@datagrok/helm 3.0.1 → 3.0.3

package/files/samples/helm-showcase.csv

@@ -8,20 +8,18 @@ Modified residues (meL/meY),Peptide / modified,PEPTIDE1{[meL].A.G.[meY].T}$$$$
 Head-to-tail cyclic (5),Peptide / cyclic,"PEPTIDE1{A.C.D.E.F}$PEPTIDE1,PEPTIDE1,5:R2-1:R1$$$V2.0"
 Disulfide cyclic,Peptide / cyclic,"PEPTIDE1{A.C.D.E.F.C}$PEPTIDE1,PEPTIDE1,2:R3-6:R3$$$V2.0"
 Cyclic head-to-tail (32-mer),Peptide / cyclic,"PEPTIDE1{A.C.D.E.F.G.H.I.K.L.M.N.P.Q.R.S.T.V.W.Y.A.C.D.E.F.G.H.I.K.L.M.N}$PEPTIDE1,PEPTIDE1,32:R2-1:R1$$$V2.0"
-Inner side-chain cycle (R3-R3),Peptide / cyclic,"PEPTIDE1{A.C.D.E.F.G.H.I.K.L}$PEPTIDE1,PEPTIDE1,3:R3-7:R3$$$V2.0"
-Two side-chain bridges (bicyclic),Peptide / multicyclic,"PEPTIDE1{A.C.D.E.F.G.H.I.K.L.M.N}$PEPTIDE1,PEPTIDE1,2:R3-6:R3|PEPTIDE1,PEPTIDE1,7:R3-11:R3$$$V2.0"
+Inner side-chain cycle (R3-R3),Peptide / cyclic,"PEPTIDE1{A.C.D.E.F.G.C.I.K.L}$PEPTIDE1,PEPTIDE1,3:R3-7:R3$$$V2.0"
+Two side-chain bridges (bicyclic),Peptide / multicyclic,"PEPTIDE1{A.C.D.E.F.D.D.I.K.L.dC.N}$PEPTIDE1,PEPTIDE1,2:R3-6:R3|PEPTIDE1,PEPTIDE1,7:R3-11:R3$$$V2.0"
 "Stapled helix (i, i+4)",Peptide / cyclic,"PEPTIDE1{A.C.D.E.C.G.H.I}$PEPTIDE1,PEPTIDE1,2:R3-5:R3$$$V2.0"
 Branched tri-ring (R3-R3 bridges),Peptide / multicyclic,"PEPTIDE1{C.A.C.A.C.A}|PEPTIDE2{C.A.C.A.C.A}|PEPTIDE3{C.A.C.A.C.A}$PEPTIDE1,PEPTIDE2,1:R3-1:R3|PEPTIDE2,PEPTIDE3,3:R3-3:R3|PEPTIDE3,PEPTIDE1,5:R3-5:R3$$$V2.0"
-Disulfide-rich (insulin-like),Peptide / multicyclic,"PEPTIDE1{G.I.V.E.Q.C.C.T.S.I.C.S.L.Y.Q.L.E.N.Y.C.N}|PEPTIDE2{F.V.N.Q.H.L.C.G.S.H.L.V.E.A.L.Y.L.V.C.G.E.R.G.F.F.Y.T.P.K.T}$PEPTIDE1,PEPTIDE2,7:R3-7:R3|PEPTIDE1,PEPTIDE2,20:R3-19:R3|PEPTIDE1,PEPTIDE1,6:R3-11:R3$$$V2.0"
+Disulfide-rich (insulin-like),Peptide / multicyclic,"PEPTIDE1{G.I.V.E.Q.C.C.T.S.I.C.S.L.Y.Q.L.E.N.Y.C.N}|PEPTIDE2{F.V.N.Q.H.L.C.G.S.H.L.V.E.A.L.Y.L.V.C.G.E.R.G.F.F.Y.T.P}$PEPTIDE1,PEPTIDE2,7:R3-7:R3|PEPTIDE1,PEPTIDE2,20:R3-19:R3|PEPTIDE1,PEPTIDE1,6:R3-11:R3$$$V2.0"
 Two disconnected chains,Peptide / linear,PEPTIDE1{A.C}|PEPTIDE2{G.H}$$$$V2.0
-"Ambiguous position (A,G,C)",Peptide / ambiguity,"PEPTIDE1{(A,G,C)}$$$$"
 RNA tetramer (ribose),Nucleic acid / single,RNA1{r(A)p.r(C)p.r(G)p.r(U)p}$$$$V2.0
 DNA tetramer (deoxy),Nucleic acid / single,RNA1{d(A)p.d(C)p.d(G)p.d(T)p}$$$$V2.0
 RNA 30-mer,Nucleic acid / single,RNA1{r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p}$$$$V2.0
 2'-Fluoro modified ribose,Nucleic acid / modified,RNA1{[fl2r](A)p.[fl2r](C)p.r(G)p.r(U)p}$$$$V2.0
-Phosphorothioate (PS) backbone,Nucleic acid / modified,RNA1{m(G)[sP].m(A)[sP].m(C)[sP].m(U)[sP]}$$$$V2.0
-2'-OMe gapmer (PS wings),Nucleic acid / modified,RNA1{m(A)[sP].m(C)[sP].d(G)p.d(A)p.d(T)p.d(C)p.m(G)[sP].m(U)[sP]}$$$$V2.0
-Bracket repeat (rA)x3,Nucleic acid / modified,RNA1{(r(A)p)'3'}$$$$V2.0
+Phosphorothioate (PS) backbone,Nucleic acid / modified,RNA1{m(G)[cmp].m(A)[msp].m(C)[eop].m(U)[sp]}$$$$V2.0
+2'-OMe gapmer (PS wings),Nucleic acid / modified,RNA1{m(A)[sp].m(C)[sp].d(G)p.d(A)p.d(T)p.d(C)p.m(G)[sp].m(U)[sp]}$$$$V2.0
 Mini duplex (2bp),Nucleic acid / duplex,"RNA1{r(A)p.r(C)p}|RNA2{r(G)p.r(U)p}$RNA1,RNA2,2:pair-5:pair$$$V2.0"
 Blunt duplex (8bp),Nucleic acid / duplex,"RNA1{r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p}|RNA2{r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p}$RNA1,RNA2,2:pair-23:pair|RNA1,RNA2,5:pair-20:pair|RNA1,RNA2,8:pair-17:pair|RNA1,RNA2,11:pair-14:pair|RNA1,RNA2,14:pair-11:pair|RNA1,RNA2,17:pair-8:pair|RNA1,RNA2,20:pair-5:pair|RNA1,RNA2,23:pair-2:pair$$$V2.0"
