@datagrok/hit-triage 1.1.15 → 1.2.0

package/CHANGELOG.md

@@ -1,5 +1,13 @@
 # HitTriage changelog
 
+## 1.2.0 (2024-07-30)
+
+Permission management and sharing of campaigns. Deleting templates. optimization of function loading
+
+## 1.1.16 (2024-07-29)
+
+Fix re-running calculations on the first index.
+
 ## 1.1.15 (2024-07-29)
 
 Fixed duplicate detection on fingerprints. added rerunning calculations

package/dist/package.js

@@ -1,2 +1,2 @@
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o(e){try{l(r.throw(e))}catch(e){t(e)}}function l(t){var n;t.done?e(t.value):(n=t.value,n instanceof s?n:new s((function(e){e(n)}))).then(i,o)}l((r=r.apply(n,a||[])).next())}));var n,a,s,r}}(n=t.tools||(t.tools={}))}(he||(he={}));var me=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};class ve extends ue{constructor(t){super(t),this.readmePath=De.webRoot+"README_HT.md",this.dataSourceFunctionsMap={},this.name="Hit Triage",e.shell.windows.showHelp=!0,e.shell.windows.help.showHelp(this.readmePath),this.checkCampaign().then((e=>{this.app.campaign=e,this.init()}))}onActivated(){e.shell.windows.showHelp=!0,e.shell.windows.help.showHelp(this.readmePath)}init(e){return me(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0);try{const t=o.h1(N),i=o.h1(I,{style:{marginLeft:"10px"}}),n=he.appHeader({iconPath:De.webRoot+"/images/icons/hit-triage-icon.png",learnMoreUrl:"https://github.com/datagrok-ai/public/blob/master/packages/HitTriage/README_HT.md",description:"- Configure your own workflow using the template editor.\n- Calculate different molecular properties.\n- Filter molecules using different criteria.\n- Submit processed dataframe to the function of your choice.\n- Save campaigns and continue any time from where you left off.\n "}),a=o.div(),s=o.div([],{classes:"ui-form"}),r=yield this.getCampaignsTable();yield this.startNewCampaign(a,s,e),X()(this.root).empty(),this.root.appendChild(o.div([o.divV([n,t],{style:{marginLeft:"10px"}}),r,i,s,a])),this.app.resetBaseUrl()}catch(e){throw o.setUpdateIndicator(this.root,!1),e}finally{o.setUpdateIndicator(this.root,!1)}}))}startNewCampaign(e,t,i){return me(this,void 0,void 0,(function*(){var n;const a=(yield De.files.list("Hit Triage/templates")).map((e=>e.name.slice(0,-5)));i&&!a.includes(i.name)&&a.push(i.name);const s=()=>me(this,void 0,void 0,(function*(){const t=r.value,n=i&&i.name===t?i:JSON.parse(yield De.files.readAsText("Hit Triage/templates/"+t+".json")),o=yield this.getNewCampaignAccordeon(n,e);X()(e).empty(),e.className="ui-form",e.appendChild(o)})),r=o.input.choice("Template",{value:null!==(n=null==i?void 0:i.name)&&void 0!==n?n:a[0],items:a,onValueChanged:()=>me(this,void 0,void 0,(function*(){yield s()}))}),l=o.icons.add((()=>me(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0),yield this.createNewTemplate(),o.setUpdateIndicator(this.root,!1)}))),C);r.addOptions(l),yield s(),X()(t).empty(),t.appendChild(r.root)}))}checkCampaign(e){return me(this,void 0,void 0,(function*(){const t=location.search,i=new URLSearchParams(t);if(!i.has(a)&&!e)return;const n=null!=e?e:i.get(a);if(!(yield De.files.exists(`Hit Triage/campaigns/${n}/${l}`)))return;const o=JSON.parse(yield De.files.readAsText(`Hit Triage/campaigns/${n}/${l}`)),s=JSON.parse(yield De.files.readAsText(`Hit Triage/templates/${o.templateName}.json`));return this.app.setTemplate(s,o.filters,n,o.ingest),e&&q(a,e),o}))}getCampaignsTable(){return me(this,void 0,void 0,(function*(){const e=yield z("Hit Triage",this.deletedCampaigns),t=Object.values(e).map((e=>({name:e.name,createDate:e.createDate,rowCount:e.rowCount,filtered:e.filteredRowCount,status:e.status}))),i=o.table(t,(e=>[o.link(e.name,(()=>this.setCampaign(e.name)),"",""),e.createDate,e.rowCount,e.filtered,e.status,o.icons.delete((()=>me(this,void 0,void 0,(function*(){o.dialog("Delete campaign").add(o.divText(`Are you sure you want to delete campaign ${e.name}?`)).onOK((()=>me(this,void 0,void 0,(function*(){yield this.deleteCampaign("Hit Triage",e.name),this.deletedCampaigns.push(e.name),yield this.init()})))).show()}))),"Delete campaign")]),["Name","Created","Total","Selected","Status",""]);return i.style.color="var(--grey-5)",i}))}setCampaign(e){return me(this,void 0,void 0,(function*(){const t=yield this.checkCampaign(e);this.app.campaign=t}))}getNewCampaignAccordeon(i,n){return me(this,void 0,void 0,(function*(){o.setUpdateIndicator(n,!0);const{root:a,promise:s,cancelPromise:r}=yield function(i,n){return K(this,void 0,void 0,(function*(){var a,s;const r=o.divText("",{style:{color:"red"}});let l=null;const c=()=>K(this,void 0,void 0,(function*(){try{if(l=d.value,!l)return;if(yield l.meta.detectSemanticTypes(),!l.columns.bySemType(t.SEMTYPE.MOLECULE))return void(r.innerText="No molecules column found");r.innerText=""}catch(e){r.innerText="Error parsing file"}})),d=o.input.table("Dataframe",{onValueChanged:c});yield c();const p=o.div([d,r]);0===Object.keys(n).length&&(t.Func.find({tags:[u]}).forEach((e=>{var t;n[null!==(t=e.friendlyName)&&void 0!==t?t:e.name]=e})),(yield e.dapi.queries.include("params,connection").filter(`#${u}`).list()).forEach((e=>{var t;n[null!==(t=e.friendlyName)&&void 0!==t?t:e.name]=e})));let h=null;const m=()=>K(this,void 0,void 0,(function*(){const e=n[f.value];h=e.prepare();const t=yield h.getEditor();t.classList.remove("ui-form"),v.innerHTML="",v.appendChild(t)})),v=o.div([]),f=o.input.choice(b,{value:null!==(a=i.queryFunctionName)&&void 0!==a?a:Object.keys(n)[0],items:Object.keys(n),onValueChanged:m});yield m(),i.queryFunctionName&&(null===(s=f.root.getElementsByTagName("select").item(0))||void 0===s||s.setAttribute("disabled","true"));const g=o.div([f,v]);g.style.display="none";const y=o.div([p,g]),w=i.campaignFields.map((e=>e.type===t.SEMTYPE.MOLECULE?Object.assign(Object.assign({},e),{type:"String",semtype:t.SEMTYPE.MOLECULE}):e)).map((e=>t.Property.fromOptions(Object.assign({name:e.name,type:Q[e.type],nullable:!e.required},e.semtype?{semType:e.semtype}:{})))),C={},T=w.length?o.input.form(C,w):o.div();T.classList.remove("ui-form"),"File"===i.dataSourceType?(p.style.display="inherit",g.style.display="none"):(p.style.display="none",g.style.display="inherit");const x=o.div([y,...w.length?[T]:[]]),N=o.buttonsInput([]);return x.appendChild(N),{promise:new Promise((t=>{const a=()=>K(this,void 0,void 0,(function*(){if("File"===i.dataSourceType){if(!l)return void e.shell.error("No file selected");const i=l;i.name=l.name,t({df:i,type:"File",campaignProps:C})}else{const i=n[f.value];if(!i)return void e.shell.error("No function selected");const o={};Object.entries(h.inputs).forEach((([e,t])=>{o[e]=t}));const a=yield i.apply(o);t({df:a,type:"Query",campaignProps:C})}})),s=o.bigButton(A,(()=>a()));N.appendChild(s)})),root:x,cancelPromise:new Promise((e=>{o.button(S,(()=>e()))}))}}))}(i,this.dataSourceFunctionsMap);return o.setUpdateIndicator(n,!1),s.then((e=>me(this,void 0,void 0,(function*(){this.app.dataFrame=e.df,this.app._fileInputType=e.type,yield this.app.setTemplate(i),this.app.campaignProps=e.campaignProps,yield this.app.saveCampaign(void 0,!1),i.layoutViewState&&this.app.campaign&&(this.app.campaign.layout=i.layoutViewState)})))),r.then((()=>{this.init()})),a}))}createNewTemplate(){return me(this,void 0,void 0,(function*(){const i=yield re(this.app,this.dataSourceFunctionsMap),n=new t.ViewBase,o=e.shell.v;n.name="New Template",n.root.appendChild(i.root),n.parentCall=this.app.parentCall,e.shell.addView(n),n.path=new URL(this.app.baseUrl).pathname+"/new-template",n.parentView=o;const{sub:a}=Y(e.shell.v,"Hit Triage",C,(()=>{e.shell.v=o,n.close()}));i.template.then((t=>me(this,void 0,void 0,(function*(){yield this.init(t),n.close(),W(n),e.shell.v=o,a.unsubscribe()})))),i.cancelPromise.then((()=>{a.unsubscribe(),n.close(),e.shell.v=o}))}))}}class fe extends ue{constructor(e){super(e),this.name="Submit"}render(){return o.empty(this.root),o.divV([o.h1("Summary"),o.div([o.tableFromMap(this.app.getSummary())])])}onActivated(){this.render()}submit(){return i=this,n=void 0,a=function*(){var i;const n=null===(i=this.app.template)||void 0===i?void 0:i.submit;if(!n)return;const o=t.Func.find({name:n.fName,package:n.package})[0];if(!o)return void e.shell.error(`Function ${n.fName} not found.`);const a=t.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield o.apply({df:a,molecules:this.app.molColName}),this.app.campaign&&(this.app.campaign.status="Submitted"),this.app.saveCampaign("Submitted"),e.shell.info("Submitted successfully.")},new((o=void 0)||(o=Promise))((function(e,t){function s(e){try{l(a.next(e))}catch(e){t(e)}}function r(e){try{l(a.throw(e))}catch(e){t(e)}}function l(t){var i;t.done?e(t.value):(i=t.value,i instanceof o?i:new o((function(e){e(i)}))).then(s,r)}l((a=a.apply(i,n||[])).next())}));var i,n,o,a}}var ge=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};class ye{constructor(i){this.parentCall=i,this.isJoining=!1,this.resetBaseUrl(),this.computeFunctions=new Promise((i=>ge(this,void 0,void 0,(function*(){const n=t.Func.find({tags:[c]}).filter((e=>"function-package"===e.type)),o=yield e.dapi.scripts.include("params").filter(`#${c}`).list(),a=yield e.dapi.queries.include("params,connection").filter(`#${c}`).list();i({functions:n,scripts:o,queries:a})}))))}resetBaseUrl(){const e=window.location.href,t=new URL(e);this.baseUrl=t.origin+t.pathname}getFilterType(e){const i=this.dataFrame.col(e);return(null==i?void 0:i.semType)===t.SEMTYPE.MOLECULE?t.FILTER_TYPE.SUBSTRUCTURE:(null==i?void 0:i.type)===t.COLUMN_TYPE.BOOL?t.FILTER_TYPE.BOOL_COLUMNS:(null==i?void 0:i.type)===t.COLUMN_TYPE.STRING?t.FILTER_TYPE.CATEGORICAL:t.FILTER_TYPE.HISTOGRAM}download(e,i,n=!1){const o=document.createElement("a"),a=t.DataFrame.fromColumns(e.columns.toList().filter((e=>!e.name.startsWith("~")))).toCsv({filteredRowsOnly:n});o.setAttribute("href","data:text/plain;charset=utf-8,"+encodeURIComponent(a)),o.setAttribute("download",i+".csv"),o.click()}getNewCampaignName(e,t){return ge(this,void 0,void 0,(function*(){const i=(yield De.files.list(e)).map((e=>e.name)).filter((e=>e.startsWith(t)));if(0===i.length)return t+"-1";const n=i.map((e=>e.split("-")[1])).filter(Boolean).map((e=>parseInt(e,10))).sort();return t+"-"+(n[n.length-1]+1).toString()}))}setBaseUrl(){const e=document.title;if(history.replaceState){const t={Title:e,Url:this.baseUrl};history.replaceState(t,t.Title,t.Url)}}unionDataframes(e,i,n){var o,a,s,r,l;const c=null===(a=null===(o=e.col(n))||void 0===o?void 0:o.toList())||void 0===a?void 0:a.filter((e=>!!e)).map((e=>t.chem.convert(e,t.chem.Notation.Unknown,t.chem.Notation.Smiles))),u=null===(r=null===(s=i.col(n))||void 0===s?void 0:s.toList())||void 0===r?void 0:r.filter((e=>!!e)).map((e=>t.chem.convert(e,t.chem.Notation.Unknown,t.chem.Notation.Smiles)));if(!c||!u)throw new Error("Molecule column not found");this.isJoining=!0;try{for(const t of e.columns)i.columns.contains(t.name)||i.columns.addNew(t.name,t.type);for(let t=0;t<c.length;t++)if(!u.includes(c[t])){i.rows.addNew(null,!0);for(const n of e.columns){const e=n.get(t);null===(l=i.col(n.name))||void 0===l||l.set(i.rowCount-1,e,!1)}}}finally{setTimeout((()=>{this.isJoining=!1}),500)}return i}}var we=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))},be=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};function Ce(e){let t=0;if(e.length>1)for(const i of e.toList()){if(!i||!i.startsWith(f[0])||7!==i.length)continue;const e=parseInt(i.substring(1));isNaN(e)||(t=Math.max(e,t))}return`V${"".concat(...new Array(6-(t+1).toString().length).fill("0"))}${t+1}`}function Ae(i,n,o){return be(this,void 0,void 0,(function*(){var a,s;const r=t.TaskBarProgressIndicator.create("Calculating ..."),l=n.col(o);if(!l)throw new Error("There is no molecule column in dataframe");for(let t=0;t<l.length;t++){if(l.isNone(t))continue;const i=l.get(t);if(!i)continue;const n=e.chem.convert(i,e.chem.Notation.Unknown,e.chem.Notation.Smiles);l.set(t,n,!1)}try{i.descriptors&&i.descriptors.length>0&&(yield e.chem.descriptors(n,o,i.descriptors))}catch(e){console.error("Descriptors calculation error",e)}for(const e of Object.keys(i.externals))try{const a=i.externals[e],s=t.Func.find({package:e.split(":")[0],name:e.split(":")[1]})[0],r=s.inputs[0].name,l=s.inputs[1].name;a&&(yield s.apply(Object.assign(Object.assign({},a),{[r]:n,[l]:o})))}catch(e){console.error(e)}for(const t of Object.keys(null!==(a=i.scripts)&&void 0!==a?a:{})){const a=i.scripts[t];if(a){const i=t.split(":")[2];if(!i)continue;try{const t=yield e.dapi.scripts.find(i);if(!t)continue;const s=t.inputs[0].name,r=t.inputs[1].name,l=yield t.apply(Object.assign(Object.assign({},a),{[s]:n,[r]:o}));if(l&&l.rowCount===n.rowCount&&"python"===t.language)for(const e of l.columns)e.name=n.columns.getUnusedName(e.name),n.columns.add(e)}catch(e){console.error(e)}}}for(const t of Object.keys(null!==(s=i.queries)&&void 0!==s?s:{})){const a=i.queries[t];if(a){const i=t.split(":")[2];if(!i)continue;try{const t=yield e.dapi.queries.find(i);if(!t)continue;const s=t.inputs[0].name,r=n.col(o).toList(),l=yield t.apply(Object.assign(Object.assign({},a),{[s]:r}));l&&(yield G(n,o,l))}catch(e){console.error(e)}}}r.close()}))}var Te=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};class xe extends ye{get infoView(){return this._infoView}constructor(i){super(i),this._filterViewName="Hit triage | Pick",this._filterDescriptions=[],this.campaignProps={},this._pickViewPromise=null,this._infoView=new ve(this),this.multiView=new t.MultiView({viewFactories:{[this._infoView.name]:()=>this._infoView}}),this.multiView.tabs.onTabChanged.subscribe((e=>{this.multiView.currentView instanceof ue&&this.multiView.currentView.onActivated()})),this.multiView.parentCall=i,e.events.onCurrentViewChanged.subscribe((()=>{var t,i,n,o;try{(null===(t=e.shell.v)||void 0===t?void 0:t.name)===this.currentPickViewId&&(e.shell.windows.showHelp=!1,this.setBaseUrl(),q(a,null!==(o=null!==(i=this._campaignId)&&void 0!==i?i:null===(n=this._campaign)||void 0===n?void 0:n.name)&&void 0!==o?o:""))}catch(e){console.error(e)}}))}setTemplate(i,n,o,s){return Te(this,void 0,void 0,(function*(){var r,l,c,u,d,p,h,m,v,f,w,b,C,A,T;if((null===(r=this._pickView)||void 0===r?void 0:r.dataFrame)&&e.shell.closeTable(null===(l=this._pickView)||void 0===l?void 0:l.dataFrame),this._pickView=void 0,o?s&&(this._fileInputType=s.type,"File"===s.type?this.dataFrame=yield e.dapi.files.readCsv(s.query):this.dataFrame=yield e.functions.call(s.query)):(o=yield this.getNewCampaignName("Hit Triage/campaigns",i.key),q(a,o)),!this.dataFrame)return void console.error("Dataframe is empty.");if((null===(c=this._campaign)||void 0===c?void 0:c.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach((([e,t])=>{const i=this.dataFrame.columns.byName(e);i&&i.semType!==t&&(i.semType=t)})),(null===(u=this._campaign)||void 0===u?void 0:u.columnTypes)&&Object.entries(this._campaign.columnTypes).forEach((([e,t])=>{const i=this.dataFrame.columns.byName(e);if(i&&i.type!==t)try{i.convertTo(t)}catch(e){console.error(e)}})),yield this.dataFrame.meta.detectSemanticTypes(),this._molColName=null!==(p=null===(d=this.dataFrame.columns.bySemType(t.SEMTYPE.MOLECULE))||void 0===d?void 0:d.name)&&void 0!==p?p:void 0,this._dfName=null!==(h=this.dataFrame.name)&&void 0!