@datagrok/hit-triage 1.1.10 → 1.1.11

package/CHANGELOG.md

@@ -1,5 +1,10 @@
 # HitTriage changelog
 
+## 1.1.11 (2024-06-03)
+
+* Add ability for collaboration on same campaign.
+* Fixed bugs with tiles viewer forms crashing in case of removing columns.
+
 ## 1.1.10 (2024-04-09)
 
 Fixed bugs with tiles viewer forms and functions loading.

package/dist/package.js

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Triage/templates")).map((t=>t.name.slice(0,-5)));i&&!a.includes(i.name)&&a.push(i.name);const s=()=>lt(this,void 0,void 0,(function*(){const e=r.value,n=i&&i.name===e?i:JSON.parse(yield Bt.files.readAsText("Hit Triage/templates/"+e+".json")),o=yield this.getNewCampaignAccordeon(n,t);z()(t).empty(),t.className="ui-form",t.appendChild(o)})),r=o.choiceInput("Template",null!==(n=null==i?void 0:i.name)&&void 0!==n?n:a[0],a,(()=>lt(this,void 0,void 0,(function*(){yield s()})))),l=o.icons.add((()=>lt(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0),yield this.createNewTemplate(),o.setUpdateIndicator(this.root,!1)}))),y);r.addOptions(l),yield s(),z()(e).empty(),e.appendChild(r.root)}))}checkCampaign(t){return lt(this,void 0,void 0,(function*(){const e=location.search,i=new URLSearchParams(e);if(!i.has(a)&&!t)return;const n=null!=t?t:i.get(a);if(!(yield Bt.files.exists(`Hit Triage/campaigns/${n}/campaign.json`)))return;const o=JSON.parse(yield Bt.files.readAsText(`Hit Triage/campaigns/${n}/campaign.json`)),s=JSON.parse(yield Bt.files.readAsText(`Hit Triage/templates/${o.templateName}.json`));return this.app.setTemplate(s,o.filters,n,o.ingest),t&&R(a,t),o}))}getCampaignsTable(){return lt(this,void 0,void 0,(function*(){const t=yield W("Hit Triage",this.deletedCampaigns),e=Object.values(t).map((t=>({name:t.name,createDate:t.createDate,rowCount:t.rowCount,filtered:t.filteredRowCount,status:t.status}))),i=o.table(e,(t=>[o.link(t.name,(()=>this.setCampaign(t.name)),"",""),t.createDate,t.rowCount,t.filtered,t.status,o.icons.delete((()=>lt(this,void 0,void 0,(function*(){o.dialog("Delete campaign").add(o.divText(`Are you sure you want to delete campaign ${t.name}?`)).onOK((()=>lt(this,void 0,void 0,(function*(){yield this.deleteCampaign("Hit Triage",t.name),this.deletedCampaigns.push(t.name),yield this.init()})))).show()}))),"Delete campaign")]),["Name","Created","Total","Selected","Status",""]);return i.style.color="var(--grey-5)",i}))}setCampaign(t){return lt(this,void 0,void 0,(function*(){const e=yield this.checkCampaign(t);this.app.campaign=e}))}getNewCampaignAccordeon(i,n){return lt(this,void 0,void 0,(function*(){o.setUpdateIndicator(n,!0);const{root:a,promise:s,cancelPromise:l}=yield function(i,n){var a,s;return J(this,void 0,void 0,(function*(){const l=o.divText("",{style:{color:"red"}});let c=null;const u=()=>J(this,void 0,void 0,(function*(){try{if(c=d.value,!c)return;if(yield c.meta.detectSemanticTypes(),!c.columns.bySemType(e.SEMTYPE.MOLECULE))return void(l.innerText="No molecules column found");l.innerText=""}catch(t){l.innerText="Error parsing file"}})),d=o.tableInput("Dataframe",null,void 0,u);yield u();const p=o.div([d,l]);0===Object.keys(n).length&&(e.Func.find({tags:[r]}).forEach((t=>{var e;n[null!==(e=t.friendlyName)&&void 0!==e?e:t.name]=t})),(yield t.dapi.queries.include("params,connection").filter("#HitTriageDataSource").list()).forEach((t=>{var e;n[null!==(e=t.friendlyName)&&void 0!==e?e:t.name]=t})));let m=null;const h=()=>J(this,void 0,void 0,(function*(){const t=n[v.value];m=t.prepare();const e=yield m.getEditor();e.classList.remove("ui-form"),f.innerHTML="",f.appendChild(e)})),f=o.div([]),v=o.choiceInput(g,null!==(a=i.queryFunctionName)&&void 0!==a?a:Object.keys(n)[0],Object.keys(n),h);yield h(),i.queryFunctionName&&(null===(s=v.root.getElementsByTagName("select").item(0))||void 0===s||s.setAttribute("disabled","true"));const y=o.div([v,f]);y.style.display="none";const w=o.div([p,y]),C=i.campaignFields.map((t=>t.type===e.SEMTYPE.MOLECULE?Object.assign(Object.assign({},t),{type:"String",semtype:e.SEMTYPE.MOLECULE}):t)).map((t=>e.Property.fromOptions(Object.assign({name:t.name,type:G[t.type],nullable:!t.required},t.semtype?{semType:t.semtype}:{})))),T={},x=C.length?o.input.form(T,C):o.div();x.classList.remove("ui-form"),"File"===i.dataSourceType?(p.style.display="inherit",y.style.display="none"):(p.style.display="none",y.style.display="inherit");const I=o.div([w,...C.length?[x]:[]]),S=o.buttonsInput([]);return I.appendChild(S),{promise:new Promise((e=>{const a=()=>J(this,void 0,void 0,(function*(){if("File"===i.dataSourceType){if(!c)return void t.shell.error("No file selected");const i=c;i.name=c.name,e({df:i,type:"File",campaignProps:T})}else{const i=n[v.value];if(!i)return void t.shell.error("No function selected");const o={};Object.entries(m.inputs).forEach((([t,e])=>{o[t]=e}));const a=yield i.apply(o);e({df:a,type:"Query",campaignProps:T})}})),s=o.bigButton(b,(()=>a()));S.appendChild(s)})),root:I,cancelPromise:new Promise((t=>{o.button(A,(()=>t()))}))}}))}(i,this.dataSourceFunctionsMap);return o.setUpdateIndicator(n,!1),s.then((t=>lt(this,void 0,void 0,(function*(){this.app.dataFrame=t.df,this.app._fileInputType=t.type,yield this.app.setTemplate(i),this.app.campaignProps=t.campaignProps,this.app.saveCampaign(void 0,!1)})))),l.then((()=>{this.init()})),a}))}createNewTemplate(){return lt(this,void 0,void 0,(function*(){const i=yield et(this.app,this.dataSourceFunctionsMap),n=new e.ViewBase,o=t.shell.v;n.name="New Template",n.root.appendChild(i.root),n.parentCall=this.app.parentCall,t.shell.addView(n),n.path=new URL(this.app.baseUrl).pathname+"/new-template",n.parentView=o;const{sub:a}=U(t.shell.v,"Hit Triage",y,(()=>{t.shell.v=o,n.close()}));i.template.then((e=>lt(this,void 0,void 0,(function*(){yield this.init(e),n.close(),$(n),t.shell.v=o,a.unsubscribe()})))),i.cancelPromise.then((()=>{a.unsubscribe(),n.close(),t.shell.v=o}))}))}}class ut extends ot{constructor(t){super(t),this.name="Submit"}render(){return o.empty(this.root),o.divV([o.h1("Summary"),o.div([o.tableFromMap(this.app.getSummary())])])}onActivated(){this.render()}submit(){var i,n,o,a,s;return n=this,o=void 0,s=function*(){const n=null===(i=this.app.template)||void 0===i?void 0:i.submit;if(!n)return;const o=e.Func.find({name:n.fName,package:n.package})[0];if(!o)return void t.shell.error(`Function ${n.fName} not found.`);const a=e.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield o.apply({df:a,molecules:this.app.molColName}),this.app.campaign&&(this.app.campaign.status="Submitted"),this.app.saveCampaign("Submitted"),t.shell.info("Submitted successfully.")},new((a=void 0)||(a=Promise))((function(t,e){function i(t){try{l(s.next(t))}catch(t){e(t)}}function r(t){try{l(s.throw(t))}catch(t){e(t)}}function l(e){var n;e.done?t(e.value):(n=e.value,n instanceof a?n:new a((function(t){t(n)}))).then(i,r)}l((s=s.apply(n,o||[])).next())}))}}var dt=function(t,e,i,n){return new(i||(i=Promise))((function(o,a){function s(t){try{l(n.next(t))}catch(t){a(t)}}function r(t){try{l(n.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(s,r)}l((n=n.apply(t,e||[])).next())}))};class pt{constructor(i){this.parentCall=i,this.resetBaseUrl(),this.computeFunctions=new Promise((i=>dt(this,void 0,void 0,(function*(){const n=e.Func.find({tags:["HitTriageFunction"]}).filter((t=>"function-package"===t.type)),o=yield t.dapi.scripts.include("params").filter("#HitTriageFunction").list(),a=yield t.dapi.queries.include("params,connection").filter("#HitTriageFunction").list();i({functions:n,scripts:o,queries:a})}))))}resetBaseUrl(){const t=window.location.href,e=new URL(t);this.baseUrl=e.origin+e.pathname}getFilterType(t){const i=this.dataFrame.col(t);return(null==i?void 0:i.semType)===e.SEMTYPE.MOLECULE?e.FILTER_TYPE.SUBSTRUCTURE:(null==i?void 0:i.type)===e.COLUMN_TYPE.BOOL?e.FILTER_TYPE.BOOL_COLUMNS:(null==i?void 0:i.type)===e.COLUMN_TYPE.STRING?e.FILTER_TYPE.CATEGORICAL:e.FILTER_TYPE.HISTOGRAM}download(t,i,n=!1){const o=document.createElement("a"),a=e.DataFrame.fromColumns(t.columns.toList().filter((t=>!t.name.startsWith("~")))).toCsv({filteredRowsOnly:n});o.setAttribute("href","data:text/plain;charset=utf-8,"+encodeURIComponent(a)),o.setAttribute("download",i+".csv"),o.click()}getNewCampaignName(t,e){return dt(this,void 0,void 0,(function*(){const i=(yield Bt.files.list(t)).map((t=>t.name)).filter((t=>t.startsWith(e)));if(0===i.length)return e+"-1";const n=i.map((t=>t.split("-")[1])).filter(Boolean).map((t=>parseInt(t,10))).sort();return e+"-"+(n[n.length-1]+1).toString()}))}setBaseUrl(){const t=document.title;if(history.replaceState){const e={Title:t,Url:this.baseUrl};history.replaceState(e,e.Title,e.Url)}}}var mt=function(t,e,i,n){return new(i||(i=Promise))((function(o,a){function s(t){try{l(n.next(t))}catch(t){a(t)}}function r(t){try{l(n.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(s,r)}l((n=n.apply(t,e||[])).next())}))},ht=function(t,e,i,n){return new(i||(i=Promise))((function(o,a){function s(t){try{l(n.next(t))}catch(t){a(t)}}function r(t){try{l(n.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(s,r)}l((n=n.apply(t,e||[])).next())}))};function ft(t){let e=0;if(t.length>1)for(const i of t.toList()){if(!i||!i.startsWith(m[0])||i.length!==m.length)continue;const t=parseInt(i.substring(1));isNaN(t)||(e=Math.max(t,e))}return`V${"".concat(...new Array(m.length-1-(e+1).toString().length).fill("0"))}${e+1}`}function vt(i,n,o){var a,s;return ht(this,void 0,void 0,(function*(){const r=e.TaskBarProgressIndicator.create("Calculating ..."),l=n.col(o);if(!l)throw new Error("There is no molecule column in dataframe");for(let e=0;e<l.length;e++){if(l.isNone(e))continue;const i=l.get(e);if(!i)continue;const n=t.chem.convert(i,t.chem.Notation.Unknown,t.chem.Notation.Smiles);l.set(e,n,!1)}i.descriptors&&i.descriptors.length>0&&(yield t.chem.descriptors(n,o,i.descriptors));for(const t of Object.keys(i.externals))try{const a=i.externals[t],s=e.Func.find({package:t.split(":")[0],name:t.split(":")[1]})[0],r=s.inputs[0].name,l=s.inputs[1].name;a&&(yield s.apply(Object.assign(Object.assign({},a),{[r]:n,[l]:o})))}catch(t){console.error(t)}for(const e of Object.keys(null!==(a=i.scripts)&&void 0!==a?a:{})){const a=i.scripts[e];if(a){const i=e.split(":")[2];if(!i)continue;try{const e=yield t.dapi.scripts.find(i);if(!e)continue;const s=e.inputs[0].name,r=e.inputs[1].name,l=yield e.apply(Object.assign(Object.assign({},a),{[s]:n,[r]:o}));if(l&&l.rowCount===n.rowCount&&"python"===e.language)for(const t of l.columns)t.name=n.columns.getUnusedName(t.name),n.columns.add(t)}catch(t){console.error(t)}}}for(const e of Object.keys(null!==(s=i.queries)&&void 0!==s?s:{})){const a=i.queries[e];if(a){const i=e.split(":")[2];if(!i)continue;try{const e=yield t.dapi.queries.find(i);if(!e)continue;const s=e.inputs[0].name,r=n.col(o).toList(),l=yield e.apply(Object.assign(Object.assign({},a),{[s]:r}));l&&(yield Y(n,o,l))}catch(t){console.error(t)}}}r.close()}))}var gt=function(t,e,i,n){return new(i||(i=Promise))((function(o,a){function s(t){try{l(n.next(t))}catch(t){a(t)}}function r(t){try{l(n.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(s,r)}l((n=n.apply(t,e||[])).next())}))};class yt extends pt{constructor(i){super(i),this._filterViewName="Hit triage | Pick",this._filterDescriptions=[],this.campaignProps={},this._pickViewPromise=null,this._infoView=new ct(this),this.multiView=new e.MultiView({viewFactories:{[this._infoView.name]:()=>this._infoView}}),this.multiView.tabs.onTabChanged.subscribe((t=>{this.multiView.currentView instanceof ot&&this.multiView.currentView.onActivated()})),this.multiView.parentCall=i,t.events.onCurrentViewChanged.subscribe((()=>{var e,i,n,o;try{(null===(e=t.shell.v)||void 0===e?void 0:e.name)===this.currentPickViewId&&(t.shell.windows.showHelp=!1,this.setBaseUrl(),R(a,null!==(o=null!==(i=this._campaignId)&&void 0!==i?i:null===(n=this._campaign)||void 0===n?void 0:n.name)&&void 0!==o?o:""))}catch(t){console.error(t)}}))}get infoView(){return this._infoView}setTemplate(i,n,o,s){var r,l,c,u,d,p,m,h,f,v,g,y,b,w,C;return gt(this,void 0,void 0,(function*(){if((null===(r=this._pickView)||void 0===r?void 0:r.dataFrame)&&t.shell.closeTable(null===(l=this._pickView)||void 0===l?void 0:l.dataFrame),this._pickView=void 0,o?s&&(this._fileInputType=s.type,"File"===s.type?this.dataFrame=yield t.dapi.files.readCsv(s.query):this.dataFrame=yield t.functions.call(s.query)):(o=yield this.getNewCampaignName("Hit Triage/campaigns",i.key),R(a,o)),!this.dataFrame)return void console.error("Dataframe is empty.");if((null===(c=this._campaign)||void 0===c?void 0:c.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach((([t,e])=>{const i=this.dataFrame.columns.byName(t);i&&i.semType!==e&&(i.semType=e)})),(null===(u=this._campaign)||void 0===u?void 0:u.columnTypes)&&Object.entries(this._campaign.columnTypes).forEach((([t,e])=>{const i=this.dataFrame.columns.byName(t);if(i&&i.type!==e)try{i.convertTo(e)}catch(t){console.error(t)}})),yield this.dataFrame.meta.detectSemanticTypes(),this._molColName=null!==(p=null===(d=this.dataFrame.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===d?void 0:d.name)&&void 0!==p?p:void 0,this._dfName=null!==(m=this.dataFrame.name)&&void 0!==m?m:null==s?void 0:s.query,this.dataFrame.name=null!==(f=null!==(h=this._dfName)&&void 0!==h?h:this.dataFrame.name)&&void 0!==f?f:"Molecules",this._campaignId=o,this.template=(null===(v=this.campaign)||void 0===v?void 0:v.template)?Object.assign(Object.assign({},this.campaign.template),{dataSourceType:i.dataSourceType,queryFunctionName:i.queryFunctionName}):i,this._campaignFilters=n,!n){const t={},e={},n={};i.compute.functions.forEach((e=>{const i=`${e.package}:${e.name}`;t[i]=e.args})),null===(g=i.compute.scripts)||void 0===g||g.forEach((t=>{const i=`HTScript:${t.name}:${t.id}`;e[i]=t.args})),null===(y=i.compute.queries)||void 0===y||y.forEach((t=>{const e=`HTQuery:${t.name}:${t.id}`;n[e]=t.args})),yield vt({descriptors:i.compute.descriptors.enabled?i.compute.descriptors.args:[],externals:t,scripts:e,queries:n},this.dataFrame,this._molColName)}const A=t.shell.v,T=t.shell.addView(this.pickView);this.currentPickViewId=T.name,this._submitView=new ut(this),this.setBaseUrl(),R(a,null!