 Blunt duplex (12bp),Nucleic acid / duplex,"RNA1{r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p}|RNA2{r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p}$RNA1,RNA2,2:pair-35:pair|RNA1,RNA2,5:pair-32:pair|RNA1,RNA2,8:pair-29:pair|RNA1,RNA2,11:pair-26:pair|RNA1,RNA2,14:pair-23:pair|RNA1,RNA2,17:pair-20:pair|RNA1,RNA2,20:pair-17:pair|RNA1,RNA2,23:pair-14:pair|RNA1,RNA2,26:pair-11:pair|RNA1,RNA2,29:pair-8:pair|RNA1,RNA2,32:pair-5:pair|RNA1,RNA2,35:pair-2:pair$$$V2.0"
@@ -48,9 +46,9 @@ Asymmetric duplex (21 sense / 19 anti),Nucleic acid / siRNA,"RNA1{r(A)p.r(C)p.r(
 Palindromic self-pairing duplex,Nucleic acid / duplex,"RNA1{r(G)p.r(C)p.r(G)p.r(C)p.r(G)p.r(C)p.r(G)p.r(C)p}|RNA2{r(G)p.r(C)p.r(G)p.r(C)p.r(G)p.r(C)p.r(G)p.r(C)p}$RNA1,RNA2,2:pair-23:pair|RNA1,RNA2,5:pair-20:pair|RNA1,RNA2,8:pair-17:pair|RNA1,RNA2,11:pair-14:pair|RNA1,RNA2,14:pair-11:pair|RNA1,RNA2,17:pair-8:pair|RNA1,RNA2,20:pair-5:pair|RNA1,RNA2,23:pair-2:pair$$$V2.0"
 DNA blunt duplex (10bp),Nucleic acid / duplex,"RNA1{d(A)p.d(C)p.d(G)p.d(T)p.d(A)p.d(C)p.d(G)p.d(T)p.d(A)p.d(C)p}|RNA2{d(G)p.d(T)p.d(A)p.d(C)p.d(G)p.d(T)p.d(A)p.d(C)p.d(G)p.d(T)p}$RNA1,RNA2,2:pair-29:pair|RNA1,RNA2,5:pair-26:pair|RNA1,RNA2,8:pair-23:pair|RNA1,RNA2,11:pair-20:pair|RNA1,RNA2,14:pair-17:pair|RNA1,RNA2,17:pair-14:pair|RNA1,RNA2,20:pair-11:pair|RNA1,RNA2,23:pair-8:pair|RNA1,RNA2,26:pair-5:pair|RNA1,RNA2,29:pair-2:pair$$$V2.0"
 Tricyclic peptide (3 disulfide bridges),Peptide / multicyclic,"PEPTIDE1{C.A.C.A.C.A.C.A.C.A.C.A}$PEPTIDE1,PEPTIDE1,1:R3-5:R3|PEPTIDE1,PEPTIDE1,3:R3-9:R3|PEPTIDE1,PEPTIDE1,7:R3-11:R3$$$V2.0"
-Lasso peptide (macrolactam + tail),Peptide / cyclic,"PEPTIDE1{A.C.D.E.F.G.H.I}$PEPTIDE1,PEPTIDE1,4:R2-1:R1$$$V2.0"
+Lasso peptide (macrolactam + tail),Peptide / cyclic,"PEPTIDE1{A.C.D.E.F.G.H.I}$PEPTIDE1,PEPTIDE1,4:R3-1:R1$$$V2.0"
 RNA 40-mer single strand,Nucleic acid / single,RNA1{r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p}$$$$V2.0
 Two peptides bridged by one disulfide,Peptide / multicyclic,"PEPTIDE1{A.C.D.E}|PEPTIDE2{F.G.C.H}$PEPTIDE1,PEPTIDE2,2:R3-3:R3$$$V2.0"
 "siRNA 25-mer, 2-nt 3′ overhangs",Nucleic acid / siRNA,"RNA1{r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p}|RNA2{r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p.r(A)p.r(C)p.r(G)p.r(U)p}$RNA1,RNA2,2:pair-71:pair|RNA1,RNA2,5:pair-68:pair|RNA1,RNA2,8:pair-65:pair|RNA1,RNA2,11:pair-62:pair|RNA1,RNA2,14:pair-59:pair|RNA1,RNA2,17:pair-56:pair|RNA1,RNA2,20:pair-53:pair|RNA1,RNA2,23:pair-50:pair|RNA1,RNA2,26:pair-47:pair|RNA1,RNA2,29:pair-44:pair|RNA1,RNA2,32:pair-41:pair|RNA1,RNA2,35:pair-38:pair|RNA1,RNA2,38:pair-35:pair|RNA1,RNA2,41:pair-32:pair|RNA1,RNA2,44:pair-29:pair|RNA1,RNA2,47:pair-26:pair|RNA1,RNA2,50:pair-23:pair|RNA1,RNA2,53:pair-20:pair|RNA1,RNA2,56:pair-17:pair|RNA1,RNA2,59:pair-14:pair|RNA1,RNA2,62:pair-11:pair|RNA1,RNA2,65:pair-8:pair|RNA1,RNA2,68:pair-5:pair$$$V2.0"
 "Hairpin, long apical loop",Nucleic acid / structure,"RNA1{r(G)p.r(C)p.r(G)p.r(A)p.r(A)p.r(A)p.r(A)p.r(A)p.r(A)p.r(C)p.r(G)p.r(C)p}$RNA1,RNA1,2:pair-35:pair|RNA1,RNA1,5:pair-32:pair|RNA1,RNA1,8:pair-29:pair$$$V2.0"
-Peptide–PEG2–RNA triple conjugate,Conjugate / mixed,"PEPTIDE1{A.C.D.E.F}|RNA1{r(A)p.r(C)p.r(G)p}|CHEM1{[PEG2]}$PEPTIDE1,CHEM1,5:R2-1:R1|CHEM1,RNA1,1:R2-1:R1$$$V2.0"
+Peptide–PEG2–RNA triple conjugate,Conjugate / mixed,"PEPTIDE1{A.C.D.E.F}|RNA1{r(A)p.r(C)p.r(G)p}|CHEM1{[PEG2]}$PEPTIDE1,CHEM1,5:R2-1:R1|CHEM1,RNA1,1:R2-1:R1$$$V2.0"