==h?h:null==s?void 0:s.query,this.dataFrame.name=null!==(v=null!==(m=this._dfName)&&void 0!==m?m:this.dataFrame.name)&&void 0!==v?v:"Molecules",this._campaignId=o,this.template=(null===(f=this.campaign)||void 0===f?void 0:f.template)?Object.assign(Object.assign({},this.campaign.template),{dataSourceType:i.dataSourceType,queryFunctionName:i.queryFunctionName}):i,this._campaignFilters=n,!n){const e={},t={},n={};i.compute.functions.forEach((t=>{const i=`${t.package}:${t.name}`;e[i]=t.args})),null===(w=i.compute.scripts)||void 0===w||w.forEach((e=>{const i=`${g}:${e.name}:${e.id}`;t[i]=e.args})),null===(b=i.compute.queries)||void 0===b||b.forEach((e=>{const t=`${y}:${e.name}:${e.id}`;n[t]=e.args})),yield Ae({descriptors:i.compute.descriptors.enabled?i.compute.descriptors.args:[],externals:e,scripts:t,queries:n},this.dataFrame,this._molColName)}const x=e.shell.v,S=e.shell.addView(this.pickView);this.currentPickViewId=S.name,this._submitView=new fe(this),this.setBaseUrl(),q(a,null!==(T=null!==(C=this._campaignId)&&void 0!==C?C:null===(A=this._campaign)||void 0===A?void 0:A.name)&&void 0!==T?T:"");const N=S;setTimeout((()=>{this._pickViewPromise&&this._pickViewPromise.then((()=>{const{sub:t}=Y(N,"Hit Triage","Pick",(()=>{e.shell.v=x,N.close(),t.unsubscribe()}))}))}),300),e.shell.windows.showHelp=!1}))}get filterSettings(){return this._campaignFilters}get campaignId(){return this._campaignId}get pickView(){return this._pickView=this.getFilterView()}get molColName(){var e,i,n;return null!==(e=this._molColName)&&void 0!==e?e:this._molColName=null===(n=null===(i=this.dataFrame)||void 0===i?void 0:i.columns.bySemType(t.SEMTYPE.MOLECULE))||void 0===n?void 0:n.name}get fileInputType(){return this._fileInputType}get campaign(){return this._campaign}set campaign(e){this._campaign=e}getFilterView(){let e=null;this._pickViewPromise=new Promise((t=>{e=t})),this.dataFrame.col(p)||this.dataFrame.columns.addNewBool(p).init(!1);const i=t.TableView.create(this.dataFrame,!1),n=i.getRibbonPanels(),a=o.iconFA("wrench",(()=>Te(this,void 0,void 0,(function*(){te(this,(e=>Te(this,void 0,void 0,(function*(){var t,i,n,o,a,s,r;const l=this.template.compute.descriptors.args,c=this.template.compute.functions,u=null!==(t=this.template.compute.scripts)&&void 0!==t?t:[],d=null!==(i=this.template.compute.queries)&&void 0!==i?i:[],p=e.descriptors,h={descriptors:{enabled:!!(null===(n=null==e?void 0:e.descriptors)||void 0===n?void 0:n.length),args:null!==(o=null==e?void 0:e.descriptors)&&void 0!==o?o:[]},functions:Object.entries(null!==(a=null==e?void 0:e.externals)&&void 0!==a?a:{}).map((([e,t])=>{const i=e.split(":");return{name:i[1],package:i[0],args:t}})),scripts:Object.entries(null!==(s=null==e?void 0:e.scripts)&&void 0!==s?s:{}).filter((([e,t])=>e.startsWith(g)&&3===e.split(":").length)).map((([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}})),queries:Object.entries(null!==(r=null==e?void 0:e.queries)&&void 0!==r?r:{}).filter((([e,t])=>e.startsWith(y)&&3===e.split(":").length)).map((([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}}))};this.template.compute=h;const m=p.filter((e=>!l.includes(e))),v=h.functions.filter((e=>{if(!c.some((t=>t.name===e.name&&t.package===e.package)))return!0;const t=c.find((t=>t.name===e.name&&t.package===e.package));return!Object.entries(e.args).every((([e,i])=>t.args[e]===i))})),f=h.scripts.filter((e=>{if(!u.some((t=>t.id===e.id)))return!0;const t=u.find((t=>t.id===e.id));return!Object.entries(e.args).every((([e,i])=>t.args[e]===i))})),w=h.queries.filter((e=>{if(!d.some((t=>t.id===e.id)))return!0;const t=d.find((t=>t.id===e.id));return!Object.entries(e.args).every((([e,i])=>t.args[e]===i))})),b={};v.forEach((e=>{const t=`${e.package}:${e.name}`;b[t]=e.args}));const C={};f.forEach((e=>{const t=`${g}:${e.name}:${e.id}`;C[t]=e.args}));const A={};w.forEach((e=>{const t=`${y}:${e.name}:${e.id}`;A[t]=e.args})),yield Ae({descriptors:m,externals:b,scripts:C,queries:A},this.dataFrame,this._molColName),this.saveCampaign("In Progress",!1)}))),(()=>null),this.template,!0)}))),"Calculate additional properties"),s=o.bigButton("Submit",(()=>{var e;const t=null===(e=this._submitView)||void 0===e?void 0:e.render();if(t){const e=o.dialog("Submit");e.add(t),e.addButton("Save",(()=>{this.saveCampaign(),e.close()})),e.addButton("Submit",(()=>{var t;null===(t=this._submitView)||void 0===t||t.submit(),e.close()})),e.show()}}));s.classList.add("hit-design-submit-button");const r=J(n);return n.push([a,...r?[]:[s]]),i.setRibbonPanels(n),i.name=this._filterViewName,setTimeout((()=>Te(this,void 0,void 0,(function*(){var n,o,a;i._onAdded(),yield new Promise((e=>setTimeout(e,1e3)));const s=i.filters(this._campaignFilters?{filters:this._campaignFilters}:void 0),r=null!==(o=null===(n=this._campaign)||void 0===n?void 0:n.layout)&&void 0!==o?o:null===(a=this.template)||void 0===a?void 0:a.layoutViewState;if(r)try{const e=t.ViewLayout.fromViewState(r);i.loadLayout(e)}catch(e){console.error(e)}i.dataFrame.onFilterChanged.subscribe((e=>{this._filterDescriptions=Array.from(i.dataFrame.rows.filters),this._campaignFilters=s.getOptions().look.filters})),setTimeout((()=>{this._filterDescriptions=Array.from(i.dataFrame.rows.filters),this._campaignFilters=s.getOptions().look.filters}),300),e&&e()}))),300),i.parentCall=this.parentCall,i}getSummary(){var e,t,i,n,a,s,r;const l=null!==(t=null===(e=this.campaign)||void 0===e?void 0:e.campaignFields)&&void 0!==t?t:this.campaignProps;return Object.assign(Object.assign({Template:null!==(n=null===(i=this.template)||void 0===i?void 0:i.name)&&void 0!==n?n:"Molecules","File path":o.divH([o.link(null!==(a=this._dfName)&&void 0!==a?a:"-",(()=>this.download(this.dataFrame,"molecules")),x)],{style:{alignItems:"center"}})},l),{"Number of molecules":this.dataFrame.rowCount.toString(),"Enrichment methods":[this.template.compute.descriptors.enabled?"descriptors":"",...this.template.compute.functions.map((e=>e.name))].filter((e=>e&&""!==e.trim())).join(", "),Filters:this._filterDescriptions.join(", "),"Result Molecules":o.divH([o.link(null!==(r=null===(s=this.dataFrame)||void 0===s?void 0:s.filter.trueCount.toString())&&void 0!==r?r:"0",(()=>{this.download(this.dataFrame,"hits",!0)}),x)],{style:{alignItems:"center"}})})}saveCampaign(i){return Te(this,arguments,void 0,(function*(i,n=!0){var a,s,c,u,d,p;const h=this.campaignId,m=this.filterSettings,v=this.template.name,f=this.dataFrame,g=`System:AppData/HitTriage/Hit Triage/campaigns/${h}/`,y=null!=h?h:yield function(e){return we(this,void 0,void 0,(function*(){return new Promise((t=>we(this,void 0,void 0,(function*(){const i=o.input.string("Campaign name",{value:""});o.dialog("Save Campaign").add(o.div(i.root)).onOK((function(){i.value&&""!==i.value?t(i.value):t(e)})).show()}))))}))}(h),w={};f.columns.toList().forEach((e=>w[e.name]=e.semType));const b={};f.columns.toList().forEach((e=>b[e.name]=e.type));const C={name:y,templateName:v,filters:null!=m?m:{},ingest:{type:"File",query:`${g}${r}`,molColName:this.molColName},status:null!==(s=null!=i?i:null===(a=this.campaign)||void 0===a?void 0:a.status)&&void 0!==s?s:"In Progress",createDate:null!==(u=null===(c=this.campaign)||void 0===c?void 0:c.createDate)&&void 0!==u?u:U(new Date),campaignFields:null!==(p=null===(d=this.campaign)||void 0===d?void 0:d.campaignFields)&&void 0!==p?p:this.campaignProps,columnSemTypes:w,rowCount:f.rowCount,filteredRowCount:f.filter.trueCount,template:this.template,columnTypes:b};this.campaign=C;const A=t.DataFrame.fromColumns(f.columns.toList().filter((e=>!e.name.startsWith("~")))).toCsv();yield De.files.writeAsText(`Hit Triage/campaigns/${h}/${r}`,A);const T=this._pickView.saveLayout();T?C.layout=T.viewState:e.shell.warning("Layout cound not be saved"),yield De.files.writeAsText(`Hit Triage/campaigns/${h}/${l}`,JSON.stringify(C)),n&&e.shell.info("Campaign saved successfully.")}))}}var Se=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};function Ne(i,n){return Se(this,void 0,void 0,(function*(){var a,s,r,l,c,u,p,h,m,v,f;const w=yield De.files.list("Hit Design/templates");let b=!1,C=!1;const A=w.map((e=>e.name.slice(0,-5))),x=[];for(const e of w)try{const t=JSON.parse(yield De.files.readAsText(e));x.push(t.key)}catch(e){console.error(e)}const N=t.Func.find({tags:[d]}),I={};N.forEach((e=>{var t;I[null!==(t=e.friendlyName)&&void 0!==t?t:e.name]=e}));const E=o.input.choice("Submit function",{value:null,items:[null,...Object.keys(I)]});E.nullable=!0,E.value=null!==(s=null===(a=null==n?void 0:n.submit)||void 0===a?void 0:a.fName)&&void 0!==s?s:null,E.setTooltip("Select function to be called upon submitting");const _=o.divText("Template name is empty or already exists",{classes:"hit-triage-error-div"}),F=o.divText("Template key is empty or already exists",{classes:"hit-triage-error-div"}),V=ae();function O(){var e,t,i,n;if(""===B.value||A.includes(null!==(t=null===(e=B.value)||void 0===e?void 0:e.trim())&&void 0!==t?t:"")){const e=null!==(i=B.input.offsetLeft)&&void 0!==i?i:0,t=null!==(n=B.input.offsetWidth)&&void 0!==n?n:0;_.style.marginLeft=`${e}px`,_.style.width=`${t}px`,_.style.opacity="100%",_.style.borderTop="1px solid red",b=!0}else _.style.borderTop="none",_.style.opacity="0%",b=!1}const B=o.input.string("Name",{value:null!==(r=null==n?void 0:n.name)&&void 0!==r?r:"",onValueChanged:O});function P(){var e,t,i,n;if(""===k.value||x.includes(null!==(t=null===(e=k.value)||void 0===e?void 0:e.trim())&&void 0!==t?t:"")){const e=null!==(i=k.input.offsetLeft)&&void 0!==i?i:0,t=null!==(n=k.input.offsetWidth)&&void 0!==n?n:0;F.style.marginLeft=`${e}px`,F.style.width=`${t}px`,F.style.borderTop="1px solid red",F.style.opacity="100%",C=!0}else F.style.opacity="0%",F.style.borderTop="none",C=!1}const k=o.input.string("Key",{value:null!==(l=null==n?void 0:n.key)&&void 0!==l?l:"",onValueChanged:P});k.setTooltip("Template key used for campaign prefix"),B.setTooltip("Template name"),B.root.style.borderBottom="none",k.root.style.borderBottom="none",_.style.opacity="0%",F.style.opacity="0%";let L=null;const j={compute:{descriptors:{enabled:!0,args:null!==(p=null===(u=null===(c=null==n?void 0:n.compute)||void 0===c?void 0:c.descriptors)||void 0===u?void 0:u.args)&&void 0!==p?p:[]},functions:null!==(m=null===(h=null==n?void 0:n.compute)||void 0===h?void 0:h.functions)&&void 0!==m?m:[]}},D=yield te(i,(e=>{L=e}),(()=>null),j,!1);D.root.classList.add("hit-triage-new-template-functions-input");const R=le(null==n?void 0:n.campaignFields),$=function(e){const i=[t.Property.fromOptions({name:"Name",type:t.TYPE.STRING})],n=new ne(i,e?e.map((e=>({Name:e}))):void 0,{horizontalInputNames:!0});let o={};return n.onItemAdded.subscribe((e=>{o={}})),n.onAddingItemChanged.subscribe((e=>{e&&(o=e.item)})),{getFields:function(){const e=n.items.filter((e=>e.Name)).map((e=>e.Name));return o.Name&&""!==o.Name&&e.push(o.Name),e},fieldsDiv:n.root}}(null==n?void 0:n.stages),M=o.divV([o.divV([B,_]),o.divV([k,F]),V.dataFileInput,R.fieldsDiv]),H=o.h2("Stages");o.tooltip.bind(H,'Define Stages for designed molecules. For example, "Design", "Synthesis", "Test", etc.');const U=o.h2("Compute");o.tooltip.bind(U,'Define functions to be calculated for each molecule. For example, "Descriptors", "Descriptors:Descriptors", etc.');const q=o.div([o.h2("Details"),M,H,$.fieldsDiv,U,D.root,o.h2("Submit"),E.root],"ui-form"),Y=o.buttonsInput([]);q.appendChild(Y);const W=null!==(f=null===(v=Y.getElementsByClassName("ui-input-editor"))||void 0===v?void 0:v[0])&&void 0!==f?f:Y,J=new Promise((e=>{const t=o.button(S,(()=>e()));W.appendChild(t)})),G=new Promise((t=>{const i=o.bigButton(T,(()=>function(){return Se(this,void 0,void 0,(function*(){var i,n,o,a,s,r;if(O(),P(),D.okProxy(),b||!B.value||""===B.value)return void e.shell.error("Template name is empty or already exists");if(C||!k.value||""===k.value)return void e.shell.error("Template key is empty or already exists");const l=E.value?I[E.value]:void 0,c=Object.assign({name:B.value,key:k.value,campaignFields:R.getFields(),stages:$.getFields(),layoutViewState:null!==(i=V.getLayoutViewState())&&void 0!==i?i:void 0,compute:{descriptors:{enabled:!!(null===(n=null==L?void 0:L.descriptors)||void 0===n?void 0:n.length),args:null!==(o=null==L?void 0:L.descriptors)&&void 0!==o?o:[]},functions:Object.entries(null!==(a=null==L?void 0:L.externals)&&void 0!==a?a:{}).map((([e,t])=>{const i=e.split(":");return{name:i[1],package:i[0],args:t}})),scripts:Object.entries(null!==(s=null==L?void 0:L.scripts)&&void 0!==s?s:{}).filter((([e,t])=>e.startsWith(g)&&3===e.split(":").length)).map((([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}})),queries:Object.entries(null!==(r=null==L?void 0:L.queries)&&void 0!==r?r:{}).filter((([e,t])=>e.startsWith(y)&&3===e.split(":").length)).map((([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}}))}},l?{submit:{fName:l.name,package:l.package.name}}:{});var u;u=c,De.files.writeAsText(`Hit Design/templates/${u.name}.json`,JSON.stringify(u)),e.shell.info("Template created successfully"),t(c)}))}()));W.appendChild(i)}));return{root:q,template:G,cancelPromise:J}}))}var Ie=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};class Ee extends ue{constructor(t){super(t),this.name="Hit Design",e.shell.windows.showHelp=!0,e.shell.windows.help.showHelp(De.webRoot+"README_HD.md"),this.checkCampaign().then((e=>{this.app.campaign=e,this.init()}))}onActivated(){e.shell.windows.showHelp=!0,e.shell.windows.help.showHelp(De.webRoot+"README_HD.md")}init(e){return Ie(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0);try{const t=o.h1(N),i=o.h1(I,{style:{marginLeft:"10px"}}),n=he.appHeader({iconPath:De.webRoot+"/images/icons/hit-design-icon.png",learnMoreUrl:"https://github.com/datagrok-ai/public/blob/master/packages/HitTriage/README_HD.md",description:"-  Configure your own workflow using the template editor\n-  Sketch molecules in the molecular spreadsheet\n-  Annotate and share ideas with the team\n-  Calculate different molecular properties\n-  Save campaigns and continue from where you left off\n-  Submit final selection to the function of your choice"}),a=o.div(),s=o.divH([]),r=o.div([s,a],"ui-form"),l=yield this.getCampaignsTable();X()(this.root).empty(),this.root.appendChild(o.div([o.divV([n,t],{style:{marginLeft:"10px"}}),l,i,r])),yield this.startNewCampaign(a,s,e),this.app.resetBaseUrl()}finally{o.setUpdateIndicator(this.root,!1)}}))}startNewCampaign(e,t,i){return Ie(this,void 0,void 0,(function*(){var n;const a=(yield De.files.list("Hit Design/templates")).filter((e=>e.name.endsWith(".json"))).map((e=>e.name.slice(0,-5)));i&&!a.includes(i.name)&&a.push(i.name);let s=null;const r=()=>Ie(this,void 0,void 0,(function*(){const t=l.value,n=i&&i.name===t?i:JSON.parse(yield De.files.readAsText("Hit Design/templates/"+t+".json"));s=n;const o=yield this.getNewCampaignAccordeon(n);X()(e).empty(),e.appendChild(o)})),l=o.input.choice("Template",{value:null!==(n=null==i?void 0:i.name)&&void 0!==n?n:a[0],items:a,onValueChanged:()=>Ie(this,void 0,void 0,(function*(){yield r()}))});l.root.style.width="100%";const c=o.icons.add((()=>{this.createNewTemplate()}),C),u=o.icons.copy((()=>{s&&this.createNewTemplate(s)}),"Clone template");c.style.color="#2083d5",l.addOptions(u),l.addOptions(c),yield r(),X()(t).empty(),t.appendChild(l.root)}))}checkCampaign(e){return Ie(this,void 0,void 0,(function*(){var t;const i=location.search,n=new URLSearchParams(i);if(!n.has(s)&&!e)return;const o=null!