==(C=null!==(b=this._campaignId)&&void 0!==b?b:null===(w=this._campaign)||void 0===w?void 0:w.name)&&void 0!==C?C:"");const x=T;setTimeout((()=>{this._pickViewPromise&&this._pickViewPromise.then((()=>{const{sub:e}=U(x,"Hit Triage","Pick",(()=>{t.shell.v=A,x.close(),e.unsubscribe()}))}))}),300),t.shell.windows.showHelp=!1}))}get filterSettings(){return this._campaignFilters}get campaignId(){return this._campaignId}get pickView(){return this._pickView=this.getFilterView()}get molColName(){var t,i,n;return null!==(t=this._molColName)&&void 0!==t?t:this._molColName=null===(n=null===(i=this.dataFrame)||void 0===i?void 0:i.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===n?void 0:n.name}get fileInputType(){return this._fileInputType}get campaign(){return this._campaign}set campaign(t){this._campaign=t}getFilterView(){let t=null;this._pickViewPromise=new Promise((e=>{t=e})),this.dataFrame.col(c)||this.dataFrame.columns.addNewBool(c).init(!1);const i=e.TableView.create(this.dataFrame,!1),n=i.getRibbonPanels(),a=o.iconFA("wrench",(()=>gt(this,void 0,void 0,(function*(){Q(this,(t=>gt(this,void 0,void 0,(function*(){var e,i,n,o,a,s,r;const l=this.template.compute.descriptors.args,c=this.template.compute.functions,u=null!==(e=this.template.compute.scripts)&&void 0!==e?e:[],d=null!==(i=this.template.compute.queries)&&void 0!==i?i:[],p=t.descriptors,m={descriptors:{enabled:!!(null===(n=null==t?void 0:t.descriptors)||void 0===n?void 0:n.length),args:null!==(o=null==t?void 0:t.descriptors)&&void 0!==o?o:[]},functions:Object.entries(null!==(a=null==t?void 0:t.externals)&&void 0!==a?a:{}).map((([t,e])=>{const i=t.split(":");return{name:i[1],package:i[0],args:e}})),scripts:Object.entries(null!==(s=null==t?void 0:t.scripts)&&void 0!==s?s:{}).filter((([t,e])=>t.startsWith(h)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}})),queries:Object.entries(null!==(r=null==t?void 0:t.queries)&&void 0!==r?r:{}).filter((([t,e])=>t.startsWith(f)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}}))};this.template.compute=m;const v=p.filter((t=>!l.includes(t))),g=m.functions.filter((t=>{if(!c.some((e=>e.name===t.name&&e.package===t.package)))return!0;const e=c.find((e=>e.name===t.name&&e.package===t.package));return!Object.entries(t.args).every((([t,i])=>e.args[t]===i))})),y=m.scripts.filter((t=>{if(!u.some((e=>e.id===t.id)))return!0;const e=u.find((e=>e.id===t.id));return!Object.entries(t.args).every((([t,i])=>e.args[t]===i))})),b=m.queries.filter((t=>{if(!d.some((e=>e.id===t.id)))return!0;const e=d.find((e=>e.id===t.id));return!Object.entries(t.args).every((([t,i])=>e.args[t]===i))})),w={};g.forEach((t=>{const e=`${t.package}:${t.name}`;w[e]=t.args}));const C={};y.forEach((t=>{const e=`HTScript:${t.name}:${t.id}`;C[e]=t.args}));const A={};b.forEach((t=>{const e=`HTQuery:${t.name}:${t.id}`;A[e]=t.args})),yield vt({descriptors:v,externals:w,scripts:C,queries:A},this.dataFrame,this._molColName),this.saveCampaign("In Progress",!1)}))),(()=>null),this.template,!0)}))),"Calculate additional properties"),s=o.bigButton("Submit",(()=>{var t;const e=null===(t=this._submitView)||void 0===t?void 0:t.render();if(e){const t=o.dialog("Submit");t.add(e),t.addButton("Save",(()=>{this.saveCampaign(),t.close()})),t.addButton("Submit",(()=>{var e;null===(e=this._submitView)||void 0===e||e.submit(),t.close()})),t.show()}}));s.classList.add("hit-design-submit-button");const r=q(n);return n.push([a,...r?[]:[s]]),i.setRibbonPanels(n),i.name=this._filterViewName,setTimeout((()=>gt(this,void 0,void 0,(function*(){var n;i._onAdded(),yield new Promise((t=>setTimeout(t,1e3)));const o=i.filters(this._campaignFilters?{filters:this._campaignFilters}:void 0);if(null===(n=this._campaign)||void 0===n?void 0:n.layout)try{const t=e.ViewLayout.fromViewState(this._campaign.layout);i.loadLayout(t)}catch(t){console.error(t)}i.dataFrame.onFilterChanged.subscribe((t=>{this._filterDescriptions=Array.from(i.dataFrame.rows.filters),this._campaignFilters=o.getOptions().look.filters})),setTimeout((()=>{this._filterDescriptions=Array.from(i.dataFrame.rows.filters),this._campaignFilters=o.getOptions().look.filters}),300),t&&t()}))),300),i.parentCall=this.parentCall,i}getSummary(){var t,e,i,n,a,s,r;const l=null!==(e=null===(t=this.campaign)||void 0===t?void 0:t.campaignFields)&&void 0!==e?e:this.campaignProps;return Object.assign(Object.assign({Template:null!==(n=null===(i=this.template)||void 0===i?void 0:i.name)&&void 0!==n?n:"Molecules","File path":o.divH([o.link(null!==(a=this._dfName)&&void 0!==a?a:"-",(()=>this.download(this.dataFrame,"molecules")),C)],{style:{alignItems:"center"}})},l),{"Number of molecules":this.dataFrame.rowCount.toString(),"Enrichment methods":[this.template.compute.descriptors.enabled?"descriptors":"",...this.template.compute.functions.map((t=>t.name))].filter((t=>t&&""!==t.trim())).join(", "),Filters:this._filterDescriptions.join(", "),"Result Molecules":o.divH([o.link(null!==(r=null===(s=this.dataFrame)||void 0===s?void 0:s.filter.trueCount.toString())&&void 0!==r?r:"0",(()=>{this.download(this.dataFrame,"hits",!0)}),C)],{style:{alignItems:"center"}})})}saveCampaign(i,n=!0){var a,s,r,l,c,u;return gt(this,void 0,void 0,(function*(){const d=this.campaignId,p=this.filterSettings,m=this.template.name,h=this.dataFrame,f=`System:AppData/HitTriage/Hit Triage/campaigns/${d}/`,v=null!=d?d:yield function(t){return mt(this,void 0,void 0,(function*(){return new Promise((e=>mt(this,void 0,void 0,(function*(){const i=o.stringInput("Campaign name","");o.dialog("Save Campaign").add(o.div(i.root)).onOK((function(){i.value&&""!==i.value?e(i.value):e(t)})).show()}))))}))}(d),g={};h.columns.toList().forEach((t=>g[t.name]=t.semType));const y={};h.columns.toList().forEach((t=>y[t.name]=t.type));const b={name:v,templateName:m,filters:null!=p?p:{},ingest:{type:"File",query:`${f}enriched_table.csv`,molColName:this.molColName},status:null!==(s=null!=i?i:null===(a=this.campaign)||void 0===a?void 0:a.status)&&void 0!==s?s:"In Progress",createDate:null!==(l=null===(r=this.campaign)||void 0===r?void 0:r.createDate)&&void 0!==l?l:M(new Date),campaignFields:null!==(u=null===(c=this.campaign)||void 0===c?void 0:c.campaignFields)&&void 0!==u?u:this.campaignProps,columnSemTypes:g,rowCount:h.rowCount,filteredRowCount:h.filter.trueCount,template:this.template,columnTypes:y};this.campaign=b;const w=e.DataFrame.fromColumns(h.columns.toList().filter((t=>!t.name.startsWith("~")))).toCsv();yield Bt.files.writeAsText(`Hit Triage/campaigns/${d}/enriched_table.csv`,w);const C=this._pickView.saveLayout();C?b.layout=C.viewState:t.shell.warning("Layout cound not be saved"),yield Bt.files.writeAsText(`Hit Triage/campaigns/${d}/campaign.json`,JSON.stringify(b)),n&&t.shell.info("Campaign saved successfully.")}))}}var bt=function(t,e,i,n){return new(i||(i=Promise))((function(o,a){function s(t){try{l(n.next(t))}catch(t){a(t)}}function r(t){try{l(n.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(s,r)}l((n=n.apply(t,e||[])).next())}))};function wt(i,n){var a,s,r,c,u,d,p,m,v,g,y;return bt(this,void 0,void 0,(function*(){const b=yield Bt.files.list("Hit Design/templates");let C=!1,T=!1;const x=b.map((t=>t.name.slice(0,-5))),I=[];for(const t of b)try{const e=JSON.parse(yield Bt.files.readAsText(t));I.push(e.key)}catch(t){console.error(t)}const S=e.Func.find({tags:[l]}),E={};S.forEach((t=>{var e;E[null!==(e=t.friendlyName)&&void 0!==e?e:t.name]=t}));const N=o.choiceInput("Submit function",null,[null,...Object.keys(E)]);N.nullable=!0,N.value=null!==(s=null===(a=null==n?void 0:n.submit)||void 0===a?void 0:a.fName)&&void 0!==s?s:null,N.setTooltip("Select function to be called upon submitting");const _=o.divText("Template name is empty or already exists",{classes:"hit-triage-error-div"}),F=o.divText("Template key is empty or already exists",{classes:"hit-triage-error-div"});function B(){var t,e,i,n;if(""===O.value||x.includes(null!==(e=null===(t=O.value)||void 0===t?void 0:t.trim())&&void 0!==e?e:"")){const t=null!==(i=O.input.offsetLeft)&&void 0!==i?i:0,e=null!==(n=O.input.offsetWidth)&&void 0!==n?n:0;_.style.marginLeft=`${t}px`,_.style.width=`${e}px`,_.style.opacity="100%",_.style.borderTop="1px solid red",C=!0}else _.style.borderTop="none",_.style.opacity="0%",C=!1}const O=o.stringInput("Name",null!==(r=null==n?void 0:n.name)&&void 0!==r?r:"",B);function P(){var t,e,i,n;if(""===k.value||I.includes(null!==(e=null===(t=k.value)||void 0===t?void 0:t.trim())&&void 0!==e?e:"")){const t=null!==(i=k.input.offsetLeft)&&void 0!==i?i:0,e=null!==(n=k.input.offsetWidth)&&void 0!==n?n:0;F.style.marginLeft=`${t}px`,F.style.width=`${e}px`,F.style.borderTop="1px solid red",F.style.opacity="100%",T=!0}else F.style.opacity="0%",F.style.borderTop="none",T=!1}const k=o.stringInput("Key",null!==(c=null==n?void 0:n.key)&&void 0!==c?c:"",P);k.setTooltip("Template key used for campaign prefix"),O.setTooltip("Template name"),O.root.style.borderBottom="none",k.root.style.borderBottom="none",_.style.opacity="0%",F.style.opacity="0%";let V=null;const L={compute:{descriptors:{enabled:!0,args:null!==(p=null===(d=null===(u=null==n?void 0:n.compute)||void 0===u?void 0:u.descriptors)||void 0===d?void 0:d.args)&&void 0!==p?p:[]},functions:null!==(v=null===(m=null==n?void 0:n.compute)||void 0===m?void 0:m.functions)&&void 0!==v?v:[]}},j=yield Q(i,(t=>{V=t}),(()=>null),L,!1);j.root.classList.add("hit-triage-new-template-functions-input");const D=it(null==n?void 0:n.campaignFields),H=function(t){const i=[e.Property.fromOptions({name:"Name",type:e.TYPE.STRING})],n=new X(i,t?t.map((t=>({Name:t}))):void 0,{horizontalInputNames:!0});let o={};return n.onItemAdded.subscribe((t=>{o={}})),n.onAddingItemChanged.subscribe((t=>{t&&(o=t.item)})),{getFields:function(){const t=n.items.filter((t=>t.Name)).map((t=>t.Name));return o.Name&&""!==o.Name&&t.push(o.Name),t},fieldsDiv:n.root}}(null==n?void 0:n.stages),M=o.divV([o.divV([O,_]),o.divV([k,F]),D.fieldsDiv]),R=o.h2("Stages");o.tooltip.bind(R,'Define Stages for designed molecules. For example, "Design", "Synthesis", "Test", etc.');const U=o.h2("Compute");o.tooltip.bind(U,'Define functions to be calculated for each molecule. For example, "Descriptors", "Descriptors:Descriptors", etc.');const $=o.div([o.h2("Details"),M,R,H.fieldsDiv,U,j.root,o.h2("Submit"),N.root],"ui-form"),q=o.buttonsInput([]);$.appendChild(q);const Y=null!==(y=null===(g=q.getElementsByClassName("ui-input-editor"))||void 0===g?void 0:g[0])&&void 0!==y?y:q,W=new Promise((t=>{const e=o.button(A,(()=>t()));Y.appendChild(e)})),G=new Promise((e=>{const i=o.bigButton(w,(()=>function(){var i,n,o,a,s;return bt(this,void 0,void 0,(function*(){if(B(),P(),j.okProxy(),C||!O.value||""===O.value)return void t.shell.error("Template name is empty or already exists");if(T||!k.value||""===k.value)return void t.shell.error("Template key is empty or already exists");const r=N.value?E[N.value]:void 0,l=Object.assign({name:O.value,key:k.value,campaignFields:D.getFields(),stages:H.getFields(),compute:{descriptors:{enabled:!!(null===(i=null==V?void 0:V.descriptors)||void 0===i?void 0:i.length),args:null!==(n=null==V?void 0:V.descriptors)&&void 0!==n?n:[]},functions:Object.entries(null!==(o=null==V?void 0:V.externals)&&void 0!==o?o:{}).map((([t,e])=>{const i=t.split(":");return{name:i[1],package:i[0],args:e}})),scripts:Object.entries(null!==(a=null==V?void 0:V.scripts)&&void 0!==a?a:{}).filter((([t,e])=>t.startsWith(h)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}})),queries:Object.entries(null!==(s=null==V?void 0:V.queries)&&void 0!==s?s:{}).filter((([t,e])=>t.startsWith(f)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}}))}},r?{submit:{fName:r.name,package:r.package.name}}:{});var c;c=l,Bt.files.writeAsText(`Hit Design/templates/${c.name}.json`,JSON.stringify(c)),t.shell.info("Template created successfully"),e(l)}))}()));Y.appendChild(i)}));return{root:$,template:G,cancelPromise:W}}))}var Ct=function(t,e,i,n){return new(i||(i=Promise))((function(o,a){function s(t){try{l(n.next(t))}catch(t){a(t)}}function r(t){try{l(n.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(s,r)}l((n=n.apply(t,e||[])).next())}))};class At extends ot{constructor(e){super(e),this.name="Hit Design",t.shell.windows.showHelp=!0,t.shell.windows.help.showHelp(Bt.webRoot+"README_HD.md"),this.checkCampaign().then((t=>{this.app.campaign=t,this.init()}))}onActivated(){t.shell.windows.showHelp=!0,t.shell.windows.help.showHelp(Bt.webRoot+"README_HD.md")}init(t){return Ct(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0);try{const e=o.h1(T),i=o.h1(x,{style:{marginLeft:"10px"}}),n=rt.appHeader({iconPath:Bt.webRoot+"/images/icons/hit-design-icon.png",learnMoreUrl:"https://github.com/datagrok-ai/public/blob/master/packages/HitTriage/README_HD.md",description:"-  Configure your own workflow using the template editor\n-  Sketch molecules in the molecular spreadsheet\n-  Annotate and share ideas with the team\n-  Calculate different molecular properties\n-  Save campaigns and continue from where you left off\n-  Submit final selection to the function of your choice"}),a=o.div(),s=o.divH([]),r=o.div([s,a],"ui-form"),l=yield this.getCampaignsTable();z()(this.root).empty(),this.root.appendChild(o.div([o.divV([n,e],{style:{marginLeft:"10px"}}),l,i,r])),yield this.startNewCampaign(a,s,t),this.app.resetBaseUrl()}finally{o.setUpdateIndicator(this.root,!1)}}))}startNewCampaign(t,e,i){var n;return Ct(this,void 0,void 0,(function*(){const a=(yield Bt.files.list("Hit Design/templates")).filter((t=>t.name.endsWith(".json"))).map((t=>t.name.slice(0,-5)));i&&!a.includes(i.name)&&a.push(i.name);let s=null;const r=()=>Ct(this,void 0,void 0,(function*(){const e=l.value,n=i&&i.name===e?i:JSON.parse(yield Bt.files.readAsText("Hit Design/templates/"+e+".json"));s=n;const o=yield this.getNewCampaignAccordeon(n);z()(t).empty(),t.appendChild(o)})),l=o.choiceInput("Template",null!