@datagrok/hit-triage 1.1.2 → 1.1.3

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Files changed (7) hide show
  1. package/CHANGELOG.md +4 -0
  2. package/dist/package.js +1 -1
  3. package/dist/package.js.map +1 -1
  4. package/package.json +1 -1
  5. package/src/app/hit-design-app.ts +2 -2
  6. package/src/app/hit-triage-app.ts +15 -6
  7. package/src/package.ts +4 -6
package/CHANGELOG.md CHANGED
@@ -1,5 +1,9 @@
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  # HitTriage changelog
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+ ## 1.1.3 (2023-12-27)
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+ Fix incompatibility with old api version
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  ## 1.1.2 (2023-12-26)
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  Hit Triage application improvements
package/dist/package.js CHANGED
@@ -1,2 +1,2 @@
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A=o.div([d,w]),T=n.campaignFields.map((t=>t.type===e.SEMTYPE.MOLECULE?Object.assign(Object.assign({},t),{type:"String",semtype:e.SEMTYPE.MOLECULE}):t)).map((t=>e.Property.fromOptions(Object.assign({name:t.name,type:$[t.type],nullable:!t.required},t.semtype?{semType:t.semtype}:{})))),x={},I=T.length?o.input.form(x,T):o.div();I.classList.remove("ui-form"),"File"===n.dataSourceType?(d.style.display="inherit",w.style.display="none"):(d.style.display="none",w.style.display="inherit");const N=o.div([A,...T.length?[I]:[]]),_=o.buttonsInput([]);return N.appendChild(_),{promise:new Promise((e=>{const i=()=>Y(this,void 0,void 0,(function*(){if("File"===n.dataSourceType){if(!r)return void t.shell.error("No file selected");const n=r;n.name=r.name,e({df:n,type:"File",campaignProps:x})}else{const n=m[b.value];if(!n)return void t.shell.error("No function selected");const i={};Object.entries(h.inputs).forEach((([t,e])=>{i[t]=e}));const o=yield n.apply(i);e({df:o,type:"Query",campaignProps:x})}})),a=o.bigButton(y,(()=>i()));_.appendChild(a)})),root:N,cancelPromise:new Promise((t=>{o.button(C,(()=>t()))}))}}(n);return a.then((t=>et(this,void 0,void 0,(function*(){this.app.dataFrame=t.df,this.app._fileInputType=t.type,yield this.app.setTemplate(n),this.app.campaignProps=t.campaignProps,this.app.saveCampaign(void 0,!1)})))),s.then((()=>{this.init()})),i}))}createNewTemplate(){return et(this,void 0,void 0,(function*(){const n=yield K(),i=new e.ViewBase,o=t.shell.v;i.name="New Template",i.root.appendChild(n.root),i.parentCall=this.app.parentCall,t.shell.addView(i),i.path=new URL(this.app.baseUrl).pathname+"/new-template",i.parentView=o;const{sub:a}=M(t.shell.v,"Hit Triage",g,(()=>{t.shell.v=o,i.close()}));n.template.then((e=>et(this,void 0,void 0,(function*(){yield this.init(e),i.close(),H(i),t.shell.v=o,a.unsubscribe()})))),n.cancelPromise.then((()=>{a.unsubscribe(),i.close(),t.shell.v=o}))}))}}class it extends tt{constructor(t){super(t),this.name="Submit"}render(){return o.empty(this.root),o.divV([o.h1("Summary"),o.div([o.tableFromMap(this.app.getSummary())])])}onActivated(){this.render()}submit(){var n,i,o,a,s;return i=this,o=void 0,s=function*(){const i=null===(n=this.app.template)||void 0===n?void 0:n.submit;if(!i)return;const o=e.Func.find({name:i.fName,package:i.package})[0];if(!o)return void t.shell.error(`Function ${i.fName} not found.`);const a=e.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield o.apply({df:a,molecules:this.app.molColName}),this.app.campaign&&(this.app.campaign.status="Submitted"),this.app.saveCampaign("Submitted"),t.shell.info("Submitted successfully.")},new((a=void 0)||(a=Promise))((function(t,e){function n(t){try{l(s.next(t))}catch(t){e(t)}}function r(t){try{l(s.throw(t))}catch(t){e(t)}}function l(e){var i;e.done?t(e.value):(i=e.value,i instanceof a?i:new a((function(t){t(i)}))).then(n,r)}l((s=s.apply(i,o||[])).next())}))}}class ot{constructor(t){this.parentCall=t,this.resetBaseUrl()}resetBaseUrl(){const t=window.location.href,e=new URL(t);this.baseUrl=e.origin+e.pathname}getFilterType(t){const n=this.dataFrame.col(t);return(null==n?void 0:n.semType)===e.SEMTYPE.MOLECULE?e.FILTER_TYPE.SUBSTRUCTURE:(null==n?void 0:n.type)===e.COLUMN_TYPE.BOOL?e.FILTER_TYPE.BOOL_COLUMNS:(null==n?void 0:n.type)===e.COLUMN_TYPE.STRING?e.FILTER_TYPE.CATEGORICAL:e.FILTER_TYPE.HISTOGRAM}download(t,n,i=!1){const o=document.createElement("a"),a=e.DataFrame.fromColumns(t.columns.toList().filter((t=>!t.name.startsWith("~")))).toCsv({filteredRowsOnly:i});o.setAttribute("href","data:text/plain;charset=utf-8,"+encodeURIComponent(a)),o.setAttribute("download",n+".csv"),o.click()}getNewCampaignName(t,e){return n=this,i=void 0,a=function*(){const n=(yield It.files.list(t)).map((t=>t.name)).filter((t=>t.startsWith(e)));if(0===n.length)return e+"-1";const i=n.map((t=>t.split("-")[1])).filter(Boolean).map((t=>parseInt(t,10))).sort();return e+"-"+(i[i.length-1]+1).toString()},new((o=void 0)||(o=Promise))((function(t,e){function s(t){try{l(a.next(t))}catch(t){e(t)}}function r(t){try{l(a.throw(t))}catch(t){e(t)}}function l(e){var n;e.done?t(e.value):(n=e.value,n instanceof o?n:new o((function(t){t(n)}))).then(s,r)}l((a=a.apply(n,i||[])).next())}));var n,i,o,a}setBaseUrl(){const t=document.title;if(history.replaceState){const e={Title:t,Url:this.baseUrl};history.replaceState(e,e.Title,e.Url)}}}var at=function(t,e,n,i){return new(n||(n=Promise))((function(o,a){function s(t){try{l(i.next(t))}catch(t){a(t)}}function r(t){try{l(i.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,r)}l((i=i.apply(t,e||[])).next())}))},st=function(t,e,n,i){return new(n||(n=Promise))((function(o,a){function s(t){try{l(i.next(t))}catch(t){a(t)}}function r(t){try{l(i.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,r)}l((i=i.apply(t,e||[])).next())}))};class rt extends ot{constructor(n){super(n),this._filterViewName="Hit triage | Pick",this._filterDescriptions=[],this.campaignProps={},this._infoView=new nt(this),this.multiView=new e.MultiView({viewFactories:{[this._infoView.name]:()=>this._infoView}}),this.multiView.tabs.onTabChanged.subscribe((t=>{this.multiView.currentView instanceof tt&&this.multiView.currentView.onActivated()})),this.multiView.parentCall=n,t.events.onCurrentViewChanged.subscribe((()=>{var e,n,i,o;try{(null===(e=t.shell.v)||void 0===e?void 0:e.name)===this.currentPickViewId&&(t.shell.windows.showHelp=!1,this.setBaseUrl(),R(a,null!==(o=null!==(n=this._campaignId)&&void 0!==n?n:null===(i=this._campaign)||void 0===i?void 0:i.name)&&void 0!==o?o:""))}catch(t){console.error(t)}}))}setTemplate(n,i,o,s){var r,l,c,u,d,p,m,h,f,v,g;return st(this,void 0,void 0,(function*(){if((null===(r=this._pickView)||void 0===r?void 0:r.dataFrame)&&t.shell.closeTable(null===(l=this._pickView)||void 0===l?void 0:l.dataFrame),this._pickView=void 0,o?s&&(this._fileInputType=s.type,"File"===s.type?this.dataFrame=yield t.dapi.files.readCsv(s.query):this.dataFrame=yield t.functions.call(s.query)):(o=yield this.getNewCampaignName("Hit Triage/campaigns",n.key),R(a,o)),!this.dataFrame)return void console.error("Dataframe is empty.");if((null===(c=this._campaign)||void 0===c?void 0:c.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach((([t,e])=>{const n=this.dataFrame.columns.byName(t);n&&(n.semType=e)})),yield this.dataFrame.meta.detectSemanticTypes(),this._molColName=null!==(d=null===(u=this.dataFrame.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===u?void 0:u.name)&&void 0!==d?d:void 0,this._dfName=null!==(p=this.dataFrame.name)&&void 0!==p?p:null==s?void 0:s.query,this.dataFrame.name=null!==(h=null!==(m=this._dfName)&&void 0!==m?m:this.dataFrame.name)&&void 0!==h?h:"Molecules",this._campaignId=o,this.template=n,this._campaignFilters=i,!i){const t={};n.compute.functions.forEach((e=>{const n=`${e.package}:${e.name}`;t[n]=e.args})),yield this.calculateColumns({descriptors:n.compute.descriptors.enabled?n.compute.descriptors.args:[],externals:t})}const y=t.shell.v,b=t.shell.addView(this.pickView);this.currentPickViewId=b.name,this._submitView=new it(this),this.setBaseUrl(),R(a,null!==(g=null!==(f=this._campaignId)&&void 0!==f?f:null===(v=this._campaign)||void 0===v?void 0:v.name)&&void 0!==g?g:"");const w=b,{sub:C}=M(w,"Hit Triage","Pick",(()=>{t.shell.v=y,w.close(),C.unsubscribe()}));t.shell.windows.showHelp=!1}))}get filterSettings(){return this._campaignFilters}get campaignId(){return this._campaignId}get pickView(){return this._pickView=this.getFilterView()}get molColName(){var t,n,i;return null!==(t=this._molColName)&&void 0!==t?t:this._molColName=null===(i=null===(n=this.dataFrame)||void 0===n?void 0:n.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===i?void 0:i.name}get fileInputType(){return this._fileInputType}get campaign(){return this._campaign}set campaign(t){this._campaign=t}calculateColumns(n,i){var o;return st(this,void 0,void 0,(function*(){const a=this.dataFrame.columns.names();n.descriptors&&n.descriptors.length>0&&(yield t.chem.descriptors(this.dataFrame,this.molColName,n.descriptors));for(const t of Object.keys(n.externals)){const i=n.externals[t],o=e.Func.find({package:t.split(":")[0],name:t.split(":")[1]})[0],a=o.inputs[0].name,s=o.inputs[1].name;i&&(yield o.apply(Object.assign(Object.assign({},i),{[a]:this.dataFrame,[s]:this.molColName})))}for(const e of Object.keys(null!==(o=n.scripts)&&void 0!==o?o:{})){const i=n.scripts[e];if(i)try{const n=yield t.dapi.scripts.find(e);if(!n)continue;const o=n.inputs[0].name,a=n.inputs[1].name;yield n.apply(Object.assign(Object.assign({},i),{[o]:this.dataFrame,[a]:this.molColName}))}catch(t){console.error(t)}}if(i){const t=i.getFiltersGroup();this.dataFrame.columns.names().filter((t=>!a.includes(t))).forEach((e=>{t.add({type:this.getFilterType(e),column:e})}))}}))}getFilterView(){this.dataFrame.col(u)||this.dataFrame.columns.addNewBool(u).init(!1);const t=e.TableView.create(this.dataFrame,!1),n=t.getRibbonPanels(),i=o.iconFA("wrench",(()=>st(this,void 0,void 0,(function*(){G((e=>st(this,void 0,void 0,(function*(){this.calculateColumns(e,t)}))),(()=>null),this.template,!0)}))),"Calculate additional properties"),a=o.bigButton("Submit",(()=>{var t;const e=null===(t=this._submitView)||void 0===t?void 0:t.render();if(e){const t=o.dialog("Submit");t.add(e),t.addButton("Save",(()=>{this.saveCampaign(),t.close()})),t.addButton("Submit",(()=>{var e;null===(e=this._submitView)||void 0===e||e.submit(),t.close()})),t.show()}}));a.classList.add("hit-design-submit-button");const s=U(n);return n.push([i,...s?[]:[a]]),t.setRibbonPanels(n),t.name=this._filterViewName,setTimeout((()=>st(this,void 0,void 0,(function*(){var n;t._onAdded(),yield new Promise((t=>setTimeout(t,1e3)));const i=t.filters(this._campaignFilters?{filters:this._campaignFilters}:void 0);if(null===(n=this._campaign)||void 0===n?void 0:n.layout)try{const n=e.ViewLayout.fromViewState(this._campaign.layout);t.loadLayout(n)}catch(t){console.error(t)}t.dataFrame.onFilterChanged.subscribe((e=>{this._filterDescriptions=Array.from(t.dataFrame.rows.filters),this._campaignFilters=i.getOptions().look.filters})),setTimeout((()=>{this._filterDescriptions=Array.from(t.dataFrame.rows.filters),this._campaignFilters=i.getOptions().look.filters}),300)}))),300),t.parentCall=this.parentCall,t}getSummary(){var t,e,n,i,a,s,r;const l=null!==(e=null===(t=this.campaign)||void 0===t?void 0:t.campaignFields)&&void 0!==e?e:this.campaignProps;return Object.assign(Object.assign({Template:null!==(i=null===(n=this.template)||void 0===n?void 0:n.name)&&void 0!==i?i:"Molecules","File path":o.divH([o.link(null!==(a=this._dfName)&&void 0!==a?a:"-",(()=>this.download(this.dataFrame,"molecules")),w)],{style:{alignItems:"center"}})},l),{"Number of molecules":this.dataFrame.rowCount.toString(),"Enrichment methods":[this.template.compute.descriptors.enabled?"descriptors":"",...this.template.compute.functions.map((t=>t.name))].filter((t=>t&&""!