=e?e:n.get(s);if(!(yield De.files.exists(`Hit Design/campaigns/${o}/${l}`)))return;const a=JSON.parse(yield De.files.readAsText(`Hit Design/campaigns/${o}/${l}`));a&&(this.app.campaign=a);const r=null!==(t=a.template)&&void 0!==t?t:JSON.parse(yield De.files.readAsText(`Hit Design/templates/${a.templateName}.json`));return yield this.app.setTemplate(r,o),e&&q(s,e),a.template=r,a}))}getCampaignsTable(){return Ie(this,void 0,void 0,(function*(){const e=yield z("Hit Design",this.deletedCampaigns),t=o.table(Object.values(e),(e=>[o.link(e.name,(()=>this.setCampaign(e.name)),"",""),e.createDate,e.rowCount,e.status,o.icons.delete((()=>Ie(this,void 0,void 0,(function*(){o.dialog("Delete campaign").add(o.divText(`Are you sure you want to delete campaign ${e.name}?`)).onOK((()=>Ie(this,void 0,void 0,(function*(){yield this.deleteCampaign("Hit Design",e.name),this.deletedCampaigns.push(e.name),yield this.init()})))).show()}))),"Delete campaign")]),["Name","Created","Molecules","Status",""]);return t.style.color="var(--grey-5)",t.style.marginLeft="24px",t}))}setCampaign(e){return Ie(this,void 0,void 0,(function*(){const t=yield this.checkCampaign(e);this.app.campaign=t}))}getNewCampaignAccordeon(i){return Ie(this,void 0,void 0,(function*(){const{root:n,promise:a,cancelPromise:s}=function(i){var n,a;const s=t.DataFrame.create(1),r=s.columns.addNew(m,t.TYPE.STRING);r.semType=t.SEMTYPE.MOLECULE,r.meta.units=t.UNITS.Molecule.SMILES,r.set(0,null),(null===(n=null==i?void 0:i.stages)||void 0===n?void 0:n.length)>0&&s.columns.addNew(h,t.TYPE.STRING).set(0,i.stages[0]);const l=s.columns.addNew(v,t.TYPE.STRING);l.set(0,Ce(l));const c=i.campaignFields.map((e=>e.type===t.SEMTYPE.MOLECULE?Object.assign(Object.assign({},e),{type:"String",semtype:t.SEMTYPE.MOLECULE}):e)).map((e=>t.Property.fromOptions(Object.assign({name:e.name,type:Q[e.type],nullable:!e.required},e.semtype?{semType:e.semtype}:{})))),u={},d=o.input.form(u,c);d.classList.remove("ui-form");const p=o.div([...(null===(a=i.campaignFields)||void 0===a||a.length,[]),d]),f=o.buttonsInput([]);return p.appendChild(f),{promise:new Promise((t=>{const n=o.bigButton(A,(()=>{for(const t of i.campaignFields)if(t.required&&(!u[t.name]||""===u[t.name]))return void e.shell.error(`Field '${t.name}' is required`);t({df:s,campaignProps:u})}));f.appendChild(n)})),root:p,cancelPromise:new Promise((e=>{o.button(S,(()=>e()))}))}}(i);return a.then((e=>Ie(this,void 0,void 0,(function*(){this.app.dataFrame=e.df,yield this.app.setTemplate(i),this.app.campaignProps=e.campaignProps,yield this.app.saveCampaign(void 0,!1),i.layoutViewState&&this.app.campaign&&(this.app.campaign.layout=i.layoutViewState)})))),s.then((()=>{this.init()})),n}))}createNewTemplate(i){return Ie(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0);try{const n=yield Ne(this.app,i),o=new t.ViewBase,a=e.shell.v;o.name="New Template",o.root.appendChild(n.root),o.parentCall=this.app.parentCall,e.shell.addView(o),o.path=new URL(this.app.baseUrl).pathname+"/new-template";const{sub:s}=Y(o,"Hit Design",C,(()=>Ie(this,void 0,void 0,(function*(){e.shell.v=a,o.close()}))));n.template.then((t=>Ie(this,void 0,void 0,(function*(){yield this.init(t),o.close(),W(o),e.shell.v=a,s.unsubscribe()})))),n.cancelPromise.then((()=>Ie(this,void 0,void 0,(function*(){s.unsubscribe(),o.close(),e.shell.v=a}))))}finally{o.setUpdateIndicator(this.root,!1)}}))}}class _e extends ue{constructor(e){super(e),this.name="Submit"}render(){return o.empty(this.root),o.divV([o.h1("Summary"),o.div([o.tableFromMap(this.app.getSummary())])])}onActivated(){this.render()}submit(){return i=this,n=void 0,a=function*(){var i;const n=null===(i=this.app.template)||void 0===i?void 0:i.submit;if(!n)return;const o=t.Func.find({name:n.fName,package:n.package})[0];if(!o)return void e.shell.error(`Function ${n.fName} not found.`);const a=t.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield o.apply({df:a,molecules:this.app.molColName}),this.app.campaign&&(this.app.campaign.status="Submitted"),this.app.saveCampaign("Submitted"),e.shell.info("Submitted successfully.")},new((o=void 0)||(o=Promise))((function(e,t){function s(e){try{l(a.next(e))}catch(e){t(e)}}function r(e){try{l(a.throw(e))}catch(e){t(e)}}function l(t){var i;t.done?e(t.value):(i=t.value,i instanceof o?i:new o((function(e){e(i)}))).then(s,r)}l((a=a.apply(i,n||[])).next())}));var i,n,o,a}}var Fe=i(542),Ve={};Ve.styleTagTransform=R(),Ve.setAttributes=k(),Ve.insert=B().bind(null,"head"),Ve.domAPI=V(),Ve.insertStyleElement=j(),_()(Fe.A,Ve),Fe.A&&Fe.A.locals&&Fe.A.locals;class Oe extends ue{constructor(e){super(e),this.v=null,this.name="Progress Tracker"}render(){return i=this,n=void 0,s=function*(){return new Promise((i=>{var n,a,s,r,l,c,u,d;this.app.dataFrame.columns.names().forEach((e=>{e.startsWith("~")&&this.app.dataFrame.columns.remove(e)}));const p=null===(n=this.app.campaign)||void 0===n?void 0:n.tilesViewerFormSketch;let m=null;if(p&&p.length>0)try{m=JSON.parse(p)}catch(e){console.error("Failed to parse sketch state string",e)}let v=!0;if(!this.v||this.v.isDetached){v=!1,m&&m.elementStates&&(null!==(a=m.elementStates.length)&&void 0!==a?a:0)>0&&(m.elementStates=m.elementStates.filter((e=>{var t;return(null===(t=null==e?void 0:e.viewerSettings)||void 0===t?void 0:t.column)&&this.app.dataFrame.col(e.viewerSettings.column)}))),this.v=t.Viewer.fromType(t.VIEWER.TILE_VIEWER,this.app.dataFrame,Object.assign({lanesColumnName:h,lanes:null!==(r=null===(s=this.app.template)||void 0===s?void 0:s.stages)&&void 0!==r?r:[]},(null!==(c=null===(l=null==m?void 0:m.elementStates)||void 0===l?void 0:l.length)&&void 0!==c?c:0)>0?{sketchState:m}:{}));const e=this.v.getOptions();e.look.sketchState=(null!==(d=null===(u=null==m?void 0:m.elementStates)||void 0===u?void 0:u.length)&&void 0!==d?d:0)>0?m:null,this.v.setOptions(e),this.v.copyViewersLook(this.v)}v?i():(o.empty(this.root),this.root.appendChild(this.v.root),this.v.root.style.height="100%",this.v.root.style.width="100%",setTimeout((()=>{var t,n,a;null===(n=null===(t=this.v)||void 0===t?void 0:t.view)||void 0===n||n._onAdded();const s=null===(a=e.shell.v)||void 0===a?void 0:a.getRibbonPanels();if(s){if(J(s))return void i();const t=o.bigButton("Design view",(()=>{const t=e.shell.view(this.app.designViewName);t&&(e.shell.v=t)})),n=o.bigButton("Submit",(()=>{var e;const t=null===(e=this.app._submitView)||void 0===e?void 0:e.render();if(t){const e=o.dialog("Submit");e.add(t),e.addButton("Save",(()=>{this.app.saveCampaign(),e.close()})),e.addButton("Submit",(()=>{var t;null===(t=this.app._submitView)||void 0===t||t.submit(),e.close()})),e.show()}}));n.classList.add("hit-design-submit-button"),s.push([t,n]),e.shell.v.setRibbonPanels(s)}i()}),5))}))},new((a=void 0)||(a=Promise))((function(e,t){function o(e){try{l(s.next(e))}catch(e){t(e)}}function r(e){try{l(s.throw(e))}catch(e){t(e)}}function l(t){var i;t.done?e(t.value):(i=t.value,i instanceof a?i:new a((function(e){e(i)}))).then(o,r)}l((s=s.apply(i,n||[])).next())}));var i,n,a,s}onActivated(){this.render()}get sketchStateString(){if(!this.v)return null;const e=this.v.props.sketchState;return e&&"object"==typeof e?JSON.stringify(e):null}}const Be=rxjs.operators;var Pe=function(e,t,i,n){return new(i||(i=Promise))((function(o,a){function s(e){try{l(n.next(e))}catch(e){a(e)}}function r(e){try{l(n.throw(e))}catch(e){a(e)}}function l(e){var t;e.done?o(e.value):(t=e.value,t instanceof i?t:new i((function(e){e(t)}))).then(s,r)}l((n=n.apply(e,t||[])).next())}))};class ke extends ye{get infoView(){return this._infoView}get version(){var e,t;return null!==(t=null===(e=this._campaign)||void 0===e?void 0:e.version)&&void 0!==t?t:0}constructor(i){super(i),this._tilesViewTab=null,this._designViewName="Design",this._filePath="System.AppData/HitTriage/Hit Design/campaigns",this._molColName=m,this.campaignProps={},this.processedValues=[],this._extraStageColsCount=0,this._infoView=new Ee(this),this.multiView=new t.MultiView({viewFactories:{[this._infoView.name]:()=>this._infoView}}),this.multiView.tabs.onTabChanged.subscribe((e=>{this.multiView.currentView instanceof ue&&this.multiView.currentView.onActivated()})),this.multiView.parentCall=i,this.mainView=this.multiView,e.events.onCurrentViewChanged.subscribe((()=>Pe(this,void 0,void 0,(function*(){var t,i,n,o,s,r,l,c,u;try{if((null===(t=e.shell.v)||void 0===t?void 0:t.name)===this.currentDesignViewId||(null===(i=e.shell.v)||void 0===i?void 0:i.name)===this.currentTilesViewId){if(e.shell.windows.showHelp=!1,this.setBaseUrl(),q(a,null!==(s=null!==(n=this._campaignId)&&void 0!==n?n:null===(o=this._campaign)||void 0===o?void 0:o.name)&&void 0!==s?s:""),this.currentTilesViewId&&(null===(r=e.shell.v)||void 0===r?void 0:r.name)===this.currentTilesViewId)yield null===(l=this._tilesView)||void 0===l?void 0:l.render();else{const e=null===(c=this._tilesView)||void 0===c?void 0:c.sketchStateString;e&&""!=e&&this.campaign&&(this.campaign.tilesViewerFormSketch=e)}const{sub:t}=Y(e.shell.v,"Hit Design",null===(u=e.shell.v)||void 0===u?void 0:u.name,(()=>{var i,n;e.shell.v=this.mainView,null===(i=this._tilesView)||void 0===i||i.close(),null===(n=this._designView)||void 0===n||n.close(),this._infoView.init(),t.unsubscribe()}))}}catch(e){console.error(e)}}))))}setTemplate(i,n){return Pe(this,void 0,void 0,(function*(){var o,l,c,u,d,p,h,v,f,g,y,w,b;if(n){const t="System.AppData/HitTriage/Hit Design/campaigns";this._filePath=null!==(c=null===(l=this.campaign)||void 0===l?void 0:l.savePath)&&void 0!==c?c:`${t}/${n}/${r}`,this.dataFrame=yield e.dapi.files.readCsv(this._filePath),(null===(u=this._campaign)||void 0===u?void 0:u.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach((([e,t])=>{const i=this.dataFrame.columns.byName(e);i&&t&&(i.semType=t)})),(null===(d=this._campaign)||void 0===d?void 0:d.columnTypes)&&Object.entries(this._campaign.columnTypes).forEach((([e,t])=>{const i=this.dataFrame.columns.byName(e);if(i&&i.type!==t)try{this.dataFrame.changeColumnType(e,t)}catch(e){console.error(e)}}))}else(null===(o=this._designView)||void 0===o?void 0:o.dataFrame)&&e.shell.closeTable(this._designView.dataFrame),this._designView=void 0,n=yield this.getNewCampaignName("Hit Design/campaigns",i.key),q(s,n),this._filePath=`System.AppData/HitTriage/Hit Design/campaigns/${n}/${r}`;if(!this.dataFrame)return void console.error("DataFrame is empty");yield this.dataFrame.meta.detectSemanticTypes(),this._molColName=null!==(h=null===(p=this.dataFrame.columns.bySemType(t.SEMTYPE.MOLECULE))||void 0===p?void 0:p.name)&&void 0!==h?h:m,this._dfName=null!==(v=(b=this.dataFrame).name)&&void 0!==v?v:b.name=n,this._campaignId=n,this.template=i,null!==(f=this._submitView)&&void 0!==f||(this._submitView=new _e(this)),e.shell.windows.showHelp=!1,this._extraStageColsCount=this.dataFrame.rowCount-this.dataFrame.filter.trueCount;const C=this.designView;this.currentDesignViewId=C.name,this.setBaseUrl(),q(a,null!==(w=null!==(g=this._campaignId)&&void 0!==g?g:null===(y=this._campaign)||void 0===y?void 0:y.name)&&void 0!==w?w:""),this.campaign&&(this.campaign.template=i)}))}get campaignId(){return this._campaignId}get designView(){return this._designView=this.getDesignView()}get designViewName(){return this._designViewName}get molColName(){var e,i,n,o;return null!==(e=this._molColName)&&void 0!==e?e:this._molColName=null!==(o=null===(n=null===(i=this.dataFrame)||void 0===i?void 0:i.columns.bySemType(t.SEMTYPE.MOLECULE))||void 0===n?void 0:n.name)&&void 0!==o?o:m}get campaign(){return this._campaign}set campaign(e){this._campaign=e}cacheDuplicateVIDs(){var e;const t=null===(e=this.dataFrame)||void 0===e?void 0:e.col(v);if(!t)return void(this._duplicateVidCache=void 0);const i=t.version,n=new Uint32Array(t.categories.length).fill(0),o=t.getRawData();o.forEach((e=>n[e]++)),this._duplicateVidCache={colVersion:i,valueCounts:n,indexes:o}}get duplicateVidCache(){var e;const t=null===(e=this.dataFrame)||void 0===e?void 0:e.col(v);if(t)return this._duplicateVidCache&&t.version===this._duplicateVidCache.colVersion||this.cacheDuplicateVIDs(),this._duplicateVidCache}getDesignView(){var i,n,a,s,r,l;const c=[],u=null===(i=this.dataFrame.col(this.molColName))||void 0===i?void 0:i.toList().every((e=>!e&&""===e)),d=e.shell.addTableView(this.dataFrame);this._designViewName=null!==(a=null===(n=this.campaign)||void 0===n?void 0:n.name)&&void 0!==a?a:this._designViewName,d.name=this._designViewName,this.processedValues=this.dataFrame.getCol(this.molColName).toList();const p=(i,n)=>Pe(this,void 0,void 0,(function*(){const o=this.template.compute;if(!n||""===n)return;const a=yield function(i,n,o){return be(this,arguments,void 0,(function*(i,n,o,a=[],s=[]){const r=t.TaskBarProgressIndicator.create("Calculating ..."),l=e.chem.convert(i,e.chem.Notation.Unknown,e.chem.Notation.Smiles),c=t.Column.fromStrings(m,[l]),u=t.DataFrame.fromColumns([c]);u.name="HD Single cell values",yield u.meta.detectSemanticTypes();try{n.length&&(yield e.chem.descriptors(u,c.name,n))}catch(e){console.error("Descriptors calculation error",e)}for(const e of o)try{const i=e.args,n=t.Func.find({package:e.package,name:e.name});if(!n.length||!n[0]){console.warn(`Function ${e.name} from package ${e.package} is not found`);continue}const o=n[0],a=o.inputs[0].name,s=o.inputs[1].name;yield o.apply(Object.assign(Object.assign({},i),{[a]:u,[s]:c.name}))}catch(e){console.error(e);continue}for(const t of a){const i=t.args;try{const n=yield e.dapi.scripts.find(t.id);if(n){const e=n.inputs[0].name,t=n.inputs[1].name,o=yield n.apply(Object.assign(Object.assign({},i),{[e]:u,[t]:c.name}));if(o&&o.rowCount===u.rowCount&&"python"===n.language)for(const e of o.columns)e.name=u.columns.getUnusedName(e.name),u.columns.add(e)}}catch(e){console.error(e)}}for(const t of s){const i=t.args;try{const n=yield e.dapi.queries.find(t.id);if(n){const e=n.inputs[0].name,t=[l],o=yield n.apply(Object.assign(Object.assign({},i),{[e]:t}));if(!o||0===o.rowCount)continue;yield G(u,m,o)}}catch(e){console.error(e)}}return r.close(),u}))}(n,o.descriptors.args,o.functions,o.scripts,o.queries);for(const e of a.columns.toList())e.name!==m&&(this.dataFrame.columns.contains(e.name)||(this.dataFrame.columns.addNew(e.name,e.type).semType=e.semType),this.dataFrame.col(e.name).set(i,e.get(0),!1));this.dataFrame.fireValuesChanged(),this.saveCampaign(void 0,!1)}));setTimeout((()=>Pe(this,void 0,void 0,(function*(){var i,n,o,a;d._onAdded(),yield new Promise((e=>setTimeout(e,1e3)));const s=null!==(n=null===(i=this._campaign)||void 0===i?void 0:i.layout)&&void 0!==n?n:null===(o=this.template)||void 0===o?void 0:o.layoutViewState;if(s)try{const e=t.ViewLayout.fromViewState(s);d.loadLayout(e)}catch(e){console.error(e)}u&&e.functions.call("Chem:editMoleculeCell",{cell:d.grid.cell(this._molColName,0)}),c.push(this.dataFrame.onRowsAdded.pipe((0,Be.filter)((()=>!this.isJoining))).subscribe((()=>{var t,i;try{if(this.processedValues=this.dataFrame.getCol(this.molColName).toList(),(null===(t=this.template.stages)||void 0===t?void 0:t.length)>0)for(let e=0;e<this.dataFrame.rowCount;e++){const t=this.dataFrame.col(h).get(e);t&&""!