@datagrok/helm 2.13.8 → 3.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (360) hide show
  1. package/CHANGELOG.md +6 -0
  2. package/css/helm.css +40 -0
  3. package/dist/137.js +2 -0
  4. package/dist/137.js.map +1 -0
  5. package/dist/323.js +2 -0
  6. package/dist/323.js.map +1 -0
  7. package/dist/657.js +2 -0
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  9. package/dist/782.js +2 -0
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  11. package/dist/884.js +2 -0
  12. package/dist/884.js.map +1 -0
  13. package/dist/94.js +2 -0
  14. package/dist/94.js.map +1 -0
  15. package/dist/libraries_bio_src_monomer-works_seq-to-molfile-worker_ts.js +16420 -0
  16. package/dist/libraries_bio_src_monomer-works_seq-to-molfile-worker_ts.js.map +1 -0
  17. package/dist/package-test.js +1 -1
  18. package/dist/package-test.js.map +1 -1
  19. package/dist/package.js +1 -1
  20. package/dist/package.js.map +1 -1
  21. package/dist/vendors-HELM_node_modules_lru-cache_dist_esm_index_js.js +1560 -0
  22. package/dist/vendors-HELM_node_modules_lru-cache_dist_esm_index_js.js.map +1 -0
  23. package/files/samples/helm-showcase.csv +56 -0
  24. package/package.json +8 -12
  25. package/src/helm-helper.ts +134 -410
  26. package/src/package-api.ts +14 -11
  27. package/src/package-test.ts +0 -2
  28. package/src/package-utils.ts +8 -298
  29. package/src/package.g.ts +2 -8
  30. package/src/package.ts +11 -31
  31. package/src/tests/helm-activity-cliffs.ts +2 -2
  32. package/src/tests/helm-input-tests.ts +83 -0
  33. package/src/tests/parse-helm-tests.ts +7 -57
  34. package/src/tests/properties-widget-tests.ts +21 -11
  35. package/src/utils/helm-grid-cell-renderer.ts +141 -151
  36. package/src/utils/index.ts +3 -7
  37. package/src/widgets/helm-input.ts +42 -12
  38. package/src/widgets/properties-widget.ts +18 -11
  39. package/webpack.config.js +1 -12
  40. package/helm/JSDraw/Pistoia.HELM-uncompressed.js +0 -9694
  41. package/helm/JSDraw/ReadMe.txt +0 -8
  42. package/helm/JSDraw/Scilligence.JSDraw2.Lite-uncompressed.js +0 -31126
  43. package/helm/dojo/package.ts +0 -41
  44. package/helm/dojo/types.ts +0 -12
  45. package/src/helm-web-editor.ts +0 -68
  46. package/src/tests/get-monomer-tests.ts +0 -214
  47. package/src/tests/helm-service-tests.ts +0 -98
  48. package/src/types/dojo.ts +0 -3
  49. package/src/types/index.ts +0 -5
  50. package/src/utils/get-monomer.ts +0 -90
  51. package/src/utils/helm-service.ts +0 -166
  52. package/test-console-output-1.log +0 -919
  53. package/test-record-1.mp4 +0 -0
  54. package/vendor/dojo-1.10.10/dijit/BackgroundIframe.js +0 -63
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@@ -1,438 +0,0 @@
1
- define("dojo/request/iframe", [
2
- 'module',
3
- 'require',
4
- './watch',
5
- './util',
6
- './handlers',
7
- '../_base/lang',
8
- '../io-query',
9
- '../query',
10
- '../has',
11
- '../dom',
12
- '../dom-construct',
13
- '../_base/window',
14
- // NodeList enhancement modules;
15
- // must be loaded (but no reference needed)
16
- '../NodeList-dom',
17
- '../NodeList-manipulate'
18
- ], function(module, require, watch, util, handlers, lang, ioQuery, query, has, dom, domConstruct, win){
19
- var mid = module.id.replace(/[\/\.\-]/g, '_'),
20
- onload = mid + '_onload';
21
-
22
- if(!win.global[onload]){
23
- win.global[onload] = function(){
24
- var dfd = iframe._currentDfd;
25
- if(!dfd){
26
- iframe._fireNextRequest();
27
- return;
28
- }
29
-
30
- var response = dfd.response,
31
- options = response.options,
32
- formNode = dom.byId(options.form) || dfd._tmpForm;
33
-
34
- if(formNode){
35
- // remove all the hidden content inputs
36
- var toClean = dfd._contentToClean;
37
- for(var i=0; i<toClean.length; i++){
38
- var key = toClean[i];
39
- //Need to cycle over all nodes since we may have added
40
- //an array value which means that more than one node could
41
- //have the same .name value.
