.borderTop="none",I=!1}const L=o.stringInput("Key",null!==(u=null==n?void 0:n.key)&&void 0!==u?u:"",V);L.setTooltip("Template key used for campaign prefix"),k.setTooltip("Template name"),k.root.style.borderBottom="none",L.root.style.borderBottom="none",B.style.opacity="0%",O.style.opacity="0%";const j={Descriptors:"Descriptors"};w.forEach((e=>{var t;j[null!==(t=e.friendlyName)&&void 0!==t?t:e.name]=`${e.package.name}:${e.name}`}));let D=null;const H={compute:{descriptors:{enabled:!0,args:null!==(m=null===(p=null===(d=null==n?void 0:n.compute)||void 0===d?void 0:d.descriptors)||void 0===p?void 0:p.args)&&void 0!==m?m:[]},functions:null!==(g=null===(h=null==n?void 0:n.compute)||void 0===h?void 0:h.functions)&&void 0!==g?g:[]}},M=yield z(i,(e=>{D=e}),(()=>null),H,!1);M.root.classList.add("hit-triage-new-template-functions-input");const R=te(null==n?void 0:n.campaignFields),U=function(e){const i=[t.Property.fromOptions({name:"Name",type:t.TYPE.STRING})],n=new K(i,e?e.map((e=>({Name:e}))):void 0,{horizontalInputNames:!0});let o={};return n.onItemAdded.subscribe((e=>{o=null!=e?e:{}})),n.onAddingItemChanged.subscribe((e=>{e&&(o=e.item)})),{getFields:function(){const e=n.items.filter((e=>e.Name)).map((e=>e.Name));return o.Name&&""!==o.Name&&e.push(o.Name),e},fieldsDiv:n.root}}(null==n?void 0:n.stages),$=o.divV([o.divV([k,B]),o.divV([L,O]),R.fieldsDiv]),q=o.h2("Stages");o.tooltip.bind(q,'Define Stages for designed molecules. For example, "Design", "Synthesis", "Test", etc.');const Y=o.h2("Compute");o.tooltip.bind(Y,'Define functions to be calculated for each molecule. For example, "Descriptors", "Descriptors:Descriptors", etc.');const W=o.div([o.h2("Details"),$,q,U.fieldsDiv,Y,M.root,o.h2("Submit"),F.root],"ui-form"),G=o.buttonsInput([]);W.appendChild(G);const J=null!==(b=null===(y=G.getElementsByClassName("ui-input-editor"))||void 0===y?void 0:y[0])&&void 0!==b?b:G,Z=new Promise((e=>{const t=o.button(T,(()=>e()));J.appendChild(t)})),Q=new Promise((t=>{const i=o.bigButton(C,(()=>function(){var i,n,o,a,s;return ye(this,void 0,void 0,(function*(){if(P(),V(),M.okProxy(),x||!k.value||""===k.value)return void e.shell.error("Template name is empty or already exists");if(I||!L.value||""===L.value)return void e.shell.error("Template key is empty or already exists");const r=F.value?_[F.value]:void 0,l=Object.assign({name:k.value,key:L.value,campaignFields:R.getFields(),stages:U.getFields(),compute:{descriptors:{enabled:!!(null===(i=null==D?void 0:D.descriptors)||void 0===i?void 0:i.length),args:null!==(n=null==D?void 0:D.descriptors)&&void 0!==n?n:[]},functions:Object.entries(null!==(o=null==D?void 0:D.externals)&&void 0!==o?o:{}).map((([e,t])=>{const i=e.split(":");return{name:i[1],package:i[0],args:t}})),scripts:Object.entries(null!==(a=null==D?void 0:D.scripts)&&void 0!==a?a:{}).filter((([e,t])=>e.startsWith(f)&&3===e.split(":").length)).map((([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}})),queries:Object.entries(null!==(s=null==D?void 0:D.queries)&&void 0!==s?s:{}).filter((([e,t])=>e.startsWith(v)&&3===e.split(":").length)).map((([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}}))}},r?{submit:{fName:r.name,package:r.package.name}}:{});var c;c=l,Fe.files.writeAsText(`Hit Design/templates/${c.name}.json`,JSON.stringify(c)),e.shell.info("Template created successfully"),t(l)}))}()));J.appendChild(i)}));return{root:W,template:Q,cancelPromise:Z}}))}var we=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};class Ce extends ne{constructor(t){super(t),this.deletedCampaigns=[],this.name="Hit Design",e.shell.windows.showHelp=!0,e.shell.windows.help.showHelp(Fe.webRoot+"README_HD.md"),this.checkCampaign().then((e=>{this.app.campaign=e,this.init()}))}onActivated(){e.shell.windows.showHelp=!0,e.shell.windows.help.showHelp(Fe.webRoot+"README_HD.md")}init(e){return we(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0);try{const t=o.h1(x),i=o.h1(I,{style:{marginLeft:"10px"}}),n=se.appHeader({iconPath:Fe.webRoot+"/images/icons/hit-design-icon.png",learnMoreUrl:"https://github.com/datagrok-ai/public/blob/master/packages/HitTriage/README_HD.md",description:"- Configure your own workflow using the template editor\n- Sketch molecules in the molecular spreadsheet\n- Annotate and share ideas with the team\n- Calculate different molecular properties\n- Save campaigns and continue from where you left off\n- Submit final selection to the function of your choice"}),a=o.div(),s=o.divH([]),r=o.div([s,a],"ui-form"),l=yield this.getCampaignsTable();Z()(this.root).empty(),this.root.appendChild(o.div([o.divV([n,t],{style:{marginLeft:"10px"}}),l,i,r])),yield this.startNewCampaign(a,s,e),this.app.resetBaseUrl()}finally{o.setUpdateIndicator(this.root,!1)}}))}startNewCampaign(e,t,i){var n;return we(this,void 0,void 0,(function*(){const a=(yield Fe.files.list("Hit Design/templates")).filter((e=>e.name.endsWith(".json"))).map((e=>e.name.slice(0,-5)));i&&!a.includes(i.name)&&a.push(i.name);let s=null;const r=()=>we(this,void 0,void 0,(function*(){const t=l.value,n=i&&i.name===t?i:JSON.parse(yield Fe.files.readAsText("Hit Design/templates/"+t+".json"));s=n;const o=yield this.getNewCampaignAccordeon(n);Z()(e).empty(),e.appendChild(o)})),l=o.choiceInput("Template",null!==(n=null==i?void 0:i.name)&&void 0!==n?n:a[0],a,(()=>we(this,void 0,void 0,(function*(){yield r()}))));l.root.style.width="100%";const c=o.icons.add((()=>{this.createNewTemplate()}),b),u=o.icons.copy((()=>{s&&this.createNewTemplate(s)}),"Clone template");c.style.color="#2083d5",l.addOptions(u),l.addOptions(c),yield r(),Z()(t).empty(),t.appendChild(l.root)}))}checkCampaign(e){var t;return we(this,void 0,void 0,(function*(){const i=location.search,n=new URLSearchParams(i);if(!n.has(s)&&!e)return;const o=null!=e?e:n.get(s);if(!(yield Fe.files.exists(`Hit Design/campaigns/${o}/campaign.json`)))return;const a=JSON.parse(yield Fe.files.readAsText(`Hit Design/campaigns/${o}/campaign.json`));a&&(this.app.campaign=a);const r=null!==(t=a.template)&&void 0!==t?t:JSON.parse(yield Fe.files.readAsText(`Hit Design/templates/${a.templateName}.json`));return yield this.app.setTemplate(r,o),e&&R(s,e),a.template=r,a}))}getCampaignsTable(){return we(this,void 0,void 0,(function*(){const e=(yield Fe.files.list("Hit Design/campaigns")).filter((e=>-1===this.deletedCampaigns.indexOf(e.name))),t={};for(const i of e){const e=JSON.parse(yield Fe.files.readAsText(`Hit Design/campaigns/${i.name}/campaign.json`));t[e.name]=e}const i=o.table(Object.values(t),(e=>[o.link(e.name,(()=>this.setCampaign(e.name)),"",""),e.createDate,e.rowCount,e.status,o.icons.delete((()=>we(this,void 0,void 0,(function*(){o.dialog("Delete campaign").add(o.divText(`Are you sure you want to delete campaign ${e.name}?`)).onOK((()=>we(this,void 0,void 0,(function*(){yield this.deleteCampaign("Hit Design",e.name),this.deletedCampaigns.push(e.name),yield this.init()})))).show()}))),"Delete campaign")]),["Name","Created","Molecules","Status",""]);return i.style.color="var(--grey-5)",i.style.marginLeft="24px",i}))}setCampaign(e){return we(this,void 0,void 0,(function*(){const t=yield this.checkCampaign(e);this.app.campaign=t}))}getNewCampaignAccordeon(i){return we(this,void 0,void 0,(function*(){const{root:n,promise:a,cancelPromise:s}=function(i){var n,a;const s=t.DataFrame.create(1),r=s.columns.addNew(p,t.TYPE.STRING);r.semType=t.SEMTYPE.MOLECULE,r.setTag(t.TAGS.UNITS,t.UNITS.Molecule.SMILES),r.set(0,null),(null===(n=null==i?void 0:i.stages)||void 0===n?void 0:n.length)>0&&s.columns.addNew(d,t.TYPE.STRING).set(0,i.stages[0]);const l=s.columns.addNew(m,t.TYPE.STRING);l.set(0,he(l));const c=i.campaignFields.map((e=>e.type===t.SEMTYPE.MOLECULE?Object.assign(Object.assign({},e),{type:"String",semtype:t.SEMTYPE.MOLECULE}):e)).map((e=>t.Property.fromOptions(Object.assign({name:e.name,type:W[e.type],nullable:!e.required},e.semtype?{semType:e.semtype}:{})))),u={},h=o.input.form(u,c);h.classList.remove("ui-form");const f=o.div([...(null===(a=i.campaignFields)||void 0===a||a.length,[]),h]),v=o.buttonsInput([]);return f.appendChild(v),{promise:new Promise((t=>{const n=o.bigButton(w,(()=>{for(const t of i.campaignFields)if(t.required&&(!u[t.name]||""===u[t.name]))return void e.shell.error(`Field '${t.name}' is required`);t({df:s,campaignProps:u})}));v.appendChild(n)})),root:f,cancelPromise:new Promise((e=>{o.button(T,(()=>e()))}))}}(i);return a.then((e=>we(this,void 0,void 0,(function*(){this.app.dataFrame=e.df,yield this.app.setTemplate(i),this.app.campaignProps=e.campaignProps,this.app.saveCampaign(void 0,!1)})))),s.then((()=>{this.init()})),n}))}createNewTemplate(i){return we(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0);try{const n=yield be(this.app,i),a=new t.ViewBase,s=e.shell.v;a.name="New Template",a.root.appendChild(n.root),a.parentCall=this.app.parentCall,e.shell.addView(a),a.path=new URL(this.app.baseUrl).pathname+"/new-template";const{sub:r}=U(a,"Hit Design",b,(()=>we(this,void 0,void 0,(function*(){e.shell.v=s,a.close()}))));n.template.then((t=>we(this,void 0,void 0,(function*(){yield this.init(t),a.close(),$(a),e.shell.v=s,r.unsubscribe()})))),n.cancelPromise.then((()=>we(this,void 0,void 0,(function*(){r.unsubscribe(),a.close(),e.shell.v=s}))))}finally{o.setUpdateIndicator(this.root,!1)}}))}}class Ae extends ne{constructor(e){super(e),this.name="Submit"}render(){return o.empty(this.root),o.divV([o.h1("Summary"),o.div([o.tableFromMap(this.app.getSummary())])])}onActivated(){this.render()}submit(){var i,n,o,a,s;return n=this,o=void 0,s=function*(){const n=null===(i=this.app.template)||void 0===i?void 0:i.submit;if(!n)return;const o=t.Func.find({name:n.fName,package:n.package})[0];if(!o)return void e.shell.error(`Function ${n.fName} not found.`);const a=t.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield o.apply({df:a,molecules:this.app.molColName}),this.app.campaign&&(this.app.campaign.status="Submitted"),this.app.saveCampaign("Submitted"),e.shell.info("Submitted successfully.")