@datagrok/eda 1.4.5 → 1.4.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +15 -0
- package/dist/package.js +1 -1
- package/dist/package.js.map +1 -1
- package/package.json +3 -3
- package/src/anova/anova-ui.ts +39 -24
- package/src/package-api.ts +4 -0
- package/src/package.g.ts +33 -32
- package/src/package.ts +2 -2
- package/test-console-output-1.log +46 -76
- package/test-record-1.mp4 +0 -0
package/package.json
CHANGED
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@@ -1,7 +1,7 @@
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{
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"name": "@datagrok/eda",
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"friendlyName": "EDA",
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-
"version": "1.4.
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"version": "1.4.7",
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"description": "Exploratory Data Analysis Tools",
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"dependencies": {
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"@datagrok-libraries/math": "^1.2.6",
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@@ -11,7 +11,7 @@
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"@keckelt/tsne": "^1.0.2",
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"@webgpu/types": "^0.1.40",
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"cash-dom": "^8.1.1",
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"datagrok-api": "^1.26.
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"datagrok-api": "^1.26.3",
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"dayjs": "^1.11.9",
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"jstat": "^1.9.6",
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"source-map-loader": "^4.0.1",
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@@ -26,7 +26,7 @@
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"@typescript-eslint/eslint-plugin": "^5.32.0",
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"@typescript-eslint/parser": "^5.32.0",
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"css-loader": "^7.1.2",
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"datagrok-tools": "^4.14.
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"datagrok-tools": "^4.14.55",
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"eslint": "^8.21.0",
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"eslint-config-google": "^0.14.0",
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"style-loader": "^4.0.0",
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package/src/anova/anova-ui.ts
CHANGED
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@@ -27,31 +27,36 @@ enum DEFAULT {
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};
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/** Add one-way ANOVA results */
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function addVizualization(df: DG.DataFrame, factorsName: string, featuresName: string, report: OneWayAnovaReport) {
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function addVizualization(df: DG.DataFrame, factorsName: string, featuresName: string, report: OneWayAnovaReport): void {
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const view = grok.shell.getTableView(df.name);
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grok.shell.v = view;
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const test = report.anovaTable.fStat > report.fCritical;
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-
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const shortConclusion = test ?
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`"${factorsName}" affects the "${featuresName}"` :
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`"${factorsName}" doesn't affect the "${featuresName}"`;
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const
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const boxPlot = DG.Viewer.boxPlot(df, {
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const chart = DG.Viewer.boxPlot(df, {
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categoryColumnNames: [factorsName],
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valueColumnName: featuresName,
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showPValue: false,
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showStatistics: false,
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description: shortConclusion,
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showColorSelector: false,
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autoLayout: false,
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});
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const boxPlotNode = view.dockManager.dock(boxPlot.root, DG.DOCK_TYPE.RIGHT, null, 'ANOVA');
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factor does not produce a significant difference in the "${featuresName}" feature.`);
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ui.tooltip.bind(hypoMd, 'Null hypothesis');
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let node = view.dockManager.dock(chart, DG.DOCK_TYPE.RIGHT, null, 'ANOVA');
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const
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const nullHypoMd = ui.markdown(`**Null Hypothesis:** all group means are equal.`);
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ui.tooltip.bind(nullHypoMd, `The "${factorsName}" factor does not produce a significant difference in the "${featuresName}" feature.`);
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const altHypoMd = ui.markdown(`**Alternative Hypothesis:** at least one group mean differs significantly.`);
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ui.tooltip.bind(altHypoMd, `The "${factorsName}" factor produces a significant difference in the "${featuresName}" feature.`);
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const testMd = ui.markdown(`**Conclusion:** ${test ?
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'significant differences exist between groups.' :
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'no significant differences detected.'}`,
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);
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const tooltipDiv = test ?