42
- for(var j=0; j<formNode.childNodes.length; j++){
43
- var childNode = formNode.childNodes[j];
44
- if(childNode.name === key){
45
- domConstruct.destroy(childNode);
46
- break;
47
- }
48
- }
49
- }
50
-
51
- // restore original action + target
52
- dfd._originalAction && formNode.setAttribute('action', dfd._originalAction);
53
- if(dfd._originalMethod){
54
- formNode.setAttribute('method', dfd._originalMethod);
55
- formNode.method = dfd._originalMethod;
56
- }
57
- if(dfd._originalTarget){
58
- formNode.setAttribute('target', dfd._originalTarget);
59
- formNode.target = dfd._originalTarget;
60
- }
61
- }
62
-
63
- if(dfd._tmpForm){
64
- domConstruct.destroy(dfd._tmpForm);
65
- delete dfd._tmpForm;
66
- }
67
-
68
- dfd._finished = true;
69
- };
70
- }
71
-
72
- function create(name, onloadstr, uri){
73
- if(win.global[name]){
74
- return win.global[name];
75
- }
76
-
77
- if(win.global.frames[name]){
78
- return win.global.frames[name];
79
- }
80
-
81
- if(!uri){
82
- if(has('config-useXDomain') && !has('config-dojoBlankHtmlUrl')){
83
- console.warn('dojo/request/iframe: When using cross-domain Dojo builds,' +
84
- ' please save dojo/resources/blank.html to your domain and set dojoConfig.dojoBlankHtmlUrl' +
85
- ' to the path on your domain to blank.html');
86
- }
87
- uri = (has('config-dojoBlankHtmlUrl')||require.toUrl('dojo/resources/blank.html'));
88
- }
89
-
90
- var frame = domConstruct.place(
91
- '<iframe id="'+name+'" name="'+name+'" src="'+uri+'" onload="'+onloadstr+
92
- '" style="position: absolute; left: 1px; top: 1px; height: 1px; width: 1px; visibility: hidden">',
93
- win.body());
94
-
95
- win.global[name] = frame;
96
-
97
- return frame;
98
- }
99
-
100
- function setSrc(_iframe, src, replace){
101
- var frame = win.global.frames[_iframe.name];
102
-
103
- if(frame.contentWindow){
104
- // We have an iframe node instead of the window
105
- frame = frame.contentWindow;
106
- }
107
-
108
- try{
109
- if(!replace){
110
- frame.location = src;
111
- }else{
112
- frame.location.replace(src);
113
- }
114
- }catch(e){
115
- console.log('dojo/request/iframe.setSrc: ', e);
116
- }
117
- }
118
-
119
- function doc(iframeNode){
120
- if(iframeNode.contentDocument){
121
- return iframeNode.contentDocument;
122
- }
123
- var name = iframeNode.name;
124
- if(name){
125
- var iframes = win.doc.getElementsByTagName('iframe');
126
- if(iframeNode.document && iframes[name].contentWindow && iframes[name].contentWindow.document){
127
- return iframes[name].contentWindow.document;
128
- }else if(win.doc.frames[name] && win.doc.frames[name].document){
129
- return win.doc.frames[name].document;
130
- }
131
- }
132
- return null;
133
- }
134
-
135
- function createForm(){
136
- return domConstruct.create('form', {
137
- name: mid + '_form',
138
- style: {
139
- position: 'absolute',
140
- top: '-1000px',
141
- left: '-1000px'
142
- }
143
- }, win.body());
144
- }
145
-
146
- function fireNextRequest(){
147
- // summary:
148
- // Internal method used to fire the next request in the queue.