},new((a=void 0)||(a=Promise))((function(e,t){function i(e){try{l(s.next(e))}catch(e){t(e)}}function r(e){try{l(s.throw(e))}catch(e){t(e)}}function l(t){var n;t.done?e(t.value):(n=t.value,n instanceof a?n:new a((function(e){e(n)}))).then(i,r)}l((s=s.apply(n,o||[])).next())}))}}var Te=i(143),xe={};xe.styleTagTransform=j(),xe.setAttributes=P(),xe.insert=B().bind(null,"head"),xe.domAPI=_(),xe.insertStyleElement=V(),N()(Te.Z,xe),Te.Z&&Te.Z.locals&&Te.Z.locals;class Ie extends ne{constructor(e){super(e),this.v=null,this.name="Progress Tracker"}render(){return i=this,n=void 0,s=function*(){return new Promise((i=>{var n,a;o.empty(this.root),this.app.dataFrame.columns.names().forEach((e=>{e.startsWith("~")&&this.app.dataFrame.columns.remove(e)})),this.v=t.Viewer.fromType(t.VIEWER.TILE_VIEWER,this.app.dataFrame,{lanesColumnName:d,lanes:null!==(a=null===(n=this.app.template)||void 0===n?void 0:n.stages)&&void 0!==a?a:[]}),this.root.appendChild(this.v.root),this.v.root.style.height="100%",this.v.root.style.width="100%",setTimeout((()=>{var t,n,a;null===(n=null===(t=this.v)||void 0===t?void 0:t.view)||void 0===n||n._onAdded();const s=null===(a=e.shell.v)||void 0===a?void 0:a.getRibbonPanels();if(s){if(q(s))return void i();const t=o.bigButton("Design view",(()=>{const t=e.shell.view(this.app.designViewName);t&&(e.shell.v=t)})),n=o.bigButton("Submit",(()=>{var e;const t=null===(e=this.app._submitView)||void 0===e?void 0:e.render();if(t){const e=o.dialog("Submit");e.add(t),e.addButton("Save",(()=>{this.app.saveCampaign(),e.close()})),e.addButton("Submit",(()=>{var t;null===(t=this.app._submitView)||void 0===t||t.submit(),e.close()})),e.show()}}));n.classList.add("hit-design-submit-button"),s.push([t,n]),e.shell.v.setRibbonPanels(s)}i()}),5)}))},new((a=void 0)||(a=Promise))((function(e,t){function o(e){try{l(s.next(e))}catch(e){t(e)}}function r(e){try{l(s.throw(e))}catch(e){t(e)}}function l(t){var i;t.done?e(t.value):(i=t.value,i instanceof a?i:new a((function(e){e(i)}))).then(o,r)}l((s=s.apply(i,n||[])).next())}));var i,n,a,s}onActivated(){this.render()}destroy(){var e;null===(e=this.v)||void 0===e||e.detach()}}var Ee=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};class Ne extends de{constructor(i){super(i),this._tilesViewTab=null,this._designViewName="Design",this._filePath="System.AppData/HitTriage/Hit Design/campaigns",this._molColName=p,this.campaignProps={},this.processedValues=[],this._extraStageColsCount=0,this._infoView=new Ce(this),this.multiView=new t.MultiView({viewFactories:{[this._infoView.name]:()=>this._infoView}}),this.multiView.tabs.onTabChanged.subscribe((e=>{this.multiView.currentView instanceof ne&&this.multiView.currentView.onActivated()})),this.multiView.parentCall=i,this.mainView=e.shell.addView(this.multiView),e.events.onCurrentViewChanged.subscribe((()=>Ee(this,void 0,void 0,(function*(){var t,i,n,o,s,r,l,c,u;try{if((null===(t=e.shell.v)||void 0===t?void 0:t.name)===this.currentDesignViewId||(null===(i=e.shell.v)||void 0===i?void 0:i.name)===this.currentTilesViewId){e.shell.windows.showHelp=!1,this.setBaseUrl(),R(a,null!==(s=null!==(n=this._campaignId)&&void 0!==n?n:null===(o=this._campaign)||void 0===o?void 0:o.name)&&void 0!==s?s:""),(null===(r=e.shell.v)||void 0===r?void 0:r.name)===this.currentTilesViewId?yield null===(l=this._tilesView)||void 0===l?void 0:l.render():null===(c=this._tilesView)||void 0===c||c.destroy();const{sub:t}=U(e.shell.v,"Hit Design",null===(u=e.shell.v)||void 0===u?void 0:u.name,(()=>{var i,n;e.shell.v=this.mainView,null===(i=this._tilesView)||void 0===i||i.close(),null===(n=this._designView)||void 0===n||n.close(),this._infoView.init(),t.unsubscribe()}))}}catch(e){console.error(e)}}))))}setTemplate(i,n){var o,r,l,c,u,d,m,h,f,v,g,y;return Ee(this,void 0,void 0,(function*(){if(n){const t="System.AppData/HitTriage/Hit Design/campaigns";this._filePath=null!==(l=null===(r=this.campaign)||void 0===r?void 0:r.savePath)&&void 0!==l?l:`${t}/${n}/enriched_table.csv`,this.dataFrame=yield e.dapi.files.readCsv(this._filePath),(null===(c=this._campaign)||void 0===c?void 0:c.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach((([e,t])=>{const i=this.dataFrame.columns.byName(e);i&&t&&(i.semType=t)}))}else(null===(o=this._designView)||void 0===o?void 0:o.dataFrame)&&e.shell.closeTable(this._designView.dataFrame),this._designView=void 0,n=yield this.getNewCampaignName("Hit Design/campaigns",i.key),R(s,n),this._filePath=`System.AppData/HitTriage/Hit Design/campaigns/${n}/enriched_table.csv`;if(!this.dataFrame)return void console.error("DataFrame is empty");yield this.dataFrame.meta.detectSemanticTypes(),this._molColName=null!==(d=null===(u=this.dataFrame.columns.bySemType(t.SEMTYPE.MOLECULE))||void 0===u?void 0:u.name)&&void 0!==d?d:p,this._dfName=null!==(m=(y=this.dataFrame).name)&&void 0!==m?m:y.name=n,this._campaignId=n,this.template=i,null!==(h=this._submitView)&&void 0!==h||(this._submitView=new Ae(this)),e.shell.windows.showHelp=!1,this._extraStageColsCount=this.dataFrame.rowCount-this.dataFrame.filter.trueCount;const b=e.shell.addView(this.designView);this.currentDesignViewId=b.name,this.setBaseUrl(),R(a,null!==(g=null!==(f=this._campaignId)&&void 0!==f?f:null===(v=this._campaign)||void 0===v?void 0:v.name)&&void 0!==g?g:""),this.campaign&&(this.campaign.template=i)}))}get campaignId(){return this._campaignId}get designView(){return this._designView=this.getDesignView()}get designViewName(){return this._designViewName}get molColName(){var e,i,n,o;return null!==(e=this._molColName)&&void 0!==e?e:this._molColName=null!==(o=null===(n=null===(i=this.dataFrame)||void 0===i?void 0:i.columns.bySemType(t.SEMTYPE.MOLECULE))||void 0===n?void 0:n.name)&&void 0!==o?o:p}get campaign(){return this._campaign}set campaign(e){this._campaign=e}getDesignView(){var i,n,a,s,r,l;const c=[],u=null===(i=this.dataFrame.col(this.molColName))||void 0===i?void 0:i.toList().every((e=>!e&&""===e)),h=t.TableView.create(this.dataFrame,!1);this._designViewName=null!==(a=null===(n=this.campaign)||void 0===n?void 0:n.name)&&void 0!==a?a:this._designViewName,h.name=this._designViewName,this.processedValues=this.dataFrame.getCol(this.molColName).toList(),setTimeout((()=>Ee(this,void 0,void 0,(function*(){var i,n;if(h._onAdded(),yield new Promise((e=>setTimeout(e,1e3))),null===(i=this._campaign)||void 0===i?void 0:i.layout)try{const e=t.ViewLayout.fromViewState(this._campaign.layout);h.loadLayout(e)}catch(e){console.error(e)}u&&e.functions.call("Chem:editMoleculeCell",{cell:h.grid.cell(this._molColName,0)}),c.push(this.dataFrame.onRowsAdded.subscribe((()=>{var t,i;try{if(this.processedValues=this.dataFrame.getCol(this.molColName).toList(),(null===(t=this.template.stages)||void 0===t?void 0:t.length)>0)for(let e=0;e<this.dataFrame.rowCount;e++){const t=this.dataFrame.col(d).get(e);t&&""!==t&&!(null===(i=this.dataFrame.col(d))||void 0===i?void 0:i.isNone(e))||this.dataFrame.set(d,e,this.template.stages[0])}let n=null;for(let e=0;e<this.dataFrame.rowCount;e++){const t=h.grid.cell(this.molColName,e);t&&(""!==t.cell.value&&null!==t.cell.value||(n=t))}n&&e.functions.call("Chem:editMoleculeCell",{cell:n})}catch(e){console.error(e)}}))),this.dataFrame&&c.push(null===(n=this.dataFrame)||void 0===n?void 0:n.onRowsRemoved.subscribe((()=>{try{this.processedValues=this.dataFrame.getCol(this.molColName).toList()}catch(e){console.error(e)}}))),c.push(e.events.onContextMenu.subscribe((i=>{var n,o,a,s,r;try{const e=null===(n=null==i?void 0:i.args)||void 0===n?void 0:n.context;if(!e)return;if((null==e?void 0:e.type)!==t.VIEWER.GRID)return;if(!e.tableView||e.tableView.id!==h.id)return;if((null===(s=null===(a=null===(o=null==i?void 0:i.args)||void 0===o?void 0:o.item)||void 0===a?void 0:a.tableColumn)||void 0===s?void 0:s.name)!==this.molColName)return;const l=null===(r=null==i?void 0:i.args)||void 0===r?void 0:r.menu;if(!l)return;l.item("Add new row",(()=>{this.dataFrame.rows.addNew(null,!0)})),l.item("Duplicate molecule",(()=>{var e,t,n,o;try{this.dataFrame.rows.addNew(null,!0);let a=null;for(let e=0;e<this.dataFrame.rowCount;e++){const t=h.grid.cell(this.molColName,e);t&&(""!==t.cell.value&&null!==t.cell.value||(a=t))}a&&(a.cell.value=null!==(o=null===(n=null===(t=null===(e=null==i?void 0:i.args)||void 0===e?void 0:e.item)||void 0===t?void 0:t.cell)||void 0===n?void 0:n.value)&&void 0!==o?o:"")}catch(e){console.error(e)}}))}catch(t){e.log.error(t)}}))),c.push(h.grid.onCellValueEdited.subscribe((i=>Ee(this,void 0,void 0,(function*(){var n,o,a,s;try{if((null===(n=i.tableColumn)||void 0===n?void 0:n.name)===d)return void(yield this.saveCampaign(void 0,!1));if((null===(o=i.tableColumn)||void 0===o?void 0:o.name)!==this.molColName)return;const r=i.cell.value,l=i.tableRowIndex;(null===(a=this.dataFrame.col(m))||void 0===a?void 0:a.get(l))&&""!==(null===(s=this.dataFrame.col(m))||void 0===s?void 0:s.get(l))||this.dataFrame.col(m).set(l,he(this.dataFrame.col(m)),!1);const c=this.template.compute;if(!r||""===r)return;const u=yield function(i,n,o,a=[],s=[]){return me(this,void 0,void 0,(function*(){const r=e.chem.convert(i,e.chem.Notation.Unknown,e.chem.Notation.Smiles),l=t.Column.fromStrings(p,[r]),c=t.DataFrame.fromColumns([l]);c.name="HD Single cell values",yield c.meta.detectSemanticTypes(),n.length&&(yield e.chem.descriptors(c,l.name,n));for(const e of o){const i=e.args,n=t.Func.find({package:e.package,name:e.name});if(!n.length||!n[0]){console.warn(`Function ${e.name} from package ${e.package} is not found`);continue}const o=n[0],a=o.inputs[0].name,s=o.inputs[1].name;yield o.apply(Object.assign(Object.assign({},i),{[a]:c,[s]:l.name}))}for(const t of a){const i=t.args;try{const n=yield e.dapi.scripts.find(t.id);if(n){const e=n.inputs[0].name,t=n.inputs[1].name;yield n.apply(Object.assign(Object.assign({},i),{[e]:c,[t]:l.name}))}}catch(e){console.error(e)}}for(const t of s){const i=t.args;try{const n=yield e.dapi.queries.find(t.id);if(n){const e=n.inputs[0].name,t=[r],o=yield n.apply(Object.assign(Object.assign({},i),{[e]:t}));if(!o||0===o.rowCount)continue;yield Y(c,p,o)}}catch(e){console.error(e)}}return c}))}(r,c.descriptors.args,c.functions,c.scripts,c.queries);for(const e of u.columns.toList())e.name!