==t&&!(null===(i=this.dataFrame.col(h))||void 0===i?void 0:i.isNone(e))||this.dataFrame.set(h,e,this.template.stages[0])}let n=null;for(let e=0;e<this.dataFrame.rowCount;e++){const t=d.grid.cell(this.molColName,e);t&&(""!==t.cell.value&&null!==t.cell.value||(n=t))}n&&e.functions.call("Chem:editMoleculeCell",{cell:n})}catch(e){console.error(e)}}))),this.dataFrame&&c.push(null===(a=this.dataFrame)||void 0===a?void 0:a.onRowsRemoved.subscribe((()=>{try{this.processedValues=this.dataFrame.getCol(this.molColName).toList()}catch(e){console.error(e)}}))),c.push(e.events.onContextMenu.subscribe((i=>{var n,o,a,s,r,l,c,u,h,m,v,f;try{const e=null===(n=null==i?void 0:i.args)||void 0===n?void 0:n.context;if(!e)return;if((null==e?void 0:e.type)!==t.VIEWER.GRID)return;if(!e.tableView||e.tableView.id!==d.id)return;if((null===(s=null===(a=null===(o=null==i?void 0:i.args)||void 0===o?void 0:o.item)||void 0===a?void 0:a.tableColumn)||void 0===s?void 0:s.name)!==this.molColName||!(null===(l=null===(r=null==i?void 0:i.args)||void 0===r?void 0:r.item)||void 0===l?void 0:l.isTableCell))return;const g=null===(c=null==i?void 0:i.args)||void 0===c?void 0:c.menu;if(!g)return;g.item("Add new row",(()=>{this.dataFrame.rows.addNew(null,!0)})),g.item("Duplicate molecule",(()=>{var e,t,n,o;try{this.dataFrame.rows.addNew(null,!0);let a=null;for(let e=0;e<this.dataFrame.rowCount;e++){const t=d.grid.cell(this.molColName,e);t&&(""!==t.cell.value&&null!==t.cell.value||(a=t))}a&&(a.cell.value=null!==(o=null===(n=null===(t=null===(e=null==i?void 0:i.args)||void 0===e?void 0:e.item)||void 0===t?void 0:t.cell)||void 0===n?void 0:n.value)&&void 0!==o?o:"")}catch(e){console.error(e)}}));const y=null===(h=null===(u=null==i?void 0:i.args)||void 0===u?void 0:u.item)||void 0===h?void 0:h.tableRowIndex,w=null===(f=null===(v=null===(m=null==i?void 0:i.args)||void 0===m?void 0:m.item)||void 0===v?void 0:v.cell)||void 0===f?void 0:f.value;y&&w&&y>-1&&g.item("Re-Run Calculations",(()=>Pe(this,void 0,void 0,(function*(){try{yield p(y,w)}catch(e){console.error(e)}}))))}catch(t){e.log.error(t)}}))),c.push(d.grid.onCellValueEdited.subscribe((t=>Pe(this,void 0,void 0,(function*(){var i,n,o,a,s;try{if((null===(i=t.tableColumn)||void 0===i?void 0:i.name)===h)return void(yield this.saveCampaign(void 0,!1));if((null===(n=t.tableColumn)||void 0===n?void 0:n.name)!==this.molColName)return;const r=t.cell.value,l=t.tableRowIndex;let c=null===(o=this.dataFrame.col(v))||void 0===o?void 0:o.get(l),u=!1;if(r)try{const i=t.tableColumn.toList().map((t=>{try{return e.chem.convert(t,e.chem.Notation.Unknown,e.chem.Notation.Smiles)}catch(e){return""}})),n=e.chem.convert(r,e.chem.Notation.Unknown,e.chem.Notation.Smiles);if((null==i?void 0:i.length)===this.dataFrame.rowCount)for(let e=0;e<i.length;e++)if(i[e]===n&&e!==l&&(null===(a=this.dataFrame.col(v))||void 0===a?void 0:a.get(e))){c=null===(s=this.dataFrame.col(v))||void 0===s?void 0:s.get(e),u=!0;break}}catch(e){console.error(e)}this.duplicateVidCache&&!u&&this.duplicateVidCache.valueCounts[this.duplicateVidCache.indexes[l]]>1&&(c=null),c&&""!==c||(c=Ce(this.dataFrame.col(v))),this.dataFrame.col(v).set(l,c,!1),p(l,r)}catch(e){console.error(e)}}))))),c.push(d.grid.onCellRender.subscribe((e=>{var i;try{const n=e.cell;if(!n||!n.isTableCell||!n.tableColumn||!this.duplicateVidCache||n.tableColumn.name!==v||(null!==(i=n.tableRowIndex)&&void 0!==i?i:-1)<0)return;this.duplicateVidCache.valueCounts[this.duplicateVidCache.indexes[n.tableRowIndex]]>1&&(e.cell.style.backColor=t.Color.setAlpha(t.Color.getCategoricalColor(this.duplicateVidCache.indexes[n.tableRowIndex]),150))}catch(e){}})));const r=e.events.onViewRemoved.subscribe((e=>{e.id===d.id&&(c.forEach((e=>e.unsubscribe())),r.unsubscribe())}))}))),300);const f=null==d?void 0:d.getRibbonPanels();if(f&&!J(f)){const t=()=>Pe(this,void 0,void 0,(function*(){var e;te(this,(e=>Pe(this,void 0,void 0,(function*(){var t,i,n,a,s,r,l,c,u,p;const h=this.template.compute.descriptors.args,m=this.template.compute.functions,v=null!==(t=this.template.compute.scripts)&&void 0!==t?t:[],f=null!==(i=this.template.compute.queries)&&void 0!==i?i:[],w=e.descriptors,b={descriptors:{enabled:!!(null===(n=null==e?void 0:e.descriptors)||void 0===n?void 0:n.length),args:null!==(a=null==e?void 0:e.descriptors)&&void 0!==a?a:[]},functions:Object.entries(null!==(s=null==e?void 0:e.externals)&&void 0!==s?s:{}).map((([e,t])=>{const i=e.split(":");return{name:i[1],package:i[0],args:t}})),scripts:Object.entries(null!==(r=null==e?void 0:e.scripts)&&void 0!==r?r:{}).filter((([e,t])=>e.startsWith(g)&&3===e.split(":").length)).map((([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}})),queries:Object.entries(null!==(l=null==e?void 0:e.queries)&&void 0!==l?l:{}).filter((([e,t])=>e.startsWith(y)&&3===e.split(":").length)).map((([e,t])=>{var i,n;const o=e.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:t}}))};this.template.compute=b,this.campaign.template=this.template;const C=w.filter((e=>!h.includes(e))),A={};Object.entries(null!==(c=null==e?void 0:e.externals)&&void 0!==c?c:{}).filter((([e,t])=>{const i=m.find((t=>`${t.package}:${t.name}`===e));return!i||!Object.entries(t).every((([e,t])=>i.args[e]===t))})).forEach((([e,t])=>{A[e]=t}));const 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function",{value:null,items:[null,...Object.keys(p)]});h.value=null,h.nullable=!0,h.fireChanged(),h.setTooltip("Select function to be called upon submitting");const m=lt(),v=o.divText("Template name is empty or already exists",{classes:"hit-triage-error-div"}),y=o.divText("Template key is empty or already exists",{classes:"hit-triage-error-div"}),b=o.input.string("Name",{value:"",onValueChanged:()=>{""===b.value||r.includes(b.value)?(b.root.style.borderBottom="1px solid red",v.style.opacity="100%"):(b.root.style.borderBottom="none",v.style.opacity="0%")}}),C=o.input.string("Key",{value:"",onValueChanged:()=>{""===C.value||l.includes(C.value)?(C.root.style.borderBottom="1px solid red",y.style.opacity="100%"):(C.root.style.borderBottom="none",y.style.opacity="0%")}});C.setTooltip("Template key used for campaign prefix"),b.setTooltip("Template name"),b.root.style.borderBottom="none",C.root.style.borderBottom="none",v.style.opacity="0%",y.style.opacity="0%";let T=null;const I=yield ot(i,(t=>{T=t}),(()=>null),{compute:{descriptors:{enabled:!0,args:[]},functions:[]}},!1);I.root.classList.add("hit-triage-new-template-functions-input"),0===Object.entries(n).length&&e.Func.find({tags:[c]}).forEach((t=>{var e;n[null!==(e=t.friendlyName)&&void 0!==e?e:t.name]=t}));const S=Object.keys(n),E=o.input.choice(w,{value:S[0],items:S}),N=o.input.choice("Ingest using",{value:"Query",items:["Query","File"],onValueChanged:()=>{"Query"!==N.value?E.root.style.display="none":E.root.style.display="block"}}),_=dt(),F=o.div([o.h2("Details"),o.div([b,v]),o.div([C,y]),N.root,E.root,m.dataFileInput,_.fieldsDiv,o.h2("Compute"),I.root,o.h2("Submit"),h.root],"ui-form"),P=o.buttonsInput([]),V=null!==(a=null===(s=P.getElementsByClassName("ui-input-editor"))||void 0===s?void 0:s[0])&&void 0!==a?a:P;F.appendChild(P);const B=new Promise((t=>{const e=o.button(x,(()=>t()));V.appendChild(e)})),O=new Promise((e=>{const i=o.bigButton(A,(()=>function(){return ct(this,void 0,void 0,(function*(){var i,n,o,s,a,r,l,c;if(I.okProxy(),"100%"===v.style.opacity)return void t.shell.error("Template name is empty or already exists");const u=h.value?p[h.value]:void 0,d=Object.assign(Object.assign({name:b.value,key:C.value,campaignFields:_.getFields(),dataSourceType:null!==(i=N.value)&&void 0!==i?i:"Query",layoutViewState:null!==(n=m.getLayoutViewState())&&void 0!==n?n:void 0,compute:{descriptors:{enabled:!!(null===(o=null==T?void 0:T.descriptors)||void 0===o?void 0:o.length),args:null!==(s=null==T?void 0:T.descriptors)&&void 0!==s?s:[]},functions:Object.entries(null!==(a=null==T?void 0:T.externals)&&void 0!==a?a:{}).map((([t,e])=>{const i=t.split(":");return{name:i[1],package:i[0],args:e}})),scripts:Object.entries(null!==(r=null==T?void 0:T.scripts)&&void 0!==r?r:{}).filter((([t,e])=>t.startsWith(f)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}})),queries:Object.entries(null!==(l=null==T?void 0:T.queries)&&void 0!==l?l:{}).filter((([t,e])=>t.startsWith(g)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}}))}},u?{submit:{fName:u.name,package:u.package.name}}:{}),{queryFunctionName:"Query"===N.value&&null!==(c=E.value)&&void 0!==c?c:void 0});var y;y=d,qt.files.writeAsText(`Hit Triage/templates/${y.name}.json`,JSON.stringify(y)),t.shell.info("Template created successfully"),e(d)}))}()));V.appendChild(i)}));return{root:F,template:O,cancelPromise:B}}))}function dt(t){const i=[e.Property.fromOptions({name:"Name",type:e.TYPE.STRING}),e.Property.fromOptions({name:"Type",type:e.TYPE.STRING,choices:Object.keys(X)}),e.Property.fromOptions({name:"Required",type:e.TYPE.BOOL})],n=new at(i,t?t.map((t=>({Name:t.name,Type:t.type,Required:t.required}))):void 0,{horizontalInputNames:!1});n.root.style.maxWidth="750px";let s={};n.onItemAdded.subscribe((t=>{s={}})),n.onAddingItemChanged.subscribe((t=>{t&&(s=t.item)}));const a=o.h2("Additional fields");o.tooltip.bind(a,"Additional fields to be filled by user for each campaign");const r=o.div([a,n.root]);return{getFields:function(){var t;const e=n.items.filter((t=>t.Name)).map((t=>{var e;return{name:t.Name,type:t.Type,required:null!==(e=t.Required)&&void 0!==e&&e}}));return s.Name&&""!==s.Name&&s.Type&&(null!==(t=s.Required)&&void 0!==t||(s.Required=!1),e.push({name:s.Name,type:s.Type,required:s.Required})),e},fieldsDiv:o.div([r])}}var pt=function(t,e,i,n){return new(i||(i=Promise))((function(o,s){function a(t){try{l(n.next(t))}catch(t){s(t)}}function r(t){try{l(n.throw(t))}catch(t){s(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(a,r)}l((n=n.apply(t,e||[])).next())}))};class ht extends e.ViewBase{constructor(t){super(),this.deletedCampaigns=[],this.app=t}get template(){return this.app.template}onActivated(){}onReset(){}process(){return pt(this,void 0,void 0,(function*(){}))}deleteCampaign(t,e){return pt(this,void 0,void 0,(function*(){yield qt.files.delete(`${t}/campaigns/${e}`)}))}}var mt=i(677),vt={};vt.styleTagTransform=U(),vt.setAttributes=k(),vt.insert=B().bind(null,"head"),vt.domAPI=P(),vt.insertStyleElement=j(),_()(mt.A,vt),mt.A&&mt.A.locals&&mt.A.locals;var ft;!function(e){let i,n;!function(t){t.vert=function(t){return o.divV(t.map((t=>o.render(t))),{classes:"u2-panel"})},t.horz=function(t){return o.divH(t.map((t=>o.render(t))),{classes:"u2-panel"})}}(i=e.panels||(e.panels={})),e.appHeader=function(t){const e=o.iconImage("",t.iconPath);return it()(e).addClass("ui-app-header-icon").css("margin-right","20px"),i.horz([e,i.vert([o.markdown(t.description),t.learnMoreUrl?o.link("Learn more",t.learnMoreUrl):null])])},function(e){e.runAsync=function(e,i){return n=this,s=void 0,r=function*(){o.setUpdateIndicator(e,!0);try{return yield i()}catch(e){t.log.error(e)}finally{o.setUpdateIndicator(e,!1)}},new((a=void 0)||(a=Promise))((function(t,e){function i(t){try{l(r.next(t))}catch(t){e(t)}}function o(t){try{l(r.throw(t))}catch(t){e(t)}}function l(e){var n;e.done?t(e.value):(n=e.value,n instanceof a?n:new a((function(t){t(n)}))).then(i,o)}l((r=r.apply(n,s||[])).next())}));var n,s,a,r}}(n=e.tools||(e.tools={}))}(ft||(ft={}));var gt=function(t,e,i,n){return new(i||(i=Promise))((function(o,s){function a(t){try{l(n.next(t))}catch(t){s(t)}}function r(t){try{l(n.throw(t))}catch(t){s(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(a,r)}l((n=n.apply(t,e||[])).next())}))};const yt={view:[e.Group.defaultGroupsIds["All users"]],edit:[e.Group.defaultGroupsIds["All users"]]};class wt{constructor(t){this.permissions=null!=t?t:yt,this.editGroupsInput=o.input.userGroups("Can Edit"),this.editGroupsInput.root.style.marginBottom="16px",this.viewGroupsInput=o.input.userGroups("Can View")}getDialogContent(){return gt(this,void 0,void 0,(function*(){const e=[],i=[];for(const i of this.permissions.view){const n=yield t.dapi.groups.find(i);n&&e.push(n)}for(const e of this.permissions.edit){const n=yield t.dapi.groups.find(e);n&&i.push(n)}return this.editGroupsInput.value=i,this.viewGroupsInput.value=e,o.divV([this.editGroupsInput.root,this.viewGroupsInput.root])}))}show(t){return gt(this,void 0,void 0,(function*(){var e;const i=yield this.getDialogContent(),n=o.dialog("Edit Permissions").add(i).onOK((()=>{const e=new Set(this.editGroupsInput.value.map((t=>t.id))),i=new Set(this.viewGroupsInput.value.map((t=>t.id)));this.permissions.edit=Array.from(e),e.forEach((t=>i.add(t))),this.permissions.view=Array.from(i),0===this.permissions.view.length&&(this.permissions.view=yt.view),t(this.permissions)}));(null===(e=i.parentElement)||void 0===e?void 0:e.style)&&(i.parentElement.style.overflow="visible"),n.show()}))}}var bt=function(t,e,i,n){return new(i||(i=Promise))((function(o,s){function a(t){try{l(n.next(t))}catch(t){s(t)}}function r(t){try{l(n.throw(t))}catch(t){s(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(a,r)}l((n=n.apply(t,e||[])).next())}))};class Ct extends ht{constructor(e){super(e),this.readmePath=qt.webRoot+"README_HT.md",this.dataSourceFunctionsMap={},this.name="Hit Triage",t.shell.windows.showHelp=!0,t.shell.windows.help.showHelp(this.readmePath),this.checkCampaign().then((t=>{this.app.campaign=t,this.init()}))}onActivated(){t.shell.windows.showHelp=!0,t.shell.windows.help.showHelp(this.readmePath)}init(t){return bt(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0);try{const e=o.h1(I),i=o.h1(S,{style:{marginLeft:"10px"}}),n=ft.appHeader({iconPath:qt.webRoot+"/images/icons/hit-triage-icon.png",learnMoreUrl:"https://github.com/datagrok-ai/public/blob/master/packages/HitTriage/README_HT.md",description:"- Configure your own workflow using the template editor.\n- Calculate different molecular properties.\n- Filter molecules using different criteria.\n- Submit processed dataframe to the function of your choice.\n- Save campaigns and continue any time from where you left off.\n "}),s=o.div(),a=o.div([],{classes:"ui-form"}),r=yield this.getCampaignsTable();yield this.startNewCampaign(s,a,t),it()(this.root).empty(),this.root.appendChild(o.div([o.divV([n,e],{style:{marginLeft:"10px"}}),r,i,a,s])),this.app.resetBaseUrl()}catch(t){throw o.setUpdateIndicator(this.root,!1),t}finally{o.setUpdateIndicator(this.root,!1)}}))}startNewCampaign(t,e,i){return bt(this,void 0,void 0,(function*(){var n;const s=(yield qt.files.list("Hit Triage/templates")).map((t=>t.name.slice(0,-5)));i&&!s.includes(i.name)&&s.push(i.name);const a=()=>bt(this,void 0,void 0,(function*(){const e=r.value,n=i&&i.name===e?i:JSON.parse(yield qt.files.readAsText("Hit Triage/templates/"+e+".json")),o=yield this.getNewCampaignAccordeon(n,t);it()(t).empty(),t.className="ui-form",t.appendChild(o)})),r=o.input.choice("Template",{value:null!==(n=null==i?void 0:i.name)&&void 0!==n?n:s[0],items:s,onValueChanged:()=>bt(this,void 0,void 0,(function*(){yield a()}))}),l=o.icons.add((()=>bt(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0),yield this.createNewTemplate(),o.setUpdateIndicator(this.root,!1)}))),b);r.addOptions(l),yield a(),it()(e).empty(),e.appendChild(r.root)}))}checkCampaign(t){return bt(this,void 0,void 0,(function*(){const e=location.search,i=new URLSearchParams(e);if(!i.has(s)&&!t)return;const n=null!