149
- var dfd;
150
- try{
151
- if(iframe._currentDfd || !iframe._dfdQueue.length){
152
- return;
153
- }
154
- do{
155
- dfd = iframe._currentDfd = iframe._dfdQueue.shift();
156
- }while(dfd && (dfd.canceled || (dfd.isCanceled && dfd.isCanceled())) && iframe._dfdQueue.length);
157
-
158
- if(!dfd || dfd.canceled || (dfd.isCanceled && dfd.isCanceled())){
159
- iframe._currentDfd = null;
160
- return;
161
- }
162
-
163
- var response = dfd.response,
164
- options = response.options,
165
- c2c = dfd._contentToClean = [],
166
- formNode = dom.byId(options.form),
167
- notify = util.notify,
168
- data = options.data || null,
169
- queryStr;
170
-
171
- if(!dfd._legacy && options.method === 'POST' && !formNode){
172
- formNode = dfd._tmpForm = createForm();
173
- }else if(options.method === 'GET' && formNode && response.url.indexOf('?') > -1){
174
- queryStr = response.url.slice(response.url.indexOf('?') + 1);
175
- data = lang.mixin(ioQuery.queryToObject(queryStr), data);
176
- }
177
-
178
- if(formNode){
179
- if(!dfd._legacy){
180
- var parentNode = formNode;
181
- do{
182
- parentNode = parentNode.parentNode;
183
- }while(parentNode && parentNode !== win.doc.documentElement);
184
-
185
- // Append the form node or some browsers won't work
186
- if(!parentNode){
187
- formNode.style.position = 'absolute';
188
- formNode.style.left = '-1000px';
189
- formNode.style.top = '-1000px';
190
- win.body().appendChild(formNode);
191
- }
192
-
193
- if(!formNode.name){
194
- formNode.name = mid + '_form';
195
- }
196
- }
197
-
198
- // if we have things in data, we need to add them to the form
199
- // before submission
200
- if(data){
201
- var createInput = function(name, value){
202
- domConstruct.create('input', {
203
- type: 'hidden',
204
- name: name,
205
- value: value
206
- }, formNode);
207
- c2c.push(name);
208
- };
209
- for(var x in data){
210
- var val = data[x];
211
- if(lang.isArray(val) && val.length > 1){
212
- for(var i=0; i<val.length; i++){
213
- createInput(x, val[i]);
214
- }
215
- }else{
216
- // Explicitly search for nodes in the dom tree
217
- // using formNode[x] may access attributes of the
218
- // form node itself, e.g. formNode['action']
219
- var n = query("input[name='"+x+"']", formNode);
220
-
221
- // Not found if indexOf == -1
222
- if(n.indexOf() == -1){
223
- createInput(x, val);
224
- }else{
225
- n.val(val);
226
- }
227
- }
228
- }
229
- }
230
-
231
- //IE requires going through getAttributeNode instead of just getAttribute in some form cases,
232
- //so use it for all. See #2844
233
- var actionNode = formNode.getAttributeNode('action'),
234
- methodNode = formNode.getAttributeNode('method'),
235
- targetNode = formNode.getAttributeNode('target');
236
-
237
- if(response.url){
238
- dfd._originalAction = actionNode ? actionNode.value : null;
239
- if(actionNode){
240
- actionNode.value = response.url;
241
- }else{
242
- formNode.setAttribute('action', response.url);
243
- }
244
- }
245
-
246
- if(!dfd._legacy){
247
- dfd._originalMethod = methodNode ? methodNode.value : null;
248
- if(methodNode){
249
- methodNode.value = options.method;
250
- }else{
251
- formNode.setAttribute('method', options.method);
252
- }
253
- }else{
254
- if(!methodNode || !methodNode.value){
255
- if(methodNode){
256
- methodNode.value = options.method;
257
- }else{
258
- formNode.setAttribute('method', options.method);
259
- }
260
- }
261
- }
262
-
263
- dfd._originalTarget = targetNode ? targetNode.value : null;
264
- if(targetNode){