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@datagrok/helm",
   "friendlyName": "Helm",
-  "version": "3.0.1",
+  "version": "3.0.3",
   "author": {
     "name": "Davit Rizhinashvili",
     "email": "drizhinashvili@datagrok.ai"
@@ -11,28 +11,29 @@
     "css/helm.css"
   ],
   "dependencies": {
-    "@datagrok-libraries/bio": "^6.0.0",
+    "@datagrok-libraries/bio": "^6.0.2",
     "@datagrok-libraries/chem-meta": "^1.2.9",
-    "@datagrok-libraries/hwe": "^1.0.1",
+    "@datagrok-libraries/hwe": "^1.0.2",
+    "@datagrok-libraries/test": "^1.3.1",
     "@datagrok-libraries/utils": "^4.6.9",
     "cash-dom": "^8.1.1",
-    "datagrok-api": "^1.26.0",
+    "datagrok-api": "^1.27.3",
     "dayjs": "^1.10.6",
     "lru-cache": "^10.4.3",
     "rxjs": "^6.5.5",
-    "wu": "^2.1.0",
-    "@datagrok-libraries/test": "^1.1.0"
+    "wu": "^2.1.0"
   },
   "devDependencies": {
     "@datagrok/bio": "^2.25.1",
     "@datagrok/chem": "^1.17.0",
+    "@playwright/test": "^1.48.0",
     "@types/node": "17.0.45",
     "@types/webpack-env": "^1.18.5",
     "@types/wu": "^2.1.44",
     "@typescript-eslint/eslint-plugin": "^7.16.0",
     "@typescript-eslint/parser": "^7.16.0",
     "css-loader": "^6.7.3",
-    "datagrok-tools": "^6.3.0",
+    "datagrok-tools": "^6.3.3",
     "eslint": "^8.57.1",
     "eslint-config-google": "^0.14.0",
     "eslint-plugin-deprecation": "^3.0.0",
@@ -78,6 +79,8 @@
   },
   "category": "Bioinformatics",
   "overrides": {
-    "datagrok-api": "$datagrok-api"
-  }
+    "datagrok-api": "$datagrok-api",
+    "uuid": "^11.1.1"
+  },
+  "playwrightTests": "playwright"
 }