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ui.tooltip.bind(testMd, () => tooltipDiv);
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const divResult = ui.divV([
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nullHypoMd,
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altHypoMd,
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testMd,
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ui.link('Learn more',
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() => window.open('https://en.wikipedia.org/wiki/F-test', '_blank'),
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'Click to open in a new tab',
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'Click to open in a new tab.',
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),
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]);
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divResult.style.marginLeft = '20px';
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const
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const reportViewer = getAnovaGrid(report);
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const tabControl = ui.tabControl({
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'Analysis': ui.panel([reportViewer.root]),
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'F-test': ui.panel([divResult]),
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});
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ui.tooltip.bind(tabControl.getPane('Analysis').header, 'ANOVA results summary.');
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ui.tooltip.bind(tabControl.getPane('F-test').header, 'Null hypothesis testing.');
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view.dockManager.dock(tabControl.root, DG.DOCK_TYPE.DOWN, node, '', 0.25);
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reportViewer.root.style.width = '100%';
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} // addVizualization
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/** Create dataframe with one-way ANOVA results. */
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function getAnovaGrid(report: OneWayAnovaReport): DG.Grid {
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@@ -99,13 +114,13 @@ function getAnovaGrid(report: OneWayAnovaReport): DG.Grid {
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]));
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const tooltip = new Map([
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['Source of variance', 'List of the explored variation sources'],
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['SS', 'Sum of squares (SS)'],
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['DF', 'Degrees of freedom (DF)'],
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['MS', 'Mean square (MS)'],
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['F', 'F-statistics (F)'],
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['F-critical', `${report.significance}-critical value of F-statistics
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['p-value', `Probability
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['Source of variance', 'List of the explored variation sources.'],
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['SS', 'Sum of squares (SS). Measure of total variation in the data.'],
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['DF', 'Degrees of freedom (DF). Number of independent values that can vary.'],
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['MS', 'Mean square (MS). Sum of squares divided by degrees of freedom.'],
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['F', 'F-statistics (F). Ratio of between-group to within-group variance.'],
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['F-critical', `${report.significance}-critical value of F-statistics.`],
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['p-value', `Probability of observing this result if groups have equal means.`],
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]);
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grid.onCellTooltip(function(cell, x, y) {
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package/src/package-api.ts
CHANGED
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@@ -8,6 +8,10 @@ import * as DG from 'datagrok-api/dg';
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export namespace funcs {
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export async function info(): Promise<void> {
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return await grok.functions.call('EDA:Info', {});
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}
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export async function init(): Promise<void> {
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return await grok.functions.call('EDA:Init', {});
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}
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package/src/package.g.ts
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import {PackageFunctions} from './package';
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import * as DG from 'datagrok-api/dg';
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//name: info
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export function info() : void {
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PackageFunctions.info();
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}
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//input: dataframe df
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//input: column xCol { type: numerical }
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//input: column yCol { type: numerical }
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//input: double epsilon { caption: Epsilon;
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//input: int minPts { caption: Minimum points;
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//input: double epsilon = 0.02 { caption: Epsilon; description: The maximum distance between two samples for them to be considered as in the same neighborhood. }
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//input: int minPts = 4 { caption: Minimum points; description: The number of samples (or total weight) in a neighborhood for a point to be considered as a core point. }
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//output: column result
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//top-menu: ML | Cluster | DBSCAN...
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export async function dbScan(df: DG.DataFrame, xCol: DG.Column, yCol: DG.Column, epsilon: number, minPts: number) : Promise<any> {
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//description: Principal component analysis (PCA)
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//input: dataframe table { caption: Table }
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//input: column_list features { type: numerical; nullable: false }
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//input: int components { showPlusMinus: true; caption: Components; nullable: false; min: 1;
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//input: bool center { caption: Center;
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//input: bool scale { caption: Scale;
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//input: int components = 2 { showPlusMinus: true; caption: Components; nullable: false; min: 1; description: Number of components. }
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//input: bool center = false { caption: Center; description: Indicating whether the variables should be shifted to be zero centered. }
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//input: bool scale = false { caption: Scale; description: Indicating whether the variables should be scaled to have unit variance. }
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//top-menu: ML | Analyze | PCA...