265
- targetNode.value = iframe._iframeName;
266
- }else{
267
- formNode.setAttribute('target', iframe._iframeName);
268
- }
269
- formNode.target = iframe._iframeName;
270
-
271
- notify && notify.emit('send', response, dfd.promise.cancel);
272
- iframe._notifyStart(response);
273
- formNode.submit();
274
- }else{
275
- // otherwise we post a GET string by changing URL location for the
276
- // iframe
277
-
278
- var extra = '';
279
- if(response.options.data){
280
- extra = response.options.data;
281
- if(typeof extra !== 'string'){
282
- extra = ioQuery.objectToQuery(extra);
283
- }
284
- }
285
- var tmpUrl = response.url + (response.url.indexOf('?') > -1 ? '&' : '?') + extra;
286
- notify && notify.emit('send', response, dfd.promise.cancel);
287
- iframe._notifyStart(response);
288
- iframe.setSrc(iframe._frame, tmpUrl, true);
289
- }
290
- }catch(e){
291
- dfd.reject(e);
292
- }
293
- }
294
-
295
- // dojo/request/watch handlers
296
- function isValid(response){
297
- return !this.isFulfilled();
298
- }
299
- function isReady(response){
300
- return !!this._finished;
301
- }
302
- function handleResponse(response, error){
303
- if(!error){
304
- try{
305
- var options = response.options,
306
- doc = iframe.doc(iframe._frame),
307
- handleAs = options.handleAs;
308
-
309
- if(handleAs !== 'html'){
310
- if(handleAs === 'xml'){
311
- // IE6-8 have to parse the XML manually. See http://bugs.dojotoolkit.org/ticket/6334
312
- if(doc.documentElement.tagName.toLowerCase() === 'html'){
313
- query('a', doc.documentElement).orphan();
314
- var xmlText = doc.documentElement.innerText || doc.documentElement.textContent;
315
- xmlText = xmlText.replace(/>\s+</g, '><');
316
- response.text = lang.trim(xmlText);
317
- }else{
318
- response.data = doc;
319
- }
320
- }else{
321
- // 'json' and 'javascript' and 'text'
322
- response.text = doc.getElementsByTagName('textarea')[0].value; // text
323
- }
324
- handlers(response);
325
- }else{
326
- response.data = doc;
327
- }
328
- }catch(e){
329
- error = e;
330
- }
331
- }
332
-
333
- if(error){
334
- this.reject(error);
335
- }else if(this._finished){
336
- this.resolve(response);
337
- }else{
338
- this.reject(new Error('Invalid dojo/request/iframe request state'));
339
- }
340
- }
341
- function last(response){
342
- this._callNext();
343
- }
344
-
345
- var defaultOptions = {
346
- method: 'POST'
347
- };
348
- function iframe(url, options, returnDeferred){
349
- var response = util.parseArgs(url, util.deepCreate(defaultOptions, options), true);
350
- url = response.url;
351
- options = response.options;
352
-
353
- if(options.method !== 'GET' && options.method !== 'POST'){
354
- throw new Error(options.method + ' not supported by dojo/request/iframe');
355
- }
356
-
357
- if(!iframe._frame){
358
- iframe._frame = iframe.create(iframe._iframeName, onload + '();');
359
- }
360
-
361
- var dfd = util.deferred(response, null, isValid, isReady, handleResponse, last);
362
- dfd._callNext = function(){
363
- if(!this._calledNext){
364
- this._calledNext = true;
365
- iframe._currentDfd = null;
366
- iframe._fireNextRequest();
367
- }
368
- };
369
- dfd._legacy = returnDeferred;
370
-
371
- iframe._dfdQueue.push(dfd);
372
- iframe._fireNextRequest();
373
-
374
- watch(dfd);
375
-
376
- return returnDeferred ? dfd : dfd.promise;
377
- }
378
-
379
- /*=====
380
- iframe = function(url, options){
381
- // summary:
382
- // Sends a request using an iframe element with the given URL and options.