==t.trim())).join(", "),Filters:this._filterDescriptions.join(", "),"Result Molecules":o.divH([o.link(null!==(r=null===(s=this.dataFrame)||void 0===s?void 0:s.filter.trueCount.toString())&&void 0!==r?r:"0",(()=>{this.download(this.dataFrame,"hits",!0)}),w)],{style:{alignItems:"center"}})})}saveCampaign(n,i=!0){var a,s,r,l,c,u;return st(this,void 0,void 0,(function*(){const d=this.campaignId,p=this.filterSettings,m=this.template.name,h=this.dataFrame,f=`System:AppData/HitTriage/Hit Triage/campaigns/${d}/`,v=null!=d?d:yield function(t){return at(this,void 0,void 0,(function*(){return new Promise((e=>at(this,void 0,void 0,(function*(){const n=o.stringInput("Campaign name","");o.dialog("Save Campaign").add(o.div(n.root)).onOK((function(){n.value&&""!==n.value?e(n.value):e(t)})).show()}))))}))}(d),g={};h.columns.toList().forEach((t=>g[t.name]=t.semType));const y={name:v,templateName:m,filters:null!=p?p:{},ingest:{type:"File",query:`${f}enriched_table.csv`,molColName:this.molColName},status:null!==(s=null!=n?n:null===(a=this.campaign)||void 0===a?void 0:a.status)&&void 0!==s?s:"In Progress",createDate:null!==(l=null===(r=this.campaign)||void 0===r?void 0:r.createDate)&&void 0!==l?l:j(new Date),campaignFields:null!==(u=null===(c=this.campaign)||void 0===c?void 0:c.campaignFields)&&void 0!==u?u:this.campaignProps,columnSemTypes:g,rowCount:h.rowCount,filteredRowCount:h.filter.trueCount},b=e.DataFrame.fromColumns(h.columns.toList().filter((t=>!t.name.startsWith("~")))).toCsv();yield It.files.writeAsText(`Hit Triage/campaigns/${d}/enriched_table.csv`,b);const w=this._pickView.saveLayout();w?y.layout=w.viewState:t.shell.warning("Layout cound not be saved"),yield It.files.writeAsText(`Hit Triage/campaigns/${d}/campaign.json`,JSON.stringify(y)),i&&t.shell.info("Campaign saved successfully.")}))}}var lt=n(290),ct={};ct.styleTagTransform=V(),ct.setAttributes=B(),ct.insert=S().bind(null,"head"),ct.domAPI=_(),ct.insertStyleElement=O(),I()(lt.Z,ct),lt.Z&&lt.Z.locals&&lt.Z.locals;var ut;!function(e){let n,i;!function(t){t.vert=function(t){return o.divV(t.map((t=>o.render(t))),{classes:"u2-panel"})},t.horz=function(t){return o.divH(t.map((t=>o.render(t))),{classes:"u2-panel"})}}(n=e.panels||(e.panels={})),e.appHeader=function(t){const e=o.iconImage("",t.iconPath);return q()(e).addClass("ui-app-header-icon").css("margin-right","20px"),n.horz([e,n.vert([o.markdown(t.description),t.learnMoreUrl?o.link("Learn more",t.learnMoreUrl):null])])},function(e){e.runAsync=function(e,n){return i=this,a=void 0,r=function*(){o.setUpdateIndicator(e,!0);try{return yield n()}catch(e){t.log.error(e)}finally{o.setUpdateIndicator(e,!1)}},new((s=void 0)||(s=Promise))((function(t,e){function n(t){try{l(r.next(t))}catch(t){e(t)}}function o(t){try{l(r.throw(t))}catch(t){e(t)}}function l(e){var i;e.done?t(e.value):(i=e.value,i instanceof s?i:new s((function(t){t(i)}))).then(n,o)}l((r=r.apply(i,a||[])).next())}));var i,a,s,r}}(i=e.tools||(e.tools={}))}(ut||(ut={}));function dt(n,i,o,a=[]){return s=this,r=void 0,c=function*(){const s=e.Column.fromStrings(p,[n]),r=e.DataFrame.fromColumns([s]);yield r.meta.detectSemanticTypes(),i.length&&(yield t.chem.descriptors(r,s.name,i));for(const e of o){const n=e.args,i=yield t.functions.find(`${e.package}:${e.name}`);if(!i)continue;const o=i.inputs[0].name,a=i.inputs[1].name;yield i.apply(Object.assign(Object.assign({},n),{[o]:r,[a]:s.name}))}for(const e of a){const n=e.args;try{const i=yield t.dapi.scripts.find(e.id);if(i){const t=i.inputs[0].name,e=i.inputs[1].name;yield i.apply(Object.assign(Object.assign({},n),{[t]:r,[e]:s.name}))}}catch(t){console.error(t)}}return r},new((l=void 0)||(l=Promise))((function(t,e){function n(t){try{o(c.next(t))}catch(t){e(t)}}function i(t){try{o(c.throw(t))}catch(t){e(t)}}function o(e){var o;e.done?t(e.value):(o=e.value,o instanceof l?o:new l((function(t){t(o)}))).then(n,i)}o((c=c.apply(s,r||[])).next())}));var s,r,l,c}function pt(t){let e=0;if(t.length>1)for(const n of t.toList()){if(!n||!n.startsWith(h[0])||n.length!==h.length)continue;const t=parseInt(n.substring(1));isNaN(t)||(e=Math.max(t,e))}return`V${"".concat(...new Array(h.length-1-(e+1).toString().length).fill("0"))}${e+1}`}var mt=function(t,e,n,i){return new(n||(n=Promise))((function(o,a){function s(t){try{l(i.next(t))}catch(t){a(t)}}function r(t){try{l(i.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,r)}l((i=i.apply(t,e||[])).next())}))};function ht(n){var i,a,s,l,u,d,p,m,h,v,g;return mt(this,void 0,void 0,(function*(){const y=e.Func.find({tags:[r]}),w=yield It.files.list("Hit Design/templates");let A=!1,T=!1;const x=w.map((t=>t.name.slice(0,-5))),I=[];for(const t of w)try{const e=JSON.parse(yield It.files.readAsText(t));I.push(e.key)}catch(t){console.error(t)}const N=e.Func.find({tags:[c]}),_={};N.forEach((t=>{var e;_[null!==(e=t.friendlyName)&&void 0!==e?e:t.name]=t}));const E=o.choiceInput("Submit function",null,[null,...Object.keys(_)]);E.nullable=!0,E.value=null!==(a=null===(i=null==n?void 0:n.submit)||void 0===i?void 0:i.fName)&&void 0!==a?a:null,E.setTooltip("Select function to be called upon submitting");const S=o.divText("Template name is empty or already exists",{classes:"hit-triage-error-div"}),F=o.divText("Template key is empty or already exists",{classes:"hit-triage-error-div"});function B(){var t,e,n,i;if(""===P.value||x.includes(null!==(e=null===(t=P.value)||void 0===t?void 0:t.trim())&&void 0!==e?e:"")){const t=null!==(n=P.input.offsetLeft)&&void 0!==n?n:0,e=null!==(i=P.input.offsetWidth)&&void 0!==i?i:0;S.style.marginLeft=`${t}px`,S.style.width=`${e}px`,S.style.opacity="100%",S.style.borderTop="1px solid red",A=!0}else S.style.borderTop="none",S.style.opacity="0%",A=!1}const P=o.stringInput("Name",null!==(s=null==n?void 0:n.name)&&void 0!==s?s:"",B);function O(){var t,e,n,i;if(""===k.value||I.includes(null!==(e=null===(t=k.value)||void 0===t?void 0:t.trim())&&void 0!==e?e:"")){const t=null!==(n=k.input.offsetLeft)&&void 0!==n?n:0,e=null!==(i=k.input.offsetWidth)&&void 0!==i?i:0;F.style.marginLeft=`${t}px`,F.style.width=`${e}px`,F.style.borderTop="1px solid red",F.style.opacity="100%",T=!0}else F.style.opacity="0%",F.style.borderTop="none",T=!1}const k=o.stringInput("Key",null!==(l=null==n?void 0:n.key)&&void 0!==l?l:"",O);k.setTooltip("Template key used for campaign prefix"),P.setTooltip("Template name"),P.root.style.borderBottom="none",k.root.style.borderBottom="none",S.style.opacity="0%",F.style.opacity="0%";const V={Descriptors:"Descriptors"};y.forEach((t=>{var e;V[null!==(e=t.friendlyName)&&void 0!==e?e:t.name]=`${t.package.name}:${t.name}`}));let L=null;const D={compute:{descriptors:{enabled:!0,args:null!==(p=null===(d=null===(u=null==n?void 0:n.compute)||void 0===u?void 0:u.descriptors)||void 0===d?void 0:d.args)&&void 0!==p?p:[]},functions:null!==(h=null===(m=null==n?void 0:n.compute)||void 0===m?void 0:m.functions)&&void 0!==h?h:[]}},j=yield G((t=>{L=t}),(()=>null),D,!1);j.root.classList.add("hit-triage-new-template-functions-input");const R=Q(null==n?void 0:n.campaignFields),M=function(t){const n=[e.Property.fromOptions({name:"Name",type:e.TYPE.STRING})],i=new Z(n,t?t.map((t=>({Name:t}))):void 0,{horizontalInputNames:!0});let o={};return i.onItemAdded.subscribe((t=>{o=null!=t?t:{}})),i.onAddingItemChanged.subscribe((t=>{t&&(o=t.item)})),{getFields:function(){const t=i.items.filter((t=>t.Name)).map((t=>t.Name));return o.Name&&""!==o.Name&&t.push(o.Name),t},fieldsDiv:i.root}}(null==n?void 0:n.stages),H=o.divV([o.divV([P,S]),o.divV([k,F]),R.fieldsDiv]),U=o.h2("Stages");o.tooltip.bind(U,'Define Stages for designed molecules. For example, "Design", "Synthesis", "Test", etc.');const $=o.h2("Compute");o.tooltip.bind($,'Define functions to be calculated for each molecule. For example, "Descriptors", "Descriptors:Descriptors", etc.');const Y=o.div([o.h2("Details"),H,U,M.fieldsDiv,$,j.root,o.h2("Submit"),E.root],"ui-form"),W=o.buttonsInput([]);Y.appendChild(W);const q=null!==(g=null===(v=W.getElementsByClassName("ui-input-editor"))||void 0===v?void 0:v[0])&&void 0!==g?g:W,J=new Promise((t=>{const e=o.button(C,(()=>t()));q.appendChild(e)})),z=new Promise((e=>{const n=o.bigButton(b,(()=>function(){var n,i,o,a;return mt(this,void 0,void 0,(function*(){if(B(),O(),j.okProxy(),A||!P.value||""===P.value)return void t.shell.error("Template name is empty or already exists");if(T||!k.value||""===k.value)return void t.shell.error("Template key is empty or already exists");const s=E.value?_[E.value]:void 0,r=Object.assign({name:P.value,key:k.value,campaignFields:R.getFields(),stages:M.getFields(),compute:{descriptors:{enabled:!!(null===(n=null==L?void 0:L.descriptors)||void 0===n?void 0:n.length),args:null!==(i=null==L?void 0:L.descriptors)&&void 0!==i?i:[]},functions:Object.entries(null!==(o=null==L?void 0:L.externals)&&void 0!==o?o:{}).map((([t,e])=>{const n=t.split(":");return{name:n[1],package:n[0],args:e}})),scripts:Object.entries(null!==(a=null==L?void 0:L.scripts)&&void 0!==a?a:{}).filter((([t,e])=>t.startsWith(f)&&3===t.split(":").length)).map((([t,e])=>{var n,i;const o=t.split(":");return{name:null!==(n=o[1])&&void 0!==n?n:"",id:null!==(i=o[2])&&void 0!==i?i:"",args:e}}))}},s?{submit:{fName:s.name,package:s.package.name}}:{});var l;l=r,It.files.writeAsText(`Hit Design/templates/${l.name}.json`,JSON.stringify(l)),t.shell.info("Template created successfully"),e(r)}))}()));q.appendChild(n)}));return{root:Y,template:z,cancelPromise:J}}))}var ft=function(t,e,n,i){return new(n||(n=Promise))((function(o,a){function s(t){try{l(i.next(t))}catch(t){a(t)}}function r(t){try{l(i.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,r)}l((i=i.apply(t,e||[])).next())}))};class vt extends tt{constructor(e){super(e),this.deletedCampaigns=[],this.name="Hit Design",t.shell.windows.showHelp=!0,t.shell.windows.help.showHelp(It.webRoot+"README_HD.md"),this.checkCampaign().then((t=>{this.app.campaign=t,this.init()}))}onActivated(){t.shell.windows.showHelp=!0,t.shell.windows.help.showHelp(It.webRoot+"README_HD.md")}init(t){return ft(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0);try{const e=o.h1(A),n=o.h1(T,{style:{marginLeft:"10px"}}),i=ut.appHeader({iconPath:It.webRoot+"/images/icons/hit-design-icon.png",learnMoreUrl:"https://github.com/datagrok-ai/public/blob/master/packages/HitTriage/README_HD.md",description:"- Configure your own workflow using the template editor\n- Sketch molecules in the molecular spreadsheet\n- Annotate and share ideas with the team\n- Calculate different molecular properties\n- Save campaigns and continue from where you left off\n- Submit final selection to the function of your choice"}),a=o.div(),s=o.divH([]),r=o.div([s,a],"ui-form"),l=yield this.getCampaignsTable();q()(this.root).empty(),this.root.appendChild(o.div([o.divV([i,e],{style:{marginLeft:"10px"}}),l,n,r])),yield this.startNewCampaign(a,s,t),this.app.resetBaseUrl()}finally{o.setUpdateIndicator(this.root,!1)}}))}startNewCampaign(t,e,n){var i;return ft(this,void 0,void 0,(function*(){const a=(yield It.files.list("Hit Design/templates")).filter((t=>t.name.endsWith(".json"))).map((t=>t.name.slice(0,-5)));n&&!a.includes(n.name)&&a.push(n.name);let s=null;const r=()=>ft(this,void 0,void 0,(function*(){const e=l.value,i=n&&n.name===e?n:JSON.parse(yield It.files.readAsText("Hit Design/templates/"+e+".json"));s=i;const o=yield this.getNewCampaignAccordeon(i);q()(t).empty(),t.appendChild(o)})),l=o.choiceInput("Template",null!==(i=null==n?void 0:n.name)&&void 0!