==(n=null==i?void 0:i.name)&&void 0!==n?n:a[0],a,(()=>Ct(this,void 0,void 0,(function*(){yield r()}))));l.root.style.width="100%";const c=o.icons.add((()=>{this.createNewTemplate()}),y),u=o.icons.copy((()=>{s&&this.createNewTemplate(s)}),"Clone template");c.style.color="#2083d5",l.addOptions(u),l.addOptions(c),yield r(),z()(e).empty(),e.appendChild(l.root)}))}checkCampaign(t){var e;return Ct(this,void 0,void 0,(function*(){const i=location.search,n=new URLSearchParams(i);if(!n.has(s)&&!t)return;const o=null!=t?t:n.get(s);if(!(yield Bt.files.exists(`Hit Design/campaigns/${o}/campaign.json`)))return;const a=JSON.parse(yield Bt.files.readAsText(`Hit Design/campaigns/${o}/campaign.json`));a&&(this.app.campaign=a);const r=null!==(e=a.template)&&void 0!==e?e:JSON.parse(yield Bt.files.readAsText(`Hit Design/templates/${a.templateName}.json`));return yield this.app.setTemplate(r,o),t&&R(s,t),a.template=r,a}))}getCampaignsTable(){return Ct(this,void 0,void 0,(function*(){const t=yield W("Hit Design",this.deletedCampaigns),e=o.table(Object.values(t),(t=>[o.link(t.name,(()=>this.setCampaign(t.name)),"",""),t.createDate,t.rowCount,t.status,o.icons.delete((()=>Ct(this,void 0,void 0,(function*(){o.dialog("Delete campaign").add(o.divText(`Are you sure you want to delete campaign ${t.name}?`)).onOK((()=>Ct(this,void 0,void 0,(function*(){yield this.deleteCampaign("Hit Design",t.name),this.deletedCampaigns.push(t.name),yield this.init()})))).show()}))),"Delete campaign")]),["Name","Created","Molecules","Status",""]);return e.style.color="var(--grey-5)",e.style.marginLeft="24px",e}))}setCampaign(t){return Ct(this,void 0,void 0,(function*(){const e=yield this.checkCampaign(t);this.app.campaign=e}))}getNewCampaignAccordeon(i){return Ct(this,void 0,void 0,(function*(){const{root:n,promise:a,cancelPromise:s}=function(i){var n,a;const s=e.DataFrame.create(1),r=s.columns.addNew(d,e.TYPE.STRING);r.semType=e.SEMTYPE.MOLECULE,r.setTag(e.TAGS.UNITS,e.UNITS.Molecule.SMILES),r.set(0,null),(null===(n=null==i?void 0:i.stages)||void 0===n?void 0:n.length)>0&&s.columns.addNew(u,e.TYPE.STRING).set(0,i.stages[0]);const l=s.columns.addNew(p,e.TYPE.STRING);l.set(0,ft(l));const c=i.campaignFields.map((t=>t.type===e.SEMTYPE.MOLECULE?Object.assign(Object.assign({},t),{type:"String",semtype:e.SEMTYPE.MOLECULE}):t)).map((t=>e.Property.fromOptions(Object.assign({name:t.name,type:G[t.type],nullable:!t.required},t.semtype?{semType:t.semtype}:{})))),m={},h=o.input.form(m,c);h.classList.remove("ui-form");const f=o.div([...(null===(a=i.campaignFields)||void 0===a||a.length,[]),h]),v=o.buttonsInput([]);return f.appendChild(v),{promise:new Promise((e=>{const n=o.bigButton(b,(()=>{for(const e of i.campaignFields)if(e.required&&(!m[e.name]||""===m[e.name]))return void t.shell.error(`Field '${e.name}' is required`);e({df:s,campaignProps:m})}));v.appendChild(n)})),root:f,cancelPromise:new Promise((t=>{o.button(A,(()=>t()))}))}}(i);return a.then((t=>Ct(this,void 0,void 0,(function*(){this.app.dataFrame=t.df,yield this.app.setTemplate(i),this.app.campaignProps=t.campaignProps,this.app.saveCampaign(void 0,!1)})))),s.then((()=>{this.init()})),n}))}createNewTemplate(i){return Ct(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0);try{const n=yield wt(this.app,i),a=new e.ViewBase,s=t.shell.v;a.name="New Template",a.root.appendChild(n.root),a.parentCall=this.app.parentCall,t.shell.addView(a),a.path=new URL(this.app.baseUrl).pathname+"/new-template";const{sub:r}=U(a,"Hit Design",y,(()=>Ct(this,void 0,void 0,(function*(){t.shell.v=s,a.close()}))));n.template.then((e=>Ct(this,void 0,void 0,(function*(){yield this.init(e),a.close(),$(a),t.shell.v=s,r.unsubscribe()})))),n.cancelPromise.then((()=>Ct(this,void 0,void 0,(function*(){r.unsubscribe(),a.close(),t.shell.v=s}))))}finally{o.setUpdateIndicator(this.root,!1)}}))}}class Tt extends ot{constructor(t){super(t),this.name="Submit"}render(){return o.empty(this.root),o.divV([o.h1("Summary"),o.div([o.tableFromMap(this.app.getSummary())])])}onActivated(){this.render()}submit(){var i,n,o,a,s;return n=this,o=void 0,s=function*(){const n=null===(i=this.app.template)||void 0===i?void 0:i.submit;if(!n)return;const o=e.Func.find({name:n.fName,package:n.package})[0];if(!o)return void t.shell.error(`Function ${n.fName} not found.`);const a=e.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield o.apply({df:a,molecules:this.app.molColName}),this.app.campaign&&(this.app.campaign.status="Submitted"),this.app.saveCampaign("Submitted"),t.shell.info("Submitted successfully.")},new((a=void 0)||(a=Promise))((function(t,e){function i(t){try{l(s.next(t))}catch(t){e(t)}}function r(t){try{l(s.throw(t))}catch(t){e(t)}}function l(e){var n;e.done?t(e.value):(n=e.value,n instanceof a?n:new a((function(t){t(n)}))).then(i,r)}l((s=s.apply(n,o||[])).next())}))}}var xt=i(143),It={};It.styleTagTransform=L(),It.setAttributes=O(),It.insert=F().bind(null,"head"),It.domAPI=N(),It.insertStyleElement=k(),S()(xt.Z,It),xt.Z&&xt.Z.locals&&xt.Z.locals;class St extends ot{constructor(t){super(t),this.v=null,this.name="Progress Tracker"}render(){return i=this,n=void 0,s=function*(){return new Promise((i=>{var n,a,s;this.app.dataFrame.columns.names().forEach((t=>{t.startsWith("~")&&this.app.dataFrame.columns.remove(t)}));const r=null===(n=this.app.campaign)||void 0===n?void 0:n.tilesViewerFormSketch;let l=null;if(r&&r.length>0)try{l=JSON.parse(r)}catch(t){console.error("Failed to parse sketch state string",t)}let c=!0;if(!this.v||this.v.isDetached){c=!1,this.v=e.Viewer.fromType(e.VIEWER.TILE_VIEWER,this.app.dataFrame,Object.assign({lanesColumnName:u,lanes:null!==(s=null===(a=this.app.template)||void 0===a?void 0:a.stages)&&void 0!==s?s:[]},l?{sketchState:l}:{}));const t=this.v.getOptions();l&&(t.look.sketchState=l),this.v.setOptions(t),this.v.copyViewersLook(this.v)}c?i():(o.empty(this.root),this.root.appendChild(this.v.root),this.v.root.style.height="100%",this.v.root.style.width="100%",setTimeout((()=>{var e,n,a;null===(n=null===(e=this.v)||void 0===e?void 0:e.view)||void 0===n||n._onAdded();const s=null===(a=t.shell.v)||void 0===a?void 0:a.getRibbonPanels();if(s){if(q(s))return void i();const e=o.bigButton("Design view",(()=>{const e=t.shell.view(this.app.designViewName);e&&(t.shell.v=e)})),n=o.bigButton("Submit",(()=>{var t;const e=null===(t=this.app._submitView)||void 0===t?void 0:t.render();if(e){const t=o.dialog("Submit");t.add(e),t.addButton("Save",(()=>{this.app.saveCampaign(),t.close()})),t.addButton("Submit",(()=>{var e;null===(e=this.app._submitView)||void 0===e||e.submit(),t.close()})),t.show()}}));n.classList.add("hit-design-submit-button"),s.push([e,n]),t.shell.v.setRibbonPanels(s)}i()}),5))}))},new((a=void 0)||(a=Promise))((function(t,e){function o(t){try{l(s.next(t))}catch(t){e(t)}}function r(t){try{l(s.throw(t))}catch(t){e(t)}}function l(e){var i;e.done?t(e.value):(i=e.value,i instanceof a?i:new a((function(t){t(i)}))).then(o,r)}l((s=s.apply(i,n||[])).next())}));var i,n,a,s}onActivated(){this.render()}get sketchStateString(){if(!this.v)return null;const t=this.v.props.sketchState;return t&&"object"==typeof t?JSON.stringify(t):null}}var Et=function(t,e,i,n){return new(i||(i=Promise))((function(o,a){function s(t){try{l(n.next(t))}catch(t){a(t)}}function r(t){try{l(n.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(s,r)}l((n=n.apply(t,e||[])).next())}))};class Nt extends pt{constructor(i){super(i),this._tilesViewTab=null,this._designViewName="Design",this._filePath="System.AppData/HitTriage/Hit Design/campaigns",this._molColName=d,this.campaignProps={},this.processedValues=[],this._extraStageColsCount=0,this._infoView=new At(this),this.multiView=new e.MultiView({viewFactories:{[this._infoView.name]:()=>this._infoView}}),this.multiView.tabs.onTabChanged.subscribe((t=>{this.multiView.currentView instanceof ot&&this.multiView.currentView.onActivated()})),this.multiView.parentCall=i,this.mainView=this.multiView,t.events.onCurrentViewChanged.subscribe((()=>Et(this,void 0,void 0,(function*(){var e,i,n,o,s,r,l,c,u;try{if((null===(e=t.shell.v)||void 0===e?void 0:e.name)===this.currentDesignViewId||(null===(i=t.shell.v)||void 0===i?void 0:i.name)===this.currentTilesViewId){if(t.shell.windows.showHelp=!1,this.setBaseUrl(),R(a,null!==(s=null!==(n=this._campaignId)&&void 0!==n?n:null===(o=this._campaign)||void 0===o?void 0:o.name)&&void 0!==s?s:""),this.currentTilesViewId&&(null===(r=t.shell.v)||void 0===r?void 0:r.name)===this.currentTilesViewId)yield null===(l=this._tilesView)||void 0===l?void 0:l.render();else{const t=null===(c=this._tilesView)||void 0===c?void 0:c.sketchStateString;t&&""!=t&&this.campaign&&(this.campaign.tilesViewerFormSketch=t)}const{sub:e}=U(t.shell.v,"Hit Design",null===(u=t.shell.v)||void 0===u?void 0:u.name,(()=>{var i,n;t.shell.v=this.mainView,null===(i=this._tilesView)||void 0===i||i.close(),null===(n=this._designView)||void 0===n||n.close(),this._infoView.init(),e.unsubscribe()}))}}catch(t){console.error(t)}}))))}get infoView(){return this._infoView}setTemplate(i,n){var o,r,l,c,u,p,m,h,f,v,g,y,b;return Et(this,void 0,void 0,(function*(){if(n){const e="System.AppData/HitTriage/Hit Design/campaigns";this._filePath=null!==(l=null===(r=this.campaign)||void 0===r?void 0:r.savePath)&&void 0!==l?l:`${e}/${n}/enriched_table.csv`,this.dataFrame=yield t.dapi.files.readCsv(this._filePath),(null===(c=this._campaign)||void 0===c?void 0:c.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach((([t,e])=>{const i=this.dataFrame.columns.byName(t);i&&e&&(i.semType=e)})),(null===(u=this._campaign)||void 0===u?void 0:u.columnTypes)&&Object.entries(this._campaign.columnTypes).forEach((([t,e])=>{const i=this.dataFrame.columns.byName(t);if(i&&i.type!==e)try{this.dataFrame.changeColumnType(t,e)}catch(t){console.error(t)}}))}else(null===(o=this._designView)||void 0===o?void 0:o.dataFrame)&&t.shell.closeTable(this._designView.dataFrame),this._designView=void 0,n=yield this.getNewCampaignName("Hit Design/campaigns",i.key),R(s,n),this._filePath=`System.AppData/HitTriage/Hit Design/campaigns/${n}/enriched_table.csv`;if(!this.dataFrame)return void console.error("DataFrame is empty");yield this.dataFrame.meta.detectSemanticTypes(),this._molColName=null!==(m=null===(p=this.dataFrame.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===p?void 0:p.name)&&void 0!==m?m:d,this._dfName=null!==(h=(b=this.dataFrame).name)&&void 0!==h?h:b.name=n,this._campaignId=n,this.template=i,null!==(f=this._submitView)&&void 0!==f||(this._submitView=new Tt(this)),t.shell.windows.showHelp=!1,this._extraStageColsCount=this.dataFrame.rowCount-this.dataFrame.filter.trueCount;const w=this.designView;this.currentDesignViewId=w.name,this.setBaseUrl(),R(a,null!==(y=null!==(v=this._campaignId)&&void 0!==v?v:null===(g=this._campaign)||void 0===g?void 0:g.name)&&void 0!==y?y:""),this.campaign&&(this.campaign.template=i)}))}get campaignId(){return this._campaignId}get designView(){return this._designView=this.getDesignView()}get designViewName(){return this._designViewName}get molColName(){var t,i,n,o;return null!==(t=this._molColName)&&void 0!==t?t:this._molColName=null!==(o=null===(n=null===(i=this.dataFrame)||void 0===i?void 0:i.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===n?void 0:n.name)&&void 0!==o?o:d}get campaign(){return this._campaign}set campaign(t){this._campaign=t}getDesignView(){var i,n,a,s,r,l;const c=[],m=null===(i=this.dataFrame.col(this.molColName))||void 0===i?void 0:i.toList().every((t=>!t&&""===t)),v=t.shell.addTableView(this.dataFrame);this._designViewName=null!==(a=null===(n=this.campaign)||void 0===n?void 0:n.name)&&void 0!==a?a:this._designViewName,v.name=this._designViewName,this.processedValues=this.dataFrame.getCol(this.molColName).toList(),setTimeout((()=>Et(this,void 0,void 0,(function*(){var i,n;if(v._onAdded(),yield new Promise((t=>setTimeout(t,1e3))),null===(i=this._campaign)||void 0===i?void 0:i.layout)try{const t=e.ViewLayout.fromViewState(this._campaign.layout);v.loadLayout(t)}catch(t){console.error(t)}m&&t.functions.call("Chem:editMoleculeCell",{cell:v.grid.cell(this._molColName,0)}),c.push(this.dataFrame.onRowsAdded.subscribe((()=>{var e,i;try{if(this.processedValues=this.dataFrame.getCol(this.molColName).toList(),(null===(e=this.template.stages)||void 0===e?void 0:e.length)>0)for(let t=0;t<this.dataFrame.rowCount;t++){const e=this.dataFrame.col(u).get(t);e&&""!==e&&!(null===(i=this.dataFrame.col(u))||void 0===i?void 0:i.isNone(t))||this.dataFrame.set(u,t,this.template.stages[0])}let n=null;for(let t=0;t<this.dataFrame.rowCount;t++){const e=v.grid.cell(this.molColName,t);e&&(""!==e.cell.value&&null!==e.cell.value||(n=e))}n&&t.functions.call("Chem:editMoleculeCell",{cell:n})}catch(t){console.error(t)}}))),this.dataFrame&&c.push(null===(n=this.dataFrame)||void 0===n?void 0:n.onRowsRemoved.subscribe((()=>{try{this.processedValues=this.dataFrame.getCol(this.molColName).toList()}catch(t){console.error(t)}}))),c.push(t.events.onContextMenu.subscribe((i=>{var n,o,a,s,r;try{const t=null===(n=null==i?void 0:i.args)||void 0===n?void 0:n.context;if(!t)return;if((null==t?void 0:t.type)!==e.VIEWER.GRID)return;if(!t.tableView||t.tableView.id!==v.id)return;if((null===(s=null===(a=null===(o=null==i?void 0:i.args)||void 0===o?void 0:o.item)||void 0===a?void 0:a.tableColumn)||void 0===s?void 0:s.name)!==this.molColName)return;const l=null===(r=null==i?void 0:i.args)||void 0===r?void 0:r.menu;if(!l)return;l.item("Add new row",(()=>{this.dataFrame.rows.addNew(null,!0)})),l.item("Duplicate molecule",(()=>{var t,e,n,o;try{this.dataFrame.rows.addNew(null,!0);let a=null;for(let t=0;t<this.dataFrame.rowCount;t++){const e=v.grid.cell(this.molColName,t);e&&(""!