package/src/helm-helper.ts

@@ -149,6 +149,9 @@ export class HelmHelper implements IHelmHelper {
       col.setTag('units', 'helm');
       col.setTag('.alphabetIsMultichar', 'true');
       col.setTag('alphabet', 'UN');
+      // set the width of widget in tag.
+      const ww = Math.floor(window.innerWidth * 0.6);
+      col.setTag('.toAtomicWidgetWidth', ww.toString());
       this._singeHelmDf = DG.DataFrame.fromColumns([col]);
     }
     this._singeHelmDf.col('helm')!.set(0, helm);

package/src/package-api.ts

@@ -41,6 +41,7 @@ export namespace funcs {
   }
 
   /**
+   * Convert a column of HELM macromolecules into a column of molfiles
    * @param {DG.Column} col
    *   semType: Macromolecule
    */

package/src/package-test.ts

@@ -1,10 +1,6 @@
 import * as DG from 'datagrok-api/dg';
 import * as grok from 'datagrok-api/grok';
 
-// Do not import anything from JsDrawLite or HelmWebEditor, only to the main Helm package
-// import {JSDraw2ModuleType} from '@datagrok/js-draw-lite/src/types/jsdraw2';
-// import {HelmType, OrgHelmModuleType} from '@datagrok/helm-web-editor/src/types/org-helm';
-
 import {runTests, tests, TestContext, initAutoTests as initTests} from '@datagrok-libraries/test/src/test';
 
 import './tests/_first-tests';

package/src/package.g.ts

@@ -43,6 +43,8 @@ export async function propertiesWidget(sequence: DG.SemanticValue) : Promise<any
   return await PackageFunctions.propertiesWidget(sequence);
 }
 
+//name: Get Molfiles from HELM
+//description: Convert a column of HELM macromolecules into a column of molfiles
 //input: column col { semType: Macromolecule }
 //output: column result
 export function getMolfiles(col: DG.Column<any>) : any {

package/src/package.ts

@@ -186,7 +186,10 @@ export class PackageFunctions {
     return getPropertiesWidget(sequence);
   }
 
-  @grok.decorators.func()
+  @grok.decorators.func({
+    'name': 'Get Molfiles from HELM',
+    'description': 'Convert a column of HELM macromolecules into a column of molfiles',
+  })
   static getMolfiles(
     @grok.decorators.param({'type': 'column', 'options': {'semType': 'Macromolecule'}}) col: DG.Column<string>): DG.Column<string> {
     const helmStrList = col.toList();

package/src/tests/helm-input-tests.ts

@@ -70,16 +70,16 @@ category('HelmInput', () => {
     }
   });
 
-  test('default size is 250x250', async () => {
+  test('default size is 306x250', async () => {
     // `ui.input.helmAsync` with no `editorOptions` should render a compact
     // 250×250 box, NOT stretch to the form row or fall back to hwe's 400×100.
     const helmInput = await ui.input.helmAsync('Macromolecule');
-    helmInput.stringValue = 'PEPTIDE1{[meY].A.G.T}$$$$';
+    helmInput.stringValue = 'PEPTIDE1{[meY].A.G.T.T.T.T.T.T.T.T.T.T.T.T}$$$$';
     const dlg = ui.dialog('Helm Input Default Size').add(helmInput).show();
     try {
       await delay(500);
       const host = helmInput.getInput();
-      expect(Math.abs(host.clientWidth - 250) <= 4, true, `default width ~250 (was ${host.clientWidth})`);
+      expect(Math.abs(host.clientWidth - 306) <= 4, true, `default width ~306 (was ${host.clientWidth})`);
       expect(Math.abs(host.clientHeight - 250) <= 4, true, `default height ~250 (was ${host.clientHeight})`);
     } finally {
       dlg.close();