==p&&(this.dataFrame.columns.contains(e.name)||(this.dataFrame.columns.addNew(e.name,e.type).semType=e.semType),this.dataFrame.col(e.name).set(l,e.get(0),!1));this.dataFrame.fireValuesChanged(),this.saveCampaign(void 0,!1)}catch(e){console.error(e)}})))));const o=e.events.onViewRemoved.subscribe((e=>{e.id===h.id&&(c.forEach((e=>e.unsubscribe())),o.unsubscribe())}))}))),300);const g=null==h?void 0:h.getRibbonPanels();if(g&&!q(g)){const t=()=>Ee(this,void 0,void 0,(function*(){var e;z(this,(e=>Ee(this,void 0,void 0,(function*(){var t,i,n,a,s,r,l,c,u,d;const p=this.template.compute.descriptors.args,m=this.template.compute.functions,g=null!==(t=this.template.compute.scripts)&&void 0!==t?t:[],y=null!==(i=this.template.compute.queries)&&void 0!==i?i:[],b=e.descriptors,w={descriptors:{enabled:!!(null===(n=null==e?void 0:e.descriptors)||void 0===n?void 0:n.length),args:null!==(a=null==e?void 0:e.descriptors)&&void 0!==a?a:[]},functions:Object.entries(null!==(s=null==e?void 0:e.externals)&&void 0!==s?s:{}).map((([e,t])=>{const i=e.split(":");return{name:i[1],package:i[0],args:t}})),scripts:Object.entries(null!==(r=null==e?void 0:e.scripts)&&void 0!==r?r:{}).filter((([e,t])=>e.startsWith(f)&&3===e.split(":").length)).map((([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}})),queries:Object.entries(null!==(l=null==e?void 0:e.queries)&&void 0!==l?l:{}).filter((([e,t])=>e.startsWith(v)&&3===e.split(":").length)).map((([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}}))};this.template.compute=w,this.campaign.template=this.template;const C=b.filter((e=>!p.includes(e))),A={};Object.entries(null!==(c=null==e?void 0:e.externals)&&void 0!==c?c:{}).filter((([e,t])=>{const i=m.find((t=>`${t.package}:${t.name}`===e));return!i||!Object.entries(t).every((([e,t])=>i.args[e]===t))})).forEach((([e,t])=>{A[e]=t}));const T={};Object.entries(null!==(u=null==e?void 0:e.scripts)&&void 0!==u?u:{}).filter((([e,t])=>{const i=g.find((t=>`HTScript:${t.name}:${t.id}`===e));return!i||!Object.entries(t).every((([e,t])=>i.args[e]===t))})).forEach((([e,t])=>{T[e]=t}));const x={};Object.entries(null!==(d=null==e?void 0:e.queries)&&void 0!==d?d:{}).filter((([e,t])=>{const i=y.find((t=>`HTQuery:${t.name}:${t.id}`===e));return!i||!Object.entries(t).every((([e,t])=>i.args[e]===t))})).forEach((([e,t])=>{x[e]=t})),o.setUpdateIndicator(h.grid.root,!0);try{yield fe({descriptors:C,externals:A,scripts:T,queries:x},this.dataFrame,this.molColName),this.dataFrame.fireValuesChanged()}finally{o.setUpdateIndicator(h.grid.root,!1),this.saveCampaign(void 0,!1)}}))),(()=>null),null===(e=this.campaign)||void 0===e?void 0:e.template,!0)})),i=o.iconFA("wrench",t,"Calculate additional properties"),n=o.icons.add((()=>{var e;null===(e=this.dataFrame)||void 0===e||e.rows.addNew(null,!0)}),"Add new row"),a=o.bigButton("Progress tracker",(()=>{this.currentTilesViewId&&e.shell.view(this.currentTilesViewId)?e.shell.v=e.shell.view(this.currentTilesViewId):(this._tilesView=new Ie(this),this._tilesView.parentCall=this.parentCall,this._tilesViewTab=e.shell.addView(this._tilesView),this.currentTilesViewId=this._tilesViewTab.name,this._tilesView.onActivated())})),c=o.bigButton("Submit",(()=>{var e;const t=null===(e=this._submitView)||void 0===e?void 0:e.render();if(t){const e=o.dialog("Submit");e.add(t),e.addButton("Save",(()=>{this.saveCampaign(),e.close()})),e.addButton("Submit",(()=>{var t;null===(t=this._submitView)||void 0===t||t.submit(),e.close()})),e.show()}}));c.classList.add("hit-design-submit-button");const u=[c];null!==(l=null===(r=null===(s=this.template)||void 0===s?void 0:s.stages)||void 0===r?void 0:r.length)&&void 0!==l&&l&&u.unshift(a),this.campaign&&this.template&&(this.campaign.template||(this.campaign.template=this.template),u.unshift(i)),u.unshift(n),g.push(u),h.setRibbonPanels(g)}return h.parentCall=this.parentCall,h}getSummary(){var i,n,a,s;const r=()=>{var e,t;const i=this._filePath.indexOf(null!==(e=this.campaignId)&&void 0!==e?e:null===(t=this._campaign)||void 0===t?void 0:t.name);return-1===i?this._filePath:this._filePath.substring(0,i-1)},l=Object.assign({},null!==(n=null===(i=this.campaign)||void 0===i?void 0:i.campaignFields)&&void 0!==n?n:this.campaignProps);return this.template&&this.template.campaignFields&&Object.entries(l).forEach((([i,n])=>{const o=this.template.campaignFields.find((e=>e.name===i));o&&"Date"===o.type&&n?"Invalid Date"!==new Date(n).toString()?l[i]=new Date(n).toLocaleDateString():n.date?l[i]=new Date(n.date).toLocaleDateString():l[i]=n:o&&o.type===t.SEMTYPE.MOLECULE&&n&&(l[i]=e.chem.drawMolecule(n))})),Object.assign(Object.assign({Template:null!==(s=null===(a=this.template)||void 0===a?void 0:a.name)&&void 0!==s?s:"Molecules","File path":(()=>{const t=o.icons.edit((()=>{const i=r(),s=o.stringInput("Path",i),l=s.root.getElementsByTagName("label").item(0);l&&l.remove(),s.root.style.width="100%";const c=o.button("Save",(()=>Ee(this,void 0,void 0,(function*(){const i=yield function(){return Ee(this,void 0,void 0,(function*(){const t=s.value;return t&&""!==t.trim()?!!(yield e.dapi.files.exists(t))||(e.shell.error("Given folder does not exist"),!1):(e.shell.error("Path can not be empty"),!1)}))}();if(!i)return;const l=s.value;l.endsWith("/")?this._filePath=`${l}${this.campaignId}/enriched_table.csv`:this._filePath=`${l}/${this.campaignId}/enriched_table.csv`,this._campaign&&(this._campaign.savePath=this._filePath),yield this.saveCampaign(void 0,!0),o.empty(a);const c=r();n=o.link(c,(()=>{var e,t,i;return this.download(this.dataFrame,null!==(i=null!==(e=this.campaignId)&&void 0!==e?e:null===(t=this._campaign)||void 0===t?void 0:t.name)&&void 0!==i?i:"Molecules")}),A),a.appendChild(n),a.appendChild(t)})))),u=o.button("Cancel",(()=>{o.empty(a),a.appendChild(n),a.appendChild(t)}));o.empty(a),s.addOptions(u),s.addOptions(c),a.appendChild(s.root)}),"Edit file path");t.style.marginLeft="5px";const i=r();let n=o.link(i,(()=>{var e,t,i;return this.download(this.dataFrame,null!==(i=null!==(e=this.campaignId)&&void 0!==e?e:null===(t=this._campaign)||void 0===t?void 0:t.name)&&void 0!==i?i:"Molecules")}),A);const a=o.divH([n,t],{style:{alignItems:"center"}});return a})()},l),{"Number of molecules":(this.dataFrame.rowCount-this._extraStageColsCount).toString(),"Enrichment methods":[this.template.compute.descriptors.enabled?"descriptors":"",...this.template.compute.functions.map((e=>e.name))].filter((e=>e&&""!==e.trim())).join(", ")})}saveCampaign(i,n=!0){var o,a,s,r,l,c,u,d;return Ee(this,void 0,void 0,(function*(){const p=this.campaignId,h=this.template.name,f=this.dataFrame,v=p,g={};f.columns.toList().forEach((e=>g[e.name]=e.semType));const y={name:v,templateName:h,status:null!==(a=null!=i?i:null===(o=this.campaign)||void 0===o?void 0:o.status)&&void 0!==a?a:"In Progress",createDate:null!==(r=null===(s=this.campaign)||void 0===s?void 0:s.createDate)&&void 0!==r?r:M(new Date),campaignFields:null!==(c=null===(l=this.campaign)||void 0===l?void 0:l.campaignFields)&&void 0!==c?c:this.campaignProps,columnSemTypes:g,rowCount:null!==(d=null===(u=f.col(m))||void 0===u?void 0:u.toList().filter((e=>"StageDefiningRow"!==e)).length)&&void 0!==d?d:0,filteredRowCount:f.filter.trueCount,savePath:this._filePath};console.log(this._filePath);const b=t.DataFrame.fromColumns(f.columns.toList().filter((e=>!e.name.startsWith("~")))).toCsv();yield e.dapi.files.writeAsText(this._filePath,b);const w=this._designView.saveLayout();return w?y.layout=w.viewState:e.shell.warning("Layout cound not be saved"),y.template=this.template,yield Fe.files.writeAsText(`Hit Design/campaigns/${p}/campaign.json`,JSON.stringify(y)),n&&e.shell.info("Campaign saved successfully."),this.campaign=y,y}))}}class Se extends t.GridCellRenderer{get name(){return"customGasteigerPNG"}get cellType(){return"customGasteigerPNG"}get defaultHeight(){return 200}get defaultWidth(){return 200}render(e,t,i,n,o,a,s){if(a.gridRow<0||!a.cell.value)return;const r=a.cell.value,l=new Image(n-2,o-2);l.src="data:image/png;base64,"+r,l.onload=function(){e.drawImage(l,t+2,i+2,n-2,o-2)}}}var _e=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};const Fe=new t.Package;function Be(){return _e(this,void 0,void 0,(function*(){const t=e.functions.getCurrentCall();new ge(t)}))}function Oe(){return _e(this,void 0,void 0,(function*(){const t=e.functions.getCurrentCall();new Ne(t)}))}function Pe(){return _e(this,void 0,void 0,(function*(){const t=e.data.demo.molecules(100);return t.name="100 Molecules",t}))}function ke(){return _e(this,void 0,void 0,(function*(){const t=e.data.demo.molecules(5e3);return t.name="5000 Molecules",t}))}function Ve(t){return _e(this,void 0,void 0,(function*(){const i=e.data.demo.molecules(t);return i.name="Variable Molecules number",i}))}function Le(t,i){return _e(this,void 0,void 0,(function*(){e.shell.info(t.rowCount),e.shell.info(i)}))}function je(){return new Se}})(),hittriage=n})();
1