==i?i:a[0],a,(()=>ft(this,void 0,void 0,(function*(){yield r()}))));l.root.style.width="100%";const c=o.icons.add((()=>{this.createNewTemplate()}),g),u=o.icons.copy((()=>{s&&this.createNewTemplate(s)}),"Clone template");c.style.color="#2083d5",l.addOptions(u),l.addOptions(c),yield r(),q()(e).empty(),e.appendChild(l.root)}))}checkCampaign(t){var e;return ft(this,void 0,void 0,(function*(){const n=location.search,i=new URLSearchParams(n);if(!i.has(s)&&!t)return;const o=null!=t?t:i.get(s);if(!(yield It.files.exists(`Hit Design/campaigns/${o}/campaign.json`)))return;const a=JSON.parse(yield It.files.readAsText(`Hit Design/campaigns/${o}/campaign.json`));a&&(this.app.campaign=a);const r=null!==(e=a.template)&&void 0!==e?e:JSON.parse(yield It.files.readAsText(`Hit Design/templates/${a.templateName}.json`));return yield this.app.setTemplate(r,o),t&&R(s,t),a.template=r,a}))}getCampaignsTable(){return ft(this,void 0,void 0,(function*(){const t=(yield It.files.list("Hit Design/campaigns")).filter((t=>-1===this.deletedCampaigns.indexOf(t.name))),e={};for(const n of t){const t=JSON.parse(yield It.files.readAsText(`Hit Design/campaigns/${n.name}/campaign.json`));e[t.name]=t}const n=o.table(Object.values(e),(t=>[o.link(t.name,(()=>this.setCampaign(t.name)),"",""),t.createDate,t.rowCount,t.status,o.icons.delete((()=>ft(this,void 0,void 0,(function*(){o.dialog("Delete campaign").add(o.divText(`Are you sure you want to delete campaign ${t.name}?`)).onOK((()=>ft(this,void 0,void 0,(function*(){yield this.deleteCampaign("Hit Design",t.name),this.deletedCampaigns.push(t.name),yield this.init()})))).show()}))),"Delete campaign")]),["Name","Created","Molecules","Status",""]);return n.style.color="var(--grey-5)",n.style.marginLeft="24px",n}))}setCampaign(t){return ft(this,void 0,void 0,(function*(){const e=yield this.checkCampaign(t);this.app.campaign=e}))}getNewCampaignAccordeon(n){return ft(this,void 0,void 0,(function*(){const{root:i,promise:a,cancelPromise:s}=function(n){var i,a;const s=e.DataFrame.create(1),r=s.columns.addNew(p,e.TYPE.STRING);r.semType=e.SEMTYPE.MOLECULE,r.setTag(e.TAGS.UNITS,e.UNITS.Molecule.SMILES),r.set(0,null),(null===(i=null==n?void 0:n.stages)||void 0===i?void 0:i.length)>0&&s.columns.addNew(d,e.TYPE.STRING).set(0,n.stages[0]);const l=s.columns.addNew(m,e.TYPE.STRING);l.set(0,pt(l));const c=n.campaignFields.map((t=>t.type===e.SEMTYPE.MOLECULE?Object.assign(Object.assign({},t),{type:"String",semtype:e.SEMTYPE.MOLECULE}):t)).map((t=>e.Property.fromOptions(Object.assign({name:t.name,type:$[t.type],nullable:!t.required},t.semtype?{semType:t.semtype}:{})))),u={},h=o.input.form(u,c);h.classList.remove("ui-form");const f=o.div([...(null===(a=n.campaignFields)||void 0===a||a.length,[]),h]),v=o.buttonsInput([]);return f.appendChild(v),{promise:new Promise((e=>{const i=o.bigButton(y,(()=>{for(const e of n.campaignFields)if(e.required&&(!u[e.name]||""===u[e.name]))return void t.shell.error(`Field '${e.name}' is required`);e({df:s,campaignProps:u})}));v.appendChild(i)})),root:f,cancelPromise:new Promise((t=>{o.button(C,(()=>t()))}))}}(n);return a.then((t=>ft(this,void 0,void 0,(function*(){this.app.dataFrame=t.df,yield this.app.setTemplate(n),this.app.campaignProps=t.campaignProps,this.app.saveCampaign(void 0,!1)})))),s.then((()=>{this.init()})),i}))}createNewTemplate(n){return ft(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0);try{const i=yield ht(n),a=new e.ViewBase,s=t.shell.v;a.name="New Template",a.root.appendChild(i.root),a.parentCall=this.app.parentCall,t.shell.addView(a),a.path=new URL(this.app.baseUrl).pathname+"/new-template";const{sub:r}=M(a,"Hit Design",g,(()=>ft(this,void 0,void 0,(function*(){t.shell.v=s,a.close()}))));i.template.then((e=>ft(this,void 0,void 0,(function*(){yield this.init(e),a.close(),H(a),t.shell.v=s,r.unsubscribe()})))),i.cancelPromise.then((()=>ft(this,void 0,void 0,(function*(){r.unsubscribe(),a.close(),t.shell.v=s}))))}finally{o.setUpdateIndicator(this.root,!1)}}))}}class gt extends tt{constructor(t){super(t),this.name="Submit"}render(){return o.empty(this.root),o.divV([o.h1("Summary"),o.div([o.tableFromMap(this.app.getSummary())])])}onActivated(){this.render()}submit(){var n,i,o,a,s;return i=this,o=void 0,s=function*(){const i=null===(n=this.app.template)||void 0===n?void 0:n.submit;if(!i)return;const o=e.Func.find({name:i.fName,package:i.package})[0];if(!o)return void t.shell.error(`Function ${i.fName} not found.`);const a=e.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield o.apply({df:a,molecules:this.app.molColName}),this.app.campaign&&(this.app.campaign.status="Submitted"),this.app.saveCampaign("Submitted"),t.shell.info("Submitted successfully.")},new((a=void 0)||(a=Promise))((function(t,e){function n(t){try{l(s.next(t))}catch(t){e(t)}}function r(t){try{l(s.throw(t))}catch(t){e(t)}}function l(e){var i;e.done?t(e.value):(i=e.value,i instanceof a?i:new a((function(t){t(i)}))).then(n,r)}l((s=s.apply(i,o||[])).next())}))}}var yt=n(143),bt={};bt.styleTagTransform=V(),bt.setAttributes=B(),bt.insert=S().bind(null,"head"),bt.domAPI=_(),bt.insertStyleElement=O(),I()(yt.Z,bt),yt.Z&&yt.Z.locals&&yt.Z.locals;class wt extends tt{constructor(t){super(t),this.v=null,this.name="Progress Tracker"}render(){return n=this,i=void 0,s=function*(){return new Promise((n=>{var i,a;o.empty(this.root),this.app.dataFrame.columns.names().forEach((t=>{t.startsWith("~")&&this.app.dataFrame.columns.remove(t)})),this.v=e.Viewer.fromType(e.VIEWER.TILE_VIEWER,this.app.dataFrame,{lanesColumnName:d,lanes:null!==(a=null===(i=this.app.template)||void 0===i?void 0:i.stages)&&void 0!==a?a:[]}),this.root.appendChild(this.v.root),this.v.root.style.height="100%",this.v.root.style.width="100%",setTimeout((()=>{var e,i,a;null===(i=null===(e=this.v)||void 0===e?void 0:e.view)||void 0===i||i._onAdded();const s=null===(a=t.shell.v)||void 0===a?void 0:a.getRibbonPanels();if(s){if(U(s))return void n();const e=o.bigButton("Design view",(()=>{const e=t.shell.view(this.app.designViewName);e&&(t.shell.v=e)})),i=o.bigButton("Submit",(()=>{var t;const e=null===(t=this.app._submitView)||void 0===t?void 0:t.render();if(e){const t=o.dialog("Submit");t.add(e),t.addButton("Save",(()=>{this.app.saveCampaign(),t.close()})),t.addButton("Submit",(()=>{var e;null===(e=this.app._submitView)||void 0===e||e.submit(),t.close()})),t.show()}}));i.classList.add("hit-design-submit-button"),s.push([e,i]),t.shell.v.setRibbonPanels(s)}n()}),5)}))},new((a=void 0)||(a=Promise))((function(t,e){function o(t){try{l(s.next(t))}catch(t){e(t)}}function r(t){try{l(s.throw(t))}catch(t){e(t)}}function l(e){var n;e.done?t(e.value):(n=e.value,n instanceof a?n:new a((function(t){t(n)}))).then(o,r)}l((s=s.apply(n,i||[])).next())}));var n,i,a,s}onActivated(){this.render()}destroy(){var t;null===(t=this.v)||void 0===t||t.detach()}}var Ct=function(t,e,n,i){return new(n||(n=Promise))((function(o,a){function s(t){try{l(i.next(t))}catch(t){a(t)}}function r(t){try{l(i.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,r)}l((i=i.apply(t,e||[])).next())}))};class At extends ot{constructor(n){super(n),this._tilesViewTab=null,this._designViewName="Design",this._filePath="System.AppData/HitTriage/Hit Design/campaigns",this._molColName=p,this.campaignProps={},this.processedValues=[],this._extraStageColsCount=0,this._infoView=new vt(this),this.multiView=new e.MultiView({viewFactories:{[this._infoView.name]:()=>this._infoView}}),this.multiView.tabs.onTabChanged.subscribe((t=>{this.multiView.currentView instanceof tt&&this.multiView.currentView.onActivated()})),this.multiView.parentCall=n,this.mainView=this.multiView,t.events.onCurrentViewChanged.subscribe((()=>Ct(this,void 0,void 0,(function*(){var e,n,i,o,s,r,l,c,u;try{if((null===(e=t.shell.v)||void 0===e?void 0:e.name)===this.currentDesignViewId||(null===(n=t.shell.v)||void 0===n?void 0:n.name)===this.currentTilesViewId){t.shell.windows.showHelp=!1,this.setBaseUrl(),R(a,null!==(s=null!==(i=this._campaignId)&&void 0!==i?i:null===(o=this._campaign)||void 0===o?void 0:o.name)&&void 0!==s?s:""),(null===(r=t.shell.v)||void 0===r?void 0:r.name)===this.currentTilesViewId?yield null===(l=this._tilesView)||void 0===l?void 0:l.render():null===(c=this._tilesView)||void 0===c||c.destroy();const{sub:e}=M(t.shell.v,"Hit Design",null===(u=t.shell.v)||void 0===u?void 0:u.name,(()=>{var n,i;t.shell.v=this.mainView,null===(n=this._tilesView)||void 0===n||n.close(),null===(i=this._designView)||void 0===i||i.close(),this._infoView.init(),e.unsubscribe()}))}}catch(t){console.error(t)}}))))}setTemplate(n,i){var o,r,l,c,u,d,m,h,f,v,g,y;return Ct(this,void 0,void 0,(function*(){if(i){const e="System.AppData/HitTriage/Hit Design/campaigns";this._filePath=null!==(l=null===(r=this.campaign)||void 0===r?void 0:r.savePath)&&void 0!==l?l:`${e}/${i}/enriched_table.csv`,this.dataFrame=yield t.dapi.files.readCsv(this._filePath),(null===(c=this._campaign)||void 0===c?void 0:c.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach((([t,e])=>{const n=this.dataFrame.columns.byName(t);n&&e&&(n.semType=e)}))}else(null===(o=this._designView)||void 0===o?void 0:o.dataFrame)&&t.shell.closeTable(this._designView.dataFrame),this._designView=void 0,i=yield this.getNewCampaignName("Hit Design/campaigns",n.key),R(s,i),this._filePath=`System.AppData/HitTriage/Hit Design/campaigns/${i}/enriched_table.csv`;if(!this.dataFrame)return void console.error("DataFrame is empty");yield this.dataFrame.meta.detectSemanticTypes(),this._molColName=null!==(d=null===(u=this.dataFrame.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===u?void 0:u.name)&&void 0!==d?d:p,this._dfName=null!==(m=(y=this.dataFrame).name)&&void 0!==m?m:y.name=i,this._campaignId=i,this.template=n,null!==(h=this._submitView)&&void 0!==h||(this._submitView=new gt(this)),t.shell.windows.showHelp=!1,this._extraStageColsCount=this.dataFrame.rowCount-this.dataFrame.filter.trueCount;const b=t.shell.addView(this.designView);this.currentDesignViewId=b.name,this.setBaseUrl(),R(a,null!==(g=null!==(f=this._campaignId)&&void 0!==f?f:null===(v=this._campaign)||void 0===v?void 0:v.name)&&void 0!==g?g:""),this.campaign&&(this.campaign.template=n)}))}get campaignId(){return this._campaignId}get designView(){return this._designView=this.getDesignView()}get designViewName(){return this._designViewName}get molColName(){var t,n,i,o;return null!==(t=this._molColName)&&void 0!==t?t:this._molColName=null!==(o=null===(i=null===(n=this.dataFrame)||void 0===n?void 0:n.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===i?void 0:i.name)&&void 0!==o?o:p}get campaign(){return this._campaign}set campaign(t){this._campaign=t}getDesignView(){var n,i,a,s,r,l;const c=[],u=null===(n=this.dataFrame.col(this.molColName))||void 0===n?void 0:n.toList().every((t=>!t&&""===t)),h=e.TableView.create(this.dataFrame,!1);this._designViewName=null!==(a=null===(i=this.campaign)||void 0===i?void 0:i.name)&&void 0!==a?a:this._designViewName,h.name=this._designViewName,this.processedValues=this.dataFrame.getCol(this.molColName).toList(),setTimeout((()=>Ct(this,void 0,void 0,(function*(){var n,i;if(h._onAdded(),yield new Promise((t=>setTimeout(t,1e3))),null===(n=this._campaign)||void 0===n?void 0:n.layout)try{const t=e.ViewLayout.fromViewState(this._campaign.layout);h.loadLayout(t)}catch(t){console.error(t)}u&&t.functions.call("Chem:editMoleculeCell",{cell:h.grid.cell(this._molColName,0)}),c.push(this.dataFrame.onRowsAdded.subscribe((()=>{var e,n;try{if(this.processedValues=this.dataFrame.getCol(this.molColName).toList(),(null===(e=this.template.stages)||void 0===e?void 0:e.length)>0)for(let t=0;t<this.dataFrame.rowCount;t++){const e=this.dataFrame.col(d).get(t);e&&""!==e&&!