383
- // url: String
384
- // URL to request
385
- // options: dojo/request/iframe.__Options?
386
- // Options for the request.
387
- // returns: dojo/request.__Promise
388
- };
389
- iframe.__BaseOptions = declare(request.__BaseOptions, {
390
- // form: DOMNode?
391
- // A form node to use to submit data to the server.
392
- // data: String|Object?
393
- // Data to transfer. When making a GET request, this will
394
- // be converted to key=value parameters and appended to the
395
- // URL.
396
- });
397
- iframe.__MethodOptions = declare(null, {
398
- // method: String?
399
- // The HTTP method to use to make the request. Must be
400
- // uppercase. Only `"GET"` and `"POST"` are accepted.
401
- // Default is `"POST"`.
402
- });
403
- iframe.__Options = declare([iframe.__BaseOptions, iframe.__MethodOptions]);
404
-
405
- iframe.get = function(url, options){
406
- // summary:
407
- // Send an HTTP GET request using an iframe element with the given URL and options.
408
- // url: String
409
- // URL to request
410
- // options: dojo/request/iframe.__BaseOptions?
411
- // Options for the request.
412
- // returns: dojo/request.__Promise
413
- };
414
- iframe.post = function(url, options){
415
- // summary:
416
- // Send an HTTP POST request using an iframe element with the given URL and options.
417
- // url: String
418
- // URL to request
419
- // options: dojo/request/iframe.__BaseOptions?
420
- // Options for the request.
421
- // returns: dojo/request.__Promise
422
- };
423
- =====*/
424
- iframe.create = create;
425
- iframe.doc = doc;
426
- iframe.setSrc = setSrc;
427
-
428
- // TODO: Make these truly private in 2.0
429
- iframe._iframeName = mid + '_IoIframe';
430
- iframe._notifyStart = function(){};
431
- iframe._dfdQueue = [];
432
- iframe._currentDfd = null;
433
- iframe._fireNextRequest = fireNextRequest;
434
-
435
- util.addCommonMethods(iframe, ['GET', 'POST']);
436
-
437
- return iframe;
438
- });
@@ -1,129 +0,0 @@
1
- /*
2
- Copyright (c) 2004-2017, The JS Foundation All Rights Reserved.
3
- Available via Academic Free License >= 2.1 OR the modified BSD license.
4
- see: http://dojotoolkit.org/license for details
5
- */
6
- //>>built
7
- define("dojo/request/script",["module","./watch","./util","../_base/kernel","../_base/array","../_base/lang","../on","../dom","../dom-construct","../has","../_base/window"],function(_1,_2,_3,_4,_5,_6,on,_7,_8,_9,_a){
8
- _9.add("script-readystatechange",function(_b,_c){
9
- var _d=_c.createElement("script");
10
- return typeof _d["onreadystatechange"]!=="undefined"&&(typeof _b["opera"]==="undefined"||_b["opera"].toString()!=="[object Opera]");
11
- });
12
- var _e=_1.id.replace(/[\/\.\-]/g,"_"),_f=0,_10=_9("script-readystatechange")?"readystatechange":"load",_11=/complete|loaded/,_12=_4.global[_e+"_callbacks"]={},_13=[];
13
- function _14(id,url,_15,_16){
14
- var doc=(_15||_a.doc),_17=doc.createElement("script");