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this.createNewTemplate(),o.setUpdateIndicator(this.root,!1)}))),b);r.addOptions(l),yield s(),Z()(t).empty(),t.appendChild(r.root)}))}checkCampaign(e){return re(this,void 0,void 0,(function*(){const t=location.search,i=new URLSearchParams(t);if(!i.has(a)&&!e)return;const n=null!=e?e:i.get(a);if(!(yield Fe.files.exists(`Hit Triage/campaigns/${n}/campaign.json`)))return;const o=JSON.parse(yield Fe.files.readAsText(`Hit Triage/campaigns/${n}/campaign.json`)),s=JSON.parse(yield Fe.files.readAsText(`Hit Triage/templates/${o.templateName}.json`));return this.app.setTemplate(s,o.filters,n,o.ingest),e&&R(a,e),o}))}getCampaignsTable(){return re(this,void 0,void 0,(function*(){const e=(yield Fe.files.list("Hit Triage/campaigns")).filter((e=>-1===this.deletedCampaigns.indexOf(e.name))),t={};for(const i of e){const e=JSON.parse(yield Fe.files.readAsText(`Hit Triage/campaigns/${i.name}/campaign.json`));t[e.name]=e}const i=Object.values(t).map((e=>({name:e.name,createDate:e.createDate,rowCount:e.rowCount,filtered:e.filteredRowCount,status:e.status}))),n=o.table(i,(e=>[o.link(e.name,(()=>this.setCampaign(e.name)),"",""),e.createDate,e.rowCount,e.filtered,e.status,o.icons.delete((()=>re(this,void 0,void 0,(function*(){o.dialog("Delete campaign").add(o.divText(`Are you sure you want to delete campaign ${e.name}?`)).onOK((()=>re(this,void 0,void 0,(function*(){yield this.deleteCampaign("Hit Triage",e.name),this.deletedCampaigns.push(e.name),yield this.init()})))).show()}))),"Delete campaign")]),["Name","Created","Total","Selected","Status",""]);return n.style.color="var(--grey-5)",n}))}setCampaign(e){return re(this,void 0,void 0,(function*(){const t=yield this.checkCampaign(e);this.app.campaign=t}))}getNewCampaignAccordeon(i,n){return re(this,void 0,void 0,(function*(){o.setUpdateIndicator(n,!0);const{root:a,promise:s,cancelPromise:r}=yield function(i,n){var a,s;return G(this,void 0,void 0,(function*(){const r=o.divText("",{style:{color:"red"}});let c=null;const u=()=>G(this,void 0,void 0,(function*(){try{if(c=d.value,!c)return;if(yield c.meta.detectSemanticTypes(),!c.columns.bySemType(t.SEMTYPE.MOLECULE))return void(r.innerText="No molecules column found");r.innerText=""}catch(e){r.innerText="Error parsing file"}})),d=o.tableInput("Dataframe",null,void 0,u);yield u();const p=o.div([d,r]);0===Object.keys(n).length&&(t.Func.find({tags:[l]}).forEach((e=>{var t;n[null!==(t=e.friendlyName)&&void 0!==t?t:e.name]=e})),(yield e.dapi.queries.include("params,connection").filter("#HitTriageDataSource").list()).forEach((e=>{var t;n[null!==(t=e.friendlyName)&&void 0!==t?t:e.name]=e})));let m=null;const h=()=>G(this,void 0,void 0,(function*(){const e=n[v.value];m=e.prepare();const t=yield m.getEditor();t.classList.remove("ui-form"),f.innerHTML="",f.appendChild(t)})),f=o.div([]),v=o.choiceInput(y,null!==(a=i.queryFunctionName)&&void 0!==a?a:Object.keys(n)[0],Object.keys(n),h);yield h(),i.queryFunctionName&&(null===(s=v.root.getElementsByTagName("select").item(0))||void 0===s||s.setAttribute("disabled","true"));const g=o.div([v,f]);g.style.display="none";const b=o.div([p,g]),C=i.campaignFields.map((e=>e.type===t.SEMTYPE.MOLECULE?Object.assign(Object.assign({},e),{type:"String",semtype:t.SEMTYPE.MOLECULE}):e)).map((e=>t.Property.fromOptions(Object.assign({name:e.name,type:W[e.type],nullable:!e.required},e.semtype?{semType:e.semtype}:{})))),A={},x=C.length?o.input.form(A,C):o.div();x.classList.remove("ui-form"),"File"===i.dataSourceType?(p.style.display="inherit",g.style.display="none"):(p.style.display="none",g.style.display="inherit");const I=o.div([b,...C.length?[x]:[]]),E=o.buttonsInput([]);return I.appendChild(E),{promise:new Promise((t=>{const a=()=>G(this,void 0,void 0,(function*(){if("File"===i.dataSourceType){if(!c)return void e.shell.error("No file selected");const i=c;i.name=c.name,t({df:i,type:"File",campaignProps:A})}else{const i=n[v.value];if(!i)return void e.shell.error("No function selected");const o={};Object.entries(m.inputs).forEach((([e,t])=>{o[e]=t}));const a=yield i.apply(o);t({df:a,type:"Query",campaignProps:A})}})),s=o.bigButton(w,(()=>a()));E.appendChild(s)})),root:I,cancelPromise:new Promise((e=>{o.button(T,(()=>e()))}))}}))}(i,this.dataSourceFunctionsMap);return o.setUpdateIndicator(n,!1),s.then((e=>re(this,void 0,void 0,(function*(){this.app.dataFrame=e.df,this.app._fileInputType=e.type,yield this.app.setTemplate(i),this.app.campaignProps=e.campaignProps,this.app.saveCampaign(void 0,!1)})))),r.then((()=>{this.init()})),a}))}createNewTemplate(){return re(this,void 0,void 0,(function*(){const i=yield ee(this.app,this.dataSourceFunctionsMap),n=new t.ViewBase,o=e.shell.v;n.name="New Template",n.root.appendChild(i.root),n.parentCall=this.app.parentCall,e.shell.addView(n),n.path=new URL(this.app.baseUrl).pathname+"/new-template",n.parentView=o;const{sub:a}=U(e.shell.v,"Hit Triage",b,(()=>{e.shell.v=o,n.close()}));i.template.then((t=>re(this,void 0,void 0,(function*(){yield this.init(t),n.close(),$(n),e.shell.v=o,a.unsubscribe()})))),i.cancelPromise.then((()=>{a.unsubscribe(),n.close(),e.shell.v=o}))}))}}class ce extends ne{constructor(e){super(e),this.name="Submit"}render(){return o.empty(this.root),o.divV([o.h1("Summary"),o.div([o.tableFromMap(this.app.getSummary())])])}onActivated(){this.render()}submit(){var i,n,o,a,s;return n=this,o=void 0,s=function*(){const n=null===(i=this.app.template)||void 0===i?void 0:i.submit;if(!n)return;const o=t.Func.find({name:n.fName,package:n.package})[0];if(!o)return void e.shell.error(`Function ${n.fName} not found.`);const a=t.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield o.apply({df:a,molecules:this.app.molColName}),this.app.campaign&&(this.app.campaign.status="Submitted"),this.app.saveCampaign("Submitted"),e.shell.info("Submitted successfully.")},new((a=void 0)||(a=Promise))((function(e,t){function i(e){try{l(s.next(e))}catch(e){t(e)}}function r(e){try{l(s.throw(e))}catch(e){t(e)}}function l(t){var n;t.done?e(t.value):(n=t.value,n instanceof a?n:new a((function(e){e(n)}))).then(i,r)}l((s=s.apply(n,o||[])).next())}))}}var ue=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};class de{constructor(i){this.parentCall=i,this.resetBaseUrl(),this.computeFunctions=new Promise((i=>ue(this,void 0,void 0,(function*(){const n=t.Func.find({tags:[r]}),o=yield e.dapi.scripts.include("params").filter("#HitTriageFunction").list(),a=yield e.dapi.queries.include("params,connection").filter("#HitTriageFunction").list();i({functions:n,scripts:o,queries:a})}))))}resetBaseUrl(){const e=window.location.href,t=new URL(e);this.baseUrl=t.origin+t.pathname}getFilterType(e){const i=this.dataFrame.col(e);return(null==i?void 0:i.semType)===t.SEMTYPE.MOLECULE?t.FILTER_TYPE.SUBSTRUCTURE:(null==i?void 0:i.type)===t.COLUMN_TYPE.BOOL?t.FILTER_TYPE.BOOL_COLUMNS:(null==i?void 0:i.type)===t.COLUMN_TYPE.STRING?t.FILTER_TYPE.CATEGORICAL:t.FILTER_TYPE.HISTOGRAM}download(e,i,n=!1){const o=document.createElement("a"),a=t.DataFrame.fromColumns(e.columns.toList().filter((e=>!e.name.startsWith("~")))).toCsv({filteredRowsOnly:n});o.setAttribute("href","data:text/plain;charset=utf-8,"+encodeURIComponent(a)),o.setAttribute("download",i+".csv"),o.click()}getNewCampaignName(e,t){return ue(this,void 0,void 0,(function*(){const i=(yield Fe.files.list(e)).map((e=>e.name)).filter((e=>e.startsWith(t)));if(0===i.length)return t+"-1";const n=i.map((e=>e.split("-")[1])).filter(Boolean).map((e=>parseInt(e,10))).sort();return t+"-"+(n[n.length-1]+1).toString()}))}setBaseUrl(){const e=document.title;if(history.replaceState){const t={Title:e,Url:this.baseUrl};history.replaceState(t,t.Title,t.Url)}}}var pe=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))},me=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};function he(e){let t=0;if(e.length>1)for(const i of e.toList()){if(!i||!i.startsWith(h[0])||i.length!==h.length)continue;const e=parseInt(i.substring(1));isNaN(e)||(t=Math.max(e,t))}return`V${"".concat(...new Array(h.length-1-(t+1).toString().length).fill("0"))}${t+1}`}function fe(i,n,o){var a,s;return me(this,void 0,void 0,(function*(){const r=n.col(o);if(!r)throw new Error("There is no molecule column in dataframe");for(let t=0;t<r.length;t++){if(r.isNone(t))continue;const i=r.get(t);if(!i)continue;const n=e.chem.convert(i,e.chem.Notation.Unknown,e.chem.Notation.Smiles);r.set(t,n,!1)}i.descriptors&&i.descriptors.length>0&&(yield e.chem.descriptors(n,o,i.descriptors));for(const e of Object.keys(i.externals)){const a=i.externals[e],s=t.Func.find({package:e.split(":")[0],name:e.split(":")[1]})[0],r=s.inputs[0].name,l=s.inputs[1].name;a&&(yield s.apply(Object.assign(Object.assign({},a),{[r]:n,[l]:o})))}for(const t of Object.keys(null!==(a=i.scripts)&&void 0!==a?a:{})){const a=i.scripts[t];if(a){const i=t.split(":")[2];if(!i)continue;try{const t=yield e.dapi.scripts.find(i);if(!t)continue;const s=t.inputs[0].name,r=t.inputs[1].name;yield t.apply(Object.assign(Object.assign({},a),{[s]:n,[r]:o}))}catch(e){console.error(e)}}}for(const t of Object.keys(null!==(s=i.queries)&&void 0!==s?s:{})){const a=i.queries[t];if(a){const i=t.split(":")[2];if(!i)continue;try{const t=yield e.dapi.queries.find(i);if(!t)continue;const s=t.inputs[0].name,r=n.col(o).toList(),l=yield t.apply(Object.assign(Object.assign({},a),{[s]:r}));l&&(yield Y(n,o,l))}catch(e){console.error(e)}}}}))}var ve=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};class ge extends de{constructor(i){super(i),this._filterViewName="Hit triage | Pick",this._filterDescriptions=[],this.campaignProps={},this._pickViewPromise=null,this._infoView=new le(this),this.multiView=new t.MultiView({viewFactories:{[this._infoView.name]:()=>this._infoView}}),this.multiView.tabs.onTabChanged.subscribe((e=>{this.multiView.currentView instanceof ne&&this.multiView.currentView.onActivated()})),this.multiView.parentCall=i,e.shell.addView(this.multiView),e.events.onCurrentViewChanged.subscribe((()=>{var t,i,n,o;try{(null===(t=e.shell.v)||void 0===t?void 0:t.name)===this.currentPickViewId&&(e.shell.windows.showHelp=!1,this.setBaseUrl(),R(a,null!==(o=null!==(i=this._campaignId)&&void 0!==i?i:null===(n=this._campaign)||void 0===n?void 0:n.name)&&void 0!