==e.cell.value&&null!==e.cell.value||(a=e))}a&&(a.cell.value=null!==(o=null===(n=null===(e=null===(t=null==i?void 0:i.args)||void 0===t?void 0:t.item)||void 0===e?void 0:e.cell)||void 0===n?void 0:n.value)&&void 0!==o?o:"")}catch(t){console.error(t)}}))}catch(e){t.log.error(e)}}))),c.push(v.grid.onCellValueEdited.subscribe((i=>Et(this,void 0,void 0,(function*(){var n,o,a,s;try{if((null===(n=i.tableColumn)||void 0===n?void 0:n.name)===u)return void(yield this.saveCampaign(void 0,!1));if((null===(o=i.tableColumn)||void 0===o?void 0:o.name)!==this.molColName)return;const r=i.cell.value,l=i.tableRowIndex;(null===(a=this.dataFrame.col(p))||void 0===a?void 0:a.get(l))&&""!==(null===(s=this.dataFrame.col(p))||void 0===s?void 0:s.get(l))||this.dataFrame.col(p).set(l,ft(this.dataFrame.col(p)),!1);const c=this.template.compute;if(!r||""===r)return;const m=yield function(i,n,o,a=[],s=[]){return ht(this,void 0,void 0,(function*(){const r=e.TaskBarProgressIndicator.create("Calculating ..."),l=t.chem.convert(i,t.chem.Notation.Unknown,t.chem.Notation.Smiles),c=e.Column.fromStrings(d,[l]),u=e.DataFrame.fromColumns([c]);u.name="HD Single cell values",yield u.meta.detectSemanticTypes(),n.length&&(yield t.chem.descriptors(u,c.name,n));for(const t of o)try{const i=t.args,n=e.Func.find({package:t.package,name:t.name});if(!n.length||!n[0]){console.warn(`Function ${t.name} from package ${t.package} is not found`);continue}const o=n[0],a=o.inputs[0].name,s=o.inputs[1].name;yield o.apply(Object.assign(Object.assign({},i),{[a]:u,[s]:c.name}))}catch(t){console.error(t);continue}for(const e of a){const i=e.args;try{const n=yield t.dapi.scripts.find(e.id);if(n){const t=n.inputs[0].name,e=n.inputs[1].name,o=yield n.apply(Object.assign(Object.assign({},i),{[t]:u,[e]:c.name}));if(o&&o.rowCount===u.rowCount&&"python"===n.language)for(const t of o.columns)t.name=u.columns.getUnusedName(t.name),u.columns.add(t)}}catch(t){console.error(t)}}for(const e of s){const i=e.args;try{const n=yield t.dapi.queries.find(e.id);if(n){const t=n.inputs[0].name,e=[l],o=yield n.apply(Object.assign(Object.assign({},i),{[t]:e}));if(!o||0===o.rowCount)continue;yield Y(u,d,o)}}catch(t){console.error(t)}}return r.close(),u}))}(r,c.descriptors.args,c.functions,c.scripts,c.queries);for(const t of m.columns.toList())t.name!==d&&(this.dataFrame.columns.contains(t.name)||(this.dataFrame.columns.addNew(t.name,t.type).semType=t.semType),this.dataFrame.col(t.name).set(l,t.get(0),!1));this.dataFrame.fireValuesChanged(),this.saveCampaign(void 0,!1)}catch(t){console.error(t)}})))));const o=t.events.onViewRemoved.subscribe((t=>{t.id===v.id&&(c.forEach((t=>t.unsubscribe())),o.unsubscribe())}))}))),300);const g=null==v?void 0:v.getRibbonPanels();if(g&&!q(g)){const e=()=>Et(this,void 0,void 0,(function*(){var t;Q(this,(t=>Et(this,void 0,void 0,(function*(){var e,i,n,a,s,r,l,c,u,d;const p=this.template.compute.descriptors.args,m=this.template.compute.functions,g=null!==(e=this.template.compute.scripts)&&void 0!==e?e:[],y=null!==(i=this.template.compute.queries)&&void 0!==i?i:[],b=t.descriptors,w={descriptors:{enabled:!!(null===(n=null==t?void 0:t.descriptors)||void 0===n?void 0:n.length),args:null!==(a=null==t?void 0:t.descriptors)&&void 0!==a?a:[]},functions:Object.entries(null!==(s=null==t?void 0:t.externals)&&void 0!==s?s:{}).map((([t,e])=>{const i=t.split(":");return{name:i[1],package:i[0],args:e}})),scripts:Object.entries(null!==(r=null==t?void 0:t.scripts)&&void 0!==r?r:{}).filter((([t,e])=>t.startsWith(h)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}})),queries:Object.entries(null!==(l=null==t?void 0:t.queries)&&void 0!==l?l:{}).filter((([t,e])=>t.startsWith(f)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}}))};this.template.compute=w,this.campaign.template=this.template;const C=b.filter((t=>!p.includes(t))),A={};Object.entries(null!==(c=null==t?void 0:t.externals)&&void 0!==c?c:{}).filter((([t,e])=>{const i=m.find((e=>`${e.package}:${e.name}`===t));return!i||!Object.entries(e).every((([t,e])=>i.args[t]===e))})).forEach((([t,e])=>{A[t]=e}));const T={};Object.entries(null!==(u=null==t?void 0:t.scripts)&&void 0!==u?u:{}).filter((([t,e])=>{const i=g.find((e=>`HTScript:${e.name}:${e.id}`===t));return!i||!Object.entries(e).every((([t,e])=>i.args[t]===e))})).forEach((([t,e])=>{T[t]=e}));const x={};Object.entries(null!==(d=null==t?void 0:t.queries)&&void 0!==d?d:{}).filter((([t,e])=>{const i=y.find((e=>`HTQuery:${e.name}:${e.id}`===t));return!i||!Object.entries(e).every((([t,e])=>i.args[t]===e))})).forEach((([t,e])=>{x[t]=e})),o.setUpdateIndicator(v.grid.root,!0);try{yield vt({descriptors:C,externals:A,scripts:T,queries:x},this.dataFrame,this.molColName),this.dataFrame.fireValuesChanged()}finally{o.setUpdateIndicator(v.grid.root,!1),this.saveCampaign(void 0,!1)}}))),(()=>null),null===(t=this.campaign)||void 0===t?void 0:t.template,!0)})),i=o.iconFA("wrench",e,"Calculate additional properties"),n=o.icons.add((()=>{var t;null===(t=this.dataFrame)||void 0===t||t.rows.addNew(null,!0)}),"Add new row"),a=o.bigButton("Progress tracker",(()=>{var e;this.currentTilesViewId&&t.shell.view(this.currentTilesViewId)&&(null===(e=t.shell.view(this.currentTilesViewId))||void 0===e||e.close()),this._tilesView=new St(this),this._tilesView.parentCall=this.parentCall,this._tilesViewTab=t.shell.addView(this._tilesView),this.currentTilesViewId=this._tilesViewTab.name,this._tilesView.onActivated(),t.shell.v=t.shell.view(this.currentTilesViewId)})),c=o.bigButton("Submit",(()=>{var t;const e=null===(t=this._submitView)||void 0===t?void 0:t.render();if(e){const t=o.dialog("Submit");t.add(e),t.addButton("Save",(()=>{this.saveCampaign(),t.close()})),t.addButton("Submit",(()=>{var e;null===(e=this._submitView)||void 0===e||e.submit(),t.close()})),t.show()}}));c.classList.add("hit-design-submit-button");const u=[c];null!==(l=null===(r=null===(s=this.template)||void 0===s?void 0:s.stages)||void 0===r?void 0:r.length)&&void 0!==l&&l&&u.unshift(a),this.campaign&&this.template&&!this.campaign.template&&(this.campaign.template=this.template),u.unshift(i),u.unshift(n),g.push(u),v.setRibbonPanels(g)}return v.parentCall=this.parentCall,v}getSummary(){var i,n,a,s;const r=()=>{var t,e;const i=this._filePath.indexOf(null!==(t=this.campaignId)&&void 0!==t?t:null===(e=this._campaign)||void 0===e?void 0:e.name);return-1===i?this._filePath:this._filePath.substring(0,i-1)},l=Object.assign({},null!==(n=null===(i=this.campaign)||void 0===i?void 0:i.campaignFields)&&void 0!==n?n:this.campaignProps);return this.template&&this.template.campaignFields&&Object.entries(l).forEach((([i,n])=>{const o=this.template.campaignFields.find((t=>t.name===i));o&&"Date"===o.type&&n?"Invalid Date"!==new Date(n).toString()?l[i]=new Date(n).toLocaleDateString():n.date?l[i]=new Date(n.date).toLocaleDateString():l[i]=n:o&&o.type===e.SEMTYPE.MOLECULE&&n&&(l[i]=t.chem.drawMolecule(n))})),Object.assign(Object.assign({Template:null!==(s=null===(a=this.template)||void 0===a?void 0:a.name)&&void 0!==s?s:"Molecules","File path":(()=>{const e=o.icons.edit((()=>{const i=r(),s=o.stringInput("Path",i),l=s.root.getElementsByTagName("label").item(0);l&&l.remove(),s.root.style.width="100%";const c=o.button("Save",(()=>Et(this,void 0,void 0,(function*(){const i=yield function(){return Et(this,void 0,void 0,(function*(){const e=s.value;return e&&""!==e.trim()?!!(yield t.dapi.files.exists(e))||(t.shell.error("Given folder does not exist"),!1):(t.shell.error("Path can not be empty"),!1)}))}();if(!i)return;const l=s.value;l.endsWith("/")?this._filePath=`${l}${this.campaignId}/enriched_table.csv`:this._filePath=`${l}/${this.campaignId}/enriched_table.csv`,this._campaign&&(this._campaign.savePath=this._filePath),yield this.saveCampaign(void 0,!0),o.empty(a);const c=r();n=o.link(c,(()=>{var t,e,i;return this.download(this.dataFrame,null!==(i=null!==(t=this.campaignId)&&void 0!==t?t:null===(e=this._campaign)||void 0===e?void 0:e.name)&&void 0!==i?i:"Molecules")}),C),a.appendChild(n),a.appendChild(e)})))),u=o.button("Cancel",(()=>{o.empty(a),a.appendChild(n),a.appendChild(e)}));o.empty(a),s.addOptions(u),s.addOptions(c),a.appendChild(s.root)}),"Edit file path");e.style.marginLeft="5px";const i=r();let n=o.link(i,(()=>{var t,e,i;return this.download(this.dataFrame,null!==(i=null!==(t=this.campaignId)&&void 0!==t?t:null===(e=this._campaign)||void 0===e?void 0:e.name)&&void 0!==i?i:"Molecules")}),C);const a=o.divH([n,e],{style:{alignItems:"center"}});return a})()},l),{"Number of molecules":(this.dataFrame.rowCount-this._extraStageColsCount).toString(),"Enrichment methods":[this.template.compute.descriptors.enabled?"descriptors":"",...this.template.compute.functions.map((t=>t.name))].filter((t=>t&&""!==t.trim())).join(", ")})}saveCampaign(i,n=!0){var o,a,s,r,l,c,u,d,m,h,f,v;return Et(this,void 0,void 0,(function*(){const g=this.campaignId,y=this.template.name,b=this.dataFrame,w=g,C={};b.columns.toList().forEach((t=>C[t.name]=t.semType));const A={};b.columns.toList().forEach((t=>A[t.name]=t.type));const T=null!==(r=null!==(a=null===(o=this._tilesView)||void 0===o?void 0:o.sketchStateString)&&void 0!==a?a:null===(s=this.campaign)||void 0===s?void 0:s.tilesViewerFormSketch)&&void 0!==r?r:void 0,x={name:w,templateName:y,status:null!==(c=null!=i?i:null===(l=this.campaign)||void 0===l?void 0:l.status)&&void 0!==c?c:"In Progress",createDate:null!==(d=null===(u=this.campaign)||void 0===u?void 0:u.createDate)&&void 0!==d?d:M(new Date),campaignFields:null!==(h=null===(m=this.campaign)||void 0===m?void 0:m.campaignFields)&&void 0!==h?h:this.campaignProps,columnSemTypes:C,rowCount:null!==(v=null===(f=b.col(p))||void 0===f?void 0:f.toList().filter((t=>"StageDefiningRow"!==t)).length)&&void 0!==v?v:0,filteredRowCount:b.filter.trueCount,savePath:this._filePath,columnTypes:A,tilesViewerFormSketch:T};console.log(this._filePath);const I=e.DataFrame.fromColumns(b.columns.toList().filter((t=>!t.name.startsWith("~")))).toCsv();yield t.dapi.files.writeAsText(this._filePath,I);const S=this._designView.saveLayout();return S?x.layout=S.viewState:t.shell.warning("Layout cound not be saved"),x.template=this.template,yield Bt.files.writeAsText(`Hit Design/campaigns/${g}/campaign.json`,JSON.stringify(x)),n&&t.shell.info("Campaign saved successfully."),this.campaign=x,x}))}}class _t extends e.GridCellRenderer{get name(){return"customGasteigerPNG"}get cellType(){return"customGasteigerPNG"}get defaultHeight(){return 200}get defaultWidth(){return 200}render(t,e,i,n,o,a,s){if(a.gridRow<0||!a.cell.value)return;const r=a.cell.value,l=new Image(n-2,o-2);l.src="data:image/png;base64,"+r,l.onload=function(){t.drawImage(l,e+2,i+2,n-2,o-2)}}}var Ft=function(t,e,i,n){return new(i||(i=Promise))((function(o,a){function s(t){try{l(n.next(t))}catch(t){a(t)}}function r(t){try{l(n.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(s,r)}l((n=n.apply(t,e||[])).next())}))};const Bt=new e.Package;function Ot(){return Ft(this,void 0,void 0,(function*(){const e=t.functions.getCurrentCall();return new yt(e).multiView}))}function Pt(){return Ft(this,void 0,void 0,(function*(){const e=t.functions.getCurrentCall();return new Nt(e).multiView}))}function kt(){return Ft(this,void 0,void 0,(function*(){const e=t.data.demo.molecules(100);return e.name="100 Molecules",e}))}function Vt(){return Ft(this,void 0,void 0,(function*(){const e=t.data.demo.molecules(5e3);return e.name="5000 Molecules",e}))}function Lt(e){return Ft(this,void 0,void 0,(function*(){const i=t.data.demo.molecules(e);return i.name="Variable Molecules number",i}))}function jt(e,i){return Ft(this,void 0,void 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Triage",t.shell.windows.showHelp=!0,t.shell.windows.help.showHelp(this.readmePath),this.checkCampaign().then((t=>{this.app.campaign=t,this.init()}))}onActivated(){t.shell.windows.showHelp=!0,t.shell.windows.help.showHelp(this.readmePath)}init(t){return ct(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0);try{const e=o.h1(T),i=o.h1(x,{style:{marginLeft:"10px"}}),n=lt.appHeader({iconPath:Pt.webRoot+"/images/icons/hit-triage-icon.png",learnMoreUrl:"https://github.com/datagrok-ai/public/blob/master/packages/HitTriage/README_HT.md",description:"- Configure your own workflow using the template editor.\n- Calculate different molecular properties.\n- Filter molecules using different criteria.\n- Submit processed dataframe to the function of your choice.\n- Save campaigns and continue any time from where you left off.\n "}),a=o.div(),s=o.div([],{classes:"ui-form"}),r=yield this.getCampaignsTable();yield this.startNewCampaign(a,s,t),z()(this.root).empty(),this.root.appendChild(o.div([o.divV([n,e],{style:{marginLeft:"10px"}}),r,i,s,a])),this.app.resetBaseUrl()}catch(t){throw o.setUpdateIndicator(this.root,!1),t}finally{o.setUpdateIndicator(this.root,!1)}}))}startNewCampaign(t,e,i){var n;return ct(this,void 0,void 0,(function*(){const a=(yield Pt.files.list("Hit Triage/templates")).map((t=>t.name.slice(0,-5)));i&&!a.includes(i.name)&&a.push(i.name);const s=()=>ct(this,void 0,void 0,(function*(){const e=r.value,n=i&&i.name===e?i:JSON.parse(yield Pt.files.readAsText("Hit Triage/templates/"+e+".json")),o=yield this.getNewCampaignAccordeon(n,t);z()(t).empty(),t.className="ui-form",t.appendChild(o)})),r=o.choiceInput("Template",null!==(n=null==i?void 0:i.name)&&void 0!==n?n:a[0],a,(()=>ct(this,void 0,void 0,(function*(){yield s()})))),l=o.icons.add((()=>ct(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0),yield this.createNewTemplate(),o.setUpdateIndicator(this.root,!1)}))),y);r.addOptions(l),yield s(),z()(e).empty(),e.appendChild(r.root)}))}checkCampaign(t){return ct(this,void 0,void 0,(function*(){const e=location.search,i=new URLSearchParams(e);if(!i.has(a)&&!t)return;const n=null!