(null===(n=this.dataFrame.col(d))||void 0===n?void 0:n.isNone(t))||this.dataFrame.set(d,t,this.template.stages[0])}let i=null;for(let t=0;t<this.dataFrame.rowCount;t++){const e=h.grid.cell(this.molColName,t);e&&(""!==e.cell.value&&null!==e.cell.value||(i=e))}i&&t.functions.call("Chem:editMoleculeCell",{cell:i})}catch(t){console.error(t)}}))),this.dataFrame&&c.push(null===(i=this.dataFrame)||void 0===i?void 0:i.onRowsRemoved.subscribe((()=>{try{this.processedValues=this.dataFrame.getCol(this.molColName).toList()}catch(t){console.error(t)}}))),c.push(t.events.onContextMenu.subscribe((n=>{var i,o,a,s,r;try{const t=null===(i=null==n?void 0:n.args)||void 0===i?void 0:i.context;if(!t)return;if((null==t?void 0:t.type)!==e.VIEWER.GRID)return;if(!t.tableView||t.tableView.id!==h.id)return;if((null===(s=null===(a=null===(o=null==n?void 0:n.args)||void 0===o?void 0:o.item)||void 0===a?void 0:a.tableColumn)||void 0===s?void 0:s.name)!==this.molColName)return;const l=null===(r=null==n?void 0:n.args)||void 0===r?void 0:r.menu;if(!l)return;l.item("Add new row",(()=>{this.dataFrame.rows.addNew(null,!0)})),l.item("Duplicate molecule",(()=>{var t,e,i,o;try{this.dataFrame.rows.addNew(null,!0);let a=null;for(let t=0;t<this.dataFrame.rowCount;t++){const e=h.grid.cell(this.molColName,t);e&&(""!==e.cell.value&&null!==e.cell.value||(a=e))}a&&(a.cell.value=null!==(o=null===(i=null===(e=null===(t=null==n?void 0:n.args)||void 0===t?void 0:t.item)||void 0===e?void 0:e.cell)||void 0===i?void 0:i.value)&&void 0!==o?o:"")}catch(t){console.error(t)}}))}catch(e){t.log.error(e)}}))),c.push(h.grid.onCellValueEdited.subscribe((t=>Ct(this,void 0,void 0,(function*(){var e,n,i,o;try{if((null===(e=t.tableColumn)||void 0===e?void 0:e.name)===d)return void(yield this.saveCampaign(void 0,!1));if((null===(n=t.tableColumn)||void 0===n?void 0:n.name)!==this.molColName)return;const a=t.cell.value,s=t.tableRowIndex;(null===(i=this.dataFrame.col(m))||void 0===i?void 0:i.get(s))&&""!==(null===(o=this.dataFrame.col(m))||void 0===o?void 0:o.get(s))||this.dataFrame.col(m).set(s,pt(this.dataFrame.col(m)),!1);const r=this.template.compute;if(!a||""===a)return;const l=yield dt(a,r.descriptors.args,r.functions,r.scripts);for(const t of l.columns.toList())t.name!==p&&(this.dataFrame.columns.contains(t.name)||(this.dataFrame.columns.addNew(t.name,t.type).semType=t.semType),this.dataFrame.col(t.name).set(s,t.get(0),!1));this.dataFrame.fireValuesChanged(),this.saveCampaign(void 0,!1)}catch(t){console.error(t)}})))));const o=t.events.onViewRemoved.subscribe((t=>{t.id===h.id&&(c.forEach((t=>t.unsubscribe())),o.unsubscribe())}))}))),300);const v=null==h?void 0:h.getRibbonPanels();if(v&&!U(v)){const e=()=>Ct(this,void 0,void 0,(function*(){var t;G((t=>Ct(this,void 0,void 0,(function*(){var e,n,i,a,s;const r=this.template.compute.descriptors.args,l=this.template.compute.functions,c=null!==(e=this.template.compute.scripts)&&void 0!==e?e:[],u=t.descriptors,d={descriptors:{enabled:!!(null===(n=null==t?void 0:t.descriptors)||void 0===n?void 0:n.length),args:null!==(i=null==t?void 0:t.descriptors)&&void 0!==i?i:[]},functions:Object.entries(null!==(a=null==t?void 0:t.externals)&&void 0!==a?a:{}).map((([t,e])=>{const n=t.split(":");return{name:n[1],package:n[0],args:e}})),scripts:Object.entries(null!==(s=null==t?void 0:t.scripts)&&void 0!==s?s:{}).filter((([t,e])=>t.startsWith(f)&&3===t.split(":").length)).map((([t,e])=>{var n,i;const o=t.split(":");return{name:null!==(n=o[1])&&void 0!==n?n:"",id:null!==(i=o[2])&&void 0!==i?i:"",args:e}}))};this.template.compute=d,this.campaign.template=this.template;const m=u.filter((t=>!r.includes(t))),v=d.functions.filter((t=>{if(!l.some((e=>e.name===t.name&&e.package===t.package)))return!0;const 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Date(i.date).toLocaleDateString():l[n]=i:o&&o.type===e.SEMTYPE.MOLECULE&&i&&(l[n]=t.chem.drawMolecule(i))})),Object.assign(Object.assign({Template:null!==(s=null===(a=this.template)||void 0===a?void 0:a.name)&&void 0!==s?s:"Molecules","File path":(()=>{const e=o.icons.edit((()=>{const n=r(),s=o.stringInput("Path",n),l=s.root.getElementsByTagName("label").item(0);l&&l.remove(),s.root.style.width="100%";const c=o.button("Save",(()=>Ct(this,void 0,void 0,(function*(){const n=yield function(){return Ct(this,void 0,void 0,(function*(){const e=s.value;return e&&""!==e.trim()?!!(yield t.dapi.files.exists(e))||(t.shell.error("Given folder does not exist"),!1):(t.shell.error("Path can not be empty"),!1)}))}();if(!n)return;const l=s.value;l.endsWith("/")?this._filePath=`${l}${this.campaignId}/enriched_table.csv`:this._filePath=`${l}/${this.campaignId}/enriched_table.csv`,this._campaign&&(this._campaign.savePath=this._filePath),yield this.saveCampaign(void 0,!0),o.empty(a);const c=r();i=o.link(c,(()=>{var t,e,n;return this.download(this.dataFrame,null!==(n=null!==(t=this.campaignId)&&void 0!==t?t:null===(e=this._campaign)||void 0===e?void 0:e.name)&&void 0!==n?n:"Molecules")}),w),a.appendChild(i),a.appendChild(e)})))),u=o.button("Cancel",(()=>{o.empty(a),a.appendChild(i),a.appendChild(e)}));o.empty(a),s.addOptions(u),s.addOptions(c),a.appendChild(s.root)}),"Edit file path");e.style.marginLeft="5px";const n=r();let i=o.link(n,(()=>{var t,e,n;return this.download(this.dataFrame,null!==(n=null!==(t=this.campaignId)&&void 0!==t?t:null===(e=this._campaign)||void 0===e?void 0:e.name)&&void 0!==n?n:"Molecules")}),w);const a=o.divH([i,e],{style:{alignItems:"center"}});return a})()},l),{"Number of molecules":(this.dataFrame.rowCount-this._extraStageColsCount).toString(),"Enrichment methods":[this.template.compute.descriptors.enabled?"descriptors":"",...this.template.compute.functions.map((t=>t.name))].filter((t=>t&&""!==t.trim())).join(", ")})}saveCampaign(n,i=!0){var o,a,s,r,l,c,u,d;return Ct(this,void 0,void 0,(function*(){const p=this.campaignId,h=this.template.name,f=this.dataFrame,v=p,g={};f.columns.toList().forEach((t=>g[t.name]=t.semType));const y={name:v,templateName:h,status:null!==(a=null!=n?n:null===(o=this.campaign)||void 0===o?void 0:o.status)&&void 0!==a?a:"In Progress",createDate:null!==(r=null===(s=this.campaign)||void 0===s?void 0:s.createDate)&&void 0!==r?r:j(new Date),campaignFields:null!==(c=null===(l=this.campaign)||void 0===l?void 0:l.campaignFields)&&void 0!==c?c:this.campaignProps,columnSemTypes:g,rowCount:null!==(d=null===(u=f.col(m))||void 0===u?void 0:u.toList().filter((t=>"StageDefiningRow"!==t)).length)&&void 0!==d?d:0,filteredRowCount:f.filter.trueCount,savePath:this._filePath};console.log(this._filePath);const b=e.DataFrame.fromColumns(f.columns.toList().filter((t=>!t.name.startsWith("~")))).toCsv();yield t.dapi.files.writeAsText(this._filePath,b);const w=this._designView.saveLayout();return w?y.layout=w.viewState:t.shell.warning("Layout cound not be saved"),y.template=this.template,yield It.files.writeAsText(`Hit Design/campaigns/${p}/campaign.json`,JSON.stringify(y)),i&&t.shell.info("Campaign saved successfully."),this.campaign=y,y}))}}class Tt extends e.GridCellRenderer{get name(){return"customGasteigerPNG"}get cellType(){return"customGasteigerPNG"}get defaultHeight(){return 200}get defaultWidth(){return 200}render(t,e,n,i,o,a,s){if(a.gridRow<0||!a.cell.value)return;const r=a.cell.value,l=new Image(i-2,o-2);l.src="data:image/png;base64,"+r,l.onload=function(){t.drawImage(l,e+2,n+2,i-2,o-2)}}}var xt=function(t,e,n,i){return new(n||(n=Promise))((function(o,a){function s(t){try{l(i.next(t))}catch(t){a(t)}}function r(t){try{l(i.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,r)}l((i=i.apply(t,e||[])).next())}))};const It=new e.Package;function Nt(){return xt(this,void 0,void 0,(function*(){const 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1
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a.Name&&""!==a.Name&&a.Type&&(null!==(t=a.Required)&&void 0!==t||(a.Required=!1),e.push({name:a.Name,type:a.Type,required:a.Required})),e},fieldsDiv:o.div([r])}}var X=function(t,e,n,i){return new(n||(n=Promise))((function(o,a){function s(t){try{l(i.next(t))}catch(t){a(t)}}function r(t){try{l(i.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,r)}l((i=i.apply(t,e||[])).next())}))};class tt extends e.ViewBase{constructor(t){super(),this.app=t}get template(){return this.app.template}onActivated(){}onReset(){}process(){return X(this,void 0,void 0,(function*(){}))}deleteCampaign(t,e){return X(this,void 0,void 0,(function*(){yield It.files.delete(`${t}/campaigns/${e}`)}))}}var et=function(t,e,n,i){return new(n||(n=Promise))((function(o,a){function s(t){try{l(i.next(t))}catch(t){a(t)}}function r(t){try{l(i.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,r)}l((i=i.apply(t,e||[])).next())}))};class nt extends tt{constructor(e){super(e),this.readmePath=It.webRoot+"README_HT.md",this.deletedCampaigns=[],this.name="Hit Triage",t.shell.windows.showHelp=!0,t.shell.windows.help.showHelp(this.readmePath),this.checkCampaign().then((t=>{this.app.campaign=t,this.init()}))}onActivated(){t.shell.windows.showHelp=!0,t.shell.windows.help.showHelp(this.readmePath)}init(t){return et(this,void 0,void 0,(function*(){const e=o.h1(A),n=o.h1(T,{style:{marginLeft:"10px"}}),i=o.div([o.h1("Process, analyse and filter molecules for your needs using Hit Triage:"),o.div(o.markdown("- Configure your own workflow using the template editor.\n- Calculate different molecular properties.\n- Filter molecules using different criteria.\n- Submit processed dataframe to the function of your choice.\n- Save campaigns and continue any time from where you left off.\n "),{style:{color:"var(--grey-5)"},classes:"mb-small"}),o.link("Read more","https://github.com/datagrok-ai/public/tree/master/packages/HitTriage")]),a=o.div(),s=o.div([],{classes:"ui-form"}),r=yield this.getCampaignsTable();q()(this.root).empty(),this.root.appendChild(o.div([i,e,r,n,s,a])),this.startNewCampaign(a,s,t).then((()=>this.app.resetBaseUrl()))}))}startNewCampaign(t,e,n){var i;return et(this,void 0,void 0,(function*(){const a=(yield It.files.list("Hit Triage/templates")).map((t=>t.name.slice(0,-5)));n&&!a.includes(n.name)&&a.push(n.name);const s=()=>et(this,void 0,void 0,(function*(){const e=r.value,i=n&&n.name===e?n:JSON.parse(yield It.files.readAsText("Hit Triage/templates/"+e+".json")),o=yield this.getNewCampaignAccordeon(i);q()(t).empty(),t.className="ui-form",t.appendChild(o)})),r=o.choiceInput("Template",null!==(i=null==n?void 0:n.name)&&void 0!==i?i:a[0],a,(()=>et(this,void 0,void 0,(function*(){yield s()})))),l=o.icons.add((()=>{this.createNewTemplate()}),g);r.addOptions(l),yield s(),q()(e).empty(),e.appendChild(r.root)}))}checkCampaign(t){return et(this,void 0,void 0,(function*(){const e=location.search,n=new URLSearchParams(e);if(!n.has(a)&&!t)return;const i=null!=t?t:n.get(a);if(!(yield It.files.exists(`Hit Triage/campaigns/${i}/campaign.json`)))return;const o=JSON.parse(yield It.files.readAsText(`Hit Triage/campaigns/${i}/campaign.json`)),s=JSON.parse(yield It.files.readAsText(`Hit Triage/templates/${o.templateName}.json`));return this.app.setTemplate(s,o.filters,i,o.ingest),t&&R(a,t),o}))}getCampaignsTable(){return et(this,void 0,void 0,(function*(){const t=(yield It.files.list("Hit Triage/campaigns")).filter((t=>-1===this.deletedCampaigns.indexOf(t.name))),e={};for(const n of t){const t=JSON.parse(yield It.files.readAsText(`Hit Triage/campaigns/${n.name}/campaign.json`));e[t.name]=t}const n=Object.values(e).map((t=>({name:t.name,createDate:t.createDate,rowCount:t.rowCount,filtered:t.filteredRowCount,status:t.status}))),i=o.table(n,(t=>[o.link(t.name,(()=>this.setCampaign(t.name)),"",""),t.createDate,t.rowCount,t.filtered,t.status,o.icons.delete((()=>et(this,void 0,void 0,(function*(){o.dialog("Delete campaign").add(o.divText(`Are you sure you want to delete campaign ${t.name}?