==o?o:""))}catch(e){console.error(e)}}))}setTemplate(i,n,o,s){var r,l,c,u,d,p,m,h,f,v,g,y,b,w;return ve(this,void 0,void 0,(function*(){if((null===(r=this._pickView)||void 0===r?void 0:r.dataFrame)&&e.shell.closeTable(null===(l=this._pickView)||void 0===l?void 0:l.dataFrame),this._pickView=void 0,o?s&&(this._fileInputType=s.type,"File"===s.type?this.dataFrame=yield e.dapi.files.readCsv(s.query):this.dataFrame=yield e.functions.call(s.query)):(o=yield this.getNewCampaignName("Hit Triage/campaigns",i.key),R(a,o)),!this.dataFrame)return void console.error("Dataframe is empty.");if((null===(c=this._campaign)||void 0===c?void 0:c.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach((([e,t])=>{const i=this.dataFrame.columns.byName(e);i&&(i.semType=t)})),yield this.dataFrame.meta.detectSemanticTypes(),this._molColName=null!==(d=null===(u=this.dataFrame.columns.bySemType(t.SEMTYPE.MOLECULE))||void 0===u?void 0:u.name)&&void 0!==d?d:void 0,this._dfName=null!==(p=this.dataFrame.name)&&void 0!==p?p:null==s?void 0:s.query,this.dataFrame.name=null!==(h=null!==(m=this._dfName)&&void 0!==m?m:this.dataFrame.name)&&void 0!==h?h:"Molecules",this._campaignId=o,this.template=(null===(f=this.campaign)||void 0===f?void 0:f.template)?Object.assign(Object.assign({},this.campaign.template),{dataSourceType:i.dataSourceType,queryFunctionName:i.queryFunctionName}):i,this._campaignFilters=n,!n){const e={},t={},n={};i.compute.functions.forEach((t=>{const i=`${t.package}:${t.name}`;e[i]=t.args})),null===(v=i.compute.scripts)||void 0===v||v.forEach((e=>{const i=`HTScript:${e.name}:${e.id}`;t[i]=e.args})),null===(g=i.compute.queries)||void 0===g||g.forEach((e=>{const t=`HTQuery:${e.name}:${e.id}`;n[t]=e.args})),yield fe({descriptors:i.compute.descriptors.enabled?i.compute.descriptors.args:[],externals:e,scripts:t,queries:n},this.dataFrame,this._molColName)}const C=e.shell.v,A=e.shell.addView(this.pickView);this.currentPickViewId=A.name,this._submitView=new ce(this),this.setBaseUrl(),R(a,null!==(w=null!==(y=this._campaignId)&&void 0!==y?y:null===(b=this._campaign)||void 0===b?void 0:b.name)&&void 0!==w?w:"");const T=A;setTimeout((()=>{this._pickViewPromise&&this._pickViewPromise.then((()=>{const{sub:t}=U(T,"Hit Triage","Pick",(()=>{e.shell.v=C,T.close(),t.unsubscribe()}))}))}),300),e.shell.windows.showHelp=!1}))}get filterSettings(){return this._campaignFilters}get campaignId(){return this._campaignId}get pickView(){return this._pickView=this.getFilterView()}get molColName(){var e,i,n;return null!==(e=this._molColName)&&void 0!==e?e:this._molColName=null===(n=null===(i=this.dataFrame)||void 0===i?void 0:i.columns.bySemType(t.SEMTYPE.MOLECULE))||void 0===n?void 0:n.name}get fileInputType(){return this._fileInputType}get campaign(){return this._campaign}set campaign(e){this._campaign=e}getFilterView(){let e=null;this._pickViewPromise=new Promise((t=>{e=t})),this.dataFrame.col(u)||this.dataFrame.columns.addNewBool(u).init(!1);const i=t.TableView.create(this.dataFrame,!1),n=i.getRibbonPanels(),a=o.iconFA("wrench",(()=>ve(this,void 0,void 0,(function*(){z(this,(e=>ve(this,void 0,void 0,(function*(){var t,i,n,o,a,s,r;const l=this.template.compute.descriptors.args,c=this.template.compute.functions,u=null!==(t=this.template.compute.scripts)&&void 0!==t?t:[],d=null!==(i=this.template.compute.queries)&&void 0!==i?i:[],p=e.descriptors,m={descriptors:{enabled:!!(null===(n=null==e?void 0:e.descriptors)||void 0===n?void 0:n.length),args:null!==(o=null==e?void 0:e.descriptors)&&void 0!==o?o:[]},functions:Object.entries(null!==(a=null==e?void 0:e.externals)&&void 0!==a?a:{}).map((([e,t])=>{const i=e.split(":");return{name:i[1],package:i[0],args:t}})),scripts:Object.entries(null!==(s=null==e?void 0:e.scripts)&&void 0!==s?s:{}).filter((([e,t])=>e.startsWith(f)&&3===e.split(":").length)).map((([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}})),queries:Object.entries(null!==(r=null==e?void 0:e.queries)&&void 0!==r?r:{}).filter((([e,t])=>e.startsWith(v)&&3===e.split(":").length)).map((([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}}))};this.template.compute=m;const h=p.filter((e=>!l.includes(e))),g=m.functions.filter((e=>{if(!c.some((t=>t.name===e.name&&t.package===e.package)))return!0;const t=c.find((t=>t.name===e.name&&t.package===e.package));return!Object.entries(e.args).every((([e,i])=>t.args[e]===i))})),y=m.scripts.filter((e=>{if(!u.some((t=>t.id===e.id)))return!0;const t=u.find((t=>t.id===e.id));return!Object.entries(e.args).every((([e,i])=>t.args[e]===i))})),b=m.queries.filter((e=>{if(!d.some((t=>t.id===e.id)))return!0;const t=d.find((t=>t.id===e.id));return!Object.entries(e.args).every((([e,i])=>t.args[e]===i))})),w={};g.forEach((e=>{const t=`${e.package}:${e.name}`;w[t]=e.args}));const C={};y.forEach((e=>{const t=`HTScript:${e.name}:${e.id}`;C[t]=e.args}));const A={};b.forEach((e=>{const t=`HTQuery:${e.name}:${e.id}`;A[t]=e.args})),yield fe({descriptors:h,externals:w,scripts:C,queries:A},this.dataFrame,this._molColName),this.saveCampaign("In Progress",!1)}))),(()=>null),this.template,!0)}))),"Calculate additional properties"),s=o.bigButton("Submit",(()=>{var e;const t=null===(e=this._submitView)||void 0===e?void 0:e.render();if(t){const e=o.dialog("Submit");e.add(t),e.addButton("Save",(()=>{this.saveCampaign(),e.close()})),e.addButton("Submit",(()=>{var t;null===(t=this._submitView)||void 0===t||t.submit(),e.close()})),e.show()}}));s.classList.add("hit-design-submit-button");const r=q(n);return n.push([a,...r?[]:[s]]),i.setRibbonPanels(n),i.name=this._filterViewName,setTimeout((()=>ve(this,void 0,void 0,(function*(){var n;i._onAdded(),yield new Promise((e=>setTimeout(e,1e3)));const o=i.filters(this._campaignFilters?{filters:this._campaignFilters}:void 0);if(null===(n=this._campaign)||void 0===n?void 0:n.layout)try{const e=t.ViewLayout.fromViewState(this._campaign.layout);i.loadLayout(e)}catch(e){console.error(e)}i.dataFrame.onFilterChanged.subscribe((e=>{this._filterDescriptions=Array.from(i.dataFrame.rows.filters),this._campaignFilters=o.getOptions().look.filters})),setTimeout((()=>{this._filterDescriptions=Array.from(i.dataFrame.rows.filters),this._campaignFilters=o.getOptions().look.filters}),300),e&&e()}))),300),i.parentCall=this.parentCall,i}getSummary(){var e,t,i,n,a,s,r;const l=null!==(t=null===(e=this.campaign)||void 0===e?void 0:e.campaignFields)&&void 0!==t?t:this.campaignProps;return Object.assign(Object.assign({Template:null!==(n=null===(i=this.template)||void 0===i?void 0:i.name)&&void 0!==n?n:"Molecules","File path":o.divH([o.link(null!==(a=this._dfName)&&void 0!==a?a:"-",(()=>this.download(this.dataFrame,"molecules")),A)],{style:{alignItems:"center"}})},l),{"Number of molecules":this.dataFrame.rowCount.toString(),"Enrichment methods":[this.template.compute.descriptors.enabled?"descriptors":"",...this.template.compute.functions.map((e=>e.name))].filter((e=>e&&""!==e.trim())).join(", "),Filters:this._filterDescriptions.join(", "),"Result Molecules":o.divH([o.link(null!==(r=null===(s=this.dataFrame)||void 0===s?void 0:s.filter.trueCount.toString())&&void 0!==r?r:"0",(()=>{this.download(this.dataFrame,"hits",!0)}),A)],{style:{alignItems:"center"}})})}saveCampaign(i,n=!0){var a,s,r,l,c,u;return ve(this,void 0,void 0,(function*(){const d=this.campaignId,p=this.filterSettings,m=this.template.name,h=this.dataFrame,f=`System:AppData/HitTriage/Hit Triage/campaigns/${d}/`,v=null!=d?d:yield function(e){return pe(this,void 0,void 0,(function*(){return new Promise((t=>pe(this,void 0,void 0,(function*(){const i=o.stringInput("Campaign name","");o.dialog("Save Campaign").add(o.div(i.root)).onOK((function(){i.value&&""!==i.value?t(i.value):t(e)})).show()}))))}))}(d),g={};h.columns.toList().forEach((e=>g[e.name]=e.semType));const y={name:v,templateName:m,filters:null!=p?p:{},ingest:{type:"File",query:`${f}enriched_table.csv`,molColName:this.molColName},status:null!==(s=null!=i?i:null===(a=this.campaign)||void 0===a?void 0:a.status)&&void 0!==s?s:"In Progress",createDate:null!==(l=null===(r=this.campaign)||void 0===r?void 0:r.createDate)&&void 0!==l?l:M(new Date),campaignFields:null!==(u=null===(c=this.campaign)||void 0===c?void 0:c.campaignFields)&&void 0!==u?u:this.campaignProps,columnSemTypes:g,rowCount:h.rowCount,filteredRowCount:h.filter.trueCount,template:this.template};this.campaign=y;const b=t.DataFrame.fromColumns(h.columns.toList().filter((e=>!e.name.startsWith("~")))).toCsv();yield Fe.files.writeAsText(`Hit Triage/campaigns/${d}/enriched_table.csv`,b);const w=this._pickView.saveLayout();w?y.layout=w.viewState:e.shell.warning("Layout cound not be saved"),yield Fe.files.writeAsText(`Hit Triage/campaigns/${d}/campaign.json`,JSON.stringify(y)),n&&e.shell.info("Campaign saved successfully.")}))}}var ye=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};function be(i,n){var a,s,l,u,d,p,m,h,g,y,b;return ye(this,void 0,void 0,(function*(){const w=t.Func.find({tags:[r]}),A=yield Fe.files.list("Hit Design/templates");let x=!1,I=!1;const E=A.map((e=>e.name.slice(0,-5))),N=[];for(const e of A)try{const t=JSON.parse(yield Fe.files.readAsText(e));N.push(t.key)}catch(e){console.error(e)}const S=t.Func.find({tags:[c]}),_={};S.forEach((e=>{var t;_[null!==(t=e.friendlyName)&&void 0!==t?t:e.name]=e}));const F=o.choiceInput("Submit function",null,[null,...Object.keys(_)]);F.nullable=!0,F.value=null!==(s=null===(a=null==n?void 0:n.submit)||void 0===a?void 0:a.fName)&&void 0!==s?s:null,F.setTooltip("Select function to be called upon submitting");const B=o.divText("Template name is empty or already exists",{classes:"hit-triage-error-div"}),O=o.divText("Template key is empty or already exists",{classes:"hit-triage-error-div"});function P(){var e,t,i,n;if(""===k.value||E.includes(null!==(t=null===(e=k.value)||void 0===e?void 0:e.trim())&&void 0!==t?t:"")){const e=null!==(i=k.input.offsetLeft)&&void 0!==i?i:0,t=null!==(n=k.input.offsetWidth)&&void 0!==n?n:0;B.style.marginLeft=`${e}px`,B.style.width=`${t}px`,B.style.opacity="100%",B.style.borderTop="1px solid red",x=!0}else B.style.borderTop="none",B.style.opacity="0%",x=!1}const k=o.stringInput("Name",null!