package/src/utils/helm-grid-cell-renderer.ts

@@ -359,6 +359,9 @@ export class HelmGridCellRenderer extends DG.GridCellRenderer {
     g: CanvasRenderingContext2D, x: number, y: number, w: number, h: number,
     gridCell: DG.GridCell, cellStyle: DG.GridCellStyle
   ): void {
+    const minSize = 36 / window.devicePixelRatio;
+    if (w < minSize || h < minSize)
+      return;
     HelmGridCellRendererBack.getOrCreate(gridCell).render(g, x, y, w, h, gridCell, cellStyle);
   }
 }

package/test-console-output-1.log

@@ -0,0 +1,344 @@
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Helm/3.0.3.X-4bf0c4e3/m2F6eYJ1nWULmmyurFrUj1Us2hvxVTAl/1/detectors.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Helm/3.0.3.X-4bf0c4e3/m2F6eYJ1nWULmmyurFrUj1Us2hvxVTAl/1/css/helm.css
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Helm/3.0.3.X-4bf0c4e3/m2F6eYJ1nWULmmyurFrUj1Us2hvxVTAl/1/dist/package.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/js/common/openchemlib-full.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/package.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/datagrok.md
+CONSOLE LOG REQUEST: 200, http://localhost:8080/font/Roboto-Italic.woff2
+CONSOLE LOG REQUEST: 200, http://localhost:8080/font/Roboto-LightItalic.woff2
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1//dist/RDKit_minimal_1.2.23.wasm
+CONSOLE LOG ENTRY: RDKit module package instance was initialized
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.28.2.X-4bf0c4e3/64IfgpEAbOmYOOkjzavA6ftfPV31TyPT/1/css/helm.css
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.28.2.X-4bf0c4e3/64IfgpEAbOmYOOkjzavA6ftfPV31TyPT/1/dist/package.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Flibraries%2FHELMmonomerSchema.json?&&flag=3
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/files/Bio%2Fmonomer-libraries?showFiles=true&onlyCache=false&&recursive=false&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fsample-lib-Aca-colored.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fsample-lib-Aca-colored.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/files/Bio%2Fmonomer-sets?showFiles=true&onlyCache=false&&recursive=false&flag=3
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-sets%2Fmonomer-set-PEPTIDE.json?&&flag=3
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-sets%2Fmonomer-set-RNA.json?&&flag=3
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Helm/3.0.3.X-4bf0c4e3/m2F6eYJ1nWULmmyurFrUj1Us2hvxVTAl/1/dist/package-test.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-sets%2Fmonomer-set-PEPTIDE.json?&&flag=3
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-sets%2Fmonomer-set-RNA.json?&&flag=3
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/funcs?text=package.id%2520%253D%2520%2522075a63a0-96d0-11f1-9f52-b3dc58fec0a0%2522
+CONSOLE LOG ENTRY: Running tests...
+CONSOLE LOG ENTRY: [object Object]
+CONSOLE LOG ENTRY: Package testing: Started {{_first}}
+CONSOLE LOG ENTRY: Package testing: Started {{_first}} {{_first}}
+CONSOLE LOG ENTRY: Package testing: Finished {{_first}} {{_first}} with {{success}} for 0 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{Helm}}
+CONSOLE LOG ENTRY: Package testing: Started {{Helm}} {{parseHelm}}
+CONSOLE LOG ENTRY: Package testing: Finished {{Helm}} {{parseHelm}} with {{success}} for 1 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{Helm}} {{complex-monomer}}
+CONSOLE LOG ENTRY: Package testing: Finished {{Helm}} {{complex-monomer}} with {{success}} for 5 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{Helm}} {{complex-monomer+side-chain}}
+CONSOLE LOG ENTRY: Package testing: Finished {{Helm}} {{complex-monomer+side-chain}} with {{success}} for 3 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{Helm}} {{complex-monomer+side-chain-RNA}}
+CONSOLE LOG ENTRY: Package testing: Finished {{Helm}} {{complex-monomer+side-chain-RNA}} with {{success}} for 12 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{Helm}} {{complex-side-chain}}
+CONSOLE LOG ENTRY: Package testing: Finished {{Helm}} {{complex-side-chain}} with {{success}} for 2 ms
+CONSOLE LOG ENTRY: Package testing: Started {{Helm}} {{complex+side-chain+linker}}
+CONSOLE LOG ENTRY: Package testing: Finished {{Helm}} {{complex+side-chain+linker}} with {{success}} for 1 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{findMonomers}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{findMonomers}} {{withoutMissed}}
+CONSOLE LOG ENTRY: Package testing: Finished {{findMonomers}} {{withoutMissed}} with {{success}} for 1 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{findMonomers}} {{withMissed}}
+CONSOLE LOG ENTRY: Package testing: Finished {{findMonomers}} {{withMissed}} with {{success}} for 3 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fsample-lib-Aca-colored.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{renderers}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{renderers}} {{missedInLib}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Helm%2Ftests%2Fsample_HELM-missedInLib.csv?&&flag=10
+CONSOLE LOG REQUEST: 200, http://localhost:8080/images/ribbon/ribbon_sprite.svg
+CONSOLE LOG REQUEST: 200, http://localhost:8080/images/entities/view_layout.svg
+CONSOLE LOG REQUEST: 200, http://localhost:8080/images/viewers/viewers_sprite.png
+CONSOLE LOG ENTRY: Helm: detectors.js: autostartInputs(), ui.input.helmAsync is already defined
+CONSOLE LOG ENTRY: Package testing: Finished {{renderers}} {{missedInLib}} with {{success}} for 422 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{renderers}} {{scatterPlotTooltip}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/scatter-plot.md