`)).onOK((()=>et(this,void 0,void 0,(function*(){yield this.deleteCampaign("Hit Triage",t.name),this.deletedCampaigns.push(t.name),yield this.init()})))).show()}))),"Delete campaign")]),["Name","Created","Total","Selected","Status",""]);return i.style.color="var(--grey-5)",i}))}setCampaign(t){return et(this,void 0,void 0,(function*(){const e=yield this.checkCampaign(t);this.app.campaign=e}))}getNewCampaignAccordeon(n){return et(this,void 0,void 0,(function*(){const{root:i,promise:a,cancelPromise:s}=function(n){var i,a;const s=o.divText("",{style:{color:"red"}});let r=null;const c=()=>Y(this,void 0,void 0,(function*(){try{if(r=u.value,!r)return;if(yield r.meta.detectSemanticTypes(),!r.columns.bySemType(e.SEMTYPE.MOLECULE))return void(s.innerText="No molecules column found");s.innerText=""}catch(t){s.innerText="Error parsing file"}})),u=o.tableInput("Dataframe",null,void 0,c);c();const d=o.div([u,s]),p=e.Func.find({tags:[l]}),m={};p.forEach((t=>{var e;m[null!==(e=t.friendlyName)&&void 0!==e?e:t.name]=t}));let h=null;const f=()=>Y(this,void 0,void 0,(function*(){const t=m[b.value];h=t.prepare();const e=yield h.getEditor();e.classList.remove("ui-form"),g.innerHTML="",g.appendChild(e)})),g=o.div([]),b=o.choiceInput(v,null!==(i=n.queryFunctionName)&&void 0!==i?i:Object.keys(m)[0],Object.keys(m),f);f(),n.queryFunctionName&&(null===(a=b.root.getElementsByTagName("select").item(0))||void 0===a||a.setAttribute("disabled","true"));const w=o.div([b,g]);w.style.display="none";const A=o.div([d,w]),T=n.campaignFields.map((t=>t.type===e.SEMTYPE.MOLECULE?Object.assign(Object.assign({},t),{type:"String",semtype:e.SEMTYPE.MOLECULE}):t)).map((t=>e.Property.fromOptions(Object.assign({name:t.name,type:$[t.type],nullable:!t.required},t.semtype?{semType:t.semtype}:{})))),x={},I=T.length?o.input.form(x,T):o.div();I.classList.remove("ui-form"),"File"===n.dataSourceType?(d.style.display="inherit",w.style.display="none"):(d.style.display="none",w.style.display="inherit");const N=o.div([A,...T.length?[I]:[]]),_=o.buttonsInput([]);return N.appendChild(_),{promise:new Promise((e=>{const i=()=>Y(this,void 0,void 0,(function*(){if("File"===n.dataSourceType){if(!r)return void t.shell.error("No file selected");const n=r;n.name=r.name,e({df:n,type:"File",campaignProps:x})}else{const n=m[b.value];if(!n)return void t.shell.error("No function selected");const i={};Object.entries(h.inputs).forEach((([t,e])=>{i[t]=e}));const o=yield n.apply(i);e({df:o,type:"Query",campaignProps:x})}})),a=o.bigButton(y,(()=>i()));_.appendChild(a)})),root:N,cancelPromise:new Promise((t=>{o.button(C,(()=>t()))}))}}(n);return a.then((t=>et(this,void 0,void 0,(function*(){this.app.dataFrame=t.df,this.app._fileInputType=t.type,yield this.app.setTemplate(n),this.app.campaignProps=t.campaignProps,this.app.saveCampaign(void 0,!1)})))),s.then((()=>{this.init()})),i}))}createNewTemplate(){return et(this,void 0,void 0,(function*(){const n=yield K(),i=new e.ViewBase,o=t.shell.v;i.name="New Template",i.root.appendChild(n.root),i.parentCall=this.app.parentCall,t.shell.addView(i),i.path=new URL(this.app.baseUrl).pathname+"/new-template",i.parentView=o;const{sub:a}=M(t.shell.v,"Hit Triage",g,(()=>{t.shell.v=o,i.close()}));n.template.then((e=>et(this,void 0,void 0,(function*(){yield this.init(e),i.close(),H(i),t.shell.v=o,a.unsubscribe()})))),n.cancelPromise.then((()=>{a.unsubscribe(),i.close(),t.shell.v=o}))}))}}class it extends tt{constructor(t){super(t),this.name="Submit"}render(){return o.empty(this.root),o.divV([o.h1("Summary"),o.div([o.tableFromMap(this.app.getSummary())])])}onActivated(){this.render()}submit(){var n,i,o,a,s;return i=this,o=void 0,s=function*(){const i=null===(n=this.app.template)||void 0===n?void 0:n.submit;if(!i)return;const o=e.Func.find({name:i.fName,package:i.package})[0];if(!o)return void t.shell.error(`Function ${i.fName} not found.`);const a=e.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield o.apply({df:a,molecules:this.app.molColName}),this.app.campaign&&(this.app.campaign.status="Submitted"),this.app.saveCampaign("Submitted"),t.shell.info("Submitted successfully.")},new((a=void 0)||(a=Promise))((function(t,e){function n(t){try{l(s.next(t))}catch(t){e(t)}}function r(t){try{l(s.throw(t))}catch(t){e(t)}}function l(e){var i;e.done?t(e.value):(i=e.value,i instanceof a?i:new a((function(t){t(i)}))).then(n,r)}l((s=s.apply(i,o||[])).next())}))}}class ot{constructor(t){this.parentCall=t,this.resetBaseUrl()}resetBaseUrl(){const t=window.location.href,e=new URL(t);this.baseUrl=e.origin+e.pathname}getFilterType(t){const n=this.dataFrame.col(t);return(null==n?void 0:n.semType)===e.SEMTYPE.MOLECULE?e.FILTER_TYPE.SUBSTRUCTURE:(null==n?void 0:n.type)===e.COLUMN_TYPE.BOOL?e.FILTER_TYPE.BOOL_COLUMNS:(null==n?void 0:n.type)===e.COLUMN_TYPE.STRING?e.FILTER_TYPE.CATEGORICAL:e.FILTER_TYPE.HISTOGRAM}download(t,n,i=!1){const o=document.createElement("a"),a=e.DataFrame.fromColumns(t.columns.toList().filter((t=>!t.name.startsWith("~")))).toCsv({filteredRowsOnly:i});o.setAttribute("href","data:text/plain;charset=utf-8,"+encodeURIComponent(a)),o.setAttribute("download",n+".csv"),o.click()}getNewCampaignName(t,e){return n=this,i=void 0,a=function*(){const n=(yield It.files.list(t)).map((t=>t.name)).filter((t=>t.startsWith(e)));if(0===n.length)return e+"-1";const i=n.map((t=>t.split("-")[1])).filter(Boolean).map((t=>parseInt(t,10))).sort();return e+"-"+(i[i.length-1]+1).toString()},new((o=void 0)||(o=Promise))((function(t,e){function s(t){try{l(a.next(t))}catch(t){e(t)}}function r(t){try{l(a.throw(t))}catch(t){e(t)}}function l(e){var n;e.done?t(e.value):(n=e.value,n instanceof o?n:new o((function(t){t(n)}))).then(s,r)}l((a=a.apply(n,i||[])).next())}));var n,i,o,a}setBaseUrl(){const t=document.title;if(history.replaceState){const e={Title:t,Url:this.baseUrl};history.replaceState(e,e.Title,e.Url)}}}var at=function(t,e,n,i){return new(n||(n=Promise))((function(o,a){function s(t){try{l(i.next(t))}catch(t){a(t)}}function r(t){try{l(i.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,r)}l((i=i.apply(t,e||[])).next())}))},st=function(t,e,n,i){return new(n||(n=Promise))((function(o,a){function s(t){try{l(i.next(t))}catch(t){a(t)}}function r(t){try{l(i.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,r)}l((i=i.apply(t,e||[])).next())}))};class rt extends ot{constructor(n){super(n),this._filterViewName="Hit triage | Pick",this._filterDescriptions=[],this.campaignProps={},this._pickViewPromise=null,this._infoView=new nt(this),this.multiView=new e.MultiView({viewFactories:{[this._infoView.name]:()=>this._infoView}}),this.multiView.tabs.onTabChanged.subscribe((t=>{this.multiView.currentView instanceof tt&&this.multiView.currentView.onActivated()})),this.multiView.parentCall=n,t.shell.addView(this.multiView),t.events.onCurrentViewChanged.subscribe((()=>{var e,n,i,o;try{(null===(e=t.shell.v)||void 0===e?void 0:e.name)===this.currentPickViewId&&(t.shell.windows.showHelp=!1,this.setBaseUrl(),R(a,null!==(o=null!==(n=this._campaignId)&&void 0!==n?n:null===(i=this._campaign)||void 0===i?void 0:i.name)&&void 0!==o?o:""))}catch(t){console.error(t)}}))}setTemplate(n,i,o,s){var r,l,c,u,d,p,m,h,f,v,g;return st(this,void 0,void 0,(function*(){if((null===(r=this._pickView)||void 0===r?void 0:r.dataFrame)&&t.shell.closeTable(null===(l=this._pickView)||void 0===l?void 0:l.dataFrame),this._pickView=void 0,o?s&&(this._fileInputType=s.type,"File"===s.type?this.dataFrame=yield t.dapi.files.readCsv(s.query):this.dataFrame=yield t.functions.call(s.query)):(o=yield this.getNewCampaignName("Hit Triage/campaigns",n.key),R(a,o)),!this.dataFrame)return void console.error("Dataframe is empty.");if((null===(c=this._campaign)||void 0===c?void 0:c.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach((([t,e])=>{const n=this.dataFrame.columns.byName(t);n&&(n.semType=e)})),yield this.dataFrame.meta.detectSemanticTypes(),this._molColName=null!==(d=null===(u=this.dataFrame.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===u?void 0:u.name)&&void 0!==d?d:void 0,this._dfName=null!==(p=this.dataFrame.name)&&void 0!==p?p:null==s?void 0:s.query,this.dataFrame.name=null!==(h=null!==(m=this._dfName)&&void 0!==m?m:this.dataFrame.name)&&void 0!==h?h:"Molecules",this._campaignId=o,this.template=n,this._campaignFilters=i,!i){const t={};n.compute.functions.forEach((e=>{const n=`${e.package}:${e.name}`;t[n]=e.args})),yield this.calculateColumns({descriptors:n.compute.descriptors.enabled?n.compute.descriptors.args:[],externals:t})}const y=t.shell.v,b=t.shell.addView(this.pickView);this.currentPickViewId=b.name,this._submitView=new it(this),this.setBaseUrl(),R(a,null!==(g=null!==(f=this._campaignId)&&void 0!==f?f:null===(v=this._campaign)||void 0===v?void 0:v.name)&&void 0!==g?g:"");const w=b;setTimeout((()=>{this._pickViewPromise&&this._pickViewPromise.then((()=>{const{sub:e}=M(w,"Hit Triage","Pick",(()=>{t.shell.v=y,w.close(),e.unsubscribe()}))}))}),300),t.shell.windows.showHelp=!1}))}get filterSettings(){return this._campaignFilters}get campaignId(){return this._campaignId}get pickView(){return this._pickView=this.getFilterView()}get molColName(){var t,n,i;return null!==(t=this._molColName)&&void 0!==t?t:this._molColName=null===(i=null===(n=this.dataFrame)||void 0===n?void 0:n.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===i?void 0:i.name}get fileInputType(){return this._fileInputType}get campaign(){return this._campaign}set campaign(t){this._campaign=t}calculateColumns(n,i){var o;return st(this,void 0,void 0,(function*(){const a=this.dataFrame.columns.names();n.descriptors&&n.descriptors.length>0&&(yield t.chem.descriptors(this.dataFrame,this.molColName,n.descriptors));for(const t of Object.keys(n.externals)){const i=n.externals[t],o=e.Func.find({package:t.split(":")[0],name:t.split(":")[1]})[0],a=o.inputs[0].name,s=o.inputs[1].name;i&&(yield o.apply(Object.assign(Object.assign({},i),{[a]:this.dataFrame,[s]:this.molColName})))}for(const e of Object.keys(null!==(o=n.scripts)&&void 0!==o?o:{})){const i=n.scripts[e];if(i)try{const n=yield t.dapi.scripts.find(e);if(!n)continue;const o=n.inputs[0].name,a=n.inputs[1].name;yield n.apply(Object.assign(Object.assign({},i),{[o]:this.dataFrame,[a]:this.molColName}))}catch(t){console.error(t)}}if(i){const t=i.getFiltersGroup();this.dataFrame.columns.names().filter((t=>!a.includes(t))).forEach((e=>{t.add({type:this.getFilterType(e),column:e})}))}}))}getFilterView(){let t=null;this._pickViewPromise=new Promise((e=>{t=e})),this.dataFrame.col(u)||this.dataFrame.columns.addNewBool(u).init(!1);const n=e.TableView.create(this.dataFrame,!1),i=n.getRibbonPanels(),a=o.iconFA("wrench",(()=>st(this,void 0,void 0,(function*(){G((t=>st(this,void 0,void 0,(function*(){this.calculateColumns(t,n)}))),(()=>null),this.template,!0)}))),"Calculate additional properties"),s=o.bigButton("Submit",(()=>{var t;const e=null===(t=this._submitView)||void 0===t?void 0:t.render();if(e){const t=o.dialog("Submit");t.add(e),t.addButton("Save",(()=>{this.saveCampaign(),t.close()})),t.addButton("Submit",(()=>{var e;null===(e=this._submitView)||void 0===e||e.submit(),t.close()})),t.show()}}));s.classList.add("hit-design-submit-button");const r=U(i);return i.push([a,...r?[]:[s]]),n.setRibbonPanels(i),n.name=this._filterViewName,setTimeout((()=>st(this,void 0,void 0,(function*(){var i;n._onAdded(),yield new Promise((t=>setTimeout(t,1e3)));const o=n.filters(this._campaignFilters?{filters:this._campaignFilters}:void 0);if(null===(i=this._campaign)||void 0===i?void 0:i.layout)try{const t=e.ViewLayout.fromViewState(this._campaign.layout);n.loadLayout(t)}catch(t){console.error(t)}n.dataFrame.onFilterChanged.subscribe((t=>{this._filterDescriptions=Array.from(n.dataFrame.rows.filters),this._campaignFilters=o.getOptions().look.filters})),setTimeout((()=>{this._filterDescriptions=Array.from(n.dataFrame.rows.filters),this._campaignFilters=o.getOptions().look.filters}),300),t&&t()}))),300),n.parentCall=this.parentCall,n}getSummary(){var t,e,n,i,a,s,r;const l=null!