==(l=null==n?void 0:n.name)&&void 0!==l?l:"",P);function V(){var e,t,i,n;if(""===L.value||N.includes(null!==(t=null===(e=L.value)||void 0===e?void 0:e.trim())&&void 0!==t?t:"")){const e=null!==(i=L.input.offsetLeft)&&void 0!==i?i:0,t=null!==(n=L.input.offsetWidth)&&void 0!==n?n:0;O.style.marginLeft=`${e}px`,O.style.width=`${t}px`,O.style.borderTop="1px solid red",O.style.opacity="100%",I=!0}else O.style.opacity="0%",O.style.borderTop="none",I=!1}const L=o.stringInput("Key",null!==(u=null==n?void 0:n.key)&&void 0!==u?u:"",V);L.setTooltip("Template key used for campaign prefix"),k.setTooltip("Template name"),k.root.style.borderBottom="none",L.root.style.borderBottom="none",B.style.opacity="0%",O.style.opacity="0%";const j={Descriptors:"Descriptors"};w.forEach((e=>{var t;j[null!==(t=e.friendlyName)&&void 0!==t?t:e.name]=`${e.package.name}:${e.name}`}));let D=null;const H={compute:{descriptors:{enabled:!0,args:null!==(m=null===(p=null===(d=null==n?void 0:n.compute)||void 0===d?void 0:d.descriptors)||void 0===p?void 0:p.args)&&void 0!==m?m:[]},functions:null!==(g=null===(h=null==n?void 0:n.compute)||void 0===h?void 0:h.functions)&&void 0!==g?g:[]}},M=yield z(i,(e=>{D=e}),(()=>null),H,!1);M.root.classList.add("hit-triage-new-template-functions-input");const R=te(null==n?void 0:n.campaignFields),U=function(e){const i=[t.Property.fromOptions({name:"Name",type:t.TYPE.STRING})],n=new K(i,e?e.map((e=>({Name:e}))):void 0,{horizontalInputNames:!0});let o={};return n.onItemAdded.subscribe((e=>{o=null!=e?e:{}})),n.onAddingItemChanged.subscribe((e=>{e&&(o=e.item)})),{getFields:function(){const e=n.items.filter((e=>e.Name)).map((e=>e.Name));return o.Name&&""!==o.Name&&e.push(o.Name),e},fieldsDiv:n.root}}(null==n?void 0:n.stages),$=o.divV([o.divV([k,B]),o.divV([L,O]),R.fieldsDiv]),q=o.h2("Stages");o.tooltip.bind(q,'Define Stages for designed molecules. For example, "Design", "Synthesis", "Test", etc.');const Y=o.h2("Compute");o.tooltip.bind(Y,'Define functions to be calculated for each molecule. For example, "Descriptors", "Descriptors:Descriptors", etc.');const W=o.div([o.h2("Details"),$,q,U.fieldsDiv,Y,M.root,o.h2("Submit"),F.root],"ui-form"),G=o.buttonsInput([]);W.appendChild(G);const J=null!==(b=null===(y=G.getElementsByClassName("ui-input-editor"))||void 0===y?void 0:y[0])&&void 0!==b?b:G,Z=new Promise((e=>{const t=o.button(T,(()=>e()));J.appendChild(t)})),Q=new Promise((t=>{const i=o.bigButton(C,(()=>function(){var i,n,o,a,s;return ye(this,void 0,void 0,(function*(){if(P(),V(),M.okProxy(),x||!k.value||""===k.value)return void e.shell.error("Template name is empty or already exists");if(I||!L.value||""===L.value)return void e.shell.error("Template key is empty or already exists");const r=F.value?_[F.value]:void 0,l=Object.assign({name:k.value,key:L.value,campaignFields:R.getFields(),stages:U.getFields(),compute:{descriptors:{enabled:!!(null===(i=null==D?void 0:D.descriptors)||void 0===i?void 0:i.length),args:null!==(n=null==D?void 0:D.descriptors)&&void 0!==n?n:[]},functions:Object.entries(null!==(o=null==D?void 0:D.externals)&&void 0!==o?o:{}).map((([e,t])=>{const i=e.split(":");return{name:i[1],package:i[0],args:t}})),scripts:Object.entries(null!==(a=null==D?void 0:D.scripts)&&void 0!==a?a:{}).filter((([e,t])=>e.startsWith(f)&&3===e.split(":").length)).map((([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}})),queries:Object.entries(null!==(s=null==D?void 0:D.queries)&&void 0!==s?s:{}).filter((([e,t])=>e.startsWith(v)&&3===e.split(":").length)).map((([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}}))}},r?{submit:{fName:r.name,package:r.package.name}}:{});var c;c=l,Fe.files.writeAsText(`Hit Design/templates/${c.name}.json`,JSON.stringify(c)),e.shell.info("Template created successfully"),t(l)}))}()));J.appendChild(i)}));return{root:W,template:Q,cancelPromise:Z}}))}var we=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};class Ce extends ne{constructor(t){super(t),this.deletedCampaigns=[],this.name="Hit Design",e.shell.windows.showHelp=!0,e.shell.windows.help.showHelp(Fe.webRoot+"README_HD.md"),this.checkCampaign().then((e=>{this.app.campaign=e,this.init()}))}onActivated(){e.shell.windows.showHelp=!0,e.shell.windows.help.showHelp(Fe.webRoot+"README_HD.md")}init(e){return we(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0);try{const t=o.h1(x),i=o.h1(I,{style:{marginLeft:"10px"}}),n=se.appHeader({iconPath:Fe.webRoot+"/images/icons/hit-design-icon.png",learnMoreUrl:"https://github.com/datagrok-ai/public/blob/master/packages/HitTriage/README_HD.md",description:"- Configure your own workflow using the template editor\n- Sketch molecules in the molecular spreadsheet\n- Annotate and share ideas with the team\n- Calculate different molecular properties\n- Save campaigns and continue from where you left off\n- Submit final selection to the function of your choice"}),a=o.div(),s=o.divH([]),r=o.div([s,a],"ui-form"),l=yield this.getCampaignsTable();Z()(this.root).empty(),this.root.appendChild(o.div([o.divV([n,t],{style:{marginLeft:"10px"}}),l,i,r])),yield this.startNewCampaign(a,s,e),this.app.resetBaseUrl()}finally{o.setUpdateIndicator(this.root,!1)}}))}startNewCampaign(e,t,i){var n;return we(this,void 0,void 0,(function*(){const a=(yield Fe.files.list("Hit Design/templates")).filter((e=>e.name.endsWith(".json"))).map((e=>e.name.slice(0,-5)));i&&!a.includes(i.name)&&a.push(i.name);let s=null;const r=()=>we(this,void 0,void 0,(function*(){const t=l.value,n=i&&i.name===t?i:JSON.parse(yield Fe.files.readAsText("Hit Design/templates/"+t+".json"));s=n;const o=yield this.getNewCampaignAccordeon(n);Z()(e).empty(),e.appendChild(o)})),l=o.choiceInput("Template",null!==(n=null==i?void 0:i.name)&&void 0!==n?n:a[0],a,(()=>we(this,void 0,void 0,(function*(){yield r()}))));l.root.style.width="100%";const c=o.icons.add((()=>{this.createNewTemplate()}),b),u=o.icons.copy((()=>{s&&this.createNewTemplate(s)}),"Clone template");c.style.color="#2083d5",l.addOptions(u),l.addOptions(c),yield r(),Z()(t).empty(),t.appendChild(l.root)}))}checkCampaign(e){var t;return we(this,void 0,void 0,(function*(){const i=location.search,n=new URLSearchParams(i);if(!n.has(s)&&!e)return;const o=null!=e?e:n.get(s);if(!(yield Fe.files.exists(`Hit Design/campaigns/${o}/campaign.json`)))return;const a=JSON.parse(yield Fe.files.readAsText(`Hit Design/campaigns/${o}/campaign.json`));a&&(this.app.campaign=a);const r=null!==(t=a.template)&&void 0!==t?t:JSON.parse(yield Fe.files.readAsText(`Hit Design/templates/${a.templateName}.json`));return yield this.app.setTemplate(r,o),e&&R(s,e),a.template=r,a}))}getCampaignsTable(){return we(this,void 0,void 0,(function*(){const e=(yield Fe.files.list("Hit Design/campaigns")).filter((e=>-1===this.deletedCampaigns.indexOf(e.name))),t={};for(const i of e){const e=JSON.parse(yield Fe.files.readAsText(`Hit Design/campaigns/${i.name}/campaign.json`));t[e.name]=e}const i=o.table(Object.values(t),(e=>[o.link(e.name,(()=>this.setCampaign(e.name)),"",""),e.createDate,e.rowCount,e.status,o.icons.delete((()=>we(this,void 0,void 0,(function*(){o.dialog("Delete campaign").add(o.divText(`Are you sure you want to delete campaign ${e.name}?`)).onOK((()=>we(this,void 0,void 0,(function*(){yield this.deleteCampaign("Hit Design",e.name),this.deletedCampaigns.push(e.name),yield this.init()})))).show()}))),"Delete campaign")]),["Name","Created","Molecules","Status",""]);return i.style.color="var(--grey-5)",i.style.marginLeft="24px",i}))}setCampaign(e){return we(this,void 0,void 0,(function*(){const t=yield this.checkCampaign(e);this.app.campaign=t}))}getNewCampaignAccordeon(i){return we(this,void 0,void 0,(function*(){const{root:n,promise:a,cancelPromise:s}=function(i){var n,a;const s=t.DataFrame.create(1),r=s.columns.addNew(p,t.TYPE.STRING);r.semType=t.SEMTYPE.MOLECULE,r.setTag(t.TAGS.UNITS,t.UNITS.Molecule.SMILES),r.set(0,null),(null===(n=null==i?void 0:i.stages)||void 0===n?void 0:n.length)>0&&s.columns.addNew(d,t.TYPE.STRING).set(0,i.stages[0]);const l=s.columns.addNew(m,t.TYPE.STRING);l.set(0,he(l));const c=i.campaignFields.map((e=>e.type===t.SEMTYPE.MOLECULE?Object.assign(Object.assign({},e),{type:"String",semtype:t.SEMTYPE.MOLECULE}):e)).map((e=>t.Property.fromOptions(Object.assign({name:e.name,type:W[e.type],nullable:!e.required},e.semtype?{semType:e.semtype}:{})))),u={},h=o.input.form(u,c);h.classList.remove("ui-form");const f=o.div([...(null===(a=i.campaignFields)||void 0===a||a.length,[]),h]),v=o.buttonsInput([]);return f.appendChild(v),{promise:new Promise((t=>{const n=o.bigButton(w,(()=>{for(const t of i.campaignFields)if(t.required&&(!u[t.name]||""===u[t.name]))return void e.shell.error(`Field '${t.name}' is required`);t({df:s,campaignProps:u})}));v.appendChild(n)})),root:f,cancelPromise:new Promise((e=>{o.button(T,(()=>e()))}))}}(i);return a.then((e=>we(this,void 0,void 0,(function*(){this.app.dataFrame=e.df,yield this.app.setTemplate(i),this.app.campaignProps=e.campaignProps,this.app.saveCampaign(void 0,!1)})))),s.then((()=>{this.init()})),n}))}createNewTemplate(i){return we(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0);try{const n=yield be(this.app,i),a=new t.ViewBase,s=e.shell.v;a.name="New Template",a.root.appendChild(n.root),a.parentCall=this.app.parentCall,e.shell.addView(a),a.path=new URL(this.app.baseUrl).pathname+"/new-template";const{sub:r}=U(a,"Hit Design",b,(()=>we(this,void 0,void 0,(function*(){e.shell.v=s,a.close()}))));n.template.then((t=>we(this,void 0,void 0,(function*(){yield this.init(t),a.close(),$(a),e.shell.v=s,r.unsubscribe()})))),n.cancelPromise.then((()=>we(this,void 0,void 0,(function*(){r.unsubscribe(),a.close(),e.shell.v=s}))))}finally{o.setUpdateIndicator(this.root,!1)}}))}}class Ae extends ne{constructor(e){super(e),this.name="Submit"}render(){return o.empty(this.root),o.divV([o.h1("Summary"),o.div([o.tableFromMap(this.app.getSummary())])])}onActivated(){this.render()}submit(){var i,n,o,a,s;return n=this,o=void 0,s=function*(){const n=null===(i=this.app.template)||void 0===i?void 0:i.submit;if(!n)return;const o=t.Func.find({name:n.fName,package:n.package})[0];if(!o)return void e.shell.error(`Function ${n.fName} not found.