15
- if(_16){
16
- on.once(_17,"error",_16);
17
- }
18
- _17.type="text/javascript";
19
- try{
20
- _17.src=url;
21
- }
22
- catch(err){
23
- _16&&_16(_17);
24
- }
25
- _17.id=id;
26
- _17.async=true;
27
- _17.charset="utf-8";
28
- return doc.getElementsByTagName("head")[0].appendChild(_17);
29
- };
30
- function _18(id,_19,_1a){
31
- _8.destroy(_7.byId(id,_19));
32
- if(_12[id]){
33
- if(_1a){
34
- _12[id]=function(){
35
- delete _12[id];
36
- };
37
- }else{
38
- delete _12[id];
39
- }
40
- }
41
- };
42
- function _1b(dfd){
43
- var _1c=dfd.response.options,_1d=_1c.ioArgs?_1c.ioArgs.frameDoc:_1c.frameDoc;
44
- _13.push({id:dfd.id,frameDoc:_1d});
45
- if(_1c.ioArgs){
46
- _1c.ioArgs.frameDoc=null;
47
- }
48
- _1c.frameDoc=null;
49
- };
50
- function _1e(dfd,_1f){
51
- if(dfd.canDelete){
52
- _20._remove(dfd.id,_1f.options.frameDoc,true);
53
- }
54
- };
55
- function _21(_22){
56
- if(_13&&_13.length){
57
- _5.forEach(_13,function(_23){
58
- _20._remove(_23.id,_23.frameDoc);
59
- _23.frameDoc=null;
60
- });
61
- _13=[];
62
- }
63
- return _22.options.jsonp?!_22.data:true;
64
- };
65
- function _24(_25){
66
- return !!this.scriptLoaded;
67
- };
68
- function _26(_27){
69
- var _28=_27.options.checkString;
70
- return _28&&eval("typeof("+_28+") !== \"undefined\"");
71
- };
72
- function _29(_2a,_2b){
73
- if(this.canDelete){
74
- _1b(this);
75
- }
76
- if(_2b){
77
- this.reject(_2b);
78
- }else{
79
- this.resolve(_2a);
80
- }
81
- };
82
- function _20(url,_2c,_2d){
83
- var _2e=_3.parseArgs(url,_3.deepCopy({},_2c));
84
- url=_2e.url;
85
- _2c=_2e.options;
86
- var dfd=_3.deferred(_2e,_1e,_21,_2c.jsonp?null:(_2c.checkString?_26:_24),_29);
87
- _6.mixin(dfd,{id:_e+(_f++),canDelete:false});
88
- if(_2c.jsonp){
89
- var _2f=new RegExp("[?&]"+_2c.jsonp+"=");
90
- if(!_2f.test(url)){
91
- url+=(~url.indexOf("?")?"&":"?")+_2c.jsonp+"="+(_2c.frameDoc?"parent.":"")+_e+"_callbacks."+dfd.id;
92
- }
93
- dfd.canDelete=true;
94
- _12[dfd.id]=function(_30){
95
- _2e.data=_30;
96
- dfd.handleResponse(_2e);
97
- };
98
- }
99
- if(_3.notify){
100
- _3.notify.emit("send",_2e,dfd.promise.cancel);
101
- }
102
- if(!_2c.canAttach||_2c.canAttach(dfd)){
103
- var _31=_20._attach(dfd.id,url,_2c.frameDoc,function(_32){
104
- if(!(_32 instanceof Error)){
105
- var _33=new Error("Error loading "+(_32.target?_32.target.src:"script"));
106
- _33.source=_32;
107
- _32=_33;
108
- }
109
- dfd.reject(_32);
110
- _20._remove(dfd.id,_2c.frameDoc,true);
111
- });
112
- if(!_2c.jsonp&&!_2c.checkString){
113
- var _34=on(_31,_10,function(evt){
114
- if(evt.type==="load"||_11.test(_31.readyState)){
115
- _34.remove();
116
- dfd.scriptLoaded=evt;
117
- }
118
- });
119
- }
120
- }
121
- _2(dfd);
122
- return _2d?dfd:dfd.promise;
123
- };
124
- _20.get=_20;
125
- _20._attach=_14;
126
- _20._remove=_18;
127
- _20._callbacksProperty=_e+"_callbacks";
128
- return _20;
129
- });