=t?t:i.get(a);if(!(yield Pt.files.exists(`Hit Triage/campaigns/${n}/campaign.json`)))return;const o=JSON.parse(yield Pt.files.readAsText(`Hit Triage/campaigns/${n}/campaign.json`)),s=JSON.parse(yield Pt.files.readAsText(`Hit Triage/templates/${o.templateName}.json`));return this.app.setTemplate(s,o.filters,n,o.ingest),t&&R(a,t),o}))}getCampaignsTable(){return ct(this,void 0,void 0,(function*(){const t=yield W("Hit Triage",this.deletedCampaigns),e=Object.values(t).map((t=>({name:t.name,createDate:t.createDate,rowCount:t.rowCount,filtered:t.filteredRowCount,status:t.status}))),i=o.table(e,(t=>[o.link(t.name,(()=>this.setCampaign(t.name)),"",""),t.createDate,t.rowCount,t.filtered,t.status,o.icons.delete((()=>ct(this,void 0,void 0,(function*(){o.dialog("Delete campaign").add(o.divText(`Are you sure you want to delete campaign ${t.name}?`)).onOK((()=>ct(this,void 0,void 0,(function*(){yield this.deleteCampaign("Hit Triage",t.name),this.deletedCampaigns.push(t.name),yield this.init()})))).show()}))),"Delete campaign")]),["Name","Created","Total","Selected","Status",""]);return i.style.color="var(--grey-5)",i}))}setCampaign(t){return ct(this,void 0,void 0,(function*(){const e=yield this.checkCampaign(t);this.app.campaign=e}))}getNewCampaignAccordeon(i,n){return ct(this,void 0,void 0,(function*(){o.setUpdateIndicator(n,!0);const{root:a,promise:s,cancelPromise:l}=yield function(i,n){var a,s;return G(this,void 0,void 0,(function*(){const l=o.divText("",{style:{color:"red"}});let c=null;const u=()=>G(this,void 0,void 0,(function*(){try{if(c=d.value,!c)return;if(yield c.meta.detectSemanticTypes(),!c.columns.bySemType(e.SEMTYPE.MOLECULE))return void(l.innerText="No molecules column found");l.innerText=""}catch(t){l.innerText="Error parsing file"}})),d=o.tableInput("Dataframe",null,void 0,u);yield u();const p=o.div([d,l]);0===Object.keys(n).length&&(e.Func.find({tags:[r]}).forEach((t=>{var e;n[null!==(e=t.friendlyName)&&void 0!==e?e:t.name]=t})),(yield t.dapi.queries.include("params,connection").filter("#HitTriageDataSource").list()).forEach((t=>{var e;n[null!==(e=t.friendlyName)&&void 0!==e?e:t.name]=t})));let m=null;const h=()=>G(this,void 0,void 0,(function*(){const t=n[v.value];m=t.prepare();const e=yield m.getEditor();e.classList.remove("ui-form"),f.innerHTML="",f.appendChild(e)})),f=o.div([]),v=o.choiceInput(g,null!==(a=i.queryFunctionName)&&void 0!==a?a:Object.keys(n)[0],Object.keys(n),h);yield h(),i.queryFunctionName&&(null===(s=v.root.getElementsByTagName("select").item(0))||void 0===s||s.setAttribute("disabled","true"));const y=o.div([v,f]);y.style.display="none";const b=o.div([p,y]),C=i.campaignFields.map((t=>t.type===e.SEMTYPE.MOLECULE?Object.assign(Object.assign({},t),{type:"String",semtype:e.SEMTYPE.MOLECULE}):t)).map((t=>e.Property.fromOptions(Object.assign({name:t.name,type:J[t.type],nullable:!t.required},t.semtype?{semType:t.semtype}:{})))),T={},x=C.length?o.input.form(T,C):o.div();x.classList.remove("ui-form"),"File"===i.dataSourceType?(p.style.display="inherit",y.style.display="none"):(p.style.display="none",y.style.display="inherit");const S=o.div([b,...C.length?[x]:[]]),I=o.buttonsInput([]);return S.appendChild(I),{promise:new Promise((e=>{const a=()=>G(this,void 0,void 0,(function*(){if("File"===i.dataSourceType){if(!c)return void t.shell.error("No file selected");const i=c;i.name=c.name,e({df:i,type:"File",campaignProps:T})}else{const i=n[v.value];if(!i)return void t.shell.error("No function selected");const o={};Object.entries(m.inputs).forEach((([t,e])=>{o[t]=e}));const a=yield i.apply(o);e({df:a,type:"Query",campaignProps:T})}})),s=o.bigButton(w,(()=>a()));I.appendChild(s)})),root:S,cancelPromise:new Promise((t=>{o.button(A,(()=>t()))}))}}))}(i,this.dataSourceFunctionsMap);return o.setUpdateIndicator(n,!1),s.then((t=>ct(this,void 0,void 0,(function*(){this.app.dataFrame=t.df,this.app._fileInputType=t.type,yield this.app.setTemplate(i),this.app.campaignProps=t.campaignProps,yield this.app.saveCampaign(void 0,!1),i.layoutViewState&&this.app.campaign&&(this.app.campaign.layout=i.layoutViewState)})))),l.then((()=>{this.init()})),a}))}createNewTemplate(){return ct(this,void 0,void 0,(function*(){const i=yield it(this.app,this.dataSourceFunctionsMap),n=new e.ViewBase,o=t.shell.v;n.name="New Template",n.root.appendChild(i.root),n.parentCall=this.app.parentCall,t.shell.addView(n),n.path=new URL(this.app.baseUrl).pathname+"/new-template",n.parentView=o;const{sub:a}=U(t.shell.v,"Hit Triage",y,(()=>{t.shell.v=o,n.close()}));i.template.then((e=>ct(this,void 0,void 0,(function*(){yield this.init(e),n.close(),$(n),t.shell.v=o,a.unsubscribe()})))),i.cancelPromise.then((()=>{a.unsubscribe(),n.close(),t.shell.v=o}))}))}}class dt extends at{constructor(t){super(t),this.name="Submit"}render(){return o.empty(this.root),o.divV([o.h1("Summary"),o.div([o.tableFromMap(this.app.getSummary())])])}onActivated(){this.render()}submit(){var i,n,o,a,s;return n=this,o=void 0,s=function*(){const n=null===(i=this.app.template)||void 0===i?void 0:i.submit;if(!n)return;const o=e.Func.find({name:n.fName,package:n.package})[0];if(!o)return void t.shell.error(`Function ${n.fName} not found.`);const a=e.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield o.apply({df:a,molecules:this.app.molColName}),this.app.campaign&&(this.app.campaign.status="Submitted"),this.app.saveCampaign("Submitted"),t.shell.info("Submitted successfully.")},new((a=void 0)||(a=Promise))((function(t,e){function i(t){try{l(s.next(t))}catch(t){e(t)}}function r(t){try{l(s.throw(t))}catch(t){e(t)}}function l(e){var n;e.done?t(e.value):(n=e.value,n instanceof a?n:new a((function(t){t(n)}))).then(i,r)}l((s=s.apply(n,o||[])).next())}))}}var pt=function(t,e,i,n){return new(i||(i=Promise))((function(o,a){function s(t){try{l(n.next(t))}catch(t){a(t)}}function r(t){try{l(n.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(s,r)}l((n=n.apply(t,e||[])).next())}))};class mt{constructor(i){this.parentCall=i,this.isJoining=!1,this.resetBaseUrl(),this.computeFunctions=new Promise((i=>pt(this,void 0,void 0,(function*(){const n=e.Func.find({tags:["HitTriageFunction"]}).filter((t=>"function-package"===t.type)),o=yield t.dapi.scripts.include("params").filter("#HitTriageFunction").list(),a=yield t.dapi.queries.include("params,connection").filter("#HitTriageFunction").list();i({functions:n,scripts:o,queries:a})}))))}resetBaseUrl(){const t=window.location.href,e=new URL(t);this.baseUrl=e.origin+e.pathname}getFilterType(t){const i=this.dataFrame.col(t);return(null==i?void 0:i.semType)===e.SEMTYPE.MOLECULE?e.FILTER_TYPE.SUBSTRUCTURE:(null==i?void 0:i.type)===e.COLUMN_TYPE.BOOL?e.FILTER_TYPE.BOOL_COLUMNS:(null==i?void 0:i.type)===e.COLUMN_TYPE.STRING?e.FILTER_TYPE.CATEGORICAL:e.FILTER_TYPE.HISTOGRAM}download(t,i,n=!1){const o=document.createElement("a"),a=e.DataFrame.fromColumns(t.columns.toList().filter((t=>!t.name.startsWith("~")))).toCsv({filteredRowsOnly:n});o.setAttribute("href","data:text/plain;charset=utf-8,"+encodeURIComponent(a)),o.setAttribute("download",i+".csv"),o.click()}getNewCampaignName(t,e){return pt(this,void 0,void 0,(function*(){const i=(yield Pt.files.list(t)).map((t=>t.name)).filter((t=>t.startsWith(e)));if(0===i.length)return e+"-1";const n=i.map((t=>t.split("-")[1])).filter(Boolean).map((t=>parseInt(t,10))).sort();return e+"-"+(n[n.length-1]+1).toString()}))}setBaseUrl(){const t=document.title;if(history.replaceState){const e={Title:t,Url:this.baseUrl};history.replaceState(e,e.Title,e.Url)}}unionDataframes(t,i,n){var o,a,s,r,l;const c=null===(a=null===(o=t.col(n))||void 0===o?void 0:o.toList())||void 0===a?void 0:a.filter((t=>!!t)).map((t=>e.chem.convert(t,e.chem.Notation.Unknown,e.chem.Notation.Smiles))),u=null===(r=null===(s=i.col(n))||void 0===s?void 0:s.toList())||void 0===r?void 0:r.filter((t=>!!t)).map((t=>e.chem.convert(t,e.chem.Notation.Unknown,e.chem.Notation.Smiles)));if(!c||!u)throw new Error("Molecule column not found");this.isJoining=!0;try{for(const e of t.columns)i.columns.contains(e.name)||i.columns.addNew(e.name,e.type);for(let e=0;e<c.length;e++)if(!u.includes(c[e])){i.rows.addNew(null,!0);for(const n of t.columns){const t=n.get(e);null===(l=i.col(n.name))||void 0===l||l.set(i.rowCount-1,t,!1)}}}finally{setTimeout((()=>{this.isJoining=!1}),500)}return i}}var ht=function(t,e,i,n){return new(i||(i=Promise))((function(o,a){function s(t){try{l(n.next(t))}catch(t){a(t)}}function r(t){try{l(n.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(s,r)}l((n=n.apply(t,e||[])).next())}))},ft=function(t,e,i,n){return new(i||(i=Promise))((function(o,a){function s(t){try{l(n.next(t))}catch(t){a(t)}}function r(t){try{l(n.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(s,r)}l((n=n.apply(t,e||[])).next())}))};function vt(t){let e=0;if(t.length>1)for(const i of t.toList()){if(!i||!i.startsWith(m[0])||i.length!==m.length)continue;const t=parseInt(i.substring(1));isNaN(t)||(e=Math.max(t,e))}return`V${"".concat(...new Array(m.length-1-(e+1).toString().length).fill("0"))}${e+1}`}function gt(i,n,o){var a,s;return ft(this,void 0,void 0,(function*(){const r=e.TaskBarProgressIndicator.create("Calculating ..."),l=n.col(o);if(!l)throw new Error("There is no molecule column in dataframe");for(let e=0;e<l.length;e++){if(l.isNone(e))continue;const i=l.get(e);if(!i)continue;const n=t.chem.convert(i,t.chem.Notation.Unknown,t.chem.Notation.Smiles);l.set(e,n,!1)}i.descriptors&&i.descriptors.length>0&&(yield t.chem.descriptors(n,o,i.descriptors));for(const t of Object.keys(i.externals))try{const a=i.externals[t],s=e.Func.find({package:t.split(":")[0],name:t.split(":")[1]})[0],r=s.inputs[0].name,l=s.inputs[1].name;a&&(yield s.apply(Object.assign(Object.assign({},a),{[r]:n,[l]:o})))}catch(t){console.error(t)}for(const e of Object.keys(null!==(a=i.scripts)&&void 0!==a?a:{})){const a=i.scripts[e];if(a){const i=e.split(":")[2];if(!i)continue;try{const e=yield t.dapi.scripts.find(i);if(!e)continue;const s=e.inputs[0].name,r=e.inputs[1].name,l=yield e.apply(Object.assign(Object.assign({},a),{[s]:n,[r]:o}));if(l&&l.rowCount===n.rowCount&&"python"===e.language)for(const t of l.columns)t.name=n.columns.getUnusedName(t.name),n.columns.add(t)}catch(t){console.error(t)}}}for(const e of Object.keys(null!==(s=i.queries)&&void 0!==s?s:{})){const a=i.queries[e];if(a){const i=e.split(":")[2];if(!i)continue;try{const e=yield t.dapi.queries.find(i);if(!e)continue;const s=e.inputs[0].name,r=n.col(o).toList(),l=yield e.apply(Object.assign(Object.assign({},a),{[s]:r}));l&&(yield Y(n,o,l))}catch(t){console.error(t)}}}r.close()}))}var yt=function(t,e,i,n){return new(i||(i=Promise))((function(o,a){function s(t){try{l(n.next(t))}catch(t){a(t)}}function r(t){try{l(n.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(s,r)}l((n=n.apply(t,e||[])).next())}))};class wt extends mt{constructor(i){super(i),this._filterViewName="Hit triage | Pick",this._filterDescriptions=[],this.campaignProps={},this._pickViewPromise=null,this._infoView=new ut(this),this.multiView=new e.MultiView({viewFactories:{[this._infoView.name]:()=>this._infoView}}),this.multiView.tabs.onTabChanged.subscribe((t=>{this.multiView.currentView instanceof at&&this.multiView.currentView.onActivated()})),this.multiView.parentCall=i,t.events.onCurrentViewChanged.subscribe((()=>{var e,i,n,o;try{(null===(e=t.shell.v)||void 0===e?void 0:e.name)===this.currentPickViewId&&(t.shell.windows.showHelp=!1,this.setBaseUrl(),R(a,null!==(o=null!==(i=this._campaignId)&&void 0!==i?i:null===(n=this._campaign)||void 0===n?void 0:n.name)&&void 0!==o?o:""))}catch(t){console.error(t)}}))}get infoView(){return this._infoView}setTemplate(i,n,o,s){var r,l,c,u,d,p,m,h,f,v,g,y,w,b,C;return yt(this,void 0,void 0,(function*(){if((null===(r=this._pickView)||void 0===r?void 0:r.dataFrame)&&t.shell.closeTable(null===(l=this._pickView)||void 0===l?void 0:l.dataFrame),this._pickView=void 0,o?s&&(this._fileInputType=s.type,"File"===s.type?this.dataFrame=yield t.dapi.files.readCsv(s.query):this.dataFrame=yield t.functions.call(s.query)):(o=yield this.getNewCampaignName("Hit Triage/campaigns",i.key),R(a,o)),!this.dataFrame)return void console.error("Dataframe is empty.");if((null===(c=this._campaign)||void 0===c?void 0:c.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach((([t,e])=>{const i=this.dataFrame.columns.byName(t);i&&i.semType!==e&&(i.semType=e)})),(null===(u=this._campaign)||void 0===u?void 0:u.columnTypes)&&Object.entries(this._campaign.columnTypes).forEach((([t,e])=>{const i=this.dataFrame.columns.byName(t);if(i&&i.type!==e)try{i.convertTo(e)}catch(t){console.error(t)}})),yield this.dataFrame.meta.detectSemanticTypes(),this._molColName=null!==(p=null===(d=this.dataFrame.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===d?void 0:d.name)&&void 0!==p?p:void 0,this._dfName=null!==(m=this.dataFrame.name)&&void 0!==m?m:null==s?void 0:s.query,this.dataFrame.name=null!==(f=null!==(h=this._dfName)&&void 0!==h?h:this.dataFrame.name)&&void 0!==f?f:"Molecules",this._campaignId=o,this.template=(null===(v=this.campaign)||void 0===v?void 0:v.template)?Object.assign(Object.assign({},this.campaign.template),{dataSourceType:i.dataSourceType,queryFunctionName:i.queryFunctionName}):i,this._campaignFilters=n,!n){const t={},e={},n={};i.compute.functions.forEach((e=>{const i=`${e.package}:${e.name}`;t[i]=e.args})),null===(g=i.compute.scripts)||void 0===g||g.forEach((t=>{const i=`HTScript:${t.name}:${t.id}`;e[i]=t.args})),null===(y=i.compute.queries)||void 0===y||y.forEach((t=>{const e=`HTQuery:${t.name}:${t.id}`;n[e]=t.args})),yield gt({descriptors:i.compute.descriptors.enabled?i.compute.descriptors.args:[],externals:t,scripts:e,queries:n},this.dataFrame,this._molColName)}const A=t.shell.v,T=t.shell.addView(this.pickView);this.currentPickViewId=T.name,this._submitView=new dt(this),this.setBaseUrl(),R(a,null!==(C=null!==(w=this._campaignId)&&void 0!