@datagrok/eda 1.4.4 → 1.4.5

package/dist/vendors-node_modules_datagrok-libraries_ml_src_distance-matrix_knn-threshold-worker_js.js

@@ -1,286 +0,0 @@
-var eda;
-/******/ (() => { // webpackBootstrap
-/******/ 	"use strict";
-/******/ 	var __webpack_modules__ = ({
-
-/***/ "./node_modules/@datagrok-libraries/ml/src/distance-matrix/knn-threshold-worker.js":
-/*!*****************************************************************************************!*\
-  !*** ./node_modules/@datagrok-libraries/ml/src/distance-matrix/knn-threshold-worker.js ***!
-  \*****************************************************************************************/
-/***/ ((__unused_webpack_module, __webpack_exports__, __webpack_require__) => {
-
-__webpack_require__.r(__webpack_exports__);
-/* harmony import */ var _utils__WEBPACK_IMPORTED_MODULE_0__ = __webpack_require__(/*! ./utils */ "./node_modules/@datagrok-libraries/ml/src/distance-matrix/utils.js");
-/* harmony import */ var _typed_metrics__WEBPACK_IMPORTED_MODULE_1__ = __webpack_require__(/*! ../typed-metrics */ "./node_modules/@datagrok-libraries/ml/src/typed-metrics/index.js");
-/* harmony import */ var _datagrok_libraries_utils_src_bit_array__WEBPACK_IMPORTED_MODULE_2__ = __webpack_require__(/*! @datagrok-libraries/utils/src/bit-array */ "./node_modules/@datagrok-libraries/utils/src/bit-array.js");
-
-
-
-onmessage = async (event) => {
-    const { values, startIdx, endIdx, fnNames, opts, threshold, weights, aggregationMethod } = event.data;
-    try {
-        const knnIndexes = new Array(values[0].length).fill(null).map(() => new Array(0));
-        const knnDistances = new Array(values[0].length).fill(null).map(() => new Array(0));
-        const aggregate = (0,_utils__WEBPACK_IMPORTED_MODULE_0__.getAggregationFunction)(aggregationMethod, weights);
-        const chunkSize = endIdx - startIdx;
-        values.forEach((v, colIdx) => {
-            if ((0,_typed_metrics__WEBPACK_IMPORTED_MODULE_1__.isBitArrayMetric)(fnNames[colIdx])) {
-                for (let i = 0; i < v.length; ++i) {
-                    if ((0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(v[i]))
-                        continue;
-                    values[colIdx][i] = new _datagrok_libraries_utils_src_bit_array__WEBPACK_IMPORTED_MODULE_2__["default"](values[colIdx][i]._data, values[colIdx][i]._length);
-                }
-            }
-        });
-        let cnt = 0;
-        const distanceFns = new Array(fnNames.length).fill(null).map((_, i) => new _typed_metrics__WEBPACK_IMPORTED_MODULE_1__.Measure(fnNames[i]).getMeasure(opts[i]));
-        const startRow = values[0].length - 2 - Math.floor(Math.sqrt(-8 * startIdx + 4 * values[0].length * (values[0].length - 1) - 7) / 2 - 0.5);
-        const startCol = startIdx - values[0].length * startRow + Math.floor((startRow + 1) * (startRow + 2) / 2);
-        let mi = startRow;
-        let mj = startCol;
-        while (cnt < chunkSize) {
-            //const value = seq1List[mi] && seq1List[mj] ? hamming(seq1List[mi], seq1List[mj]) : 0;
-            const distanceValues = distanceFns.map((fn, idx) => !(0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(values[idx][mi]) && !(0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(values[idx][mj]) ?
-                fn(values[idx][mi], values[idx][mj]) : 1);
-            // const value = !isNil(values[mi]) && !isNil(values[mj]) ?
-            //   distanceFn(values[mi], values[mj]) : 1;
-            const value = distanceValues.length === 1 ? distanceValues[0] : aggregate(distanceValues);
-            // insertSmaller(knnDistances[mi], knnIndexes[mi], value, mj);
-            // insertSmaller(knnDistances[mj], knnIndexes[mj], value, mi);
-            if (1 - value > threshold) {
-                knnDistances[mi].push(value);
-                knnIndexes[mi].push(mj);
-                knnDistances[mj].push(value);
-                knnIndexes[mj].push(mi);
-            }
-            cnt++;
-            mj++;
-            if (mj === values[0].length) {
-                mi++;
-                mj = mi + 1;
-            }
-        }
-        postMessage({ knnDistances, knnIndexes });
-    }
-    catch (e) {
-        postMessage({ error: e });
-    }
-};
-//# 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-        const knnIndexes = new Array(values[0].length).fill(null).map(() => new Array(nNeighbours).fill(-1));
-        const knnDistances = new Array(values[0].length).fill(null).map(() => new Array(nNeighbours).fill(999999));
-        const aggregate = (0,_utils__WEBPACK_IMPORTED_MODULE_0__.getAggregationFunction)(aggregationMethod, weights);
-        const chunkSize = endIdx - startIdx;
-        values.forEach((v, colIdx) => {
-            if ((0,_typed_metrics__WEBPACK_IMPORTED_MODULE_1__.isBitArrayMetric)(fnNames[colIdx])) {
-                for (let i = 0; i < v.length; ++i) {
-                    if ((0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(v[i]))
-                        continue;
-                    values[colIdx][i] = new _datagrok_libraries_utils_src_bit_array__WEBPACK_IMPORTED_MODULE_2__["default"](values[colIdx][i]._data, values[colIdx][i]._length);
-                }
-            }
-        });
-        let cnt = 0;
-        const distanceFns = new Array(fnNames.length).fill(null).map((_, i) => new _typed_metrics__WEBPACK_IMPORTED_MODULE_1__.Measure(fnNames[i]).getMeasure(opts[i]));
-        const startRow = values[0].length - 2 - Math.floor(Math.sqrt(-8 * startIdx + 4 * values[0].length * (values[0].length - 1) - 7) / 2 - 0.5);
-        const startCol = startIdx - values[0].length * startRow + Math.floor((startRow + 1) * (startRow + 2) / 2);
-        let mi = startRow;
-        let mj = startCol;
-        while (cnt < chunkSize) {
-            //const value = seq1List[mi] && seq1List[mj] ? hamming(seq1List[mi], seq1List[mj]) : 0;
-            const distanceValues = distanceFns.map((fn, idx) => !(0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(values[idx][mi]) && !(0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(values[idx][mj]) ?
-                fn(values[idx][mi], values[idx][mj]) : 1);
-            // const value = !isNil(values[mi]) && !isNil(values[mj]) ?
-            //   distanceFn(values[mi], values[mj]) : 1;
-            const value = distanceValues.length === 1 ? distanceValues[0] : aggregate(distanceValues);
-            (0,_utils__WEBPACK_IMPORTED_MODULE_0__.insertSmaller)(knnDistances[mi], knnIndexes[mi], value, mj);
-            (0,_utils__WEBPACK_IMPORTED_MODULE_0__.insertSmaller)(knnDistances[mj], knnIndexes[mj], value, mi);
-            cnt++;
-            mj++;
-            if (mj === values[0].length) {
-                mi++;
-                mj = mi + 1;
-            }
-        }
-        postMessage({ knnDistances, knnIndexes });
-    }
-    catch (e) {
-        postMessage({ error: e });
-    }
-};
-//# 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