==(e=null===(t=this.campaign)||void 0===t?void 0:t.campaignFields)&&void 0!==e?e:this.campaignProps;return Object.assign(Object.assign({Template:null!==(i=null===(n=this.template)||void 0===n?void 0:n.name)&&void 0!==i?i:"Molecules","File path":o.divH([o.link(null!==(a=this._dfName)&&void 0!==a?a:"-",(()=>this.download(this.dataFrame,"molecules")),w)],{style:{alignItems:"center"}})},l),{"Number of molecules":this.dataFrame.rowCount.toString(),"Enrichment methods":[this.template.compute.descriptors.enabled?"descriptors":"",...this.template.compute.functions.map((t=>t.name))].filter((t=>t&&""!==t.trim())).join(", "),Filters:this._filterDescriptions.join(", "),"Result Molecules":o.divH([o.link(null!==(r=null===(s=this.dataFrame)||void 0===s?void 0:s.filter.trueCount.toString())&&void 0!==r?r:"0",(()=>{this.download(this.dataFrame,"hits",!0)}),w)],{style:{alignItems:"center"}})})}saveCampaign(n,i=!0){var a,s,r,l,c,u;return st(this,void 0,void 0,(function*(){const d=this.campaignId,p=this.filterSettings,m=this.template.name,h=this.dataFrame,f=`System:AppData/HitTriage/Hit Triage/campaigns/${d}/`,v=null!=d?d:yield function(t){return at(this,void 0,void 0,(function*(){return new Promise((e=>at(this,void 0,void 0,(function*(){const n=o.stringInput("Campaign name","");o.dialog("Save Campaign").add(o.div(n.root)).onOK((function(){n.value&&""!==n.value?e(n.value):e(t)})).show()}))))}))}(d),g={};h.columns.toList().forEach((t=>g[t.name]=t.semType));const y={name:v,templateName:m,filters:null!=p?p:{},ingest:{type:"File",query:`${f}enriched_table.csv`,molColName:this.molColName},status:null!==(s=null!=n?n:null===(a=this.campaign)||void 0===a?void 0:a.status)&&void 0!==s?s:"In Progress",createDate:null!==(l=null===(r=this.campaign)||void 0===r?void 0:r.createDate)&&void 0!==l?l:j(new Date),campaignFields:null!==(u=null===(c=this.campaign)||void 0===c?void 0:c.campaignFields)&&void 0!==u?u:this.campaignProps,columnSemTypes:g,rowCount:h.rowCount,filteredRowCount:h.filter.trueCount},b=e.DataFrame.fromColumns(h.columns.toList().filter((t=>!t.name.startsWith("~")))).toCsv();yield It.files.writeAsText(`Hit Triage/campaigns/${d}/enriched_table.csv`,b);const w=this._pickView.saveLayout();w?y.layout=w.viewState:t.shell.warning("Layout cound not be saved"),yield It.files.writeAsText(`Hit Triage/campaigns/${d}/campaign.json`,JSON.stringify(y)),i&&t.shell.info("Campaign saved successfully.")}))}}var lt=n(290),ct={};ct.styleTagTransform=V(),ct.setAttributes=B(),ct.insert=S().bind(null,"head"),ct.domAPI=_(),ct.insertStyleElement=O(),I()(lt.Z,ct),lt.Z&&lt.Z.locals&&lt.Z.locals;var ut;!function(e){let n,i;!function(t){t.vert=function(t){return o.divV(t.map((t=>o.render(t))),{classes:"u2-panel"})},t.horz=function(t){return o.divH(t.map((t=>o.render(t))),{classes:"u2-panel"})}}(n=e.panels||(e.panels={})),e.appHeader=function(t){const e=o.iconImage("",t.iconPath);return q()(e).addClass("ui-app-header-icon").css("margin-right","20px"),n.horz([e,n.vert([o.markdown(t.description),t.learnMoreUrl?o.link("Learn more",t.learnMoreUrl):null])])},function(e){e.runAsync=function(e,n){return i=this,a=void 0,r=function*(){o.setUpdateIndicator(e,!0);try{return yield n()}catch(e){t.log.error(e)}finally{o.setUpdateIndicator(e,!1)}},new((s=void 0)||(s=Promise))((function(t,e){function n(t){try{l(r.next(t))}catch(t){e(t)}}function o(t){try{l(r.throw(t))}catch(t){e(t)}}function l(e){var i;e.done?t(e.value):(i=e.value,i instanceof s?i:new s((function(t){t(i)}))).then(n,o)}l((r=r.apply(i,a||[])).next())}));var i,a,s,r}}(i=e.tools||(e.tools={}))}(ut||(ut={}));function dt(n,i,o,a=[]){return s=this,r=void 0,c=function*(){const s=e.Column.fromStrings(p,[n]),r=e.DataFrame.fromColumns([s]);yield r.meta.detectSemanticTypes(),i.length&&(yield t.chem.descriptors(r,s.name,i));for(const e of o){const n=e.args,i=yield t.functions.find(`${e.package}:${e.name}`);if(!i)continue;const o=i.inputs[0].name,a=i.inputs[1].name;yield i.apply(Object.assign(Object.assign({},n),{[o]:r,[a]:s.name}))}for(const e of a){const n=e.args;try{const i=yield t.dapi.scripts.find(e.id);if(i){const t=i.inputs[0].name,e=i.inputs[1].name;yield i.apply(Object.assign(Object.assign({},n),{[t]:r,[e]:s.name}))}}catch(t){console.error(t)}}return r},new((l=void 0)||(l=Promise))((function(t,e){function n(t){try{o(c.next(t))}catch(t){e(t)}}function i(t){try{o(c.throw(t))}catch(t){e(t)}}function o(e){var o;e.done?t(e.value):(o=e.value,o instanceof l?o:new l((function(t){t(o)}))).then(n,i)}o((c=c.apply(s,r||[])).next())}));var s,r,l,c}function pt(t){let e=0;if(t.length>1)for(const n of t.toList()){if(!n||!n.startsWith(h[0])||n.length!==h.length)continue;const t=parseInt(n.substring(1));isNaN(t)||(e=Math.max(t,e))}return`V${"".concat(...new Array(h.length-1-(e+1).toString().length).fill("0"))}${e+1}`}var mt=function(t,e,n,i){return new(n||(n=Promise))((function(o,a){function s(t){try{l(i.next(t))}catch(t){a(t)}}function r(t){try{l(i.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,r)}l((i=i.apply(t,e||[])).next())}))};function ht(n){var i,a,s,l,u,d,p,m,h,v,g;return mt(this,void 0,void 0,(function*(){const y=e.Func.find({tags:[r]}),w=yield It.files.list("Hit Design/templates");let A=!1,T=!1;const x=w.map((t=>t.name.slice(0,-5))),I=[];for(const t of w)try{const e=JSON.parse(yield It.files.readAsText(t));I.push(e.key)}catch(t){console.error(t)}const N=e.Func.find({tags:[c]}),_={};N.forEach((t=>{var e;_[null!==(e=t.friendlyName)&&void 0!==e?e:t.name]=t}));const E=o.choiceInput("Submit function",null,[null,...Object.keys(_)]);E.nullable=!0,E.value=null!==(a=null===(i=null==n?void 0:n.submit)||void 0===i?void 0:i.fName)&&void 0!==a?a:null,E.setTooltip("Select function to be called upon submitting");const S=o.divText("Template name is empty or already exists",{classes:"hit-triage-error-div"}),F=o.divText("Template key is empty or already exists",{classes:"hit-triage-error-div"});function B(){var t,e,n,i;if(""===P.value||x.includes(null!==(e=null===(t=P.value)||void 0===t?void 0:t.trim())&&void 0!==e?e:"")){const t=null!==(n=P.input.offsetLeft)&&void 0!==n?n:0,e=null!==(i=P.input.offsetWidth)&&void 0!==i?i:0;S.style.marginLeft=`${t}px`,S.style.width=`${e}px`,S.style.opacity="100%",S.style.borderTop="1px solid red",A=!0}else S.style.borderTop="none",S.style.opacity="0%",A=!1}const P=o.stringInput("Name",null!==(s=null==n?void 0:n.name)&&void 0!==s?s:"",B);function O(){var t,e,n,i;if(""===k.value||I.includes(null!==(e=null===(t=k.value)||void 0===t?void 0:t.trim())&&void 0!==e?e:"")){const t=null!==(n=k.input.offsetLeft)&&void 0!==n?n:0,e=null!==(i=k.input.offsetWidth)&&void 0!==i?i:0;F.style.marginLeft=`${t}px`,F.style.width=`${e}px`,F.style.borderTop="1px solid red",F.style.opacity="100%",T=!0}else F.style.opacity="0%",F.style.borderTop="none",T=!1}const k=o.stringInput("Key",null!==(l=null==n?void 0:n.key)&&void 0!==l?l:"",O);k.setTooltip("Template key used for campaign prefix"),P.setTooltip("Template name"),P.root.style.borderBottom="none",k.root.style.borderBottom="none",S.style.opacity="0%",F.style.opacity="0%";const V={Descriptors:"Descriptors"};y.forEach((t=>{var e;V[null!==(e=t.friendlyName)&&void 0!==e?e:t.name]=`${t.package.name}:${t.name}`}));let L=null;const D={compute:{descriptors:{enabled:!0,args:null!==(p=null===(d=null===(u=null==n?void 0:n.compute)||void 0===u?void 0:u.descriptors)||void 0===d?void 0:d.args)&&void 0!==p?p:[]},functions:null!==(h=null===(m=null==n?void 0:n.compute)||void 0===m?void 0:m.functions)&&void 0!==h?h:[]}},j=yield G((t=>{L=t}),(()=>null),D,!1);j.root.classList.add("hit-triage-new-template-functions-input");const R=Q(null==n?void 0:n.campaignFields),M=function(t){const n=[e.Property.fromOptions({name:"Name",type:e.TYPE.STRING})],i=new Z(n,t?t.map((t=>({Name:t}))):void 0,{horizontalInputNames:!0});let o={};return i.onItemAdded.subscribe((t=>{o=null!=t?t:{}})),i.onAddingItemChanged.subscribe((t=>{t&&(o=t.item)})),{getFields:function(){const t=i.items.filter((t=>t.Name)).map((t=>t.Name));return o.Name&&""!==o.Name&&t.push(o.Name),t},fieldsDiv:i.root}}(null==n?void 0:n.stages),H=o.divV([o.divV([P,S]),o.divV([k,F]),R.fieldsDiv]),U=o.h2("Stages");o.tooltip.bind(U,'Define Stages for designed molecules. For example, "Design", "Synthesis", "Test", etc.');const $=o.h2("Compute");o.tooltip.bind($,'Define functions to be calculated for each molecule. For example, "Descriptors", "Descriptors:Descriptors", etc.');const Y=o.div([o.h2("Details"),H,U,M.fieldsDiv,$,j.root,o.h2("Submit"),E.root],"ui-form"),W=o.buttonsInput([]);Y.appendChild(W);const q=null!==(g=null===(v=W.getElementsByClassName("ui-input-editor"))||void 0===v?void 0:v[0])&&void 0!==g?g:W,J=new Promise((t=>{const e=o.button(C,(()=>t()));q.appendChild(e)})),z=new Promise((e=>{const n=o.bigButton(b,(()=>function(){var n,i,o,a;return mt(this,void 0,void 0,(function*(){if(B(),O(),j.okProxy(),A||!P.value||""===P.value)return void t.shell.error("Template name is empty or already exists");if(T||!k.value||""===k.value)return void t.shell.error("Template key is empty or already exists");const s=E.value?_[E.value]:void 0,r=Object.assign({name:P.value,key:k.value,campaignFields:R.getFields(),stages:M.getFields(),compute:{descriptors:{enabled:!!(null===(n=null==L?void 0:L.descriptors)||void 0===n?void 0:n.length),args:null!==(i=null==L?void 0:L.descriptors)&&void 0!==i?i:[]},functions:Object.entries(null!==(o=null==L?void 0:L.externals)&&void 0!==o?o:{}).map((([t,e])=>{const n=t.split(":");return{name:n[1],package:n[0],args:e}})),scripts:Object.entries(null!==(a=null==L?void 0:L.scripts)&&void 0!==a?a:{}).filter((([t,e])=>t.startsWith(f)&&3===t.split(":").length)).map((([t,e])=>{var n,i;const o=t.split(":");return{name:null!==(n=o[1])&&void 0!==n?n:"",id:null!==(i=o[2])&&void 0!==i?i:"",args:e}}))}},s?{submit:{fName:s.name,package:s.package.name}}:{});var l;l=r,It.files.writeAsText(`Hit Design/templates/${l.name}.json`,JSON.stringify(l)),t.shell.info("Template created successfully"),e(r)}))}()));q.appendChild(n)}));return{root:Y,template:z,cancelPromise:J}}))}var ft=function(t,e,n,i){return new(n||(n=Promise))((function(o,a){function s(t){try{l(i.next(t))}catch(t){a(t)}}function r(t){try{l(i.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,r)}l((i=i.apply(t,e||[])).next())}))};class vt extends tt{constructor(e){super(e),this.deletedCampaigns=[],this.name="Hit Design",t.shell.windows.showHelp=!0,t.shell.windows.help.showHelp(It.webRoot+"README_HD.md"),this.checkCampaign().then((t=>{this.app.campaign=t,this.init()}))}onActivated(){t.shell.windows.showHelp=!0,t.shell.windows.help.showHelp(It.webRoot+"README_HD.md")}init(t){return ft(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0);try{const e=o.h1(A),n=o.h1(T,{style:{marginLeft:"10px"}}),i=ut.appHeader({iconPath:It.webRoot+"/images/icons/hit-design-icon.png",learnMoreUrl:"https://github.com/datagrok-ai/public/blob/master/packages/HitTriage/README_HD.md",description:"- Configure your own workflow using the template editor\n- Sketch molecules in the molecular spreadsheet\n- Annotate and share ideas with the team\n- Calculate different molecular properties\n- Save campaigns and continue from where you left off\n- Submit final selection to the function of your choice"}),a=o.div(),s=o.divH([]),r=o.div([s,a],"ui-form"),l=yield this.getCampaignsTable();q()(this.root).empty(),this.root.appendChild(o.div([o.divV([i,e],{style:{marginLeft:"10px"}}),l,n,r])),yield this.startNewCampaign(a,s,t),this.app.resetBaseUrl()}finally{o.setUpdateIndicator(this.root,!1)}}))}startNewCampaign(t,e,n){var i;return ft(this,void 0,void 0,(function*(){const a=(yield It.files.list("Hit Design/templates")).filter((t=>t.name.endsWith(".json"))).map((t=>t.name.slice(0,-5)));n&&!a.includes(n.name)&&a.push(n.name);let s=null;const r=()=>ft(this,void 0,void 0,(function*(){const e=l.value,i=n&&n.name===e?n:JSON.parse(yield It.files.readAsText("Hit Design/templates/"+e+".json"));s=i;const o=yield this.getNewCampaignAccordeon(i);q()(t).empty(),t.appendChild(o)})),l=o.choiceInput("Template",null!