=t?t:i.get(s);if(!(yield qt.files.exists(`Hit Triage/campaigns/${n}/${l}`)))return;const o=JSON.parse(yield qt.files.readAsText(`Hit Triage/campaigns/${n}/${l}`));if(o){if(o.authorUserId&&o.permissions&&!(yield Z(o.authorUserId,o.permissions)))return void this.app.setBaseUrl();this.app.campaign=o}const a=JSON.parse(yield qt.files.readAsText(`Hit Triage/templates/${o.templateName}.json`));return this.app.setTemplate(a,o.filters,n,o.ingest),t&&q(s,t),o}))}getCampaignsTable(){return bt(this,void 0,void 0,(function*(){const t=yield z("Hit Triage",this.deletedCampaigns),i=t=>{var i,n;const s=o.icons.delete((()=>bt(this,void 0,void 0,(function*(){o.dialog("Delete campaign").add(o.divText(`Are you sure you want to delete campaign ${t.name}?`)).onOK((()=>bt(this,void 0,void 0,(function*(){yield this.deleteCampaign("Hit Triage",t.name),this.deletedCampaigns.push(t.name),yield this.init()})))).show()}))),"Delete campaign");return s.style.display="none",Q(null!==(i=t.authorUserId)&&void 0!==i?i:e.User.current().id,null!==(n=t.permissions)&&void 0!==n?n:yt).then((t=>{t&&(s.style.display="inline-block")})),s},n=Object.values(t),s=o.table(n,(t=>[o.link(t.name,(()=>this.setCampaign(t.name)),"",""),t.createDate,t.rowCount,t.filteredRowCount,t.status,i(t)]),["Name","Created","Total","Selected","Status",""]);return s.style.color="var(--grey-5)",s}))}setCampaign(t){return bt(this,void 0,void 0,(function*(){const e=yield this.checkCampaign(t);this.app.campaign=e}))}getNewCampaignAccordeon(i,n){return bt(this,void 0,void 0,(function*(){o.setUpdateIndicator(n,!0);const{root:s,promise:a,cancelPromise:r}=yield function(i,n){return tt(this,void 0,void 0,(function*(){var s,a;const r=o.divText("",{style:{color:"red"}});let l=null;const u=()=>tt(this,void 0,void 0,(function*(){try{if(l=d.value,!l)return;if(yield l.meta.detectSemanticTypes(),!l.columns.bySemType(e.SEMTYPE.MOLECULE))return void(r.innerText="No molecules column found");r.innerText=""}catch(t){r.innerText="Error parsing file"}})),d=o.input.table("Dataframe",{onValueChanged:u});yield u();const p=o.div([d,r]);0===Object.keys(n).length&&e.Func.find({tags:[c]}).forEach((t=>{var e;n[null!==(e=t.friendlyName)&&void 0!==e?e:t.name]=t}));let h=null;const m=()=>tt(this,void 0,void 0,(function*(){const t=n[f.value];h=t.prepare();const e=yield h.getEditor();e.classList.remove("ui-form"),v.innerHTML="",v.appendChild(e)})),v=o.div([]),f=o.input.choice(w,{value:null!==(s=i.queryFunctionName)&&void 0!==s?s:Object.keys(n)[0],items:Object.keys(n),onValueChanged:m});yield m(),i.queryFunctionName&&(null===(a=f.root.getElementsByTagName("select").item(0))||void 0===a||a.setAttribute("disabled","true"));const g=o.div([f,v]);g.style.display="none";const y=o.div([p,g]),b=i.campaignFields.map((t=>t.type===e.SEMTYPE.MOLECULE?Object.assign(Object.assign({},t),{type:"String",semtype:e.SEMTYPE.MOLECULE}):t)).map((t=>e.Property.fromOptions(Object.assign({name:t.name,type:X[t.type],nullable:!t.required},t.semtype?{semType:t.semtype}:{})))),A={},T=b.length?o.input.form(A,b):o.div();T.classList.remove("ui-form"),"File"===i.dataSourceType?(p.style.display="inherit",g.style.display="none"):(p.style.display="none",g.style.display="inherit");const I=o.div([y,...b.length?[T]:[]]),S=o.buttonsInput([]);return I.appendChild(S),{promise:new Promise((e=>{const s=()=>tt(this,void 0,void 0,(function*(){if("File"===i.dataSourceType){if(!l)return void t.shell.error("No file selected");const i=l;i.name=l.name,e({df:i,type:"File",campaignProps:A})}else{const i=n[f.value];if(!i)return void t.shell.error("No function selected");const o={};Object.entries(h.inputs).forEach((([t,e])=>{o[t]=e}));const s=yield i.apply(o);e({df:s,type:"Query",campaignProps:A})}})),a=o.bigButton(C,(()=>s()));S.appendChild(a)})),root:I,cancelPromise:new Promise((t=>{o.button(x,(()=>t()))}))}}))}(i,this.dataSourceFunctionsMap);return o.setUpdateIndicator(n,!1),a.then((t=>bt(this,void 0,void 0,(function*(){this.app.dataFrame=t.df,this.app._fileInputType=t.type,yield this.app.setTemplate(i),this.app.campaignProps=t.campaignProps,yield this.app.saveCampaign(void 0,!1),i.layoutViewState&&this.app.campaign&&(this.app.campaign.layout=i.layoutViewState)})))),r.then((()=>{this.init()})),s}))}createNewTemplate(){return bt(this,void 0,void 0,(function*(){const i=yield ut(this.app,this.dataSourceFunctionsMap),n=new e.ViewBase,o=t.shell.v;n.name="New Template",n.root.appendChild(i.root),n.parentCall=this.app.parentCall,t.shell.addView(n),n.path=new URL(this.app.baseUrl).pathname+"/new-template",n.parentView=o;const{sub:s}=Y(t.shell.v,"Hit Triage",b,(()=>{t.shell.v=o,n.close()}));i.template.then((e=>bt(this,void 0,void 0,(function*(){yield this.init(e),n.close(),W(n),t.shell.v=o,s.unsubscribe()})))),i.cancelPromise.then((()=>{s.unsubscribe(),n.close(),t.shell.v=o}))}))}}class At extends ht{constructor(t){super(t),this.name="Submit"}render(){return o.empty(this.root),o.divV([o.h1("Summary"),o.div([o.tableFromMap(this.app.getSummary())])])}onActivated(){this.render()}submit(){return i=this,n=void 0,s=function*(){var i;const n=null===(i=this.app.template)||void 0===i?void 0:i.submit;if(!n)return;const o=e.Func.find({name:n.fName,package:n.package})[0];if(!o)return void t.shell.error(`Function ${n.fName} not found.`);const s=e.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield o.apply({df:s,molecules:this.app.molColName}),this.app.campaign&&(this.app.campaign.status="Submitted"),this.app.saveCampaign("Submitted"),t.shell.info("Submitted successfully.")},new((o=void 0)||(o=Promise))((function(t,e){function a(t){try{l(s.next(t))}catch(t){e(t)}}function r(t){try{l(s.throw(t))}catch(t){e(t)}}function l(e){var i;e.done?t(e.value):(i=e.value,i instanceof o?i:new o((function(t){t(i)}))).then(a,r)}l((s=s.apply(i,n||[])).next())}));var i,n,o,s}}var Tt=function(t,e,i,n){return new(i||(i=Promise))((function(o,s){function a(t){try{l(n.next(t))}catch(t){s(t)}}function r(t){try{l(n.throw(t))}catch(t){s(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(a,r)}l((n=n.apply(t,e||[])).next())}))};class xt{constructor(t){this.parentCall=t,this.isJoining=!1,this.hasEditPermission=!1,this.resetBaseUrl(),this.computeFunctions=new Promise((t=>Tt(this,void 0,void 0,(function*(){const i=e.Func.find({tags:["HitTriageFunction"]}),n=i.filter((t=>t.type===E.function)),o=i.filter((t=>t.type===E.script)),s=i.filter((t=>t.type===E.query));t({functions:n,scripts:o,queries:s})}))))}setCanEdit(t){return Tt(this,void 0,void 0,(function*(){t.authorUserId&&t.permissions?this.hasEditPermission=yield Q(t.authorUserId,t.permissions):this.hasEditPermission=!0}))}resetBaseUrl(){const t=window.location.href,e=new URL(t);this.baseUrl=e.origin+e.pathname}getFilterType(t){const i=this.dataFrame.col(t);return(null==i?void 0:i.semType)===e.SEMTYPE.MOLECULE?e.FILTER_TYPE.SUBSTRUCTURE:(null==i?void 0:i.type)===e.COLUMN_TYPE.BOOL?e.FILTER_TYPE.BOOL_COLUMNS:(null==i?void 0:i.type)===e.COLUMN_TYPE.STRING?e.FILTER_TYPE.CATEGORICAL:e.FILTER_TYPE.HISTOGRAM}download(t,i,n=!1){const o=document.createElement("a"),s=e.DataFrame.fromColumns(t.columns.toList().filter((t=>!t.name.startsWith("~")))).toCsv({filteredRowsOnly:n});o.setAttribute("href","data:text/plain;charset=utf-8,"+encodeURIComponent(s)),o.setAttribute("download",i+".csv"),o.click()}getNewCampaignName(t,e){return Tt(this,void 0,void 0,(function*(){const i=(yield qt.files.list(t)).map((t=>t.name)).filter((t=>t.startsWith(e)));if(0===i.length)return e+"-1";const n=i.map((t=>t.split("-")[1])).filter(Boolean).map((t=>parseInt(t,10))).sort();return e+"-"+(n[n.length-1]+1).toString()}))}setBaseUrl(){const t=document.title;if(history.replaceState){const e={Title:t,Url:this.baseUrl};history.replaceState(e,e.Title,e.Url)}}unionDataframes(t,i,n){var o,s,a,r,l;const c=null===(s=null===(o=t.col(n))||void 0===o?void 0:o.toList())||void 0===s?void 0:s.filter((t=>!!t)).map((t=>e.chem.convert(t,e.chem.Notation.Unknown,e.chem.Notation.Smiles))),u=null===(r=null===(a=i.col(n))||void 0===a?void 0:a.toList())||void 0===r?void 0:r.filter((t=>!!t)).map((t=>e.chem.convert(t,e.chem.Notation.Unknown,e.chem.Notation.Smiles)));if(!c||!u)throw new Error("Molecule column not found");this.isJoining=!0;try{for(const e of t.columns)i.columns.contains(e.name)||i.columns.addNew(e.name,e.type);for(let e=0;e<c.length;e++)if(!u.includes(c[e])){i.rows.addNew(null,!0);for(const n of t.columns){const t=n.get(e);null===(l=i.col(n.name))||void 0===l||l.set(i.rowCount-1,t,!1)}}}finally{setTimeout((()=>{this.isJoining=!1}),500)}return i}}var It=function(t,e,i,n){return new(i||(i=Promise))((function(o,s){function a(t){try{l(n.next(t))}catch(t){s(t)}}function r(t){try{l(n.throw(t))}catch(t){s(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(a,r)}l((n=n.apply(t,e||[])).next())}))},St=function(t,e,i,n){return new(i||(i=Promise))((function(o,s){function a(t){try{l(n.next(t))}catch(t){s(t)}}function r(t){try{l(n.throw(t))}catch(t){s(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(a,r)}l((n=n.apply(t,e||[])).next())}))};function Et(t){let e=0;if(t.length>1)for(const i of t.toList()){if(!i||!i.startsWith(v[0])||7!==i.length)continue;const t=parseInt(i.substring(1));isNaN(t)||(e=Math.max(t,e))}return`V${"".concat(...new Array(6-(e+1).toString().length).fill("0"))}${e+1}`}function Nt(i,n,o){return St(this,void 0,void 0,(function*(){var s,a;const r=e.TaskBarProgressIndicator.create("Calculating ..."),l=n.col(o);if(!l)throw new Error("There is no molecule column in dataframe");for(let e=0;e<l.length;e++){if(l.isNone(e))continue;const i=l.get(e);if(!i)continue;const n=t.chem.convert(i,t.chem.Notation.Unknown,t.chem.Notation.Smiles);l.set(e,n,!1)}try{i.descriptors&&i.descriptors.length>0&&(yield t.chem.descriptors(n,o,i.descriptors))}catch(t){console.error("Descriptors calculation error",t)}for(const t of Object.keys(i.externals))try{const s=i.externals[t],a=e.Func.find({package:t.split(":")[0],name:t.split(":")[1]})[0],r=a.inputs[0].name,l=a.inputs[1].name;s&&(yield a.apply(Object.assign(Object.assign({},s),{[r]:n,[l]:o})))}catch(t){console.error(t)}for(const t of Object.keys(null!==(s=i.scripts)&&void 0!==s?s:{})){const s=i.scripts[t];if(s){const i=t.split(":"),a=i[2];if(!a)continue;try{const t=i[1],r=e.Func.find({name:t}).filter((t=>t.type===E.script&&t.id===a))[0];if(!r)continue;const l=r.inputs[0].name,c=r.inputs[1].name,u=yield r.apply(Object.assign(Object.assign({},s),{[l]:n,[c]:o}));if(u&&u.rowCount===n.rowCount&&"python"===r.language)for(const t of u.columns)t.name=n.columns.getUnusedName(t.name),n.columns.add(t)}catch(t){console.error(t)}}}for(const t of Object.keys(null!==(a=i.queries)&&void 0!==a?a:{})){const s=i.queries[t];if(s){const i=t.split(":"),a=i[2];if(!a)continue;try{const t=i[1],r=e.Func.find({name:t}).filter((t=>t.type===E.query&&t.id===a))[0];if(!r)continue;const l=r.inputs[0].name,c=n.col(o).toList(),u=yield r.apply(Object.assign(Object.assign({},s),{[l]:c}));u&&(yield J(n,o,u))}catch(t){console.error(t)}}}r.close()}))}var _t=function(t,e,i,n){return new(i||(i=Promise))((function(o,s){function a(t){try{l(n.next(t))}catch(t){s(t)}}function r(t){try{l(n.throw(t))}catch(t){s(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(a,r)}l((n=n.apply(t,e||[])).next())}))};class Ft extends xt{get infoView(){return this._infoView}constructor(i){super(i),this._filterViewName="Hit triage | Pick",this._filterDescriptions=[],this.campaignProps={},this._pickViewPromise=null,this._infoView=new Ct(this),this.multiView=new e.MultiView({viewFactories:{[this._infoView.name]:()=>this._infoView}}),this.multiView.tabs.onTabChanged.subscribe((t=>{this.multiView.currentView instanceof ht&&this.multiView.currentView.onActivated()})),this.multiView.parentCall=i,t.events.onCurrentViewChanged.subscribe((()=>{var e,i,n,o;try{(null===(e=t.shell.v)||void 0===e?void 0:e.name)===this.currentPickViewId&&(t.shell.windows.showHelp=!1,this.setBaseUrl(),q(s,null!==(o=null!==(i=this._campaignId)&&void 0!==i?i:null===(n=this._campaign)||void 0===n?void 0:n.name)&&void 0!==o?o:""))}catch(t){console.error(t)}}))}setTemplate(i,n,o,a){return _t(this,void 0,void 0,(function*(){var r,l,c,u,d,p,h,m,v,y,w,b,C,A,T;if((null===(r=this._pickView)||void 0===r?void 0:r.dataFrame)&&t.shell.closeTable(null===(l=this._pickView)||void 0===l?void 0:l.dataFrame),this._pickView=void 0,o?a&&(this._fileInputType=a.type,"File"===a.type?this.dataFrame=yield t.dapi.files.readCsv(a.query):this.dataFrame=yield t.functions.call(a.query)):(o=yield this.getNewCampaignName("Hit Triage/campaigns",i.key),q(s,o)),!this.dataFrame)return void console.error("Dataframe is empty.");if((null===(c=this._campaign)||void 0===c?void 0:c.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach((([t,e])=>{const i=this.dataFrame.columns.byName(t);i&&i.semType!==e&&(i.semType=e)})),(null===(u=this._campaign)||void 0===u?void 0:u.columnTypes)&&Object.entries(this._campaign.columnTypes).forEach((([t,e])=>{const i=this.dataFrame.columns.byName(t);if(i&&i.type!==e)try{i.convertTo(e)}catch(t){console.error(t)}})),yield this.dataFrame.meta.detectSemanticTypes(),this._molColName=null!==(p=null===(d=this.dataFrame.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===d?void 0:d.name)&&void 0!==p?p:void 0,this._dfName=null!==(h=this.dataFrame.name)&&void 0!==h?h:null==a?void 0:a.query,this.dataFrame.name=null!==(v=null!==(m=this._dfName)&&void 0!==m?m:this.dataFrame.name)&&void 0!==v?v:"Molecules",this._campaignId=o,this.template=(null===(y=this.campaign)||void 0===y?void 0:y.template)?Object.assign(Object.assign({},this.campaign.template),{dataSourceType:i.dataSourceType,queryFunctionName:i.queryFunctionName}):i,this._campaignFilters=n,!n){const t={},e={},n={};i.compute.functions.forEach((e=>{const i=`${e.package}:${e.name}`;t[i]=e.args})),null===(w=i.compute.scripts)||void 0===w||w.forEach((t=>{const i=`${f}:${t.name}:${t.id}`;e[i]=t.args})),null===(b=i.compute.queries)||void 0===b||b.forEach((t=>{const e=`${g}:${t.name}:${t.id}`;n[e]=t.args})),yield Nt({descriptors:i.compute.descriptors.enabled?i.compute.descriptors.args:[],externals:t,scripts:e,queries:n},this.dataFrame,this._molColName)}this.campaign?yield this.setCanEdit(this.campaign):this.hasEditPermission=!0;const x=t.shell.v,I=t.shell.addView(this.pickView);this.currentPickViewId=I.name,this._submitView=new At(this),this.setBaseUrl(),q(s,null!==(T=null!==(C=this._campaignId)&&void 0!==C?C:null===(A=this._campaign)||void 0===A?void 0:A.name)&&void 0!==T?T:"");const S=I;setTimeout((()=>{this._pickViewPromise&&this._pickViewPromise.then((()=>{const{sub:e}=Y(S,"Hit Triage","Pick",(()=>{t.shell.v=x,S.close(),e.unsubscribe()}))}))}),300),t.shell.windows.showHelp=!1}))}get filterSettings(){return this._campaignFilters}get campaignId(){return this._campaignId}get pickView(){return this._pickView=this.getFilterView()}get molColName(){var t,i,n;return null!==(t=this._molColName)&&void 0!==t?t:this._molColName=null===(n=null===(i=this.dataFrame)||void 0===i?void 0:i.