`);const a=t.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield o.apply({df:a,molecules:this.app.molColName}),this.app.campaign&&(this.app.campaign.status="Submitted"),this.app.saveCampaign("Submitted"),e.shell.info("Submitted successfully.")},new((a=void 0)||(a=Promise))((function(e,t){function i(e){try{l(s.next(e))}catch(e){t(e)}}function r(e){try{l(s.throw(e))}catch(e){t(e)}}function l(t){var n;t.done?e(t.value):(n=t.value,n instanceof a?n:new a((function(e){e(n)}))).then(i,r)}l((s=s.apply(n,o||[])).next())}))}}var Te=i(143),xe={};xe.styleTagTransform=j(),xe.setAttributes=P(),xe.insert=B().bind(null,"head"),xe.domAPI=_(),xe.insertStyleElement=V(),N()(Te.Z,xe),Te.Z&&Te.Z.locals&&Te.Z.locals;class Ie extends ne{constructor(e){super(e),this.v=null,this.name="Progress Tracker"}render(){return i=this,n=void 0,s=function*(){return new Promise((i=>{var n,a;o.empty(this.root),this.app.dataFrame.columns.names().forEach((e=>{e.startsWith("~")&&this.app.dataFrame.columns.remove(e)})),this.v=t.Viewer.fromType(t.VIEWER.TILE_VIEWER,this.app.dataFrame,{lanesColumnName:d,lanes:null!==(a=null===(n=this.app.template)||void 0===n?void 0:n.stages)&&void 0!==a?a:[]}),this.root.appendChild(this.v.root),this.v.root.style.height="100%",this.v.root.style.width="100%",setTimeout((()=>{var t,n,a;null===(n=null===(t=this.v)||void 0===t?void 0:t.view)||void 0===n||n._onAdded();const s=null===(a=e.shell.v)||void 0===a?void 0:a.getRibbonPanels();if(s){if(q(s))return void i();const t=o.bigButton("Design view",(()=>{const t=e.shell.view(this.app.designViewName);t&&(e.shell.v=t)})),n=o.bigButton("Submit",(()=>{var e;const t=null===(e=this.app._submitView)||void 0===e?void 0:e.render();if(t){const e=o.dialog("Submit");e.add(t),e.addButton("Save",(()=>{this.app.saveCampaign(),e.close()})),e.addButton("Submit",(()=>{var t;null===(t=this.app._submitView)||void 0===t||t.submit(),e.close()})),e.show()}}));n.classList.add("hit-design-submit-button"),s.push([t,n]),e.shell.v.setRibbonPanels(s)}i()}),5)}))},new((a=void 0)||(a=Promise))((function(e,t){function o(e){try{l(s.next(e))}catch(e){t(e)}}function r(e){try{l(s.throw(e))}catch(e){t(e)}}function l(t){var i;t.done?e(t.value):(i=t.value,i instanceof a?i:new a((function(e){e(i)}))).then(o,r)}l((s=s.apply(i,n||[])).next())}));var i,n,a,s}onActivated(){this.render()}destroy(){var e;null===(e=this.v)||void 0===e||e.detach()}}var Ee=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};class Ne extends de{constructor(i){super(i),this._tilesViewTab=null,this._designViewName="Design",this._filePath="System.AppData/HitTriage/Hit Design/campaigns",this._molColName=p,this.campaignProps={},this.processedValues=[],this._extraStageColsCount=0,this._infoView=new Ce(this),this.multiView=new t.MultiView({viewFactories:{[this._infoView.name]:()=>this._infoView}}),this.multiView.tabs.onTabChanged.subscribe((e=>{this.multiView.currentView instanceof ne&&this.multiView.currentView.onActivated()})),this.multiView.parentCall=i,this.mainView=e.shell.addView(this.multiView),e.events.onCurrentViewChanged.subscribe((()=>Ee(this,void 0,void 0,(function*(){var t,i,n,o,s,r,l,c,u;try{if((null===(t=e.shell.v)||void 0===t?void 0:t.name)===this.currentDesignViewId||(null===(i=e.shell.v)||void 0===i?void 0:i.name)===this.currentTilesViewId){e.shell.windows.showHelp=!1,this.setBaseUrl(),R(a,null!==(s=null!==(n=this._campaignId)&&void 0!==n?n:null===(o=this._campaign)||void 0===o?void 0:o.name)&&void 0!==s?s:""),(null===(r=e.shell.v)||void 0===r?void 0:r.name)===this.currentTilesViewId?yield null===(l=this._tilesView)||void 0===l?void 0:l.render():null===(c=this._tilesView)||void 0===c||c.destroy();const{sub:t}=U(e.shell.v,"Hit Design",null===(u=e.shell.v)||void 0===u?void 0:u.name,(()=>{var i,n;e.shell.v=this.mainView,null===(i=this._tilesView)||void 0===i||i.close(),null===(n=this._designView)||void 0===n||n.close(),this._infoView.init(),t.unsubscribe()}))}}catch(e){console.error(e)}}))))}setTemplate(i,n){var o,r,l,c,u,d,m,h,f,v,g,y;return Ee(this,void 0,void 0,(function*(){if(n){const t="System.AppData/HitTriage/Hit Design/campaigns";this._filePath=null!==(l=null===(r=this.campaign)||void 0===r?void 0:r.savePath)&&void 0!==l?l:`${t}/${n}/enriched_table.csv`,this.dataFrame=yield e.dapi.files.readCsv(this._filePath),(null===(c=this._campaign)||void 0===c?void 0:c.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach((([e,t])=>{const i=this.dataFrame.columns.byName(e);i&&t&&(i.semType=t)}))}else(null===(o=this._designView)||void 0===o?void 0:o.dataFrame)&&e.shell.closeTable(this._designView.dataFrame),this._designView=void 0,n=yield this.getNewCampaignName("Hit Design/campaigns",i.key),R(s,n),this._filePath=`System.AppData/HitTriage/Hit Design/campaigns/${n}/enriched_table.csv`;if(!this.dataFrame)return void console.error("DataFrame is empty");yield this.dataFrame.meta.detectSemanticTypes(),this._molColName=null!==(d=null===(u=this.dataFrame.columns.bySemType(t.SEMTYPE.MOLECULE))||void 0===u?void 0:u.name)&&void 0!==d?d:p,this._dfName=null!==(m=(y=this.dataFrame).name)&&void 0!==m?m:y.name=n,this._campaignId=n,this.template=i,null!==(h=this._submitView)&&void 0!==h||(this._submitView=new Ae(this)),e.shell.windows.showHelp=!1,this._extraStageColsCount=this.dataFrame.rowCount-this.dataFrame.filter.trueCount;const b=e.shell.addView(this.designView);this.currentDesignViewId=b.name,this.setBaseUrl(),R(a,null!==(g=null!==(f=this._campaignId)&&void 0!==f?f:null===(v=this._campaign)||void 0===v?void 0:v.name)&&void 0!==g?g:""),this.campaign&&(this.campaign.template=i)}))}get campaignId(){return this._campaignId}get designView(){return this._designView=this.getDesignView()}get designViewName(){return this._designViewName}get molColName(){var e,i,n,o;return null!==(e=this._molColName)&&void 0!==e?e:this._molColName=null!==(o=null===(n=null===(i=this.dataFrame)||void 0===i?void 0:i.columns.bySemType(t.SEMTYPE.MOLECULE))||void 0===n?void 0:n.name)&&void 0!==o?o:p}get campaign(){return this._campaign}set campaign(e){this._campaign=e}getDesignView(){var i,n,a,s,r,l;const c=[],u=null===(i=this.dataFrame.col(this.molColName))||void 0===i?void 0:i.toList().every((e=>!e&&""===e)),h=t.TableView.create(this.dataFrame,!1);this._designViewName=null!==(a=null===(n=this.campaign)||void 0===n?void 0:n.name)&&void 0!==a?a:this._designViewName,h.name=this._designViewName,this.processedValues=this.dataFrame.getCol(this.molColName).toList(),setTimeout((()=>Ee(this,void 0,void 0,(function*(){var i,n;if(h._onAdded(),yield new Promise((e=>setTimeout(e,1e3))),null===(i=this._campaign)||void 0===i?void 0:i.layout)try{const e=t.ViewLayout.fromViewState(this._campaign.layout);h.loadLayout(e)}catch(e){console.error(e)}u&&e.functions.call("Chem:editMoleculeCell",{cell:h.grid.cell(this._molColName,0)}),c.push(this.dataFrame.onRowsAdded.subscribe((()=>{var t,i;try{if(this.processedValues=this.dataFrame.getCol(this.molColName).toList(),(null===(t=this.template.stages)||void 0===t?void 0:t.length)>0)for(let e=0;e<this.dataFrame.rowCount;e++){const t=this.dataFrame.col(d).get(e);t&&""!==t&&!(null===(i=this.dataFrame.col(d))||void 0===i?void 0:i.isNone(e))||this.dataFrame.set(d,e,this.template.stages[0])}let n=null;for(let e=0;e<this.dataFrame.rowCount;e++){const t=h.grid.cell(this.molColName,e);t&&(""!==t.cell.value&&null!==t.cell.value||(n=t))}n&&e.functions.call("Chem:editMoleculeCell",{cell:n})}catch(e){console.error(e)}}))),this.dataFrame&&c.push(null===(n=this.dataFrame)||void 0===n?void 0:n.onRowsRemoved.subscribe((()=>{try{this.processedValues=this.dataFrame.getCol(this.molColName).toList()}catch(e){console.error(e)}}))),c.push(e.events.onContextMenu.subscribe((i=>{var n,o,a,s,r;try{const e=null===(n=null==i?void 0:i.args)||void 0===n?void 0:n.context;if(!e)return;if((null==e?void 0:e.type)!==t.VIEWER.GRID)return;if(!e.tableView||e.tableView.id!==h.id)return;if((null===(s=null===(a=null===(o=null==i?void 0:i.args)||void 0===o?void 0:o.item)||void 0===a?void 0:a.tableColumn)||void 0===s?void 0:s.name)!==this.molColName)return;const l=null===(r=null==i?void 0:i.args)||void 0===r?void 0:r.menu;if(!l)return;l.item("Add new row",(()=>{this.dataFrame.rows.addNew(null,!0)})),l.item("Duplicate molecule",(()=>{var e,t,n,o;try{this.dataFrame.rows.addNew(null,!0);let a=null;for(let e=0;e<this.dataFrame.rowCount;e++){const t=h.grid.cell(this.molColName,e);t&&(""!==t.cell.value&&null!==t.cell.value||(a=t))}a&&(a.cell.value=null!==(o=null===(n=null===(t=null===(e=null==i?void 0:i.args)||void 0===e?void 0:e.item)||void 0===t?void 0:t.cell)||void 0===n?void 0:n.value)&&void 0!==o?o:"")}catch(e){console.error(e)}}))}catch(t){e.log.error(t)}}))),c.push(h.grid.onCellValueEdited.subscribe((i=>Ee(this,void 0,void 0,(function*(){var n,o,a,s;try{if((null===(n=i.tableColumn)||void 0===n?void 0:n.name)===d)return void(yield this.saveCampaign(void 0,!1));if((null===(o=i.tableColumn)||void 0===o?void 0:o.name)!==this.molColName)return;const r=i.cell.value,l=i.tableRowIndex;(null===(a=this.dataFrame.col(m))||void 0===a?void 0:a.get(l))&&""!