@datagrok/helm 1.0.7 → 1.0.10

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Files changed (7) hide show
  1. package/dist/package-test.js +425 -0
  2. package/dist/package.js +2337 -0
  3. package/files/{HELMCoreLibrary.json → libraries/HELMCoreLibrary.json} +0 -0
  4. package/package.json +6 -6
  5. package/src/package.ts +12 -8
  6. package/{test-Helm-34f75e5127b8-30bac77e.html → test-Helm-34f75e5127b8-c2851674.html} +2 -2
  7. package/npmignore +0 -26
package/package.json CHANGED
@@ -2,13 +2,13 @@
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  "name": "@datagrok/helm",
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  "beta": false,
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  "friendlyName": "Helm",
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- "version": "1.0.7",
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+ "version": "1.0.10",
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  "description": "",
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  "dependencies": {
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  "datagrok-api": "^1.4.12",
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  "cash-dom": "latest",
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  "dayjs": "latest",
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- "@datagrok-libraries/utils": "latest",
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+ "@datagrok-libraries/utils": "^1.4.0",
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  "@datagrok-libraries/bio": "^2.8.4",
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  "ts-loader": "^9.2.5",
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  "typescript": "^4.4.2"
@@ -45,10 +45,10 @@
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  "build": "webpack",
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  "debug-local": "grok publish local",
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  "release-local": "grok publish local --release",
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- "debug-helm-dev": "grok publish dev --rebuild",
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- "release-helm-dev": "grok publish dev --rebuild --release",
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- "debug-helm-public": "grok publish public --rebuild",
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- "release-helm-public": "grok publish public --rebuild --release",
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+ "debug-helm-dev": "grok publish dev",
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+ "release-helm-dev": "grok publish dev --release",
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+ "debug-helm-public": "grok publish public",
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+ "release-helm-public": "grok publish public --release",
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  "lint": "eslint \"./src/**/*.ts\"",
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  "lint-fix": "eslint \"./src/**/*.ts\" --fix",
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  "test": "set HOST=dev && jest",
package/src/package.ts CHANGED
@@ -26,6 +26,11 @@ export async function initHelm(): Promise<void> {
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  grid.invalidate();
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  }
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+ //name: getLru
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+ export async function getLru() {
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+ return await grok.functions.call('Bio:Lru');
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+ }
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+
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  //tags: cellEditor
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  //description: Macromolecule
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  //input: grid_cell cell
@@ -43,8 +48,8 @@ export function editMoleculeCell(cell: DG.GridCell): void {
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  mexfilter: true
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  });
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  var sizes = app.calculateSizes();
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- app.canvas.resize(sizes.rightwidth, sizes.topheight - 210);
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- var s = {width: sizes.rightwidth + 'px', height: sizes.bottomheight + 'px'};
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+ app.canvas.resize(sizes.rightwidth - 100, sizes.topheight - 210);
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+ var s = {width: sizes.rightwidth - 100 + 'px', height: sizes.bottomheight + 'px'};
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  //@ts-ignore
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  scil.apply(app.sequence.style, s);
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  //@ts-ignore
@@ -84,8 +89,8 @@ export function editMoleculeCell(cell: DG.GridCell): void {
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  //tags: panel, widgets
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  //input: string helmString {semType: Macromolecule}
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  //output: widget result
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- export function detailsPanel(helmString: string) {
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- //return new DG.Widget(ui.divText(lru.get(helmString)));
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+ export async function detailsPanel(helmString: string) {
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+ const lru = await getLru();
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  const result = lru.get(helmString).split(',');
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  return new DG.Widget(
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  ui.tableFromMap({
@@ -102,7 +107,7 @@ export function detailsPanel(helmString: string) {
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  }
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- async function loadDialog () {
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+ async function loadDialog() {
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  let res = (await _package.files.list(`${LIB_PATH}`, false, '')).map(it => it.fileName);
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  let FilesList = await ui.choiceInput('Monomer Libraries', ' ', res);
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  let grid = grok.shell.tv.grid;
@@ -124,7 +129,7 @@ export async function libraryPanel(helmColumn: DG.Column) {