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===n?void 0:n.name}get fileInputType(){return this._fileInputType}get campaign(){return this._campaign}set campaign(t){this._campaign=t}getFilterView(){let t=null;this._pickViewPromise=new Promise((e=>{t=e})),this.dataFrame.col(d)||this.dataFrame.columns.addNewBool(d).init(!1);const i=e.TableView.create(this.dataFrame,!1),n=i.getRibbonPanels(),s=o.iconFA("wrench",(()=>_t(this,void 0,void 0,(function*(){ot(this,(t=>_t(this,void 0,void 0,(function*(){var e,i,n,o,s,a,r;const l=this.template.compute.descriptors.args,c=this.template.compute.functions,u=null!==(e=this.template.compute.scripts)&&void 0!==e?e:[],d=null!==(i=this.template.compute.queries)&&void 0!==i?i:[],p=t.descriptors,h={descriptors:{enabled:!!(null===(n=null==t?void 0:t.descriptors)||void 0===n?void 0:n.length),args:null!==(o=null==t?void 0:t.descriptors)&&void 0!==o?o:[]},functions:Object.entries(null!==(s=null==t?void 0:t.externals)&&void 0!==s?s:{}).map((([t,e])=>{const i=t.split(":");return{name:i[1],package:i[0],args:e}})),scripts:Object.entries(null!==(a=null==t?void 0:t.scripts)&&void 0!==a?a:{}).filter((([t,e])=>t.startsWith(f)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}})),queries:Object.entries(null!==(r=null==t?void 0:t.queries)&&void 0!==r?r:{}).filter((([t,e])=>t.startsWith(g)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}}))};this.template.compute=h;const m=p.filter((t=>!l.includes(t))),v=h.functions.filter((t=>{if(!c.some((e=>e.name===t.name&&e.package===t.package)))return!0;const e=c.find((e=>e.name===t.name&&e.package===t.package));return!Object.entries(t.args).every((([t,i])=>e.args[t]===i))})),y=h.scripts.filter((t=>{if(!u.some((e=>e.id===t.id)))return!0;const e=u.find((e=>e.id===t.id));return!Object.entries(t.args).every((([t,i])=>e.args[t]===i))})),w=h.queries.filter((t=>{if(!d.some((e=>e.id===t.id)))return!0;const e=d.find((e=>e.id===t.id));return!Object.entries(t.args).every((([t,i])=>e.args[t]===i))})),b={};v.forEach((t=>{const e=`${t.package}:${t.name}`;b[e]=t.args}));const C={};y.forEach((t=>{const e=`${f}:${t.name}:${t.id}`;C[e]=t.args}));const A={};w.forEach((t=>{const e=`${g}:${t.name}:${t.id}`;A[e]=t.args})),yield Nt({descriptors:m,externals:b,scripts:C,queries:A},this.dataFrame,this._molColName),this.saveCampaign("In Progress",!1)}))),(()=>null),this.template,!0)}))),"Calculate additional properties"),a=o.bigButton("Submit",(()=>{var t;const e=null===(t=this._submitView)||void 0===t?void 0:t.render();if(e){const t=o.dialog("Submit");t.add(e),t.addButton("Save",(()=>{this.saveCampaign(),t.close()})),t.addButton("Submit",(()=>{var e;null===(e=this._submitView)||void 0===e||e.submit(),t.close()})),t.show()}})),r=o.iconFA("share",(()=>_t(this,void 0,void 0,(function*(){var t;yield new wt(null===(t=this.campaign)||void 0===t?void 0:t.permissions).show((t=>{this.campaign.permissions=t,this.saveCampaign(void 0,!0)}))}))),"Edit permissions");a.classList.add("hit-design-submit-button");const l=G(n);return n.push([s,...this.hasEditPermission?[r]:[],...l?[]:[a]]),i.setRibbonPanels(n),i.name=this._filterViewName,setTimeout((()=>_t(this,void 0,void 0,(function*(){var n,o,s;i._onAdded(),yield new Promise((t=>setTimeout(t,1e3)));const a=i.filters(this._campaignFilters?{filters:this._campaignFilters}:void 0),r=null!==(o=null===(n=this._campaign)||void 0===n?void 0:n.layout)&&void 0!==o?o:null===(s=this.template)||void 0===s?void 0:s.layoutViewState;if(r)try{const t=e.ViewLayout.fromViewState(r);i.loadLayout(t)}catch(t){console.error(t)}i.dataFrame.onFilterChanged.subscribe((t=>{this._filterDescriptions=Array.from(i.dataFrame.rows.filters),this._campaignFilters=a.getOptions().look.filters})),setTimeout((()=>{this._filterDescriptions=Array.from(i.dataFrame.rows.filters),this._campaignFilters=a.getOptions().look.filters}),300),t&&t()}))),300),i.parentCall=this.parentCall,i}getSummary(){var t,e,i,n,s,a,r;const l=null!==(e=null===(t=this.campaign)||void 0===t?void 0:t.campaignFields)&&void 0!==e?e:this.campaignProps;return Object.assign(Object.assign({Template:null!==(n=null===(i=this.template)||void 0===i?void 0:i.name)&&void 0!==n?n:"Molecules","File path":o.divH([o.link(null!==(s=this._dfName)&&void 0!==s?s:"-",(()=>this.download(this.dataFrame,"molecules")),T)],{style:{alignItems:"center"}})},l),{"Number of molecules":this.dataFrame.rowCount.toString(),"Enrichment methods":[this.template.compute.descriptors.enabled?"descriptors":"",...this.template.compute.functions.map((t=>t.name))].filter((t=>t&&""!==t.trim())).join(", "),Filters:this._filterDescriptions.join(", "),"Result Molecules":o.divH([o.link(null!==(r=null===(a=this.dataFrame)||void 0===a?void 0:a.filter.trueCount.toString())&&void 0!==r?r:"0",(()=>{this.download(this.dataFrame,"hits",!0)}),T)],{style:{alignItems:"center"}})})}saveCampaign(i){return _t(this,arguments,void 0,(function*(i,n=!0){var s,a,c,u,d,p,h,m,v,f;const g=this.campaignId,y=this.filterSettings,w=this.template.name,b=this.dataFrame,C=`System:AppData/HitTriage/Hit Triage/campaigns/${g}/`,A=null!=g?g:yield function(t){return It(this,void 0,void 0,(function*(){return new Promise((e=>It(this,void 0,void 0,(function*(){const i=o.input.string("Campaign name",{value:""});o.dialog("Save Campaign").add(o.div(i.root)).onOK((function(){i.value&&""!==i.value?e(i.value):e(t)})).show()}))))}))}(g),T={};b.columns.toList().forEach((t=>T[t.name]=t.semType));const x={};b.columns.toList().forEach((t=>x[t.name]=t.type));const I=null!==(a=null===(s=this.campaign)||void 0===s?void 0:s.authorUserId)&&void 0!==a?a:t.shell.user.id,S=null!==(u=null===(c=this.campaign)||void 0===c?void 0:c.permissions)&&void 0!==u?u:yt,E={name:A,templateName:w,filters:null!=y?y:{},ingest:{type:"File",query:`${C}${r}`,molColName:this.molColName},status:null!==(p=null!=i?i:null===(d=this.campaign)||void 0===d?void 0:d.status)&&void 0!==p?p:"In Progress",createDate:null!==(m=null===(h=this.campaign)||void 0===h?void 0:h.createDate)&&void 0!==m?m:H(new Date),campaignFields:null!==(f=null===(v=this.campaign)||void 0===v?void 0:v.campaignFields)&&void 0!==f?f:this.campaignProps,columnSemTypes:T,rowCount:b.rowCount,filteredRowCount:b.filter.trueCount,template:this.template,columnTypes:x,authorUserId:I,permissions:S};if(this.campaign=E,!this.hasEditPermission)return t.shell.error("You do not have permission to modify this campaign"),E;const N=e.DataFrame.fromColumns(b.columns.toList().filter((t=>!t.name.startsWith("~")))).toCsv();yield qt.files.writeAsText(`Hit Triage/campaigns/${g}/${r}`,N);const _=this._pickView.saveLayout();return _?E.layout=_.viewState:t.shell.warning("Layout cound not be saved"),yield qt.files.writeAsText(`Hit Triage/campaigns/${g}/${l}`,JSON.stringify(E)),n&&t.shell.info("Campaign saved successfully."),E}))}}var Pt=function(t,e,i,n){return new(i||(i=Promise))((function(o,s){function a(t){try{l(n.next(t))}catch(t){s(t)}}function r(t){try{l(n.throw(t))}catch(t){s(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(a,r)}l((n=n.apply(t,e||[])).next())}))};function Vt(i,n){return Pt(this,void 0,void 0,(function*(){var s,a,r,l,c,d,p,h,m,v,y;const w=yield qt.files.list("Hit Design/templates");let b=!1,C=!1;const T=w.map((t=>t.name.slice(0,-5))),I=[];for(const t of w)try{const e=JSON.parse(yield qt.files.readAsText(t));I.push(e.key)}catch(t){console.error(t)}const S=e.Func.find({tags:[u]}),E={};S.forEach((t=>{var e;E[null!==(e=t.friendlyName)&&void 0!==e?e:t.name]=t}));const N=o.input.choice("Submit function",{value:null,items:[null,...Object.keys(E)]});N.nullable=!0,N.value=null!==(a=null===(s=null==n?void 0:n.submit)||void 0===s?void 0:s.fName)&&void 0!==a?a:null,N.setTooltip("Select function to be called upon submitting");const _=o.divText("Template name is empty or already exists",{classes:"hit-triage-error-div"}),F=o.divText("Template key is empty or already exists",{classes:"hit-triage-error-div"}),P=lt();function V(){var t,e,i,n;if(""===B.value||T.includes(null!==(e=null===(t=B.value)||void 0===t?void 0:t.trim())&&void 0!==e?e:"")){const t=null!==(i=B.input.offsetLeft)&&void 0!==i?i:0,e=null!==(n=B.input.offsetWidth)&&void 0!==n?n:0;_.style.marginLeft=`${t}px`,_.style.width=`${e}px`,_.style.opacity="100%",_.style.borderTop="1px solid red",b=!0}else _.style.borderTop="none",_.style.opacity="0%",b=!1}const B=o.input.string("Name",{value:null!==(r=null==n?void 0:n.name)&&void 0!==r?r:"",onValueChanged:V});function O(){var t,e,i,n;if(""===k.value||I.includes(null!==(e=null===(t=k.value)||void 0===t?void 0:t.trim())&&void 0!==e?e:"")){const t=null!==(i=k.input.offsetLeft)&&void 0!==i?i:0,e=null!==(n=k.input.offsetWidth)&&void 0!==n?n:0;F.style.marginLeft=`${t}px`,F.style.width=`${e}px`,F.style.borderTop="1px solid red",F.style.opacity="100%",C=!0}else F.style.opacity="0%",F.style.borderTop="none",C=!1}const k=o.input.string("Key",{value:null!==(l=null==n?void 0:n.key)&&void 0!==l?l:"",onValueChanged:O});k.setTooltip("Template key used for campaign prefix"),B.setTooltip("Template name"),B.root.style.borderBottom="none",k.root.style.borderBottom="none",_.style.opacity="0%",F.style.opacity="0%";let L=null;const j={compute:{descriptors:{enabled:!0,args:null!==(p=null===(d=null===(c=null==n?void 0:n.compute)||void 0===c?void 0:c.descriptors)||void 0===d?void 0:d.args)&&void 0!==p?p:[]},functions:null!==(m=null===(h=null==n?void 0:n.compute)||void 0===h?void 0:h.functions)&&void 0!==m?m:[]}},D=yield ot(i,(t=>{L=t}),(()=>null),j,!1);D.root.classList.add("hit-triage-new-template-functions-input");const U=dt(null==n?void 0:n.campaignFields),R=function(t){const i=[e.Property.fromOptions({name:"Name",type:e.TYPE.STRING})],n=new at(i,t?t.map((t=>({Name:t}))):void 0,{horizontalInputNames:!0});let o={};return n.onItemAdded.subscribe((t=>{o={}})),n.onAddingItemChanged.subscribe((t=>{t&&(o=t.item)})),{getFields:function(){const t=n.items.filter((t=>t.Name)).map((t=>t.Name));return o.Name&&""!==o.Name&&t.push(o.Name),t},fieldsDiv:n.root}}(null==n?void 0:n.stages),$=o.divV([o.divV([B,_]),o.divV([k,F]),P.dataFileInput,U.fieldsDiv]),M=o.h2("Stages");o.tooltip.bind(M,'Define Stages for designed molecules. For example, "Design", "Synthesis", "Test", etc.');const H=o.h2("Compute");o.tooltip.bind(H,'Define functions to be calculated for each molecule. For example, "Descriptors", "Descriptors:Descriptors", etc.');const q=o.div([o.h2("Details"),$,M,R.fieldsDiv,H,D.root,o.h2("Submit"),N.root],"ui-form"),Y=o.buttonsInput([]);q.appendChild(Y);const W=null!==(y=null===(v=Y.getElementsByClassName("ui-input-editor"))||void 0===v?void 0:v[0])&&void 0!==y?y:Y,G=new Promise((t=>{const e=o.button(x,(()=>t()));W.appendChild(e)})),J=new Promise((e=>{const i=o.bigButton(A,(()=>function(){return Pt(this,void 0,void 0,(function*(){var i,n,o,s,a,r;if(V(),O(),D.okProxy(),b||!B.value||""===B.value)return void t.shell.error("Template name is empty or already exists");if(C||!k.value||""===k.value)return void t.shell.error("Template key is empty or already exists");const l=N.value?E[N.value]:void 0,c=Object.assign({name:B.value,key:k.value,campaignFields:U.getFields(),stages:R.getFields(),layoutViewState:null!==(i=P.getLayoutViewState())&&void 0!==i?i:void 0,compute:{descriptors:{enabled:!!(null===(n=null==L?void 0:L.descriptors)||void 0===n?void 0:n.length),args:null!==(o=null==L?void 0:L.descriptors)&&void 0!==o?o:[]},functions:Object.entries(null!==(s=null==L?void 0:L.externals)&&void 0!==s?s:{}).map((([t,e])=>{const i=t.split(":");return{name:i[1],package:i[0],args:e}})),scripts:Object.entries(null!==(a=null==L?void 0:L.scripts)&&void 0!==a?a:{}).filter((([t,e])=>t.startsWith(f)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}})),queries:Object.entries(null!==(r=null==L?void 0:L.queries)&&void 0!==r?r:{}).filter((([t,e])=>t.startsWith(g)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}}))}},l?{submit:{fName:l.name,package:l.package.name}}:{});var u;u=c,qt.files.writeAsText(`Hit Design/templates/${u.name}.json`,JSON.stringify(u)),t.shell.info("Template created successfully"),e(c)}))}()));W.appendChild(i)}));return{root:q,template:J,cancelPromise:G}}))}var Bt=function(t,e,i,n){return new(i||(i=Promise))((function(o,s){function a(t){try{l(n.next(t))}catch(t){s(t)}}function r(t){try{l(n.throw(t))}catch(t){s(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(a,r)}l((n=n.apply(t,e||[])).next())}))};class Ot extends ht{constructor(e){super(e),this.name="Hit Design",t.shell.windows.showHelp=!0,t.shell.windows.help.showHelp(qt.webRoot+"README_HD.md"),this.checkCampaign().then((t=>{this.app.campaign=t,this.init()}))}onActivated(){t.shell.windows.showHelp=!0,t.shell.windows.help.showHelp(qt.webRoot+"README_HD.md")}init(t){return Bt(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0);try{const e=o.h1(I),i=o.h1(S,{style:{marginLeft:"10px"}}),n=ft.appHeader({iconPath:qt.webRoot+"/images/icons/hit-design-icon.png",learnMoreUrl:"https://github.com/datagrok-ai/public/blob/master/packages/HitTriage/README_HD.md",description:"-  Configure your own workflow using the template editor\n-  Sketch molecules in the molecular spreadsheet\n-  Annotate and share ideas with the team\n-  Calculate different molecular properties\n-  Save campaigns and continue from where you left off\n-  Submit final selection to the function of your choice"}),s=o.div(),a=o.divH([]),r=o.div([a,s],"ui-form"),l=yield this.getCampaignsTable();it()(this.root).empty(),this.root.appendChild(o.div([o.divV([n,e],{style:{marginLeft:"10px"}}),l,i,r])),yield this.startNewCampaign(s,a,t),this.app.resetBaseUrl()}finally{o.setUpdateIndicator(this.root,!1)}}))}startNewCampaign(e,i,n){return Bt(this,void 0,void 0,(function*(){var s;const a=(yield qt.files.list("Hit Design/templates")).filter((t=>t.name.endsWith(".json"))).map((t=>t.name.slice(0,-5)));n&&!a.includes(n.name)&&a.push(n.name);let r=null,l=!0;const c=()=>Bt(this,void 0,void 0,(function*(){if(!l)return;const t=u.value,i=n&&n.name===t?n:JSON.parse(yield qt.files.readAsText("Hit Design/templates/"+t+".json"));r=i;const o=yield this.getNewCampaignAccordeon(i);it()(e).empty(),e.appendChild(o)})),u=o.input.choice("Template",{value:null!==(s=null==n?void 0:n.name)&&void 0!==s?s:a[0],items:a,onValueChanged:()=>Bt(this,void 0,void 0,(function*(){yield c()}))});u.root.style.width="100%";const d=o.icons.add((()=>{this.createNewTemplate()}),b),p=o.icons.copy((()=>{r&&this.createNewTemplate(r)}),"Clone template"),h=o.icons.delete((()=>{!u.value||u.items.length<2||o.dialog("Delete template").add(o.divText(`Are you sure you want to delete template ${u.value}?`)).onOK((()=>Bt(this,void 0,void 0,(function*(){try{const e=u.value;yield qt.files.delete(`Hit Design/templates/${e}.json`),l=!1,u.items=u.items.filter((t=>t!==e)),u.value=u.items[0],l=!0,yield c(),t.shell.info("Template "+e+" was deleted successfully")}catch(e){l=!0,t.shell.error("Failed to delete template "+u.value),console.error(e)}})))).show()}),"Delete template");d.style.color="#2083d5",u.addOptions(h),u.addOptions(p),u.addOptions(d),yield c(),it()(i).empty(),i.appendChild(u.root)}))}checkCampaign(t){return Bt(this,void 0,void 0,(function*(){var e;const i=location.search,n=new URLSearchParams(i);if(!n.has(a)&&!t)return;const o=null!=t?t:n.get(a);if(!(yield qt.files.exists(`Hit Design/campaigns/${o}/${l}`)))return;const s=JSON.parse(yield qt.files.readAsText(`Hit Design/campaigns/${o}/${l}`));if(s){if(s.authorUserId&&s.permissions&&!