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-colors-sizes-markers-labels-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-zoom-and-pack-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-selection-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-regression-line.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/formula-lines-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/annotation-regions-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/formula-lines-annotation-regions-viewers.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatterplot-custom-tooltip-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-labels-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/group-tooltip-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-jitter-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-lines.png
+CONSOLE LOG ENTRY: Package testing: Finished {{renderers}} {{scatterPlotTooltip}} with {{success}} for 907 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/viewers/scatter-plot-molecules.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/webgpu-scatterplot-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/youtube/visualizations2.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fsample-lib-Aca-colored.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{getMolfiles}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{getMolfiles}} {{linear1}}
+CONSOLE LOG ENTRY: Package testing: Finished {{getMolfiles}} {{linear1}} with {{success}} for 403 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fsample-lib-Aca-colored.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{properties-widget}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{properties-widget}} {{Helm}}
+CONSOLE LOG ENTRY: Package testing: Finished {{properties-widget}} {{Helm}} with {{success}} for 12 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{properties-widget}} {{separator}}
+CONSOLE LOG ENTRY: Package testing: Finished {{properties-widget}} {{separator}} with {{success}} for 16 ms
+CONSOLE LOG ENTRY: Package testing: Started {{properties-widget}} {{separator2}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Finished {{properties-widget}} {{separator2}} with {{success}} for 21 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{properties-widget}} {{separator-gaps}}
+CONSOLE LOG ENTRY: Package testing: Finished {{properties-widget}} {{separator-gaps}} with {{success}} for 18 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{properties-widget}} {{fasta-PT}}
+CONSOLE LOG ENTRY: Package testing: Finished {{properties-widget}} {{fasta-PT}} with {{success}} for 15 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{properties-widget}} {{fasta-RNA}}
+CONSOLE LOG ENTRY: Package testing: Finished {{properties-widget}} {{fasta-RNA}} with {{success}} for 9 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{properties-widget}} {{fasta-DNA}}
+CONSOLE LOG ENTRY: Package testing: Finished {{properties-widget}} {{fasta-DNA}} with {{success}} for 21 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{properties-widget}} {{too-long}}
+CONSOLE LOG ENTRY: Package testing: Finished {{properties-widget}} {{too-long}} with {{success}} for 144 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fsample-lib-Aca-colored.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{parseHelm}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{parseHelm}} {{HelmHelper-PT}}
+CONSOLE LOG ENTRY: Package testing: Finished {{parseHelm}} {{HelmHelper-PT}} with {{success}} for 2 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{parseHelm}} {{HelmHelper-PT-cyclic}}
+CONSOLE LOG ENTRY: Package testing: Finished {{parseHelm}} {{HelmHelper-PT-cyclic}} with {{success}} for 2 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{parseHelm}} {{HelmHelper-RNA}}
+CONSOLE LOG ENTRY: Package testing: Finished {{parseHelm}} {{HelmHelper-RNA}} with {{success}} for 5 ms
+CONSOLE LOG ENTRY: Package testing: Started {{parseHelm}} {{HelmHelper-PT-with-gap}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Finished {{parseHelm}} {{HelmHelper-PT-with-gap}} with {{success}} for 3 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{parseHelm}} {{HelmHelper-PT-with-gap-at-connection}}
+CONSOLE LOG ENTRY: Package testing: Finished {{parseHelm}} {{HelmHelper-PT-with-gap-at-connection}} with {{success}} for 5 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fsample-lib-Aca-colored.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{helm-web-editor}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{helm-web-editor}} {{helm-web-editor}}
+CONSOLE LOG ENTRY: Package testing: Finished {{helm-web-editor}} {{helm-web-editor}} with {{success}} for 0 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{helm-web-editor}} {{web-editor-app}}
+CONSOLE LOG ENTRY: Package testing: Finished {{helm-web-editor}} {{web-editor-app}} with {{success}} for 109 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fsample-lib-Aca-colored.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{HelmInput}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{HelmInput}} {{inDialog}}
+CONSOLE LOG ENTRY: Package testing: Finished {{HelmInput}} {{inDialog}} with {{success}} for 512 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{HelmInput}} {{renders-with-nonzero-height (root in a dialog)}}
+CONSOLE LOG ENTRY: Package testing: Finished {{HelmInput}} {{renders-with-nonzero-height (root in a dialog)}} with {{success}} for 520 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{HelmInput}} {{default size is 306x250}}