==(i=null==n?void 0:n.name)&&void 0!==i?i:a[0],a,(()=>ft(this,void 0,void 0,(function*(){yield r()}))));l.root.style.width="100%";const c=o.icons.add((()=>{this.createNewTemplate()}),g),u=o.icons.copy((()=>{s&&this.createNewTemplate(s)}),"Clone template");c.style.color="#2083d5",l.addOptions(u),l.addOptions(c),yield r(),q()(e).empty(),e.appendChild(l.root)}))}checkCampaign(t){var e;return ft(this,void 0,void 0,(function*(){const n=location.search,i=new URLSearchParams(n);if(!i.has(s)&&!t)return;const o=null!=t?t:i.get(s);if(!(yield It.files.exists(`Hit Design/campaigns/${o}/campaign.json`)))return;const a=JSON.parse(yield It.files.readAsText(`Hit Design/campaigns/${o}/campaign.json`));a&&(this.app.campaign=a);const r=null!==(e=a.template)&&void 0!==e?e:JSON.parse(yield It.files.readAsText(`Hit Design/templates/${a.templateName}.json`));return yield this.app.setTemplate(r,o),t&&R(s,t),a.template=r,a}))}getCampaignsTable(){return ft(this,void 0,void 0,(function*(){const t=(yield It.files.list("Hit Design/campaigns")).filter((t=>-1===this.deletedCampaigns.indexOf(t.name))),e={};for(const n of t){const t=JSON.parse(yield It.files.readAsText(`Hit Design/campaigns/${n.name}/campaign.json`));e[t.name]=t}const n=o.table(Object.values(e),(t=>[o.link(t.name,(()=>this.setCampaign(t.name)),"",""),t.createDate,t.rowCount,t.status,o.icons.delete((()=>ft(this,void 0,void 0,(function*(){o.dialog("Delete campaign").add(o.divText(`Are you sure you want to delete campaign ${t.name}?`)).onOK((()=>ft(this,void 0,void 0,(function*(){yield this.deleteCampaign("Hit Design",t.name),this.deletedCampaigns.push(t.name),yield this.init()})))).show()}))),"Delete campaign")]),["Name","Created","Molecules","Status",""]);return n.style.color="var(--grey-5)",n.style.marginLeft="24px",n}))}setCampaign(t){return ft(this,void 0,void 0,(function*(){const e=yield this.checkCampaign(t);this.app.campaign=e}))}getNewCampaignAccordeon(n){return ft(this,void 0,void 0,(function*(){const{root:i,promise:a,cancelPromise:s}=function(n){var i,a;const s=e.DataFrame.create(1),r=s.columns.addNew(p,e.TYPE.STRING);r.semType=e.SEMTYPE.MOLECULE,r.setTag(e.TAGS.UNITS,e.UNITS.Molecule.SMILES),r.set(0,null),(null===(i=null==n?void 0:n.stages)||void 0===i?void 0:i.length)>0&&s.columns.addNew(d,e.TYPE.STRING).set(0,n.stages[0]);const l=s.columns.addNew(m,e.TYPE.STRING);l.set(0,pt(l));const c=n.campaignFields.map((t=>t.type===e.SEMTYPE.MOLECULE?Object.assign(Object.assign({},t),{type:"String",semtype:e.SEMTYPE.MOLECULE}):t)).map((t=>e.Property.fromOptions(Object.assign({name:t.name,type:$[t.type],nullable:!t.required},t.semtype?{semType:t.semtype}:{})))),u={},h=o.input.form(u,c);h.classList.remove("ui-form");const f=o.div([...(null===(a=n.campaignFields)||void 0===a||a.length,[]),h]),v=o.buttonsInput([]);return f.appendChild(v),{promise:new Promise((e=>{const i=o.bigButton(y,(()=>{for(const e of n.campaignFields)if(e.required&&(!u[e.name]||""===u[e.name]))return void t.shell.error(`Field '${e.name}' is required`);e({df:s,campaignProps:u})}));v.appendChild(i)})),root:f,cancelPromise:new Promise((t=>{o.button(C,(()=>t()))}))}}(n);return a.then((t=>ft(this,void 0,void 0,(function*(){this.app.dataFrame=t.df,yield this.app.setTemplate(n),this.app.campaignProps=t.campaignProps,this.app.saveCampaign(void 0,!1)})))),s.then((()=>{this.init()})),i}))}createNewTemplate(n){return ft(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0);try{const i=yield ht(n),a=new e.ViewBase,s=t.shell.v;a.name="New Template",a.root.appendChild(i.root),a.parentCall=this.app.parentCall,t.shell.addView(a),a.path=new URL(this.app.baseUrl).pathname+"/new-template";const{sub:r}=M(a,"Hit Design",g,(()=>ft(this,void 0,void 0,(function*(){t.shell.v=s,a.close()}))));i.template.then((e=>ft(this,void 0,void 0,(function*(){yield this.init(e),a.close(),H(a),t.shell.v=s,r.unsubscribe()})))),i.cancelPromise.then((()=>ft(this,void 0,void 0,(function*(){r.unsubscribe(),a.close(),t.shell.v=s}))))}finally{o.setUpdateIndicator(this.root,!1)}}))}}class gt extends tt{constructor(t){super(t),this.name="Submit"}render(){return o.empty(this.root),o.divV([o.h1("Summary"),o.div([o.tableFromMap(this.app.getSummary())])])}onActivated(){this.render()}submit(){var n,i,o,a,s;return i=this,o=void 0,s=function*(){const i=null===(n=this.app.template)||void 0===n?void 0:n.submit;if(!i)return;const o=e.Func.find({name:i.fName,package:i.package})[0];if(!o)return void t.shell.error(`Function ${i.fName} not found.`);const a=e.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield o.apply({df:a,molecules:this.app.molColName}),this.app.campaign&&(this.app.campaign.status="Submitted"),this.app.saveCampaign("Submitted"),t.shell.info("Submitted successfully.")},new((a=void 0)||(a=Promise))((function(t,e){function n(t){try{l(s.next(t))}catch(t){e(t)}}function r(t){try{l(s.throw(t))}catch(t){e(t)}}function l(e){var i;e.done?t(e.value):(i=e.value,i instanceof a?i:new a((function(t){t(i)}))).then(n,r)}l((s=s.apply(i,o||[])).next())}))}}var yt=n(143),bt={};bt.styleTagTransform=V(),bt.setAttributes=B(),bt.insert=S().bind(null,"head"),bt.domAPI=_(),bt.insertStyleElement=O(),I()(yt.Z,bt),yt.Z&&yt.Z.locals&&yt.Z.locals;class wt extends tt{constructor(t){super(t),this.v=null,this.name="Progress Tracker"}render(){return n=this,i=void 0,s=function*(){return new Promise((n=>{var i,a;o.empty(this.root),this.app.dataFrame.columns.names().forEach((t=>{t.startsWith("~")&&this.app.dataFrame.columns.remove(t)})),this.v=e.Viewer.fromType(e.VIEWER.TILE_VIEWER,this.app.dataFrame,{lanesColumnName:d,lanes:null!==(a=null===(i=this.app.template)||void 0===i?void 0:i.stages)&&void 0!==a?a:[]}),this.root.appendChild(this.v.root),this.v.root.style.height="100%",this.v.root.style.width="100%",setTimeout((()=>{var e,i,a;null===(i=null===(e=this.v)||void 0===e?void 0:e.view)||void 0===i||i._onAdded();const s=null===(a=t.shell.v)||void 0===a?void 0:a.getRibbonPanels();if(s){if(U(s))return void n();const e=o.bigButton("Design view",(()=>{const e=t.shell.view(this.app.designViewName);e&&(t.shell.v=e)})),i=o.bigButton("Submit",(()=>{var t;const e=null===(t=this.app._submitView)||void 0===t?void 0:t.render();if(e){const t=o.dialog("Submit");t.add(e),t.addButton("Save",(()=>{this.app.saveCampaign(),t.close()})),t.addButton("Submit",(()=>{var e;null===(e=this.app._submitView)||void 0===e||e.submit(),t.close()})),t.show()}}));i.classList.add("hit-design-submit-button"),s.push([e,i]),t.shell.v.setRibbonPanels(s)}n()}),5)}))},new((a=void 0)||(a=Promise))((function(t,e){function o(t){try{l(s.next(t))}catch(t){e(t)}}function r(t){try{l(s.throw(t))}catch(t){e(t)}}function l(e){var n;e.done?t(e.value):(n=e.value,n instanceof a?n:new a((function(t){t(n)}))).then(o,r)}l((s=s.apply(n,i||[])).next())}));var n,i,a,s}onActivated(){this.render()}destroy(){var t;null===(t=this.v)||void 0===t||t.detach()}}var Ct=function(t,e,n,i){return new(n||(n=Promise))((function(o,a){function s(t){try{l(i.next(t))}catch(t){a(t)}}function r(t){try{l(i.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,r)}l((i=i.apply(t,e||[])).next())}))};class At extends ot{constructor(n){super(n),this._tilesViewTab=null,this._designViewName="Design",this._filePath="System.AppData/HitTriage/Hit Design/campaigns",this._molColName=p,this.campaignProps={},this.processedValues=[],this._extraStageColsCount=0,this._infoView=new vt(this),this.multiView=new e.MultiView({viewFactories:{[this._infoView.name]:()=>this._infoView}}),this.multiView.tabs.onTabChanged.subscribe((t=>{this.multiView.currentView instanceof tt&&this.multiView.currentView.onActivated()})),this.multiView.parentCall=n,this.mainView=t.shell.addView(this.multiView),t.events.onCurrentViewChanged.subscribe((()=>Ct(this,void 0,void 0,(function*(){var e,n,i,o,s,r,l,c,u;try{if((null===(e=t.shell.v)||void 0===e?void 0:e.name)===this.currentDesignViewId||(null===(n=t.shell.v)||void 0===n?void 0:n.name)===this.currentTilesViewId){t.shell.windows.showHelp=!1,this.setBaseUrl(),R(a,null!==(s=null!==(i=this._campaignId)&&void 0!==i?i:null===(o=this._campaign)||void 0===o?void 0:o.name)&&void 0!==s?s:""),(null===(r=t.shell.v)||void 0===r?void 0:r.name)===this.currentTilesViewId?yield null===(l=this._tilesView)||void 0===l?void 0:l.render():null===(c=this._tilesView)||void 0===c||c.destroy();const{sub:e}=M(t.shell.v,"Hit Design",null===(u=t.shell.v)||void 0===u?void 0:u.name,(()=>{var n,i;t.shell.v=this.mainView,null===(n=this._tilesView)||void 0===n||n.close(),null===(i=this._designView)||void 0===i||i.close(),this._infoView.init(),e.unsubscribe()}))}}catch(t){console.error(t)}}))))}setTemplate(n,i){var o,r,l,c,u,d,m,h,f,v,g,y;return Ct(this,void 0,void 0,(function*(){if(i){const e="System.AppData/HitTriage/Hit Design/campaigns";this._filePath=null!==(l=null===(r=this.campaign)||void 0===r?void 0:r.savePath)&&void 0!==l?l:`${e}/${i}/enriched_table.csv`,this.dataFrame=yield t.dapi.files.readCsv(this._filePath),(null===(c=this._campaign)||void 0===c?void 0:c.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach((([t,e])=>{const n=this.dataFrame.columns.byName(t);n&&e&&(n.semType=e)}))}else(null===(o=this._designView)||void 0===o?void 0:o.dataFrame)&&t.shell.closeTable(this._designView.dataFrame),this._designView=void 0,i=yield this.getNewCampaignName("Hit Design/campaigns",n.key),R(s,i),this._filePath=`System.AppData/HitTriage/Hit Design/campaigns/${i}/enriched_table.csv`;if(!this.dataFrame)return void console.error("DataFrame is empty");yield this.dataFrame.meta.detectSemanticTypes(),this._molColName=null!==(d=null===(u=this.dataFrame.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===u?void 0:u.name)&&void 0!==d?d:p,this._dfName=null!==(m=(y=this.dataFrame).name)&&void 0!==m?m:y.name=i,this._campaignId=i,this.template=n,null!==(h=this._submitView)&&void 0!==h||(this._submitView=new gt(this)),t.shell.windows.showHelp=!1,this._extraStageColsCount=this.dataFrame.rowCount-this.dataFrame.filter.trueCount;const b=t.shell.addView(this.designView);this.currentDesignViewId=b.name,this.setBaseUrl(),R(a,null!==(g=null!==(f=this._campaignId)&&void 0!==f?f:null===(v=this._campaign)||void 0===v?void 0:v.name)&&void 0!==g?g:""),this.campaign&&(this.campaign.template=n)}))}get campaignId(){return this._campaignId}get designView(){return this._designView=this.getDesignView()}get designViewName(){return this._designViewName}get molColName(){var t,n,i,o;return null!==(t=this._molColName)&&void 0!==t?t:this._molColName=null!==(o=null===(i=null===(n=this.dataFrame)||void 0===n?void 0:n.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===i?void 0:i.name)&&void 0!==o?o:p}get campaign(){return this._campaign}set campaign(t){this._campaign=t}getDesignView(){var n,i,a,s,r,l;const c=[],u=null===(n=this.dataFrame.col(this.molColName))||void 0===n?void 0:n.toList().every((t=>!t&&""===t)),h=e.TableView.create(this.dataFrame,!1);this._designViewName=null!==(a=null===(i=this.campaign)||void 0===i?void 0:i.name)&&void 0!