(yield Z(s.authorUserId,s.permissions)))return void this.app.setBaseUrl();this.app.campaign=s}const r=null!==(e=s.template)&&void 0!==e?e:JSON.parse(yield qt.files.readAsText(`Hit Design/templates/${s.templateName}.json`));return yield this.app.setTemplate(r,o),t&&q(a,t),s.template=r,s}))}getCampaignsTable(){return Bt(this,void 0,void 0,(function*(){const i=yield z("Hit Design",this.deletedCampaigns),n=i=>{var n,s;const a=o.icons.delete((()=>Bt(this,void 0,void 0,(function*(){o.dialog("Delete campaign").add(o.divText(`Are you sure you want to delete campaign ${i.name}?`)).onOK((()=>Bt(this,void 0,void 0,(function*(){yield this.deleteCampaign("Hit Design",i.name),this.deletedCampaigns.push(i.name),yield this.init()})))).show()}))),"Delete campaign"),r=o.iconFA("share",(()=>Bt(this,void 0,void 0,(function*(){yield new wt(i.permissions).show((e=>Bt(this,void 0,void 0,(function*(){var n;try{i.permissions=e,null!==(n=i.authorUserId)&&void 0!==n||(i.authorUserId=t.shell.user.id),yield qt.files.writeAsText(`Hit Design/campaigns/${i.name}/${l}`,JSON.stringify(i)),t.shell.info("Permissions updated for campaign "+i.name)}catch(e){t.shell.error("Failed to update permissions for campaign "+i.name),console.error(e)}}))))}))),"Manage campaign permissions");return a.style.display="none",r.style.display="none",Q(null!==(n=i.authorUserId)&&void 0!==n?n:e.User.current().id,null!==(s=i.permissions)&&void 0!==s?s:yt).then((t=>{t&&(a.style.display="inline-block",r.style.display="inline-block")})),[r,a]},s=o.table(Object.values(i),(t=>[o.link(t.name,(()=>this.setCampaign(t.name)),"",""),t.createDate,t.rowCount,t.status,...n(t)]),["Name","Created","Molecules","Status",""]);return s.style.color="var(--grey-5)",s.style.marginLeft="24px",s}))}setCampaign(t){return Bt(this,void 0,void 0,(function*(){const e=yield this.checkCampaign(t);this.app.campaign=e}))}getNewCampaignAccordeon(i){return Bt(this,void 0,void 0,(function*(){const{root:n,promise:s,cancelPromise:a}=function(i){var n,s;const a=e.DataFrame.create(1),r=a.columns.addNew(h,e.TYPE.STRING);r.semType=e.SEMTYPE.MOLECULE,r.meta.units=e.UNITS.Molecule.SMILES,r.set(0,null),(null===(n=null==i?void 0:i.stages)||void 0===n?void 0:n.length)>0&&a.columns.addNew(p,e.TYPE.STRING).set(0,i.stages[0]);const l=a.columns.addNew(m,e.TYPE.STRING);l.set(0,Et(l));const c=i.campaignFields.map((t=>t.type===e.SEMTYPE.MOLECULE?Object.assign(Object.assign({},t),{type:"String",semtype:e.SEMTYPE.MOLECULE}):t)).map((t=>e.Property.fromOptions(Object.assign({name:t.name,type:X[t.type],nullable:!t.required},t.semtype?{semType:t.semtype}:{})))),u={},d=o.input.form(u,c);d.classList.remove("ui-form");const v=o.div([...(null===(s=i.campaignFields)||void 0===s||s.length,[]),d]),f=o.buttonsInput([]);return v.appendChild(f),{promise:new Promise((e=>{const n=o.bigButton(C,(()=>{for(const e of i.campaignFields)if(e.required&&(!u[e.name]||""===u[e.name]))return void t.shell.error(`Field '${e.name}' is required`);e({df:a,campaignProps:u})}));f.appendChild(n)})),root:v,cancelPromise:new Promise((t=>{o.button(x,(()=>t()))}))}}(i);return s.then((t=>Bt(this,void 0,void 0,(function*(){this.app.dataFrame=t.df,yield this.app.setTemplate(i),this.app.campaignProps=t.campaignProps,yield this.app.saveCampaign(void 0,!1),i.layoutViewState&&this.app.campaign&&(this.app.campaign.layout=i.layoutViewState)})))),a.then((()=>{this.init()})),n}))}createNewTemplate(i){return Bt(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0);try{const n=yield Vt(this.app,i),o=new e.ViewBase,s=t.shell.v;o.name="New Template",o.root.appendChild(n.root),o.parentCall=this.app.parentCall,t.shell.addView(o),o.path=new URL(this.app.baseUrl).pathname+"/new-template";const{sub:a}=Y(o,"Hit Design",b,(()=>Bt(this,void 0,void 0,(function*(){t.shell.v=s,o.close()}))));n.template.then((e=>Bt(this,void 0,void 0,(function*(){yield this.init(e),o.close(),W(o),t.shell.v=s,a.unsubscribe()})))),n.cancelPromise.then((()=>Bt(this,void 0,void 0,(function*(){a.unsubscribe(),o.close(),t.shell.v=s}))))}finally{o.setUpdateIndicator(this.root,!1)}}))}}class kt extends ht{constructor(t){super(t),this.name="Submit"}render(){return o.empty(this.root),o.divV([o.h1("Summary"),o.div([o.tableFromMap(this.app.getSummary())])])}onActivated(){this.render()}submit(){return i=this,n=void 0,s=function*(){var i;const n=null===(i=this.app.template)||void 0===i?void 0:i.submit;if(!n)return;const o=e.Func.find({name:n.fName,package:n.package})[0];if(!o)return void t.shell.error(`Function ${n.fName} not found.`);const s=e.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield o.apply({df:s,molecules:this.app.molColName}),this.app.campaign&&(this.app.campaign.status="Submitted"),this.app.saveCampaign("Submitted"),t.shell.info("Submitted successfully.")},new((o=void 0)||(o=Promise))((function(t,e){function a(t){try{l(s.next(t))}catch(t){e(t)}}function r(t){try{l(s.throw(t))}catch(t){e(t)}}function l(e){var i;e.done?t(e.value):(i=e.value,i instanceof o?i:new o((function(t){t(i)}))).then(a,r)}l((s=s.apply(i,n||[])).next())}));var i,n,o,s}}var Lt=i(542),jt={};jt.styleTagTransform=U(),jt.setAttributes=k(),jt.insert=B().bind(null,"head"),jt.domAPI=P(),jt.insertStyleElement=j(),_()(Lt.A,jt),Lt.A&&Lt.A.locals&&Lt.A.locals;class Dt extends ht{constructor(t){super(t),this.v=null,this.name="Progress Tracker"}render(){return i=this,n=void 0,a=function*(){return new Promise((i=>{var n,s,a,r,l,c,u,d;this.app.dataFrame.columns.names().forEach((t=>{t.startsWith("~")&&this.app.dataFrame.columns.remove(t)}));const h=null===(n=this.app.campaign)||void 0===n?void 0:n.tilesViewerFormSketch;let m=null;if(h&&h.length>0)try{m=JSON.parse(h)}catch(t){console.error("Failed to parse sketch state string",t)}let v=!0;if(!this.v||this.v.isDetached){v=!1,m&&m.elementStates&&(null!==(s=m.elementStates.length)&&void 0!==s?s:0)>0&&(m.elementStates=m.elementStates.filter((t=>{var e;return(null===(e=null==t?void 0:t.viewerSettings)||void 0===e?void 0:e.column)&&this.app.dataFrame.col(t.viewerSettings.column)}))),this.v=e.Viewer.fromType(e.VIEWER.TILE_VIEWER,this.app.dataFrame,Object.assign({lanesColumnName:p,lanes:null!==(r=null===(a=this.app.template)||void 0===a?void 0:a.stages)&&void 0!==r?r:[]},(null!==(c=null===(l=null==m?void 0:m.elementStates)||void 0===l?void 0:l.length)&&void 0!==c?c:0)>0?{sketchState:m}:{}));const t=this.v.getOptions();t.look.sketchState=(null!==(d=null===(u=null==m?void 0:m.elementStates)||void 0===u?void 0:u.length)&&void 0!==d?d:0)>0?m:null,this.v.setOptions(t),this.v.copyViewersLook(this.v)}v?i():(o.empty(this.root),this.root.appendChild(this.v.root),this.v.root.style.height="100%",this.v.root.style.width="100%",setTimeout((()=>{var e,n,s;null===(n=null===(e=this.v)||void 0===e?void 0:e.view)||void 0===n||n._onAdded();const a=null===(s=t.shell.v)||void 0===s?void 0:s.getRibbonPanels();if(a){if(G(a))return void i();const e=o.bigButton("Design view",(()=>{const e=t.shell.view(this.app.designViewName);e&&(t.shell.v=e)})),n=o.bigButton("Submit",(()=>{var t;const e=null===(t=this.app._submitView)||void 0===t?void 0:t.render();if(e){const t=o.dialog("Submit");t.add(e),t.addButton("Save",(()=>{this.app.saveCampaign(),t.close()})),t.addButton("Submit",(()=>{var e;null===(e=this.app._submitView)||void 0===e||e.submit(),t.close()})),t.show()}}));n.classList.add("hit-design-submit-button"),a.push([e,n]),t.shell.v.setRibbonPanels(a)}i()}),5))}))},new((s=void 0)||(s=Promise))((function(t,e){function o(t){try{l(a.next(t))}catch(t){e(t)}}function r(t){try{l(a.throw(t))}catch(t){e(t)}}function l(e){var i;e.done?t(e.value):(i=e.value,i instanceof s?i:new s((function(t){t(i)}))).then(o,r)}l((a=a.apply(i,n||[])).next())}));var i,n,s,a}onActivated(){this.render()}get sketchStateString(){if(!this.v)return null;const t=this.v.props.sketchState;return t&&"object"==typeof t?JSON.stringify(t):null}}const Ut=rxjs.operators;var Rt=function(t,e,i,n){return new(i||(i=Promise))((function(o,s){function a(t){try{l(n.next(t))}catch(t){s(t)}}function r(t){try{l(n.throw(t))}catch(t){s(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(a,r)}l((n=n.apply(t,e||[])).next())}))};class $t extends xt{get infoView(){return this._infoView}get version(){var t,e;return null!==(e=null===(t=this._campaign)||void 0===t?void 0:t.version)&&void 0!==e?e:0}constructor(i){super(i),this._tilesViewTab=null,this._designViewName="Design",this._filePath="System.AppData/HitTriage/Hit Design/campaigns",this._molColName=h,this.campaignProps={},this.processedValues=[],this._extraStageColsCount=0,this._infoView=new Ot(this),this.multiView=new e.MultiView({viewFactories:{[this._infoView.name]:()=>this._infoView}}),this.multiView.tabs.onTabChanged.subscribe((t=>{this.multiView.currentView instanceof ht&&this.multiView.currentView.onActivated()})),this.multiView.parentCall=i,this.mainView=this.multiView,t.events.onCurrentViewChanged.subscribe((()=>Rt(this,void 0,void 0,(function*(){var e,i,n,o,a,r,l,c,u;try{if((null===(e=t.shell.v)||void 0===e?void 0:e.name)===this.currentDesignViewId||(null===(i=t.shell.v)||void 0===i?void 0:i.name)===this.currentTilesViewId){if(t.shell.windows.showHelp=!1,this.setBaseUrl(),q(s,null!==(a=null!==(n=this._campaignId)&&void 0!==n?n:null===(o=this._campaign)||void 0===o?void 0:o.name)&&void 0!==a?a:""),this.currentTilesViewId&&(null===(r=t.shell.v)||void 0===r?void 0:r.name)===this.currentTilesViewId)yield null===(l=this._tilesView)||void 0===l?void 0:l.render();else{const t=null===(c=this._tilesView)||void 0===c?void 0:c.sketchStateString;t&&""!=t&&this.campaign&&(this.campaign.tilesViewerFormSketch=t)}const{sub:e}=Y(t.shell.v,"Hit Design",null===(u=t.shell.v)||void 0===u?void 0:u.name,(()=>{var i,n;t.shell.v=this.mainView,null===(i=this._tilesView)||void 0===i||i.close(),null===(n=this._designView)||void 0===n||n.close(),this._infoView.init(),e.unsubscribe()}))}}catch(t){console.error(t)}}))))}setTemplate(i,n){return Rt(this,void 0,void 0,(function*(){var o,l,c,u,d,p,m,v,f,g,y,w,b;if(n){const e="System.AppData/HitTriage/Hit Design/campaigns";this._filePath=null!==(c=null===(l=this.campaign)||void 0===l?void 0:l.savePath)&&void 0!==c?c:`${e}/${n}/${r}`,this.dataFrame=yield t.dapi.files.readCsv(this._filePath),(null===(u=this._campaign)||void 0===u?void 0:u.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach((([t,e])=>{const i=this.dataFrame.columns.byName(t);i&&e&&(i.semType=e)})),(null===(d=this._campaign)||void 0===d?void 0:d.columnTypes)&&Object.entries(this._campaign.columnTypes).forEach((([t,e])=>{const i=this.dataFrame.columns.byName(t);if(i&&i.type!==e)try{this.dataFrame.changeColumnType(t,e)}catch(t){console.error(t)}}))}else(null===(o=this._designView)||void 0===o?void 0:o.dataFrame)&&t.shell.closeTable(this._designView.dataFrame),this._designView=void 0,n=yield this.getNewCampaignName("Hit Design/campaigns",i.key),q(a,n),this._filePath=`System.AppData/HitTriage/Hit Design/campaigns/${n}/${r}`;if(!this.dataFrame)return void console.error("DataFrame is empty");yield this.dataFrame.meta.detectSemanticTypes(),this._molColName=null!==(m=null===(p=this.dataFrame.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===p?void 0:p.name)&&void 0!==m?m:h,this._dfName=null!==(v=(b=this.dataFrame).name)&&void 0!==v?v:b.name=n,this._campaignId=n,this.template=i,null!==(f=this._submitView)&&void 0!==f||(this._submitView=new kt(this)),t.shell.windows.showHelp=!1,this.campaign?yield this.setCanEdit(this.campaign):this.hasEditPermission=!0,this._extraStageColsCount=this.dataFrame.rowCount-this.dataFrame.filter.trueCount;const C=this.designView;this.currentDesignViewId=C.name,this.setBaseUrl(),q(s,null!==(w=null!==(g=this._campaignId)&&void 0!==g?g:null===(y=this._campaign)||void 0===y?void 0:y.name)&&void 0!==w?w:""),this.campaign&&(this.campaign.template=i)}))}get campaignId(){return this._campaignId}get designView(){return this._designView=this.getDesignView()}get designViewName(){return this._designViewName}get molColName(){var t,i,n,o;return null!==(t=this._molColName)&&void 0!==t?t:this._molColName=null!==(o=null===(n=null===(i=this.dataFrame)||void 0===i?void 0:i.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===n?void 0:n.name)&&void 0!==o?o:h}get campaign(){return this._campaign}set campaign(t){this._campaign=t}cacheDuplicateVIDs(){var t;const e=null===(t=this.dataFrame)||void 0===t?void 0:t.col(m);if(!e)return void(this._duplicateVidCache=void 0);const i=e.version,n=new Uint32Array(e.categories.length).fill(0),o=e.getRawData().subarray(0,e.length);o.forEach((t=>n[t]++)),this._duplicateVidCache={colVersion:i,valueCounts:n,indexes:o}}get duplicateVidCache(){var t;const e=null===(t=this.dataFrame)||void 0===t?void 0:t.col(m);if(e)return this._duplicateVidCache&&e.version===this._duplicateVidCache.colVersion||this.cacheDuplicateVIDs(),this._duplicateVidCache}getDesignView(){var i,n,s,a,r,l;const c=[],u=null===(i=this.dataFrame.col(this.molColName))||void 0===i?void 0:i.toList().every((t=>!t&&""===t)),d=t.shell.addTableView(this.dataFrame);this._designViewName=null!==(s=null===(n=this.campaign)||void 0===n?void 0:n.name)&&void 0!==s?s:this._designViewName,d.name=this._designViewName,this.processedValues=this.dataFrame.getCol(this.molColName).toList();const v=(i,n)=>Rt(this,void 0,void 0,(function*(){const o=this.template.compute;if(!n||""===n)return;const s=yield function(i,n,o){return St(this,arguments,void 0,(function*(i,n,o,s=[],a=[]){const r=e.TaskBarProgressIndicator.create("Calculating ..."),l=t.chem.convert(i,t.chem.Notation.Unknown,t.chem.Notation.Smiles),c=e.Column.fromStrings(h,[l]),u=e.DataFrame.fromColumns([c]);u.name="HD Single cell values",yield u.meta.detectSemanticTypes();try{n.length&&(yield t.chem.descriptors(u,c.name,n))}catch(t){console.error("Descriptors calculation error",t)}for(const t of o)try{const i=t.args,n=e.Func.find({package:t.package,name:t.name});if(!n.length||!n[0]){console.warn(`Function ${t.name} from package ${t.package} is not found`);continue}const o=n[0],s=o.inputs[0].name,a=o.inputs[1].name;yield o.apply(Object.assign(Object.assign({},i),{[s]:u,[a]:c.name}))}catch(t){console.error(t);continue}for(const t of s){const i=t.args;try{const n=e.Func.find({name:t.name}).filter((e=>e.type===E.script&&e.id===t.id))[0];if(n){const t=n.inputs[0].name,e=n.inputs[1].name,o=yield n.apply(Object.assign(Object.assign({},i),{[t]:u,[e]:c.name}));if(o&&o.rowCount===u.rowCount&&"python"===n.language)for(const t of o.columns)t.name=u.columns.getUnusedName(t.name),u.columns.add(t)}}catch(t){console.error(t)}}for(const t of a){const i=t.args;try{const n=e.Func.find({name:t.name}).filter((e=>e.type===E.query&&e.id===t.id))[0];if(n){const t=n.inputs[0].name,e=[l],o=yield n.apply(Object.assign(Object.assign({},i),{[t]:e}));if(!o||0===o.rowCount)continue;yield J(u,h,o)}}catch(t){console.error(t)}}return r.close(),u}))}(n,o.descriptors.args,o.functions,o.scripts,o.queries);for(const t of s.columns.toList())t.name!==h&&(this.dataFrame.columns.contains(t.name)||(this.dataFrame.columns.addNew(t.name,t.type).semType=t.semType),this.dataFrame.col(t.name).set(i,t.get(0),!1));this.dataFrame.fireValuesChanged(),this.saveCampaign(void 0,!1)}));setTimeout((()=>Rt(this,void 0,void 0,(function*(){var i,n,o,s;d._onAdded(),yield new Promise((t=>setTimeout(t,1e3)));const a=null!