+CONSOLE LOG ENTRY: Package testing: Finished {{HelmInput}} {{default size is 306x250}} with {{success}} for 521 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{HelmInput}} {{editorOptions.width/height override the default size}}
+CONSOLE LOG ENTRY: Package testing: Finished {{HelmInput}} {{editorOptions.width/height override the default size}} with {{success}} for 522 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{HelmInput}} {{editor canvas sizes from getInput() box (consumer sets height on the host)}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
+CONSOLE LOG REQUEST: 404, http://localhost:8080/help/dialogs/helm-getinput()-size-test.md
+CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
+CONSOLE LOG REQUEST: 404, http://localhost:8080/help/dialogs/helm-getinput()-size-test.mdx
+CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
+CONSOLE LOG ENTRY: Package testing: Finished {{HelmInput}} {{editor canvas sizes from getInput() box (consumer sets height on the host)}} with {{success}} for 814 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{HelmInput}} {{tooltip}}
+CONSOLE LOG ENTRY: Package testing: Finished {{HelmInput}} {{tooltip}} with {{success}} for 291 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fsample-lib-Aca-colored.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{HelmHelper: removeGaps}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{HelmHelper: removeGaps}} {{single-linear-start}}
+CONSOLE LOG ENTRY: Package testing: Finished {{HelmHelper: removeGaps}} {{single-linear-start}} with {{success}} for 2 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{HelmHelper: removeGaps}} {{single-linear-end}}
+CONSOLE LOG ENTRY: Package testing: Finished {{HelmHelper: removeGaps}} {{single-linear-end}} with {{success}} for 1 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{HelmHelper: removeGaps}} {{single-linear-middle}}
+CONSOLE LOG ENTRY: Package testing: Finished {{HelmHelper: removeGaps}} {{single-linear-middle}} with {{success}} for 4 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{HelmHelper: removeGaps}} {{single-cycle-start}}
+CONSOLE LOG ENTRY: Package testing: Finished {{HelmHelper: removeGaps}} {{single-cycle-start}} with {{success}} for 5 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{HelmHelper: removeGaps}} {{single-cycle-end}}
+CONSOLE LOG ENTRY: Package testing: Finished {{HelmHelper: removeGaps}} {{single-cycle-end}} with {{success}} for 7 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{HelmHelper: removeGaps}} {{single-cycle-middle}}
+CONSOLE LOG ENTRY: Package testing: Finished {{HelmHelper: removeGaps}} {{single-cycle-middle}} with {{success}} for 6 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{HelmHelper: removeGaps}} {{single-cycle-gap-at-connection}}
+CONSOLE LOG ENTRY: Package testing: Finished {{HelmHelper: removeGaps}} {{single-cycle-gap-at-connection}} with {{success}} for 3 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fsample-lib-Aca-colored.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{bio-substructure-filters}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{bio-substructure-filters}} {{helm-dialog}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Helm%2Ftests%2Ffilter_HELM.csv?&&flag=10
+CONSOLE LOG ENTRY: TEST: HelmBioFilter.init().sync() waitForElementInDom waiting...
+CONSOLE LOG ENTRY: TEST: HelmBioFilter.init().sync() waitForElementInDom ready
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/621.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/621.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/101.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/101.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1//dist/RDKit_minimal_1.2.23.wasm
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1//dist/RDKit_minimal_1.2.23.wasm
+CONSOLE LOG ENTRY: RDKit Service was initialized
+CONSOLE LOG ENTRY: Package testing: Finished {{bio-substructure-filters}} {{helm-dialog}} with {{success}} for 5305 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{bio-substructure-filters}} {{helm-view}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Helm%2Ftests%2Ffilter_HELM.csv?&&flag=10
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/filters.md
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/filter-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/filter-checkbox-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/filter-radio-mode-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/switch-filter-type-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/chem-structure-filter-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/chem-scaffold-tree-filter-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/fasta-filtering-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/separator-filtering-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/helm-filtering-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/text-filter-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/free-text-filter-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/expression-filter-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/hierarchical-filter-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/bool-combined-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/multi-value-filter-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/filters-drag-column-thumb.png
+CONSOLE LOG ENTRY: Package testing: Finished {{bio-substructure-filters}} {{helm-view}} with {{success}} for 356 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/filters-multi-values-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{bio-substructure-filters}} {{sync-helm}}
+CONSOLE LOG ENTRY: TEST: HelmBioFilter.init().sync() waitForElementInDom waiting...