==a?a:this._designViewName,h.name=this._designViewName,this.processedValues=this.dataFrame.getCol(this.molColName).toList(),setTimeout((()=>Ct(this,void 0,void 0,(function*(){var n,i;if(h._onAdded(),yield new Promise((t=>setTimeout(t,1e3))),null===(n=this._campaign)||void 0===n?void 0:n.layout)try{const t=e.ViewLayout.fromViewState(this._campaign.layout);h.loadLayout(t)}catch(t){console.error(t)}u&&t.functions.call("Chem:editMoleculeCell",{cell:h.grid.cell(this._molColName,0)}),c.push(this.dataFrame.onRowsAdded.subscribe((()=>{var e,n;try{if(this.processedValues=this.dataFrame.getCol(this.molColName).toList(),(null===(e=this.template.stages)||void 0===e?void 0:e.length)>0)for(let t=0;t<this.dataFrame.rowCount;t++){const e=this.dataFrame.col(d).get(t);e&&""!==e&&!(null===(n=this.dataFrame.col(d))||void 0===n?void 0:n.isNone(t))||this.dataFrame.set(d,t,this.template.stages[0])}let i=null;for(let t=0;t<this.dataFrame.rowCount;t++){const e=h.grid.cell(this.molColName,t);e&&(""!==e.cell.value&&null!==e.cell.value||(i=e))}i&&t.functions.call("Chem:editMoleculeCell",{cell:i})}catch(t){console.error(t)}}))),this.dataFrame&&c.push(null===(i=this.dataFrame)||void 0===i?void 0:i.onRowsRemoved.subscribe((()=>{try{this.processedValues=this.dataFrame.getCol(this.molColName).toList()}catch(t){console.error(t)}}))),c.push(t.events.onContextMenu.subscribe((n=>{var i,o,a,s,r;try{const t=null===(i=null==n?void 0:n.args)||void 0===i?void 0:i.context;if(!t)return;if((null==t?void 0:t.type)!==e.VIEWER.GRID)return;if(!t.tableView||t.tableView.id!==h.id)return;if((null===(s=null===(a=null===(o=null==n?void 0:n.args)||void 0===o?void 0:o.item)||void 0===a?void 0:a.tableColumn)||void 0===s?void 0:s.name)!==this.molColName)return;const l=null===(r=null==n?void 0:n.args)||void 0===r?void 0:r.menu;if(!l)return;l.item("Add new row",(()=>{this.dataFrame.rows.addNew(null,!0)})),l.item("Duplicate molecule",(()=>{var t,e,i,o;try{this.dataFrame.rows.addNew(null,!0);let a=null;for(let t=0;t<this.dataFrame.rowCount;t++){const e=h.grid.cell(this.molColName,t);e&&(""!==e.cell.value&&null!==e.cell.value||(a=e))}a&&(a.cell.value=null!==(o=null===(i=null===(e=null===(t=null==n?void 0:n.args)||void 0===t?void 0:t.item)||void 0===e?void 0:e.cell)||void 0===i?void 0:i.value)&&void 0!==o?o:"")}catch(t){console.error(t)}}))}catch(e){t.log.error(e)}}))),c.push(h.grid.onCellValueEdited.subscribe((t=>Ct(this,void 0,void 0,(function*(){var e,n,i,o;try{if((null===(e=t.tableColumn)||void 0===e?void 0:e.name)===d)return void(yield this.saveCampaign(void 0,!1));if((null===(n=t.tableColumn)||void 0===n?void 0:n.name)!==this.molColName)return;const a=t.cell.value,s=t.tableRowIndex;(null===(i=this.dataFrame.col(m))||void 0===i?void 0:i.get(s))&&""!==(null===(o=this.dataFrame.col(m))||void 0===o?void 0:o.get(s))||this.dataFrame.col(m).set(s,pt(this.dataFrame.col(m)),!1);const r=this.template.compute;if(!a||""===a)return;const l=yield dt(a,r.descriptors.args,r.functions,r.scripts);for(const t of l.columns.toList())t.name!==p&&(this.dataFrame.columns.contains(t.name)||(this.dataFrame.columns.addNew(t.name,t.type).semType=t.semType),this.dataFrame.col(t.name).set(s,t.get(0),!1));this.dataFrame.fireValuesChanged(),this.saveCampaign(void 0,!1)}catch(t){console.error(t)}})))));const o=t.events.onViewRemoved.subscribe((t=>{t.id===h.id&&(c.forEach((t=>t.unsubscribe())),o.unsubscribe())}))}))),300);const v=null==h?void 0:h.getRibbonPanels();if(v&&!U(v)){const e=()=>Ct(this,void 0,void 0,(function*(){var t;G((t=>Ct(this,void 0,void 0,(function*(){var e,n,i,a,s;const r=this.template.compute.descriptors.args,l=this.template.compute.functions,c=null!==(e=this.template.compute.scripts)&&void 0!==e?e:[],u=t.descriptors,d={descriptors:{enabled:!!(null===(n=null==t?void 0:t.descriptors)||void 0===n?void 0:n.length),args:null!==(i=null==t?void 0:t.descriptors)&&void 0!==i?i:[]},functions:Object.entries(null!==(a=null==t?void 0:t.externals)&&void 0!==a?a:{}).map((([t,e])=>{const n=t.split(":");return{name:n[1],package:n[0],args:e}})),scripts:Object.entries(null!==(s=null==t?void 0:t.scripts)&&void 0!==s?s:{}).filter((([t,e])=>t.startsWith(f)&&3===t.split(":").length)).map((([t,e])=>{var n,i;const o=t.split(":");return{name:null!==(n=o[1])&&void 0!==n?n:"",id:null!==(i=o[2])&&void 0!==i?i:"",args:e}}))};this.template.compute=d,this.campaign.template=this.template;const m=u.filter((t=>!r.includes(t))),v=d.functions.filter((t=>{if(!l.some((e=>e.name===t.name&&e.package===t.package)))return!0;const e=l.find((e=>e.name===t.name&&e.package===t.package));return!Object.entries(t.args).every((([t,n])=>e.args[t]===n))})),g=d.scripts.filter((t=>{if(!c.some((e=>e.id===t.id)))return!0;const e=c.find((e=>e.id===t.id));return!Object.entries(t.args).every((([t,n])=>e.args[t]===n))}));o.setUpdateIndicator(h.grid.root,!0);try{for(let t=0;t<this.dataFrame.rowCount;t++){const e=this.dataFrame.get(this.molColName,t);if(!e||""===e)continue;const n=yield dt(e,m,v,g);for(const e of n.columns.toList())e.name!==p&&(this.dataFrame.columns.contains(e.name)||(this.dataFrame.columns.addNew(e.name,e.type).semType=e.semType),this.dataFrame.col(e.name).set(t,e.get(0),!1));this.dataFrame.fireValuesChanged()}}finally{o.setUpdateIndicator(h.grid.root,!1),this.saveCampaign(void 0,!1)}}))),(()=>null),null===(t=this.campaign)||void 0===t?void 0:t.template,!0)})),n=o.iconFA("wrench",e,"Calculate additional properties"),i=o.icons.add((()=>{var t;null===(t=this.dataFrame)||void 0===t||t.rows.addNew(null,!0)}),"Add new row"),a=o.bigButton("Progress tracker",(()=>{this.currentTilesViewId&&t.shell.view(this.currentTilesViewId)?t.shell.v=t.shell.view(this.currentTilesViewId):(this._tilesView=new wt(this),this._tilesView.parentCall=this.parentCall,this._tilesViewTab=t.shell.addView(this._tilesView),this.currentTilesViewId=this._tilesViewTab.name,this._tilesView.onActivated())})),c=o.bigButton("Submit",(()=>{var t;const e=null===(t=this._submitView)||void 0===t?void 0:t.render();if(e){const t=o.dialog("Submit");t.add(e),t.addButton("Save",(()=>{this.saveCampaign(),t.close()})),t.addButton("Submit",(()=>{var e;null===(e=this._submitView)||void 0===e||e.submit(),t.close()})),t.show()}}));c.classList.add("hit-design-submit-button");const u=[c];null!==(l=null===(r=null===(s=this.template)||void 0===s?void 0:s.stages)||void 0===r?void 0:r.length)&&void 0!==l&&l&&u.unshift(a),this.campaign&&this.template&&(this.campaign.template||(this.campaign.template=this.template),u.unshift(n)),u.unshift(i),v.push(u),h.setRibbonPanels(v)}return h.parentCall=this.parentCall,h}getSummary(){var n,i,a,s;const r=()=>{var t,e;const n=this._filePath.indexOf(null!==(t=this.campaignId)&&void 0!==t?t:null===(e=this._campaign)||void 0===e?void 0:e.name);return-1===n?this._filePath:this._filePath.substring(0,n-1)},l=Object.assign({},null!==(i=null===(n=this.campaign)||void 0===n?void 0:n.campaignFields)&&void 0!==i?i:this.campaignProps);return this.template&&this.template.campaignFields&&Object.entries(l).forEach((([n,i])=>{const o=this.template.campaignFields.find((t=>t.name===n));o&&"Date"===o.type&&i?"Invalid Date"!==new Date(i).toString()?l[n]=new Date(i).toLocaleDateString():i.date?l[n]=new Date(i.date).toLocaleDateString():l[n]=i:o&&o.type===e.SEMTYPE.MOLECULE&&i&&(l[n]=t.chem.drawMolecule(i))})),Object.assign(Object.assign({Template:null!==(s=null===(a=this.template)||void 0===a?void 0:a.name)&&void 0!==s?s:"Molecules","File path":(()=>{const e=o.icons.edit((()=>{const n=r(),s=o.stringInput("Path",n),l=s.root.getElementsByTagName("label").item(0);l&&l.remove(),s.root.style.width="100%";const c=o.button("Save",(()=>Ct(this,void 0,void 0,(function*(){const n=yield function(){return Ct(this,void 0,void 0,(function*(){const e=s.value;return e&&""!==e.trim()?!!(yield t.dapi.files.exists(e))||(t.shell.error("Given folder does not exist"),!1):(t.shell.error("Path can not be empty"),!1)}))}();if(!n)return;const l=s.value;l.endsWith("/")?this._filePath=`${l}${this.campaignId}/enriched_table.csv`:this._filePath=`${l}/${this.campaignId}/enriched_table.csv`,this._campaign&&(this._campaign.savePath=this._filePath),yield this.saveCampaign(void 0,!0),o.empty(a);const c=r();i=o.link(c,(()=>{var t,e,n;return this.download(this.dataFrame,null!==(n=null!==(t=this.campaignId)&&void 0!==t?t:null===(e=this._campaign)||void 0===e?void 0:e.name)&&void 0!==n?n:"Molecules")}),w),a.appendChild(i),a.appendChild(e)})))),u=o.button("Cancel",(()=>{o.empty(a),a.appendChild(i),a.appendChild(e)}));o.empty(a),s.addOptions(u),s.addOptions(c),a.appendChild(s.root)}),"Edit file path");e.style.marginLeft="5px";const n=r();let i=o.link(n,(()=>{var t,e,n;return this.download(this.dataFrame,null!==(n=null!==(t=this.campaignId)&&void 0!==t?t:null===(e=this._campaign)||void 0===e?void 0:e.name)&&void 0!==n?n:"Molecules")}),w);const a=o.divH([i,e],{style:{alignItems:"center"}});return a})()},l),{"Number of molecules":(this.dataFrame.rowCount-this._extraStageColsCount).toString(),"Enrichment methods":[this.template.compute.descriptors.enabled?"descriptors":"",...this.template.compute.functions.map((t=>t.name))].filter((t=>t&&""!==t.trim())).join(", ")})}saveCampaign(n,i=!0){var o,a,s,r,l,c,u,d;return Ct(this,void 0,void 0,(function*(){const p=this.campaignId,h=this.template.name,f=this.dataFrame,v=p,g={};f.columns.toList().forEach((t=>g[t.name]=t.semType));const y={name:v,templateName:h,status:null!==(a=null!=n?n:null===(o=this.campaign)||void 0===o?void 0:o.status)&&void 0!==a?a:"In Progress",createDate:null!==(r=null===(s=this.campaign)||void 0===s?void 0:s.createDate)&&void 0!==r?r:j(new Date),campaignFields:null!==(c=null===(l=this.campaign)||void 0===l?void 0:l.campaignFields)&&void 0!==c?c:this.campaignProps,columnSemTypes:g,rowCount:null!==(d=null===(u=f.col(m))||void 0===u?void 0:u.toList().filter((t=>"StageDefiningRow"!==t)).length)&&void 0!==d?d:0,filteredRowCount:f.filter.trueCount,savePath:this._filePath};console.log(this._filePath);const b=e.DataFrame.fromColumns(f.columns.toList().filter((t=>!t.name.startsWith("~")))).toCsv();yield t.dapi.files.writeAsText(this._filePath,b);const w=this._designView.saveLayout();return w?y.layout=w.viewState:t.shell.warning("Layout cound not be saved"),y.template=this.template,yield It.files.writeAsText(`Hit Design/campaigns/${p}/campaign.json`,JSON.stringify(y)),i&&t.shell.info("Campaign saved successfully."),this.campaign=y,y}))}}class Tt extends e.GridCellRenderer{get name(){return"customGasteigerPNG"}get cellType(){return"customGasteigerPNG"}get defaultHeight(){return 200}get defaultWidth(){return 200}render(t,e,n,i,o,a,s){if(a.gridRow<0||!a.cell.value)return;const r=a.cell.value,l=new Image(i-2,o-2);l.src="data:image/png;base64,"+r,l.onload=function(){t.drawImage(l,e+2,n+2,i-2,o-2)}}}var xt=function(t,e,n,i){return new(n||(n=Promise))((function(o,a){function s(t){try{l(i.next(t))}catch(t){a(t)}}function r(t){try{l(i.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,r)}l((i=i.apply(t,e||[])).next())}))};const It=new e.Package;function Nt(){return xt(this,void 0,void 0,(function*(){const e=t.functions.getCurrentCall();new rt(e)}))}function _t(){return xt(this,void 0,void 0,(function*(){const e=t.functions.getCurrentCall();new At(e)}))}function Et(){return xt(this,void 0,void 0,(function*(){const e=t.data.demo.molecules(100);return e.name="100 Molecules",e}))}function St(){return xt(this,void 0,void 0,(function*(){const e=t.data.demo.molecules(5e3);return e.name="5000 Molecules",e}))}function Ft(e){return xt(this,void 0,void 0,(function*(){const n=t.data.demo.molecules(e);return n.name="Variable Molecules number",n}))}function Bt(e,n){return xt(this,void 0,void 0,(function*(){t.shell.info(e.rowCount),t.shell.info(n)}))}function Pt(){return new Tt}})(),hittriage=i})();
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