==w?w:null===(b=this._campaign)||void 0===b?void 0:b.name)&&void 0!==C?C:"");const x=T;setTimeout((()=>{this._pickViewPromise&&this._pickViewPromise.then((()=>{const{sub:e}=U(x,"Hit Triage","Pick",(()=>{t.shell.v=A,x.close(),e.unsubscribe()}))}))}),300),t.shell.windows.showHelp=!1}))}get filterSettings(){return this._campaignFilters}get campaignId(){return this._campaignId}get pickView(){return this._pickView=this.getFilterView()}get molColName(){var t,i,n;return null!==(t=this._molColName)&&void 0!==t?t:this._molColName=null===(n=null===(i=this.dataFrame)||void 0===i?void 0:i.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===n?void 0:n.name}get fileInputType(){return this._fileInputType}get campaign(){return this._campaign}set campaign(t){this._campaign=t}getFilterView(){let t=null;this._pickViewPromise=new Promise((e=>{t=e})),this.dataFrame.col(c)||this.dataFrame.columns.addNewBool(c).init(!1);const i=e.TableView.create(this.dataFrame,!1),n=i.getRibbonPanels(),a=o.iconFA("wrench",(()=>yt(this,void 0,void 0,(function*(){Q(this,(t=>yt(this,void 0,void 0,(function*(){var e,i,n,o,a,s,r;const l=this.template.compute.descriptors.args,c=this.template.compute.functions,u=null!==(e=this.template.compute.scripts)&&void 0!==e?e:[],d=null!==(i=this.template.compute.queries)&&void 0!==i?i:[],p=t.descriptors,m={descriptors:{enabled:!!(null===(n=null==t?void 0:t.descriptors)||void 0===n?void 0:n.length),args:null!==(o=null==t?void 0:t.descriptors)&&void 0!==o?o:[]},functions:Object.entries(null!==(a=null==t?void 0:t.externals)&&void 0!==a?a:{}).map((([t,e])=>{const i=t.split(":");return{name:i[1],package:i[0],args:e}})),scripts:Object.entries(null!==(s=null==t?void 0:t.scripts)&&void 0!==s?s:{}).filter((([t,e])=>t.startsWith(h)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}})),queries:Object.entries(null!==(r=null==t?void 0:t.queries)&&void 0!==r?r:{}).filter((([t,e])=>t.startsWith(f)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}}))};this.template.compute=m;const v=p.filter((t=>!l.includes(t))),g=m.functions.filter((t=>{if(!c.some((e=>e.name===t.name&&e.package===t.package)))return!0;const e=c.find((e=>e.name===t.name&&e.package===t.package));return!Object.entries(t.args).every((([t,i])=>e.args[t]===i))})),y=m.scripts.filter((t=>{if(!u.some((e=>e.id===t.id)))return!0;const e=u.find((e=>e.id===t.id));return!Object.entries(t.args).every((([t,i])=>e.args[t]===i))})),w=m.queries.filter((t=>{if(!d.some((e=>e.id===t.id)))return!0;const e=d.find((e=>e.id===t.id));return!Object.entries(t.args).every((([t,i])=>e.args[t]===i))})),b={};g.forEach((t=>{const e=`${t.package}:${t.name}`;b[e]=t.args}));const C={};y.forEach((t=>{const e=`HTScript:${t.name}:${t.id}`;C[e]=t.args}));const A={};w.forEach((t=>{const e=`HTQuery:${t.name}:${t.id}`;A[e]=t.args})),yield gt({descriptors:v,externals:b,scripts:C,queries:A},this.dataFrame,this._molColName),this.saveCampaign("In Progress",!1)}))),(()=>null),this.template,!0)}))),"Calculate additional properties"),s=o.bigButton("Submit",(()=>{var t;const e=null===(t=this._submitView)||void 0===t?void 0:t.render();if(e){const t=o.dialog("Submit");t.add(e),t.addButton("Save",(()=>{this.saveCampaign(),t.close()})),t.addButton("Submit",(()=>{var e;null===(e=this._submitView)||void 0===e||e.submit(),t.close()})),t.show()}}));s.classList.add("hit-design-submit-button");const r=q(n);return n.push([a,...r?[]:[s]]),i.setRibbonPanels(n),i.name=this._filterViewName,setTimeout((()=>yt(this,void 0,void 0,(function*(){var n,o,a;i._onAdded(),yield new Promise((t=>setTimeout(t,1e3)));const s=i.filters(this._campaignFilters?{filters:this._campaignFilters}:void 0),r=null!==(o=null===(n=this._campaign)||void 0===n?void 0:n.layout)&&void 0!==o?o:null===(a=this.template)||void 0===a?void 0:a.layoutViewState;if(r)try{const t=e.ViewLayout.fromViewState(r);i.loadLayout(t)}catch(t){console.error(t)}i.dataFrame.onFilterChanged.subscribe((t=>{this._filterDescriptions=Array.from(i.dataFrame.rows.filters),this._campaignFilters=s.getOptions().look.filters})),setTimeout((()=>{this._filterDescriptions=Array.from(i.dataFrame.rows.filters),this._campaignFilters=s.getOptions().look.filters}),300),t&&t()}))),300),i.parentCall=this.parentCall,i}getSummary(){var t,e,i,n,a,s,r;const l=null!==(e=null===(t=this.campaign)||void 0===t?void 0:t.campaignFields)&&void 0!==e?e:this.campaignProps;return Object.assign(Object.assign({Template:null!==(n=null===(i=this.template)||void 0===i?void 0:i.name)&&void 0!==n?n:"Molecules","File path":o.divH([o.link(null!==(a=this._dfName)&&void 0!==a?a:"-",(()=>this.download(this.dataFrame,"molecules")),C)],{style:{alignItems:"center"}})},l),{"Number of molecules":this.dataFrame.rowCount.toString(),"Enrichment methods":[this.template.compute.descriptors.enabled?"descriptors":"",...this.template.compute.functions.map((t=>t.name))].filter((t=>t&&""!==t.trim())).join(", "),Filters:this._filterDescriptions.join(", "),"Result Molecules":o.divH([o.link(null!==(r=null===(s=this.dataFrame)||void 0===s?void 0:s.filter.trueCount.toString())&&void 0!==r?r:"0",(()=>{this.download(this.dataFrame,"hits",!0)}),C)],{style:{alignItems:"center"}})})}saveCampaign(i,n=!0){var a,s,r,l,c,u;return yt(this,void 0,void 0,(function*(){const d=this.campaignId,p=this.filterSettings,m=this.template.name,h=this.dataFrame,f=`System:AppData/HitTriage/Hit Triage/campaigns/${d}/`,v=null!=d?d:yield function(t){return ht(this,void 0,void 0,(function*(){return new Promise((e=>ht(this,void 0,void 0,(function*(){const i=o.stringInput("Campaign name","");o.dialog("Save Campaign").add(o.div(i.root)).onOK((function(){i.value&&""!==i.value?e(i.value):e(t)})).show()}))))}))}(d),g={};h.columns.toList().forEach((t=>g[t.name]=t.semType));const y={};h.columns.toList().forEach((t=>y[t.name]=t.type));const w={name:v,templateName:m,filters:null!=p?p:{},ingest:{type:"File",query:`${f}enriched_table.csv`,molColName:this.molColName},status:null!==(s=null!=i?i:null===(a=this.campaign)||void 0===a?void 0:a.status)&&void 0!==s?s:"In Progress",createDate:null!==(l=null===(r=this.campaign)||void 0===r?void 0:r.createDate)&&void 0!==l?l:M(new Date),campaignFields:null!==(u=null===(c=this.campaign)||void 0===c?void 0:c.campaignFields)&&void 0!==u?u:this.campaignProps,columnSemTypes:g,rowCount:h.rowCount,filteredRowCount:h.filter.trueCount,template:this.template,columnTypes:y};this.campaign=w;const b=e.DataFrame.fromColumns(h.columns.toList().filter((t=>!t.name.startsWith("~")))).toCsv();yield Pt.files.writeAsText(`Hit Triage/campaigns/${d}/enriched_table.csv`,b);const C=this._pickView.saveLayout();C?w.layout=C.viewState:t.shell.warning("Layout cound not be saved"),yield Pt.files.writeAsText(`Hit Triage/campaigns/${d}/campaign.json`,JSON.stringify(w)),n&&t.shell.info("Campaign saved successfully.")}))}}var bt=function(t,e,i,n){return new(i||(i=Promise))((function(o,a){function s(t){try{l(n.next(t))}catch(t){a(t)}}function r(t){try{l(n.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(s,r)}l((n=n.apply(t,e||[])).next())}))};function Ct(i,n){var a,s,r,c,u,d,p,m,v,g,y;return bt(this,void 0,void 0,(function*(){const w=yield Pt.files.list("Hit Design/templates");let C=!1,T=!1;const x=w.map((t=>t.name.slice(0,-5))),S=[];for(const t of w)try{const e=JSON.parse(yield Pt.files.readAsText(t));S.push(e.key)}catch(t){console.error(t)}const I=e.Func.find({tags:[l]}),N={};I.forEach((t=>{var e;N[null!==(e=t.friendlyName)&&void 0!==e?e:t.name]=t}));const E=o.choiceInput("Submit function",null,[null,...Object.keys(N)]);E.nullable=!0,E.value=null!==(s=null===(a=null==n?void 0:n.submit)||void 0===a?void 0:a.fName)&&void 0!==s?s:null,E.setTooltip("Select function to be called upon submitting");const _=o.divText("Template name is empty or already exists",{classes:"hit-triage-error-div"}),F=o.divText("Template key is empty or already exists",{classes:"hit-triage-error-div"}),B=tt();function O(){var t,e,i,n;if(""===P.value||x.includes(null!==(e=null===(t=P.value)||void 0===t?void 0:t.trim())&&void 0!==e?e:"")){const t=null!==(i=P.input.offsetLeft)&&void 0!==i?i:0,e=null!==(n=P.input.offsetWidth)&&void 0!==n?n:0;_.style.marginLeft=`${t}px`,_.style.width=`${e}px`,_.style.opacity="100%",_.style.borderTop="1px solid red",C=!0}else _.style.borderTop="none",_.style.opacity="0%",C=!1}const P=o.stringInput("Name",null!==(r=null==n?void 0:n.name)&&void 0!==r?r:"",O);function k(){var t,e,i,n;if(""===V.value||S.includes(null!==(e=null===(t=V.value)||void 0===t?void 0:t.trim())&&void 0!==e?e:"")){const t=null!==(i=V.input.offsetLeft)&&void 0!==i?i:0,e=null!==(n=V.input.offsetWidth)&&void 0!==n?n:0;F.style.marginLeft=`${t}px`,F.style.width=`${e}px`,F.style.borderTop="1px solid red",F.style.opacity="100%",T=!0}else F.style.opacity="0%",F.style.borderTop="none",T=!1}const V=o.stringInput("Key",null!==(c=null==n?void 0:n.key)&&void 0!==c?c:"",k);V.setTooltip("Template key used for campaign prefix"),P.setTooltip("Template name"),P.root.style.borderBottom="none",V.root.style.borderBottom="none",_.style.opacity="0%",F.style.opacity="0%";let L=null;const j={compute:{descriptors:{enabled:!0,args:null!==(p=null===(d=null===(u=null==n?void 0:n.compute)||void 0===u?void 0:u.descriptors)||void 0===d?void 0:d.args)&&void 0!==p?p:[]},functions:null!==(v=null===(m=null==n?void 0:n.compute)||void 0===m?void 0:m.functions)&&void 0!==v?v:[]}},D=yield Q(i,(t=>{L=t}),(()=>null),j,!1);D.root.classList.add("hit-triage-new-template-functions-input");const H=nt(null==n?void 0:n.campaignFields),M=function(t){const i=[e.Property.fromOptions({name:"Name",type:e.TYPE.STRING})],n=new X(i,t?t.map((t=>({Name:t}))):void 0,{horizontalInputNames:!0});let o={};return n.onItemAdded.subscribe((t=>{o={}})),n.onAddingItemChanged.subscribe((t=>{t&&(o=t.item)})),{getFields:function(){const t=n.items.filter((t=>t.Name)).map((t=>t.Name));return o.Name&&""!==o.Name&&t.push(o.Name),t},fieldsDiv:n.root}}(null==n?void 0:n.stages),R=o.divV([o.divV([P,_]),o.divV([V,F]),B.dataFileInput,H.fieldsDiv]),U=o.h2("Stages");o.tooltip.bind(U,'Define Stages for designed molecules. For example, "Design", "Synthesis", "Test", etc.');const $=o.h2("Compute");o.tooltip.bind($,'Define functions to be calculated for each molecule. For example, "Descriptors", "Descriptors:Descriptors", etc.');const q=o.div([o.h2("Details"),R,U,M.fieldsDiv,$,D.root,o.h2("Submit"),E.root],"ui-form"),Y=o.buttonsInput([]);q.appendChild(Y);const W=null!==(y=null===(g=Y.getElementsByClassName("ui-input-editor"))||void 0===g?void 0:g[0])&&void 0!==y?y:Y,J=new Promise((t=>{const e=o.button(A,(()=>t()));W.appendChild(e)})),G=new Promise((e=>{const i=o.bigButton(b,(()=>function(){var i,n,o,a,s,r;return bt(this,void 0,void 0,(function*(){if(O(),k(),D.okProxy(),C||!P.value||""===P.value)return void t.shell.error("Template name is empty or already exists");if(T||!V.value||""===V.value)return void t.shell.error("Template key is empty or already exists");const l=E.value?N[E.value]:void 0,c=Object.assign({name:P.value,key:V.value,campaignFields:H.getFields(),stages:M.getFields(),layoutViewState:null!==(i=B.getLayoutViewState())&&void 0!==i?i:void 0,compute:{descriptors:{enabled:!!(null===(n=null==L?void 0:L.descriptors)||void 0===n?void 0:n.length),args:null!==(o=null==L?void 0:L.descriptors)&&void 0!==o?o:[]},functions:Object.entries(null!==(a=null==L?void 0:L.externals)&&void 0!==a?a:{}).map((([t,e])=>{const i=t.split(":");return{name:i[1],package:i[0],args:e}})),scripts:Object.entries(null!==(s=null==L?void 0:L.scripts)&&void 0!==s?s:{}).filter((([t,e])=>t.startsWith(h)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}})),queries:Object.entries(null!==(r=null==L?void 0:L.queries)&&void 0!==r?r:{}).filter((([t,e])=>t.startsWith(f)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}}))}},l?{submit:{fName:l.name,package:l.package.name}}:{});var u;u=c,Pt.files.writeAsText(`Hit Design/templates/${u.name}.json`,JSON.stringify(u)),t.shell.info("Template created successfully"),e(c)}))}()));W.appendChild(i)}));return{root:q,template:G,cancelPromise:J}}))}var At=function(t,e,i,n){return new(i||(i=Promise))((function(o,a){function s(t){try{l(n.next(t))}catch(t){a(t)}}function r(t){try{l(n.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(s,r)}l((n=n.apply(t,e||[])).next())}))};class Tt extends at{constructor(e){super(e),this.name="Hit Design",t.shell.windows.showHelp=!0,t.shell.windows.help.showHelp(Pt.webRoot+"README_HD.md"),this.checkCampaign().then((t=>{this.app.campaign=t,this.init()}))}onActivated(){t.shell.windows.showHelp=!0,t.shell.windows.help.showHelp(Pt.webRoot+"README_HD.md")}init(t){return At(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0);try{const e=o.h1(T),i=o.h1(x,{style:{marginLeft:"10px"}}),n=lt.appHeader({iconPath:Pt.webRoot+"/images/icons/hit-design-icon.png",learnMoreUrl:"https://github.com/datagrok-ai/public/blob/master/packages/HitTriage/README_HD.md",description:"-  Configure your own workflow using the template editor\n-  Sketch molecules in the molecular spreadsheet\n-  Annotate and share ideas with the team\n-  Calculate different molecular properties\n-  Save campaigns and continue from where you left off\n-  Submit final selection to the function of your choice"}),a=o.div(),s=o.divH([]),r=o.div([s,a],"ui-form"),l=yield this.getCampaignsTable();z()(this.root).empty(),this.root.appendChild(o.div([o.divV([n,e],{style:{marginLeft:"10px"}}),l,i,r])),yield this.startNewCampaign(a,s,t),this.app.resetBaseUrl()}finally{o.setUpdateIndicator(this.root,!1)}}))}startNewCampaign(t,e,i){var n;return At(this,void 0,void 0,(function*(){const a=(yield Pt.files.list("Hit Design/templates")).filter((t=>t.name.endsWith(".json"))).map((t=>t.name.slice(0,-5)));i&&!a.includes(i.name)&&a.push(i.name);let s=null;const r=()=>At(this,void 0,void 0,(function*(){const e=l.value,n=i&&i.name===e?i:JSON.parse(yield Pt.files.readAsText("Hit Design/templates/"+e+".json"));s=n;const o=yield this.getNewCampaignAccordeon(n);z()(t).empty(),t.appendChild(o)})),l=o.choiceInput("Template",null!