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Helm%2Ftests%2Ffilter_HELM.csv?&&flag=10
+CONSOLE LOG ENTRY: TEST: HelmBioFilter.init().sync() waitForElementInDom waiting...
+CONSOLE LOG ENTRY: TEST: HelmBioFilter.init().sync() waitForElementInDom waiting...
+CONSOLE LOG ENTRY: TEST: HelmBioFilter.init().sync() waitForElementInDom ready
+CONSOLE LOG ENTRY: TEST: HelmBioFilter.init().sync() waitForElementInDom ready
+CONSOLE LOG REQUEST: 200, http://localhost:8080/images/entities/table.svg
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/concepts/table.md
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
+CONSOLE LOG ENTRY: Package testing: Finished {{bio-substructure-filters}} {{sync-helm}} with {{success}} for 3597 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fsample-lib-Aca-colored.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{activityCliffs}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{activityCliffs}} {{Helm}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Helm%2Fsamples%2FHELM_50.csv?&&flag=10
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.28.2.X-4bf0c4e3/64IfgpEAbOmYOOkjzavA6ftfPV31TyPT/1/dist/234.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.28.2.X-4bf0c4e3/64IfgpEAbOmYOOkjzavA6ftfPV31TyPT/1/dist/242.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.28.2.X-4bf0c4e3/64IfgpEAbOmYOOkjzavA6ftfPV31TyPT/1/dist/731.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.28.2.X-4bf0c4e3/64IfgpEAbOmYOOkjzavA6ftfPV31TyPT/1/dist/276.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.28.2.X-4bf0c4e3/64IfgpEAbOmYOOkjzavA6ftfPV31TyPT/1/dist/950.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.28.2.X-4bf0c4e3/64IfgpEAbOmYOOkjzavA6ftfPV31TyPT/1/dist/950.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.28.2.X-4bf0c4e3/64IfgpEAbOmYOOkjzavA6ftfPV31TyPT/1/dist/242.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.28.2.X-4bf0c4e3/64IfgpEAbOmYOOkjzavA6ftfPV31TyPT/1/dist/242.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.28.2.X-4bf0c4e3/64IfgpEAbOmYOOkjzavA6ftfPV31TyPT/1/dist/589.js
+CONSOLE LOG ENTRY: knn graph: 60.385986328125 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/datagrok.md
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.28.2.X-4bf0c4e3/64IfgpEAbOmYOOkjzavA6ftfPV31TyPT/1/dist/589.js
+CONSOLE LOG ENTRY: fit: 2529.677978515625 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/scatter-plot.md
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.28.2.X-4bf0c4e3/64IfgpEAbOmYOOkjzavA6ftfPV31TyPT/1/dist/111.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.28.2.X-4bf0c4e3/64IfgpEAbOmYOOkjzavA6ftfPV31TyPT/1/dist/111.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.28.2.X-4bf0c4e3/64IfgpEAbOmYOOkjzavA6ftfPV31TyPT/1/dist/242.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.28.2.X-4bf0c4e3/64IfgpEAbOmYOOkjzavA6ftfPV31TyPT/1/dist/242.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.28.2.X-4bf0c4e3/64IfgpEAbOmYOOkjzavA6ftfPV31TyPT/1/dist/589.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.28.2.X-4bf0c4e3/64IfgpEAbOmYOOkjzavA6ftfPV31TyPT/1/dist/589.js
+CONSOLE LOG ENTRY: Package testing: Finished {{activityCliffs}} {{Helm}} with {{success}} for 3839 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fsample-lib-Aca-colored.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{toAtomicLevel-ui}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG ENTRY: Package testing: Started {{toAtomicLevel-ui}} {{fasta-nonlinear}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/206.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/206.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/590.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/590.js
+CONSOLE LOG ENTRY: Package testing: Finished {{toAtomicLevel-ui}} {{fasta-nonlinear}} with {{success}} for 688 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{toAtomicLevel-ui}} {{fasta-with-gap-nonlinear}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/206.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/206.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/590.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/590.js
+CONSOLE LOG ENTRY: Package testing: Finished {{toAtomicLevel-ui}} {{fasta-with-gap-nonlinear}} with {{success}} for 367 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{toAtomicLevel-ui}} {{helm-nonlinear}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/206.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/206.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/590.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/590.js
+CONSOLE LOG ENTRY: Package testing: Finished {{toAtomicLevel-ui}} {{helm-nonlinear}} with {{success}} for 355 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG ENTRY: Package testing: Started {{toAtomicLevel-ui}} {{helm-with-gap-nonlinear}}
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/206.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/206.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/590.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.17.13.X-4bf0c4e3/XXl7CPBwTIH6XyNrjk3AWAqfNNdKI3PJ/1/dist/590.js
+CONSOLE LOG ENTRY: Package testing: Finished {{toAtomicLevel-ui}} {{helm-with-gap-nonlinear}} with {{success}} for 309 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2FHELMCoreLibrary.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fpolytool-lib.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2Fsample-lib-Aca-colored.json?&&flag=4
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/datagrok.md
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true