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//help-url: /help/explore/dim-reduction#pca
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export async function PCA(table: DG.DataFrame, features: DG.ColumnList, components: number, center: boolean, scale: boolean) : Promise<void> {
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//tags: dim-red-postprocessing-function
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//input: column col1
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//input: column col2
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//input: double epsilon
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//input: int minimumPoints
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//input: double epsilon = 0.01 { description: Minimum distance between two points to be considered as in the same neighborhood. }
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//input: int minimumPoints = 5 { description: Minimum number of points to form a dense region. }
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//meta.defaultPostProcessingFunction: true
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export async function dbscanPostProcessingFunction(col1: DG.Column, col2: DG.Column, epsilon: number, minimumPoints: number) : Promise<void> {
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await PackageFunctions.dbscanPostProcessingFunction(col1, col2, epsilon, minimumPoints);
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//input: string aggregationMethod
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//input: list<func> preprocessingFuncs
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//input: object preprocessingFuncArgs
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//input: int threshold
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//input: int maxIterations
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//input: bool useWebGPU
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//input: double inflate
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//input: int minClusterSize
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//input: int threshold = 80
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//input: int maxIterations = 10
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//input: bool useWebGPU = false
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//input: double inflate = 2
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//input: int minClusterSize = 5
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//top-menu: ML | Cluster | MCL...
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//editor: EDA:GetMCLEditor
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export async function MCLClustering(df: DG.DataFrame, cols: DG.Column[], metrics: any, weights: number[], aggregationMethod: any, preprocessingFuncs: any[], preprocessingFuncArgs: any[], threshold: number, maxIterations: number, useWebGPU: boolean, inflate: number, minClusterSize: number) : Promise<any> {
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//input: dataframe table
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//input: column_list features { type: numerical }
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//input: column predict { type: numerical }
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//input: int components
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//input: int components = 3
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//input: column names { type: string }
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//output: object plsResults
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export async function PLS(table: DG.DataFrame, features: DG.ColumnList, predict: DG.Column, components: number, names: DG.Column) : Promise<any> {
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//input: dataframe df
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//input: column predictColumn
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//input: double gamma { category: Hyperparameters
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//input: double gamma = 1.0 { category: Hyperparameters }
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//output: dynamic result
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//meta.mlname: linear kernel LS-SVM
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//meta.mlrole: train
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//input: dataframe df
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//input: double gamma { category: Hyperparameters
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//input: double sigma { category: Hyperparameters
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//input: double gamma = 1.0 { category: Hyperparameters }
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//input: double sigma = 1.5 { category: Hyperparameters }
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//output: dynamic result
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//meta.mlname: RBF-kernel LS-SVM
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//meta.mlrole: train
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//input: dataframe df
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//input: double gamma { category: Hyperparameters
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//input: double c { category: Hyperparameters
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//input: double d { category: Hyperparameters
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//input: double gamma = 1.0 { category: Hyperparameters }
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//input: double c = 1 { category: Hyperparameters }
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//input: double d = 2 { category: Hyperparameters }
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//output: dynamic result
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//meta.mlname: polynomial kernel LS-SVM
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//meta.mlrole: train
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//input: dataframe df
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//input: double gamma { category: Hyperparameters
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//input: double kappa { category: Hyperparameters
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//input: double theta { category: Hyperparameters
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//input: double gamma = 1.0 { category: Hyperparameters }
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//input: double kappa = 1 { category: Hyperparameters }
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//input: double theta = 1 { category: Hyperparameters }
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//output: dynamic result
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//meta.mlname: sigmoid kernel LS-SVM
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//input: dataframe df
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//input: column predictColumn
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//input: double rate { category: Hyperparameters;
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//input: double iterations { category: Hyperparameters;
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//input: double penalty { category: Hyperparameters;
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//input: double tolerance { category: Hyperparameters;
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//input: double rate = 1.0 { category: Hyperparameters; min: 0.001; max: 20; description: Learning rate. }
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//input: double iterations = 100 { category: Hyperparameters; min: 1; max: 10000; step: 10; description: Fitting iterations count }
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//input: double penalty = 0.1 { category: Hyperparameters; min: 0.0001; max: 1; description: Regularization rate. }
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//input: double tolerance = 0.001 { category: Hyperparameters; min: 0.00001; max: 0.1; description: Fitting tolerance. }
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//output: dynamic model
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//meta.mlname: Softmax
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//input: dataframe df
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//input: int maxDepth = 6 { min: 0; max: 20; description: Maximum depth of a tree. }
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package/src/package.ts
CHANGED
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@grok.decorators.param({'type':'int','options':{'caption':'Minimum points','initialValue':'4', description: 'The number of samples (or total weight) in a neighborhood for a point to be considered as a core point.'}}) minPts: number) : Promise<DG.Column> {
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CONSOLE LOG ENTRY: fit: 3869.615966796875 ms
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package/test-record-1.mp4
CHANGED
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Binary file
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