==(null===(s=this.dataFrame.col(m))||void 0===s?void 0:s.get(l))||this.dataFrame.col(m).set(l,he(this.dataFrame.col(m)),!1);const c=this.template.compute;if(!r||""===r)return;const u=yield function(i,n,o,a=[],s=[]){return me(this,void 0,void 0,(function*(){const r=e.chem.convert(i,e.chem.Notation.Unknown,e.chem.Notation.Smiles),l=t.Column.fromStrings(p,[r]),c=t.DataFrame.fromColumns([l]);c.name="HD Single cell values",yield c.meta.detectSemanticTypes(),n.length&&(yield e.chem.descriptors(c,l.name,n));for(const e of o){const i=e.args,n=t.Func.find({package:e.package,name:e.name});if(!n.length||!n[0]){console.warn(`Function ${e.name} from package ${e.package} is not found`);continue}const o=n[0],a=o.inputs[0].name,s=o.inputs[1].name;yield o.apply(Object.assign(Object.assign({},i),{[a]:c,[s]:l.name}))}for(const t of a){const i=t.args;try{const n=yield e.dapi.scripts.find(t.id);if(n){const e=n.inputs[0].name,t=n.inputs[1].name;yield n.apply(Object.assign(Object.assign({},i),{[e]:c,[t]:l.name}))}}catch(e){console.error(e)}}for(const t of s){const i=t.args;try{const n=yield e.dapi.queries.find(t.id);if(n){const e=n.inputs[0].name,t=[r],o=yield n.apply(Object.assign(Object.assign({},i),{[e]:t}));if(!o||0===o.rowCount)continue;yield Y(c,p,o)}}catch(e){console.error(e)}}return c}))}(r,c.descriptors.args,c.functions,c.scripts,c.queries);for(const e of u.columns.toList())e.name!==p&&(this.dataFrame.columns.contains(e.name)||(this.dataFrame.columns.addNew(e.name,e.type).semType=e.semType),this.dataFrame.col(e.name).set(l,e.get(0),!1));this.dataFrame.fireValuesChanged(),this.saveCampaign(void 0,!1)}catch(e){console.error(e)}})))));const o=e.events.onViewRemoved.subscribe((e=>{e.id===h.id&&(c.forEach((e=>e.unsubscribe())),o.unsubscribe())}))}))),300);const g=null==h?void 0:h.getRibbonPanels();if(g&&!q(g)){const t=()=>Ee(this,void 0,void 0,(function*(){var e;z(this,(e=>Ee(this,void 0,void 0,(function*(){var t,i,n,a,s,r,l,c,u,d;const p=this.template.compute.descriptors.args,m=this.template.compute.functions,g=null!==(t=this.template.compute.scripts)&&void 0!==t?t:[],y=null!==(i=this.template.compute.queries)&&void 0!==i?i:[],b=e.descriptors,w={descriptors:{enabled:!!(null===(n=null==e?void 0:e.descriptors)||void 0===n?void 0:n.length),args:null!==(a=null==e?void 0:e.descriptors)&&void 0!==a?a:[]},functions:Object.entries(null!==(s=null==e?void 0:e.externals)&&void 0!==s?s:{}).map((([e,t])=>{const i=e.split(":");return{name:i[1],package:i[0],args:t}})),scripts:Object.entries(null!==(r=null==e?void 0:e.scripts)&&void 0!==r?r:{}).filter((([e,t])=>e.startsWith(f)&&3===e.split(":").length)).map((([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}})),queries:Object.entries(null!==(l=null==e?void 0:e.queries)&&void 0!==l?l:{}).filter((([e,t])=>e.startsWith(v)&&3===e.split(":").length)).map((([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}}))};this.template.compute=w,this.campaign.template=this.template;const C=b.filter((e=>!p.includes(e))),A={};Object.entries(null!==(c=null==e?void 0:e.externals)&&void 0!==c?c:{}).filter((([e,t])=>{const i=m.find((t=>`${t.package}:${t.name}`===e));return!i||!Object.entries(t).every((([e,t])=>i.args[e]===t))})).forEach((([e,t])=>{A[e]=t}));const T={};Object.entries(null!==(u=null==e?void 0:e.scripts)&&void 0!==u?u:{}).filter((([e,t])=>{const i=g.find((t=>`HTScript:${t.name}:${t.id}`===e));return!i||!Object.entries(t).every((([e,t])=>i.args[e]===t))})).forEach((([e,t])=>{T[e]=t}));const x={};Object.entries(null!==(d=null==e?void 0:e.queries)&&void 0!==d?d:{}).filter((([e,t])=>{const i=y.find((t=>`HTQuery:${t.name}:${t.id}`===e));return!i||!Object.entries(t).every((([e,t])=>i.args[e]===t))})).forEach((([e,t])=>{x[e]=t})),o.setUpdateIndicator(h.grid.root,!0);try{yield fe({descriptors:C,externals:A,scripts:T,queries:x},this.dataFrame,this.molColName),this.dataFrame.fireValuesChanged()}finally{o.setUpdateIndicator(h.grid.root,!1),this.saveCampaign(void 0,!1)}}))),(()=>null),null===(e=this.campaign)||void 0===e?void 0:e.template,!0)})),i=o.iconFA("wrench",t,"Calculate additional properties"),n=o.icons.add((()=>{var e;null===(e=this.dataFrame)||void 0===e||e.rows.addNew(null,!0)}),"Add new row"),a=o.bigButton("Progress tracker",(()=>{this.currentTilesViewId&&e.shell.view(this.currentTilesViewId)?e.shell.v=e.shell.view(this.currentTilesViewId):(this._tilesView=new Ie(this),this._tilesView.parentCall=this.parentCall,this._tilesViewTab=e.shell.addView(this._tilesView),this.currentTilesViewId=this._tilesViewTab.name,this._tilesView.onActivated())})),c=o.bigButton("Submit",(()=>{var e;const t=null===(e=this._submitView)||void 0===e?void 0:e.render();if(t){const e=o.dialog("Submit");e.add(t),e.addButton("Save",(()=>{this.saveCampaign(),e.close()})),e.addButton("Submit",(()=>{var t;null===(t=this._submitView)||void 0===t||t.submit(),e.close()})),e.show()}}));c.classList.add("hit-design-submit-button");const u=[c];null!==(l=null===(r=null===(s=this.template)||void 0===s?void 0:s.stages)||void 0===r?void 0:r.length)&&void 0!==l&&l&&u.unshift(a),this.campaign&&this.template&&!this.campaign.template&&(this.campaign.template=this.template),u.unshift(i),u.unshift(n),g.push(u),h.setRibbonPanels(g)}return h.parentCall=this.parentCall,h}getSummary(){var i,n,a,s;const r=()=>{var e,t;const i=this._filePath.indexOf(null!==(e=this.campaignId)&&void 0!==e?e:null===(t=this._campaign)||void 0===t?void 0:t.name);return-1===i?this._filePath:this._filePath.substring(0,i-1)},l=Object.assign({},null!==(n=null===(i=this.campaign)||void 0===i?void 0:i.campaignFields)&&void 0!==n?n:this.campaignProps);return this.template&&this.template.campaignFields&&Object.entries(l).forEach((([i,n])=>{const o=this.template.campaignFields.find((e=>e.name===i));o&&"Date"===o.type&&n?"Invalid Date"!==new Date(n).toString()?l[i]=new Date(n).toLocaleDateString():n.date?l[i]=new Date(n.date).toLocaleDateString():l[i]=n:o&&o.type===t.SEMTYPE.MOLECULE&&n&&(l[i]=e.chem.drawMolecule(n))})),Object.assign(Object.assign({Template:null!==(s=null===(a=this.template)||void 0===a?void 0:a.name)&&void 0!==s?s:"Molecules","File path":(()=>{const t=o.icons.edit((()=>{const i=r(),s=o.stringInput("Path",i),l=s.root.getElementsByTagName("label").item(0);l&&l.remove(),s.root.style.width="100%";const c=o.button("Save",(()=>Ee(this,void 0,void 0,(function*(){const i=yield function(){return Ee(this,void 0,void 0,(function*(){const t=s.value;return t&&""!==t.trim()?!!(yield e.dapi.files.exists(t))||(e.shell.error("Given folder does not exist"),!1):(e.shell.error("Path can not be empty"),!1)}))}();if(!i)return;const l=s.value;l.endsWith("/")?this._filePath=`${l}${this.campaignId}/enriched_table.csv`:this._filePath=`${l}/${this.campaignId}/enriched_table.csv`,this._campaign&&(this._campaign.savePath=this._filePath),yield this.saveCampaign(void 0,!0),o.empty(a);const c=r();n=o.link(c,(()=>{var e,t,i;return this.download(this.dataFrame,null!==(i=null!==(e=this.campaignId)&&void 0!==e?e:null===(t=this._campaign)||void 0===t?void 0:t.name)&&void 0!==i?i:"Molecules")}),A),a.appendChild(n),a.appendChild(t)})))),u=o.button("Cancel",(()=>{o.empty(a),a.appendChild(n),a.appendChild(t)}));o.empty(a),s.addOptions(u),s.addOptions(c),a.appendChild(s.root)}),"Edit file path");t.style.marginLeft="5px";const i=r();let n=o.link(i,(()=>{var e,t,i;return this.download(this.dataFrame,null!==(i=null!==(e=this.campaignId)&&void 0!==e?e:null===(t=this._campaign)||void 0===t?void 0:t.name)&&void 0!==i?i:"Molecules")}),A);const a=o.divH([n,t],{style:{alignItems:"center"}});return a})()},l),{"Number of molecules":(this.dataFrame.rowCount-this._extraStageColsCount).toString(),"Enrichment methods":[this.template.compute.descriptors.enabled?"descriptors":"",...this.template.compute.functions.map((e=>e.name))].filter((e=>e&&""!==e.trim())).join(", ")})}saveCampaign(i,n=!0){var o,a,s,r,l,c,u,d;return Ee(this,void 0,void 0,(function*(){const p=this.campaignId,h=this.template.name,f=this.dataFrame,v=p,g={};f.columns.toList().forEach((e=>g[e.name]=e.semType));const y={name:v,templateName:h,status:null!==(a=null!=i?i:null===(o=this.campaign)||void 0===o?void 0:o.status)&&void 0!==a?a:"In Progress",createDate:null!==(r=null===(s=this.campaign)||void 0===s?void 0:s.createDate)&&void 0!==r?r:M(new Date),campaignFields:null!==(c=null===(l=this.campaign)||void 0===l?void 0:l.campaignFields)&&void 0!==c?c:this.campaignProps,columnSemTypes:g,rowCount:null!==(d=null===(u=f.col(m))||void 0===u?void 0:u.toList().filter((e=>"StageDefiningRow"!==e)).length)&&void 0!==d?d:0,filteredRowCount:f.filter.trueCount,savePath:this._filePath};console.log(this._filePath);const b=t.DataFrame.fromColumns(f.columns.toList().filter((e=>!e.name.startsWith("~")))).toCsv();yield e.dapi.files.writeAsText(this._filePath,b);const w=this._designView.saveLayout();return w?y.layout=w.viewState:e.shell.warning("Layout cound not be saved"),y.template=this.template,yield Fe.files.writeAsText(`Hit Design/campaigns/${p}/campaign.json`,JSON.stringify(y)),n&&e.shell.info("Campaign saved successfully."),this.campaign=y,y}))}}class Se extends t.GridCellRenderer{get name(){return"customGasteigerPNG"}get cellType(){return"customGasteigerPNG"}get defaultHeight(){return 200}get defaultWidth(){return 200}render(e,t,i,n,o,a,s){if(a.gridRow<0||!a.cell.value)return;const r=a.cell.value,l=new Image(n-2,o-2);l.src="data:image/png;base64,"+r,l.onload=function(){e.drawImage(l,t+2,i+2,n-2,o-2)}}}var _e=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};const Fe=new t.Package;function Be(){return _e(this,void 0,void 0,(function*(){const t=e.functions.getCurrentCall();new ge(t)}))}function Oe(){return _e(this,void 0,void 0,(function*(){const t=e.functions.getCurrentCall();new Ne(t)}))}function Pe(){return _e(this,void 0,void 0,(function*(){const t=e.data.demo.molecules(100);return t.name="100 Molecules",t}))}function ke(){return _e(this,void 0,void 0,(function*(){const t=e.data.demo.molecules(5e3);return t.name="5000 Molecules",t}))}function Ve(t){return _e(this,void 0,void 0,(function*(){const i=e.data.demo.molecules(t);return i.name="Variable Molecules number",i}))}function Le(t,i){return _e(this,void 0,void 0,(function*(){e.shell.info(t.rowCount),e.shell.info(i)}))}function je(){return new Se}})(),hittriage=n})();
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