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  //@ts-ignore
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  let loadButton = ui.button('Load Library');
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  loadButton.addEventListener('click', loadDialog);
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- let list = (await _package.files.list(`${LIB_PATH}`, false, '')).map(it => it.fileName);
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+ let list = (await _package.files.list(`${LIB_PATH}`, false, '')).map(it => it.fileName);
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  let usedLibraries = [];
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  for (let j = 0; j <= i; j++) {
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  usedLibraries.push(await grok.dapi.userDataStorage.getValue(STORAGE_NAME, j.toString(), true));
@@ -212,11 +217,10 @@ function getRS(smiles: string) {
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  async function monomerManager(value: string) {
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  let df: any[];
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- if(value.endsWith('.sdf')) {
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+ if (value.endsWith('.sdf')) {
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  const file = await _package.files.readAsBytes(`${LIB_PATH}${value}`);
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  const dfSdf = await grok.functions.call('Chem:importSdf', {bytes: file});
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  df = createJsonMonomerLibFromSdf(dfSdf[0]);
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-
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  } else {
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  const file = await _package.files.readAsText(`${LIB_PATH}${value}`);
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  df = JSON.parse(file);
package/{test-Helm-34f75e5127b8-30bac77e.html → test-Helm-34f75e5127b8-c2851674.html} RENAMED
@@ -1,4 +1,4 @@
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- <html><head><meta charset="utf-8"/><title>Helm Test Report. Datagrok version datagrok/datagrok:latest SHA=34f75e5127b8. Commit 30bac77e.</title><style type="text/css">html,
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+ <html><head><meta charset="utf-8"/><title>Helm Test Report. Datagrok version datagrok/datagrok:latest SHA=34f75e5127b8. Commit c2851674.</title><style type="text/css">html,
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  body {
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  font-family: Arial, Helvetica, sans-serif;
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  font-size: 1rem;
@@ -229,7 +229,7 @@ header {
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  font-size: 1rem;
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  padding: 0 0.5rem;
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  }
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- </style></head><body><div id="jesthtml-content"><header><h1 id="title">Helm Test Report. Datagrok version datagrok/datagrok:latest SHA=34f75e5127b8. Commit 30bac77e.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-07-18 07:20:30</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Helm/src/__jest__/remote.test.ts</div><div class="suite-time warn">13.861s</div></div><div class="suite-tests"><div class="test-result failed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">failed</div><div class="test-duration">1.486s</div></div><div class="failureMessages"> <pre class="failureMsg">Error: Test result : Helm.Helm.detectMacromolecule : Error: Expected "Macromolecule", got "null"
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+ </style></head><body><div id="jesthtml-content"><header><h1 id="title">Helm Test Report. Datagrok version datagrok/datagrok:latest SHA=34f75e5127b8. Commit c2851674.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-07-27 13:34:55</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Helm/src/__jest__/remote.test.ts</div><div class="suite-time warn">12.359s</div></div><div class="suite-tests"><div class="test-result failed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">failed</div><div class="test-duration">1.302s</div></div><div class="failureMessages"> <pre class="failureMsg">Error: Test result : Helm.Helm.detectMacromolecule : Error: Expected "Macromolecule", got "null"
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  Test result : Helm.Helm.detectHelm : Error: Expected "HELM", got "null"
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  at /home/runner/work/public/public/packages/Helm/src/__jest__/remote.test.ts:67:20
package/npmignore DELETED
@@ -1,26 +0,0 @@
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- # Developer keys
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- upload.keys.json
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-
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- # Dependency directories
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- node_modules/
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-
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- # IDEs
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- # VS Code (https://github.com/github/gitignore/blob/master/Global/VisualStudioCode.gitignore)
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- .vscode/*
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- !.vscode/settings.json
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- !.vscode/tasks.json
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- !.vscode/launch.json
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- !.vscode/extensions.json
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- *.code-workspace
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- .history/
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-
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- # Intellij IDEA/WebStorm (https://github.com/github/gitignore/blob/master/Global/JetBrains.gitignore)
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- .idea/inspectionProfiles/
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- .idea/**/compiler.xml
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- .idea/**/encodings.xml
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- .idea/**/workspace.xml
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- .idea/**/tasks.xml
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- .idea/**/usage.statistics.xml
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- .idea/**/dictionaries
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- .idea/**/shelf
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- .idea/codeStyles/