==(n=null==i?void 0:i.name)&&void 0!==n?n:a[0],a,(()=>At(this,void 0,void 0,(function*(){yield r()}))));l.root.style.width="100%";const c=o.icons.add((()=>{this.createNewTemplate()}),y),u=o.icons.copy((()=>{s&&this.createNewTemplate(s)}),"Clone template");c.style.color="#2083d5",l.addOptions(u),l.addOptions(c),yield r(),z()(e).empty(),e.appendChild(l.root)}))}checkCampaign(t){var e;return At(this,void 0,void 0,(function*(){const i=location.search,n=new URLSearchParams(i);if(!n.has(s)&&!t)return;const o=null!=t?t:n.get(s);if(!(yield Pt.files.exists(`Hit Design/campaigns/${o}/campaign.json`)))return;const a=JSON.parse(yield Pt.files.readAsText(`Hit Design/campaigns/${o}/campaign.json`));a&&(this.app.campaign=a);const r=null!==(e=a.template)&&void 0!==e?e:JSON.parse(yield Pt.files.readAsText(`Hit Design/templates/${a.templateName}.json`));return yield this.app.setTemplate(r,o),t&&R(s,t),a.template=r,a}))}getCampaignsTable(){return At(this,void 0,void 0,(function*(){const t=yield W("Hit Design",this.deletedCampaigns),e=o.table(Object.values(t),(t=>[o.link(t.name,(()=>this.setCampaign(t.name)),"",""),t.createDate,t.rowCount,t.status,o.icons.delete((()=>At(this,void 0,void 0,(function*(){o.dialog("Delete campaign").add(o.divText(`Are you sure you want to delete campaign ${t.name}?`)).onOK((()=>At(this,void 0,void 0,(function*(){yield this.deleteCampaign("Hit Design",t.name),this.deletedCampaigns.push(t.name),yield this.init()})))).show()}))),"Delete campaign")]),["Name","Created","Molecules","Status",""]);return e.style.color="var(--grey-5)",e.style.marginLeft="24px",e}))}setCampaign(t){return At(this,void 0,void 0,(function*(){const e=yield this.checkCampaign(t);this.app.campaign=e}))}getNewCampaignAccordeon(i){return At(this,void 0,void 0,(function*(){const{root:n,promise:a,cancelPromise:s}=function(i){var n,a;const s=e.DataFrame.create(1),r=s.columns.addNew(d,e.TYPE.STRING);r.semType=e.SEMTYPE.MOLECULE,r.setTag(e.TAGS.UNITS,e.UNITS.Molecule.SMILES),r.set(0,null),(null===(n=null==i?void 0:i.stages)||void 0===n?void 0:n.length)>0&&s.columns.addNew(u,e.TYPE.STRING).set(0,i.stages[0]);const l=s.columns.addNew(p,e.TYPE.STRING);l.set(0,vt(l));const c=i.campaignFields.map((t=>t.type===e.SEMTYPE.MOLECULE?Object.assign(Object.assign({},t),{type:"String",semtype:e.SEMTYPE.MOLECULE}):t)).map((t=>e.Property.fromOptions(Object.assign({name:t.name,type:J[t.type],nullable:!t.required},t.semtype?{semType:t.semtype}:{})))),m={},h=o.input.form(m,c);h.classList.remove("ui-form");const f=o.div([...(null===(a=i.campaignFields)||void 0===a||a.length,[]),h]),v=o.buttonsInput([]);return f.appendChild(v),{promise:new Promise((e=>{const n=o.bigButton(w,(()=>{for(const e of i.campaignFields)if(e.required&&(!m[e.name]||""===m[e.name]))return void t.shell.error(`Field '${e.name}' is required`);e({df:s,campaignProps:m})}));v.appendChild(n)})),root:f,cancelPromise:new Promise((t=>{o.button(A,(()=>t()))}))}}(i);return a.then((t=>At(this,void 0,void 0,(function*(){this.app.dataFrame=t.df,yield this.app.setTemplate(i),this.app.campaignProps=t.campaignProps,yield this.app.saveCampaign(void 0,!1),i.layoutViewState&&this.app.campaign&&(this.app.campaign.layout=i.layoutViewState)})))),s.then((()=>{this.init()})),n}))}createNewTemplate(i){return At(this,void 0,void 0,(function*(){o.setUpdateIndicator(this.root,!0);try{const n=yield Ct(this.app,i),a=new e.ViewBase,s=t.shell.v;a.name="New Template",a.root.appendChild(n.root),a.parentCall=this.app.parentCall,t.shell.addView(a),a.path=new URL(this.app.baseUrl).pathname+"/new-template";const{sub:r}=U(a,"Hit Design",y,(()=>At(this,void 0,void 0,(function*(){t.shell.v=s,a.close()}))));n.template.then((e=>At(this,void 0,void 0,(function*(){yield this.init(e),a.close(),$(a),t.shell.v=s,r.unsubscribe()})))),n.cancelPromise.then((()=>At(this,void 0,void 0,(function*(){r.unsubscribe(),a.close(),t.shell.v=s}))))}finally{o.setUpdateIndicator(this.root,!1)}}))}}class xt extends at{constructor(t){super(t),this.name="Submit"}render(){return o.empty(this.root),o.divV([o.h1("Summary"),o.div([o.tableFromMap(this.app.getSummary())])])}onActivated(){this.render()}submit(){var i,n,o,a,s;return n=this,o=void 0,s=function*(){const n=null===(i=this.app.template)||void 0===i?void 0:i.submit;if(!n)return;const o=e.Func.find({name:n.fName,package:n.package})[0];if(!o)return void t.shell.error(`Function ${n.fName} not found.`);const a=e.DataFrame.fromCsv(this.app.dataFrame.toCsv({filteredRowsOnly:!0}));yield o.apply({df:a,molecules:this.app.molColName}),this.app.campaign&&(this.app.campaign.status="Submitted"),this.app.saveCampaign("Submitted"),t.shell.info("Submitted successfully.")},new((a=void 0)||(a=Promise))((function(t,e){function i(t){try{l(s.next(t))}catch(t){e(t)}}function r(t){try{l(s.throw(t))}catch(t){e(t)}}function l(e){var n;e.done?t(e.value):(n=e.value,n instanceof a?n:new a((function(t){t(n)}))).then(i,r)}l((s=s.apply(n,o||[])).next())}))}}var St=i(143),It={};It.styleTagTransform=L(),It.setAttributes=O(),It.insert=F().bind(null,"head"),It.domAPI=E(),It.insertStyleElement=k(),I()(St.Z,It),St.Z&&St.Z.locals&&St.Z.locals;class Nt extends at{constructor(t){super(t),this.v=null,this.name="Progress Tracker"}render(){return i=this,n=void 0,s=function*(){return new Promise((i=>{var n,a,s,r,l,c,d,p;this.app.dataFrame.columns.names().forEach((t=>{t.startsWith("~")&&this.app.dataFrame.columns.remove(t)}));const m=null===(n=this.app.campaign)||void 0===n?void 0:n.tilesViewerFormSketch;let h=null;if(m&&m.length>0)try{h=JSON.parse(m)}catch(t){console.error("Failed to parse sketch state string",t)}let f=!0;if(!this.v||this.v.isDetached){f=!1,h&&h.elementStates&&(null!==(a=h.elementStates.length)&&void 0!==a?a:0)>0&&(h.elementStates=h.elementStates.filter((t=>{var e;return(null===(e=null==t?void 0:t.viewerSettings)||void 0===e?void 0:e.column)&&this.app.dataFrame.col(t.viewerSettings.column)}))),this.v=e.Viewer.fromType(e.VIEWER.TILE_VIEWER,this.app.dataFrame,Object.assign({lanesColumnName:u,lanes:null!==(r=null===(s=this.app.template)||void 0===s?void 0:s.stages)&&void 0!==r?r:[]},(null!==(c=null===(l=null==h?void 0:h.elementStates)||void 0===l?void 0:l.length)&&void 0!==c?c:0)>0?{sketchState:h}:{}));const t=this.v.getOptions();t.look.sketchState=(null!==(p=null===(d=null==h?void 0:h.elementStates)||void 0===d?void 0:d.length)&&void 0!==p?p:0)>0?h:null,this.v.setOptions(t),this.v.copyViewersLook(this.v)}f?i():(o.empty(this.root),this.root.appendChild(this.v.root),this.v.root.style.height="100%",this.v.root.style.width="100%",setTimeout((()=>{var e,n,a;null===(n=null===(e=this.v)||void 0===e?void 0:e.view)||void 0===n||n._onAdded();const s=null===(a=t.shell.v)||void 0===a?void 0:a.getRibbonPanels();if(s){if(q(s))return void i();const e=o.bigButton("Design view",(()=>{const e=t.shell.view(this.app.designViewName);e&&(t.shell.v=e)})),n=o.bigButton("Submit",(()=>{var t;const e=null===(t=this.app._submitView)||void 0===t?void 0:t.render();if(e){const t=o.dialog("Submit");t.add(e),t.addButton("Save",(()=>{this.app.saveCampaign(),t.close()})),t.addButton("Submit",(()=>{var e;null===(e=this.app._submitView)||void 0===e||e.submit(),t.close()})),t.show()}}));n.classList.add("hit-design-submit-button"),s.push([e,n]),t.shell.v.setRibbonPanels(s)}i()}),5))}))},new((a=void 0)||(a=Promise))((function(t,e){function o(t){try{l(s.next(t))}catch(t){e(t)}}function r(t){try{l(s.throw(t))}catch(t){e(t)}}function l(e){var i;e.done?t(e.value):(i=e.value,i instanceof a?i:new a((function(t){t(i)}))).then(o,r)}l((s=s.apply(i,n||[])).next())}));var i,n,a,s}onActivated(){this.render()}get sketchStateString(){if(!this.v)return null;const t=this.v.props.sketchState;return t&&"object"==typeof t?JSON.stringify(t):null}}const Et=rxjs.operators;var _t=function(t,e,i,n){return new(i||(i=Promise))((function(o,a){function s(t){try{l(n.next(t))}catch(t){a(t)}}function r(t){try{l(n.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(s,r)}l((n=n.apply(t,e||[])).next())}))};class Ft extends mt{constructor(i){super(i),this._tilesViewTab=null,this._designViewName="Design",this._filePath="System.AppData/HitTriage/Hit Design/campaigns",this._molColName=d,this.campaignProps={},this.processedValues=[],this._extraStageColsCount=0,this._infoView=new Tt(this),this.multiView=new e.MultiView({viewFactories:{[this._infoView.name]:()=>this._infoView}}),this.multiView.tabs.onTabChanged.subscribe((t=>{this.multiView.currentView instanceof at&&this.multiView.currentView.onActivated()})),this.multiView.parentCall=i,this.mainView=this.multiView,t.events.onCurrentViewChanged.subscribe((()=>_t(this,void 0,void 0,(function*(){var e,i,n,o,s,r,l,c,u;try{if((null===(e=t.shell.v)||void 0===e?void 0:e.name)===this.currentDesignViewId||(null===(i=t.shell.v)||void 0===i?void 0:i.name)===this.currentTilesViewId){if(t.shell.windows.showHelp=!1,this.setBaseUrl(),R(a,null!==(s=null!==(n=this._campaignId)&&void 0!==n?n:null===(o=this._campaign)||void 0===o?void 0:o.name)&&void 0!==s?s:""),this.currentTilesViewId&&(null===(r=t.shell.v)||void 0===r?void 0:r.name)===this.currentTilesViewId)yield null===(l=this._tilesView)||void 0===l?void 0:l.render();else{const t=null===(c=this._tilesView)||void 0===c?void 0:c.sketchStateString;t&&""!=t&&this.campaign&&(this.campaign.tilesViewerFormSketch=t)}const{sub:e}=U(t.shell.v,"Hit Design",null===(u=t.shell.v)||void 0===u?void 0:u.name,(()=>{var i,n;t.shell.v=this.mainView,null===(i=this._tilesView)||void 0===i||i.close(),null===(n=this._designView)||void 0===n||n.close(),this._infoView.init(),e.unsubscribe()}))}}catch(t){console.error(t)}}))))}get infoView(){return this._infoView}get version(){var t,e;return null!==(e=null===(t=this._campaign)||void 0===t?void 0:t.version)&&void 0!==e?e:0}setTemplate(i,n){var o,r,l,c,u,p,m,h,f,v,g,y,w;return _t(this,void 0,void 0,(function*(){if(n){const e="System.AppData/HitTriage/Hit Design/campaigns";this._filePath=null!==(l=null===(r=this.campaign)||void 0===r?void 0:r.savePath)&&void 0!==l?l:`${e}/${n}/enriched_table.csv`,this.dataFrame=yield t.dapi.files.readCsv(this._filePath),(null===(c=this._campaign)||void 0===c?void 0:c.columnSemTypes)&&Object.entries(this._campaign.columnSemTypes).forEach((([t,e])=>{const i=this.dataFrame.columns.byName(t);i&&e&&(i.semType=e)})),(null===(u=this._campaign)||void 0===u?void 0:u.columnTypes)&&Object.entries(this._campaign.columnTypes).forEach((([t,e])=>{const i=this.dataFrame.columns.byName(t);if(i&&i.type!==e)try{this.dataFrame.changeColumnType(t,e)}catch(t){console.error(t)}}))}else(null===(o=this._designView)||void 0===o?void 0:o.dataFrame)&&t.shell.closeTable(this._designView.dataFrame),this._designView=void 0,n=yield this.getNewCampaignName("Hit Design/campaigns",i.key),R(s,n),this._filePath=`System.AppData/HitTriage/Hit Design/campaigns/${n}/enriched_table.csv`;if(!this.dataFrame)return void console.error("DataFrame is empty");yield this.dataFrame.meta.detectSemanticTypes(),this._molColName=null!==(m=null===(p=this.dataFrame.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===p?void 0:p.name)&&void 0!==m?m:d,this._dfName=null!==(h=(w=this.dataFrame).name)&&void 0!==h?h:w.name=n,this._campaignId=n,this.template=i,null!==(f=this._submitView)&&void 0!==f||(this._submitView=new xt(this)),t.shell.windows.showHelp=!1,this._extraStageColsCount=this.dataFrame.rowCount-this.dataFrame.filter.trueCount;const b=this.designView;this.currentDesignViewId=b.name,this.setBaseUrl(),R(a,null!==(y=null!==(v=this._campaignId)&&void 0!==v?v:null===(g=this._campaign)||void 0===g?void 0:g.name)&&void 0!==y?y:""),this.campaign&&(this.campaign.template=i)}))}get campaignId(){return this._campaignId}get designView(){return this._designView=this.getDesignView()}get designViewName(){return this._designViewName}get molColName(){var t,i,n,o;return null!==(t=this._molColName)&&void 0!==t?t:this._molColName=null!==(o=null===(n=null===(i=this.dataFrame)||void 0===i?void 0:i.columns.bySemType(e.SEMTYPE.MOLECULE))||void 0===n?void 0:n.name)&&void 0!==o?o:d}get campaign(){return this._campaign}set campaign(t){this._campaign=t}getDesignView(){var i,n,a,s,r,l;const c=[],m=null===(i=this.dataFrame.col(this.molColName))||void 0===i?void 0:i.toList().every((t=>!t&&""===t)),v=t.shell.addTableView(this.dataFrame);this._designViewName=null!==(a=null===(n=this.campaign)||void 0===n?void 0:n.name)&&void 0!==a?a:this._designViewName,v.name=this._designViewName,this.processedValues=this.dataFrame.getCol(this.molColName).toList(),setTimeout((()=>_t(this,void 0,void 0,(function*(){var i,n,o,a;v._onAdded(),yield new Promise((t=>setTimeout(t,1e3)));const s=null!==(n=null===(i=this._campaign)||void 0===i?void 0:i.layout)&&void 0!==n?n:null===(o=this.template)||void 0===o?void 0:o.layoutViewState;if(s)try{const t=e.ViewLayout.fromViewState(s);v.loadLayout(t)}catch(t){console.error(t)}m&&t.functions.call("Chem:editMoleculeCell",{cell:v.grid.cell(this._molColName,0)}),c.push(this.dataFrame.onRowsAdded.pipe((0,Et.filter)((()=>!this.isJoining))).subscribe((()=>{var e,i;try{if(this.processedValues=this.dataFrame.getCol(this.molColName).toList(),(null===(e=this.template.stages)||void 0===e?void 0:e.length)>0)for(let t=0;t<this.dataFrame.rowCount;t++){const e=this.dataFrame.col(u).get(t);e&&""!==e&&!(null===(i=this.dataFrame.col(u))||void 0===i?void 0:i.isNone(t))||this.dataFrame.set(u,t,this.template.stages[0])}let n=null;for(let t=0;t<this.dataFrame.rowCount;t++){const e=v.grid.cell(this.molColName,t);e&&(""!==e.cell.value&&null!==e.cell.value||(n=e))}n&&t.functions.call("Chem:editMoleculeCell",{cell:n})}catch(t){console.error(t)}}))),this.dataFrame&&c.push(null===(a=this.dataFrame)||void 0===a?void 0:a.onRowsRemoved.subscribe((()=>{try{this.processedValues=this.dataFrame.getCol(this.molColName).toList()}catch(t){console.error(t)}}))),c.push(t.events.onContextMenu.subscribe((i=>{var n,o,a,s,r;try{const t=null===(n=null==i?void 0:i.args)||void 0===n?void 0:n.context;if(!t)return;if((null==t?void 0:t.type)!