==(n=null===(i=this._campaign)||void 0===i?void 0:i.layout)&&void 0!==n?n:null===(o=this.template)||void 0===o?void 0:o.layoutViewState;if(a)try{const t=e.ViewLayout.fromViewState(a);d.loadLayout(t)}catch(t){console.error(t)}u&&t.functions.call("Chem:editMoleculeCell",{cell:d.grid.cell(this._molColName,0)}),c.push(this.dataFrame.onRowsAdded.pipe((0,Ut.filter)((()=>!this.isJoining))).subscribe((()=>{var e,i;try{if(this.processedValues=this.dataFrame.getCol(this.molColName).toList(),(null===(e=this.template.stages)||void 0===e?void 0:e.length)>0)for(let t=0;t<this.dataFrame.rowCount;t++){const e=this.dataFrame.col(p).get(t);e&&""!==e&&!(null===(i=this.dataFrame.col(p))||void 0===i?void 0:i.isNone(t))||this.dataFrame.set(p,t,this.template.stages[0])}let n=null;for(let t=0;t<this.dataFrame.rowCount;t++){const e=d.grid.cell(this.molColName,t);e&&(""!==e.cell.value&&null!==e.cell.value||(n=e))}n&&t.functions.call("Chem:editMoleculeCell",{cell:n})}catch(t){console.error(t)}}))),this.dataFrame&&c.push(null===(s=this.dataFrame)||void 0===s?void 0:s.onRowsRemoved.subscribe((()=>{try{this.processedValues=this.dataFrame.getCol(this.molColName).toList()}catch(t){console.error(t)}}))),c.push(t.events.onContextMenu.subscribe((i=>{var n,o,s,a,r,l,c,u,p,h,m,f;try{const t=null===(n=null==i?void 0:i.args)||void 0===n?void 0:n.context;if(!t)return;if((null==t?void 0:t.type)!==e.VIEWER.GRID)return;if(!t.tableView||t.tableView.id!==d.id)return;if((null===(a=null===(s=null===(o=null==i?void 0:i.args)||void 0===o?void 0:o.item)||void 0===s?void 0:s.tableColumn)||void 0===a?void 0:a.name)!==this.molColName||!(null===(l=null===(r=null==i?void 0:i.args)||void 0===r?void 0:r.item)||void 0===l?void 0:l.isTableCell))return;const g=null===(c=null==i?void 0:i.args)||void 0===c?void 0:c.menu;if(!g)return;g.item("Add new row",(()=>{this.dataFrame.rows.addNew(null,!0)})),g.item("Duplicate molecule",(()=>{var t,e,n,o;try{this.dataFrame.rows.addNew(null,!0);let s=null;for(let t=0;t<this.dataFrame.rowCount;t++){const e=d.grid.cell(this.molColName,t);e&&(""!==e.cell.value&&null!==e.cell.value||(s=e))}s&&(s.cell.value=null!==(o=null===(n=null===(e=null===(t=null==i?void 0:i.args)||void 0===t?void 0:t.item)||void 0===e?void 0:e.cell)||void 0===n?void 0:n.value)&&void 0!==o?o:"")}catch(t){console.error(t)}}));const y=null===(p=null===(u=null==i?void 0:i.args)||void 0===u?void 0:u.item)||void 0===p?void 0:p.tableRowIndex,w=null===(f=null===(m=null===(h=null==i?void 0:i.args)||void 0===h?void 0:h.item)||void 0===m?void 0:m.cell)||void 0===f?void 0:f.value;w&&(null!=y?y:-1)>-1&&g.item("Re-Run Calculations",(()=>Rt(this,void 0,void 0,(function*(){try{yield v(y,w)}catch(t){console.error(t)}}))))}catch(e){t.log.error(e)}}))),c.push(d.grid.onCellValueEdited.subscribe((e=>Rt(this,void 0,void 0,(function*(){var i,n,o,s,a;try{if((null===(i=e.tableColumn)||void 0===i?void 0:i.name)===p)return void(yield this.saveCampaign(void 0,!1));if((null===(n=e.tableColumn)||void 0===n?void 0:n.name)!==this.molColName)return;const r=e.cell.value,l=e.tableRowIndex;let c=null===(o=this.dataFrame.col(m))||void 0===o?void 0:o.get(l),u=!1;if(r)try{const i=e.tableColumn.toList().map((e=>{try{return t.chem.convert(e,t.chem.Notation.Unknown,t.chem.Notation.Smiles)}catch(t){return""}})),n=t.chem.convert(r,t.chem.Notation.Unknown,t.chem.Notation.Smiles);if((null==i?void 0:i.length)===this.dataFrame.rowCount)for(let t=0;t<i.length;t++)if(i[t]===n&&t!==l&&(null===(s=this.dataFrame.col(m))||void 0===s?void 0:s.get(t))){c=null===(a=this.dataFrame.col(m))||void 0===a?void 0:a.get(t),u=!0;break}}catch(t){console.error(t)}this.duplicateVidCache&&!u&&this.duplicateVidCache.valueCounts[this.duplicateVidCache.indexes[l]]>1&&(c=null),c&&""!==c||(c=Et(this.dataFrame.col(m))),this.dataFrame.col(m).set(l,c,!1),v(l,r)}catch(t){console.error(t)}}))))),c.push(d.grid.onCellRender.subscribe((t=>{var i;try{const n=t.cell;if(!n||!n.isTableCell||!n.tableColumn||!this.duplicateVidCache||n.tableColumn.name!==m||(null!==(i=n.tableRowIndex)&&void 0!==i?i:-1)<0)return;this.duplicateVidCache.valueCounts[this.duplicateVidCache.indexes[n.tableRowIndex]]>1&&(t.cell.style.backColor=e.Color.setAlpha(e.Color.getCategoricalColor(this.duplicateVidCache.indexes[n.tableRowIndex]),150))}catch(t){}})));const r=t.events.onViewRemoved.subscribe((t=>{t.id===d.id&&(c.forEach((t=>t.unsubscribe())),r.unsubscribe())}))}))),300);const y=null==d?void 0:d.getRibbonPanels();if(y&&!G(y)){const e=()=>Rt(this,void 0,void 0,(function*(){var t;ot(this,(t=>Rt(this,void 0,void 0,(function*(){var e,i,n,s,a,r,l,c,u,p;const h=this.template.compute.descriptors.args,m=this.template.compute.functions,v=null!==(e=this.template.compute.scripts)&&void 0!==e?e:[],y=null!==(i=this.template.compute.queries)&&void 0!==i?i:[],w=t.descriptors,b={descriptors:{enabled:!!(null===(n=null==t?void 0:t.descriptors)||void 0===n?void 0:n.length),args:null!==(s=null==t?void 0:t.descriptors)&&void 0!==s?s:[]},functions:Object.entries(null!==(a=null==t?void 0:t.externals)&&void 0!==a?a:{}).map((([t,e])=>{const i=t.split(":");return{name:i[1],package:i[0],args:e}})),scripts:Object.entries(null!==(r=null==t?void 0:t.scripts)&&void 0!==r?r:{}).filter((([t,e])=>t.startsWith(f)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}})),queries:Object.entries(null!==(l=null==t?void 0:t.queries)&&void 0!==l?l:{}).filter((([t,e])=>t.startsWith(g)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}}))};this.template.compute=b,this.campaign.template=this.template;const C=w.filter((t=>!h.includes(t))),A={};Object.entries(null!==(c=null==t?void 0:t.externals)&&void 0!==c?c:{}).filter((([t,e])=>{const i=m.find((e=>`${e.package}:${e.name}`===t));return!i||!Object.entries(e).every((([t,e])=>i.args[t]===e))})).forEach((([t,e])=>{A[t]=e}));const T={};Object.entries(null!==(u=null==t?void 0:t.scripts)&&void 0!==u?u:{}).filter((([t,e])=>{const i=v.find((e=>`${f}:${e.name}:${e.id}`===t));return!i||!Object.entries(e).every((([t,e])=>i.args[t]===e))})).forEach((([t,e])=>{T[t]=e}));const x={};Object.entries(null!==(p=null==t?void 0:t.queries)&&void 0!==p?p:{}).filter((([t,e])=>{const i=y.find((e=>`${g}:${e.name}:${e.id}`===t));return!i||!Object.entries(e).every((([t,e])=>i.args[t]===e))})).forEach((([t,e])=>{x[t]=e})),o.setUpdateIndicator(d.grid.root,!0);try{yield Nt({descriptors:C,externals:A,scripts:T,queries:x},this.dataFrame,this.molColName),this.dataFrame.fireValuesChanged()}finally{o.setUpdateIndicator(d.grid.root,!1),this.saveCampaign(void 0,!1)}}))),(()=>null),null===(t=this.campaign)||void 0===t?void 0:t.template,!0)})),i=o.iconFA("wrench",e,"Calculate additional properties"),n=o.icons.add((()=>{var t;null===(t=this.dataFrame)||void 0===t||t.rows.addNew(null,!0)}),"Add new row"),s=o.iconFA("share",(()=>Rt(this,void 0,void 0,(function*(){var t;yield new wt(null===(t=this.campaign)||void 0===t?void 0:t.permissions).show((t=>{this.campaign.permissions=t,this.saveCampaign(void 0,!0)}))}))),"Edit campaign permissions"),c=o.bigButton("Progress tracker",(()=>{var e;this.currentTilesViewId&&t.shell.view(this.currentTilesViewId)&&(null===(e=t.shell.view(this.currentTilesViewId))||void 0===e||e.close()),this._tilesView=new Dt(this),this._tilesView.parentCall=this.parentCall,this._tilesViewTab=t.shell.addView(this._tilesView),this.currentTilesViewId=this._tilesViewTab.name,this._tilesView.onActivated(),t.shell.v=t.shell.view(this.currentTilesViewId)})),u=o.bigButton("Submit",(()=>{var t;const e=null===(t=this._submitView)||void 0===t?void 0:t.render();if(e){const t=o.dialog("Submit");t.add(e),t.addButton("Save",(()=>{this.saveCampaign(),t.close()})),t.addButton("Submit",(()=>{var e;null===(e=this._submitView)||void 0===e||e.submit(),t.close()})),t.show()}}));u.classList.add("hit-design-submit-button");const p=[u];null!==(l=null===(r=null===(a=this.template)||void 0===a?void 0:a.stages)||void 0===r?void 0:r.length)&&void 0!==l&&l&&p.unshift(c),this.campaign&&this.template&&!this.campaign.template&&(this.campaign.template=this.template),this.hasEditPermission&&p.unshift(s),p.unshift(i),p.unshift(n),y.push(p),d.setRibbonPanels(y)}return d.parentCall=this.parentCall,d}getSummary(){var i,n,s,a;const l=()=>{var t,e;const i=this._filePath.indexOf(null!==(t=this.campaignId)&&void 0!==t?t:null===(e=this._campaign)||void 0===e?void 0:e.name);return-1===i?this._filePath:this._filePath.substring(0,i-1)},c=Object.assign({},null!==(n=null===(i=this.campaign)||void 0===i?void 0:i.campaignFields)&&void 0!==n?n:this.campaignProps);return this.template&&this.template.campaignFields&&Object.entries(c).forEach((([i,n])=>{const o=this.template.campaignFields.find((t=>t.name===i));o&&"Date"===o.type&&n?"Invalid Date"!==new Date(n).toString()?c[i]=new Date(n).toLocaleDateString():n.date?c[i]=new Date(n.date).toLocaleDateString():c[i]=n:o&&o.type===e.SEMTYPE.MOLECULE&&n&&(c[i]=t.chem.drawMolecule(n))})),Object.assign(Object.assign({Template:null!==(a=null===(s=this.template)||void 0===s?void 0:s.name)&&void 0!==a?a:"Molecules","File path":(()=>{const e=o.icons.edit((()=>{const i=l(),a=o.input.string("Path",{value:i}),c=a.root.getElementsByTagName("label").item(0);c&&c.remove(),a.root.style.width="100%";const u=o.button("Save",(()=>Rt(this,void 0,void 0,(function*(){const i=yield function(){return Rt(this,void 0,void 0,(function*(){const e=a.value;return e&&""!==e.trim()?!!(yield t.dapi.files.exists(e))||(t.shell.error("Given folder does not exist"),!1):(t.shell.error("Path can not be empty"),!1)}))}();if(!i)return;const c=a.value;c.endsWith("/")?this._filePath=`${c}${this.campaignId}/${r}`:this._filePath=`${c}/${this.campaignId}/${r}`,this._campaign&&(this._campaign.savePath=this._filePath),yield this.saveCampaign(void 0,!0),o.empty(s);const u=l();n=o.link(u,(()=>{var t,e,i;return this.download(this.dataFrame,null!==(i=null!==(t=this.campaignId)&&void 0!==t?t:null===(e=this._campaign)||void 0===e?void 0:e.name)&&void 0!==i?i:"Molecules")}),T),s.appendChild(n),s.appendChild(e)})))),d=o.button("Cancel",(()=>{o.empty(s),s.appendChild(n),s.appendChild(e)}));o.empty(s),a.addOptions(d),a.addOptions(u),s.appendChild(a.root)}),"Edit file path");e.style.marginLeft="5px";const i=l();let n=o.link(i,(()=>{var t,e,i;return this.download(this.dataFrame,null!==(i=null!==(t=this.campaignId)&&void 0!==t?t:null===(e=this._campaign)||void 0===e?void 0:e.name)&&void 0!==i?i:"Molecules")}),T);const s=o.divH([n,e],{style:{alignItems:"center"}});return s})()},c),{"Number of molecules":(this.dataFrame.rowCount-this._extraStageColsCount).toString(),"Enrichment methods":[this.template.compute.descriptors.enabled?"descriptors":"",...this.template.compute.functions.map((t=>t.name))].filter((t=>t&&""!==t.trim())).join(", ")})}saveCampaign(i){return Rt(this,arguments,void 0,(function*(i,n=!0){var o,s,a,r,c,u,d,p,h,v,f,g,y,w,b,C,A,T;const x=this.campaignId,I=this.template.name,S=this.dataFrame,E=x,N={};S.columns.toList().forEach((t=>N[t.name]=t.semType));const _={};S.columns.toList().forEach((t=>_[t.name]=t.type));const F=null!==(r=null!==(s=null===(o=this._tilesView)||void 0===o?void 0:o.sketchStateString)&&void 0!==s?s:null===(a=this.campaign)||void 0===a?void 0:a.tilesViewerFormSketch)&&void 0!==r?r:void 0,P=null!==(u=null===(c=this.campaign)||void 0===c?void 0:c.authorUserId)&&void 0!==u?u:t.shell.user.id,V=null!==(p=null===(d=this.campaign)||void 0===d?void 0:d.permissions)&&void 0!==p?p:yt,B={name:E,templateName:I,status:null!==(v=null!=i?i:null===(h=this.campaign)||void 0===h?void 0:h.status)&&void 0!==v?v:"In Progress",createDate:null!==(g=null===(f=this.campaign)||void 0===f?void 0:f.createDate)&&void 0!==g?g:H(new Date),campaignFields:null!==(w=null===(y=this.campaign)||void 0===y?void 0:y.campaignFields)&&void 0!==w?w:this.campaignProps,columnSemTypes:N,rowCount:null!==(C=null===(b=S.col(m))||void 0===b?void 0:b.toList().filter((t=>"StageDefiningRow"!==t)).length)&&void 0!==C?C:0,filteredRowCount:S.filter.trueCount,savePath:this._filePath,columnTypes:_,tilesViewerFormSketch:F,version:this.version+1,authorUserId:P,permissions:V};if(!this.hasEditPermission)return t.shell.error("You do not have permission to modify this campaign"),B;const O=`Hit Design/campaigns/${x}/${l}`;let k=S;if(yield qt.files.exists(O)){const e=JSON.parse(yield qt.files.readAsText(O));if((null!==(A=e.version)&&void 0!==A?A:0)>this.version&&(B.version=Math.max(this.version,null!==(T=e.version)&&void 0!==T?T:0)+1,yield t.dapi.files.exists(this._filePath)))try{const e=yield t.dapi.files.readCsv(this._filePath);k=this.unionDataframes(e,S,this.molColName)}catch(t){console.error(t)}}const L=e.DataFrame.fromColumns(k.columns.toList().filter((t=>!t.name.startsWith("~")))).toCsv();yield t.dapi.files.writeAsText(this._filePath,L);const j=this._designView.saveLayout();return j?B.layout=j.viewState:t.shell.warning("Layout cound not be saved"),B.template=this.template,yield qt.files.writeAsText(O,JSON.stringify(B)),n&&t.shell.info("Campaign saved successfully."),this.campaign=B,B}))}}class Mt extends e.GridCellRenderer{get name(){return"customGasteigerPNG"}get cellType(){return"customGasteigerPNG"}get defaultHeight(){return 200}get defaultWidth(){return 200}render(t,e,i,n,o,s,a){if(s.gridRow<0||!s.cell.value)return;const r=s.cell.value,l=new Image(n-2,o-2);l.src="data:image/png;base64,"+r,l.onload=function(){t.drawImage(l,e+2,i+2,n-2,o-2)}}}var Ht=function(t,e,i,n){return new(i||(i=Promise))((function(o,s){function a(t){try{l(n.next(t))}catch(t){s(t)}}function r(t){try{l(n.throw(t))}catch(t){s(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(a,r)}l((n=n.apply(t,e||[])).next())}))};const qt=new e.Package;function Yt(t,e){return Ht(this,void 0,void 0,(function*(){yield Jt(t,e,"Hit Triage")}))}function Wt(){return Ht(this,void 0,void 0,(function*(){const e=t.functions.getCurrentCall();return new Ft(e).multiView}))}function Gt(t,e){return Ht(this,void 0,void 0,(function*(){yield Jt(t,e,"Hit Design")}))}function Jt(i,n,o){return Ht(this,void 0,void 0,(function*(){const s=yield z(o,[]);for(const[o,a]of Object.entries(s)){const o="ingest"in a?a.ingest.query:a.savePath;o&&!1!==(yield t.dapi.files.exists(o))&&i.item(a.name).onSelected.subscribe((i=>Ht(this,void 0,void 0,(function*(){try{const i=yield t.dapi.files.readCsv(o);if(!i)return;const s=a.columnSemTypes;if(s)for(const[t,e]of Object.entries(s)){const n=i.columns.byName(t);n&&(n.semType=e)}const r=e.TableView.create(i,!1);n.preview=r;const l=a.layout;l&&r.loadLayout(e.ViewLayout.fromViewState(l))}catch(t){console.error(t)}}))))}}))}function zt(){return Ht(this,void 0,void 0,(function*(){const e=t.functions.getCurrentCall();return new $t(e).multiView}))}function Kt(){return Ht(this,void 0,void 0,(function*(){const e=t.data.demo.molecules(100);return e.name="100 Molecules",e}))}function Qt(){return Ht(this,void 0,void 0,(function*(){const e=t.data.demo.molecules(5e3);return e.name="5000 Molecules",e}))}function Zt(e){return Ht(this,void 0,void 0,(function*(){const i=t.data.demo.molecules(e);return i.name="Variable Molecules number",i}))}function Xt(e,i){return Ht(this,void 0,void 0,(function*(){t.shell.info(e.rowCount),t.shell.info(i)}))}function te(){return new Mt}})(),hittriage=n})();
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