==e.VIEWER.GRID)return;if(!t.tableView||t.tableView.id!==v.id)return;if((null===(s=null===(a=null===(o=null==i?void 0:i.args)||void 0===o?void 0:o.item)||void 0===a?void 0:a.tableColumn)||void 0===s?void 0:s.name)!==this.molColName)return;const l=null===(r=null==i?void 0:i.args)||void 0===r?void 0:r.menu;if(!l)return;l.item("Add new row",(()=>{this.dataFrame.rows.addNew(null,!0)})),l.item("Duplicate molecule",(()=>{var t,e,n,o;try{this.dataFrame.rows.addNew(null,!0);let a=null;for(let t=0;t<this.dataFrame.rowCount;t++){const e=v.grid.cell(this.molColName,t);e&&(""!==e.cell.value&&null!==e.cell.value||(a=e))}a&&(a.cell.value=null!==(o=null===(n=null===(e=null===(t=null==i?void 0:i.args)||void 0===t?void 0:t.item)||void 0===e?void 0:e.cell)||void 0===n?void 0:n.value)&&void 0!==o?o:"")}catch(t){console.error(t)}}))}catch(e){t.log.error(e)}}))),c.push(v.grid.onCellValueEdited.subscribe((i=>_t(this,void 0,void 0,(function*(){var n,o,a,s;try{if((null===(n=i.tableColumn)||void 0===n?void 0:n.name)===u)return void(yield this.saveCampaign(void 0,!1));if((null===(o=i.tableColumn)||void 0===o?void 0:o.name)!==this.molColName)return;const r=i.cell.value,l=i.tableRowIndex;(null===(a=this.dataFrame.col(p))||void 0===a?void 0:a.get(l))&&""!==(null===(s=this.dataFrame.col(p))||void 0===s?void 0:s.get(l))||this.dataFrame.col(p).set(l,vt(this.dataFrame.col(p)),!1);const c=this.template.compute;if(!r||""===r)return;const m=yield function(i,n,o,a=[],s=[]){return ft(this,void 0,void 0,(function*(){const r=e.TaskBarProgressIndicator.create("Calculating ..."),l=t.chem.convert(i,t.chem.Notation.Unknown,t.chem.Notation.Smiles),c=e.Column.fromStrings(d,[l]),u=e.DataFrame.fromColumns([c]);u.name="HD Single cell values",yield u.meta.detectSemanticTypes(),n.length&&(yield t.chem.descriptors(u,c.name,n));for(const t of o)try{const i=t.args,n=e.Func.find({package:t.package,name:t.name});if(!n.length||!n[0]){console.warn(`Function ${t.name} from package ${t.package} is not found`);continue}const o=n[0],a=o.inputs[0].name,s=o.inputs[1].name;yield o.apply(Object.assign(Object.assign({},i),{[a]:u,[s]:c.name}))}catch(t){console.error(t);continue}for(const e of a){const i=e.args;try{const n=yield t.dapi.scripts.find(e.id);if(n){const t=n.inputs[0].name,e=n.inputs[1].name,o=yield n.apply(Object.assign(Object.assign({},i),{[t]:u,[e]:c.name}));if(o&&o.rowCount===u.rowCount&&"python"===n.language)for(const t of o.columns)t.name=u.columns.getUnusedName(t.name),u.columns.add(t)}}catch(t){console.error(t)}}for(const e of s){const i=e.args;try{const n=yield t.dapi.queries.find(e.id);if(n){const t=n.inputs[0].name,e=[l],o=yield n.apply(Object.assign(Object.assign({},i),{[t]:e}));if(!o||0===o.rowCount)continue;yield Y(u,d,o)}}catch(t){console.error(t)}}return r.close(),u}))}(r,c.descriptors.args,c.functions,c.scripts,c.queries);for(const t of m.columns.toList())t.name!==d&&(this.dataFrame.columns.contains(t.name)||(this.dataFrame.columns.addNew(t.name,t.type).semType=t.semType),this.dataFrame.col(t.name).set(l,t.get(0),!1));this.dataFrame.fireValuesChanged(),this.saveCampaign(void 0,!1)}catch(t){console.error(t)}})))));const r=t.events.onViewRemoved.subscribe((t=>{t.id===v.id&&(c.forEach((t=>t.unsubscribe())),r.unsubscribe())}))}))),300);const g=null==v?void 0:v.getRibbonPanels();if(g&&!q(g)){const e=()=>_t(this,void 0,void 0,(function*(){var t;Q(this,(t=>_t(this,void 0,void 0,(function*(){var e,i,n,a,s,r,l,c,u,d;const p=this.template.compute.descriptors.args,m=this.template.compute.functions,g=null!==(e=this.template.compute.scripts)&&void 0!==e?e:[],y=null!==(i=this.template.compute.queries)&&void 0!==i?i:[],w=t.descriptors,b={descriptors:{enabled:!!(null===(n=null==t?void 0:t.descriptors)||void 0===n?void 0:n.length),args:null!==(a=null==t?void 0:t.descriptors)&&void 0!==a?a:[]},functions:Object.entries(null!==(s=null==t?void 0:t.externals)&&void 0!==s?s:{}).map((([t,e])=>{const i=t.split(":");return{name:i[1],package:i[0],args:e}})),scripts:Object.entries(null!==(r=null==t?void 0:t.scripts)&&void 0!==r?r:{}).filter((([t,e])=>t.startsWith(h)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}})),queries:Object.entries(null!==(l=null==t?void 0:t.queries)&&void 0!==l?l:{}).filter((([t,e])=>t.startsWith(f)&&3===t.split(":").length)).map((([t,e])=>{var i,n;const o=t.split(":");return{name:null!==(i=o[1])&&void 0!==i?i:"",id:null!==(n=o[2])&&void 0!==n?n:"",args:e}}))};this.template.compute=b,this.campaign.template=this.template;const C=w.filter((t=>!p.includes(t))),A={};Object.entries(null!==(c=null==t?void 0:t.externals)&&void 0!==c?c:{}).filter((([t,e])=>{const i=m.find((e=>`${e.package}:${e.name}`===t));return!i||!Object.entries(e).every((([t,e])=>i.args[t]===e))})).forEach((([t,e])=>{A[t]=e}));const T={};Object.entries(null!==(u=null==t?void 0:t.scripts)&&void 0!==u?u:{}).filter((([t,e])=>{const i=g.find((e=>`HTScript:${e.name}:${e.id}`===t));return!i||!Object.entries(e).every((([t,e])=>i.args[t]===e))})).forEach((([t,e])=>{T[t]=e}));const x={};Object.entries(null!==(d=null==t?void 0:t.queries)&&void 0!==d?d:{}).filter((([t,e])=>{const i=y.find((e=>`HTQuery:${e.name}:${e.id}`===t));return!i||!Object.entries(e).every((([t,e])=>i.args[t]===e))})).forEach((([t,e])=>{x[t]=e})),o.setUpdateIndicator(v.grid.root,!0);try{yield gt({descriptors:C,externals:A,scripts:T,queries:x},this.dataFrame,this.molColName),this.dataFrame.fireValuesChanged()}finally{o.setUpdateIndicator(v.grid.root,!1),this.saveCampaign(void 0,!1)}}))),(()=>null),null===(t=this.campaign)||void 0===t?void 0:t.template,!0)})),i=o.iconFA("wrench",e,"Calculate additional properties"),n=o.icons.add((()=>{var t;null===(t=this.dataFrame)||void 0===t||t.rows.addNew(null,!0)}),"Add new row"),a=o.bigButton("Progress tracker",(()=>{var e;this.currentTilesViewId&&t.shell.view(this.currentTilesViewId)&&(null===(e=t.shell.view(this.currentTilesViewId))||void 0===e||e.close()),this._tilesView=new Nt(this),this._tilesView.parentCall=this.parentCall,this._tilesViewTab=t.shell.addView(this._tilesView),this.currentTilesViewId=this._tilesViewTab.name,this._tilesView.onActivated(),t.shell.v=t.shell.view(this.currentTilesViewId)})),c=o.bigButton("Submit",(()=>{var t;const e=null===(t=this._submitView)||void 0===t?void 0:t.render();if(e){const t=o.dialog("Submit");t.add(e),t.addButton("Save",(()=>{this.saveCampaign(),t.close()})),t.addButton("Submit",(()=>{var e;null===(e=this._submitView)||void 0===e||e.submit(),t.close()})),t.show()}}));c.classList.add("hit-design-submit-button");const u=[c];null!==(l=null===(r=null===(s=this.template)||void 0===s?void 0:s.stages)||void 0===r?void 0:r.length)&&void 0!==l&&l&&u.unshift(a),this.campaign&&this.template&&!this.campaign.template&&(this.campaign.template=this.template),u.unshift(i),u.unshift(n),g.push(u),v.setRibbonPanels(g)}return v.parentCall=this.parentCall,v}getSummary(){var i,n,a,s;const r=()=>{var t,e;const i=this._filePath.indexOf(null!==(t=this.campaignId)&&void 0!==t?t:null===(e=this._campaign)||void 0===e?void 0:e.name);return-1===i?this._filePath:this._filePath.substring(0,i-1)},l=Object.assign({},null!==(n=null===(i=this.campaign)||void 0===i?void 0:i.campaignFields)&&void 0!==n?n:this.campaignProps);return this.template&&this.template.campaignFields&&Object.entries(l).forEach((([i,n])=>{const o=this.template.campaignFields.find((t=>t.name===i));o&&"Date"===o.type&&n?"Invalid Date"!==new Date(n).toString()?l[i]=new Date(n).toLocaleDateString():n.date?l[i]=new Date(n.date).toLocaleDateString():l[i]=n:o&&o.type===e.SEMTYPE.MOLECULE&&n&&(l[i]=t.chem.drawMolecule(n))})),Object.assign(Object.assign({Template:null!==(s=null===(a=this.template)||void 0===a?void 0:a.name)&&void 0!==s?s:"Molecules","File path":(()=>{const e=o.icons.edit((()=>{const i=r(),s=o.stringInput("Path",i),l=s.root.getElementsByTagName("label").item(0);l&&l.remove(),s.root.style.width="100%";const c=o.button("Save",(()=>_t(this,void 0,void 0,(function*(){const i=yield function(){return _t(this,void 0,void 0,(function*(){const e=s.value;return e&&""!==e.trim()?!!(yield t.dapi.files.exists(e))||(t.shell.error("Given folder does not exist"),!1):(t.shell.error("Path can not be empty"),!1)}))}();if(!i)return;const l=s.value;l.endsWith("/")?this._filePath=`${l}${this.campaignId}/enriched_table.csv`:this._filePath=`${l}/${this.campaignId}/enriched_table.csv`,this._campaign&&(this._campaign.savePath=this._filePath),yield this.saveCampaign(void 0,!0),o.empty(a);const c=r();n=o.link(c,(()=>{var t,e,i;return this.download(this.dataFrame,null!==(i=null!==(t=this.campaignId)&&void 0!==t?t:null===(e=this._campaign)||void 0===e?void 0:e.name)&&void 0!==i?i:"Molecules")}),C),a.appendChild(n),a.appendChild(e)})))),u=o.button("Cancel",(()=>{o.empty(a),a.appendChild(n),a.appendChild(e)}));o.empty(a),s.addOptions(u),s.addOptions(c),a.appendChild(s.root)}),"Edit file path");e.style.marginLeft="5px";const i=r();let n=o.link(i,(()=>{var t,e,i;return this.download(this.dataFrame,null!==(i=null!==(t=this.campaignId)&&void 0!==t?t:null===(e=this._campaign)||void 0===e?void 0:e.name)&&void 0!==i?i:"Molecules")}),C);const a=o.divH([n,e],{style:{alignItems:"center"}});return a})()},l),{"Number of molecules":(this.dataFrame.rowCount-this._extraStageColsCount).toString(),"Enrichment methods":[this.template.compute.descriptors.enabled?"descriptors":"",...this.template.compute.functions.map((t=>t.name))].filter((t=>t&&""!==t.trim())).join(", ")})}saveCampaign(i,n=!0){var o,a,s,r,l,c,u,d,m,h,f,v,g,y;return _t(this,void 0,void 0,(function*(){const w=this.campaignId,b=this.template.name,C=this.dataFrame,A=w,T={};C.columns.toList().forEach((t=>T[t.name]=t.semType));const x={};C.columns.toList().forEach((t=>x[t.name]=t.type));const S=null!==(r=null!==(a=null===(o=this._tilesView)||void 0===o?void 0:o.sketchStateString)&&void 0!==a?a:null===(s=this.campaign)||void 0===s?void 0:s.tilesViewerFormSketch)&&void 0!==r?r:void 0,I={name:A,templateName:b,status:null!==(c=null!=i?i:null===(l=this.campaign)||void 0===l?void 0:l.status)&&void 0!==c?c:"In Progress",createDate:null!==(d=null===(u=this.campaign)||void 0===u?void 0:u.createDate)&&void 0!==d?d:M(new Date),campaignFields:null!==(h=null===(m=this.campaign)||void 0===m?void 0:m.campaignFields)&&void 0!==h?h:this.campaignProps,columnSemTypes:T,rowCount:null!==(v=null===(f=C.col(p))||void 0===f?void 0:f.toList().filter((t=>"StageDefiningRow"!==t)).length)&&void 0!==v?v:0,filteredRowCount:C.filter.trueCount,savePath:this._filePath,columnTypes:x,tilesViewerFormSketch:S,version:this.version+1},N=`Hit Design/campaigns/${w}/campaign.json`;let E=C;if(yield Pt.files.exists(N)){const e=JSON.parse(yield Pt.files.readAsText(N));if((null!==(g=e.version)&&void 0!==g?g:0)>this.version&&(I.version=Math.max(this.version,null!==(y=e.version)&&void 0!==y?y:0)+1,yield t.dapi.files.exists(this._filePath)))try{const e=yield t.dapi.files.readCsv(this._filePath);E=this.unionDataframes(e,C,this.molColName)}catch(t){console.error(t)}}const _=e.DataFrame.fromColumns(E.columns.toList().filter((t=>!t.name.startsWith("~")))).toCsv();yield t.dapi.files.writeAsText(this._filePath,_);const F=this._designView.saveLayout();return F?I.layout=F.viewState:t.shell.warning("Layout cound not be saved"),I.template=this.template,yield Pt.files.writeAsText(N,JSON.stringify(I)),n&&t.shell.info("Campaign saved successfully."),this.campaign=I,I}))}}class Bt extends e.GridCellRenderer{get name(){return"customGasteigerPNG"}get cellType(){return"customGasteigerPNG"}get defaultHeight(){return 200}get defaultWidth(){return 200}render(t,e,i,n,o,a,s){if(a.gridRow<0||!a.cell.value)return;const r=a.cell.value,l=new Image(n-2,o-2);l.src="data:image/png;base64,"+r,l.onload=function(){t.drawImage(l,e+2,i+2,n-2,o-2)}}}var Ot=function(t,e,i,n){return new(i||(i=Promise))((function(o,a){function s(t){try{l(n.next(t))}catch(t){a(t)}}function r(t){try{l(n.throw(t))}catch(t){a(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof i?e:new i((function(t){t(e)}))).then(s,r)}l((n=n.apply(t,e||[])).next())}))};const Pt=new e.Package;function kt(t,e){return Ot(this,void 0,void 0,(function*(){yield jt(t,e,"Hit Triage")}))}function Vt(){return Ot(this,void 0,void 0,(function*(){const e=t.functions.getCurrentCall();return new wt(e).multiView}))}function Lt(t,e){return Ot(this,void 0,void 0,(function*(){yield jt(t,e,"Hit Design")}))}function jt(i,n,o){return Ot(this,void 0,void 0,(function*(){const a=yield W(o,[]);for(const[o,s]of Object.entries(a)){const o="ingest"in s?s.ingest.query:s.savePath;o&&!1!==(yield t.dapi.files.exists(o))&&i.item(s.name).onSelected.subscribe((i=>Ot(this,void 0,void 0,(function*(){try{const i=yield t.dapi.files.readCsv(o);if(!i)return;const a=s.columnSemTypes;if(a)for(const[t,e]of Object.entries(a)){const n=i.columns.byName(t);n&&(n.semType=e)}const r=e.TableView.create(i,!1);n.preview=r;const l=s.layout;l&&r.loadLayout(e.ViewLayout.fromViewState(l))}catch(t){console.error(t)}}))))}}))}function Dt(){return Ot(this,void 0,void 0,(function*(){const e=t.functions.getCurrentCall();return new Ft(e).multiView}))}function Ht(){return Ot(this,void 0,void 0,(function*(){const e=t.data.demo.molecules(100);return e.name="100 Molecules",e}))}function Mt(){return Ot(this,void 0,void 0,(function*(){const e=t.data.demo.molecules(5e3);return e.name="5000 Molecules",e}))}function Rt(e){return Ot(this,void 0,void 0,(function*(){const i=t.data.demo.molecules(e);return i.name="Variable Molecules number",i}))}function Ut(e,i){return Ot(this,void 0,void 0,(function*(){t.shell.info(e.rowCount),t.shell.info(i)}))}function $t(){return new Bt}})(),hittriage=n})();
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