@datagrok/eda 1.4.2 → 1.4.4

package/dist/vendors-node_modules_datagrok-libraries_ml_src_distance-matrix_knn-worker_js.js.map

@@ -0,0 +1 @@
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Array(values[0].length).fill(null).map(() => new Array(nNeighbours).fill(-1));\n        const knnDistances = new Array(values[0].length).fill(null).map(() => new Array(nNeighbours).fill(999999));\n        const aggregate = getAggregationFunction(aggregationMethod, weights);\n        const chunkSize = endIdx - startIdx;\n        values.forEach((v, colIdx) => {\n            if (isBitArrayMetric(fnNames[colIdx])) {\n                for (let i = 0; i < v.length; ++i) {\n                    if (isNil(v[i]))\n                        continue;\n                    values[colIdx][i] = new BitArray(values[colIdx][i]._data, values[colIdx][i]._length);\n                }\n            }\n        });\n        let cnt = 0;\n        const distanceFns = new Array(fnNames.length).fill(null).map((_, i) => new Measure(fnNames[i]).getMeasure(opts[i]));\n        const startRow = values[0].length - 2 - Math.floor(Math.sqrt(-8 * startIdx + 4 * values[0].length * (values[0].length - 1) - 7) / 2 - 0.5);\n      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package/dist/vendors-node_modules_datagrok-libraries_ml_src_distance-matrix_sparse-matrix-threshold-worker_js.js

@@ -0,0 +1,282 @@
+var eda;
+/******/ (() => { // webpackBootstrap
+/******/ 	"use strict";
+/******/ 	var __webpack_modules__ = ({
+
+/***/ "./node_modules/@datagrok-libraries/ml/src/distance-matrix/sparse-matrix-threshold-worker.js":
+/*!***************************************************************************************************!*\
+  !*** ./node_modules/@datagrok-libraries/ml/src/distance-matrix/sparse-matrix-threshold-worker.js ***!
+  \***************************************************************************************************/
+/***/ ((__unused_webpack_module, __webpack_exports__, __webpack_require__) => {
+
+__webpack_require__.r(__webpack_exports__);
+/* harmony import */ var _utils__WEBPACK_IMPORTED_MODULE_0__ = __webpack_require__(/*! ./utils */ "./node_modules/@datagrok-libraries/ml/src/distance-matrix/utils.js");
+/* harmony import */ var _typed_metrics__WEBPACK_IMPORTED_MODULE_1__ = __webpack_require__(/*! ../typed-metrics */ "./node_modules/@datagrok-libraries/ml/src/typed-metrics/index.js");
+/* harmony import */ var _datagrok_libraries_utils_src_bit_array__WEBPACK_IMPORTED_MODULE_2__ = __webpack_require__(/*! @datagrok-libraries/utils/src/bit-array */ "./node_modules/@datagrok-libraries/utils/src/bit-array.js");
+
+
+
+onmessage = async (event) => {
+    const { values, startIdx, endIdx, sampleLength, fnNames, opts, weights, aggregationMethod } = event.data;
+    try {
+        let distances = new Float32Array(sampleLength);
+        const chunkSize = endIdx - startIdx;
+        const aggregate = (0,_utils__WEBPACK_IMPORTED_MODULE_0__.getAggregationFunction)(aggregationMethod, weights);
+        values.forEach((v, colIdx) => {
+            if ((0,_typed_metrics__WEBPACK_IMPORTED_MODULE_1__.isBitArrayMetric)(fnNames[colIdx])) {
+                for (let i = 0; i < v.length; ++i) {
+                    if ((0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(v[i]))
+                        continue;
+                    values[colIdx][i] = new _datagrok_libraries_utils_src_bit_array__WEBPACK_IMPORTED_MODULE_2__["default"](values[colIdx][i]._data, values[colIdx][i]._length);
+                }
+            }
+        });
+        let cnt = 0;
+        const increment = Math.floor(chunkSize / sampleLength);
+        const distanceFns = new Array(fnNames.length).fill(null).map((_, i) => new _typed_metrics__WEBPACK_IMPORTED_MODULE_1__.Measure(fnNames[i]).getMeasure(opts[i]));
+        const startRow = values[0].length - 2 - Math.floor(Math.sqrt(-8 * startIdx + 4 * values[0].length * (values[0].length - 1) - 7) / 2 - 0.5);
+        const startCol = startIdx - values[0].length * startRow + Math.floor((startRow + 1) * (startRow + 2) / 2);
+        let mi = startRow;
+        let mj = startCol;
+        let distanceArrayCounter = 0;
+        while (cnt < chunkSize && distanceArrayCounter < sampleLength) {
+            //const value = seq1List[mi] && seq1List[mj] ? hamming(seq1List[mi], seq1List[mj]) : 0;
+            const distanceValues = distanceFns.map((fn, idx) => !(0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(values[idx][mi]) && !(0,_utils__WEBPACK_IMPORTED_MODULE_0__.isNil)(values[idx][mj]) ?
+                fn(values[idx][mi], values[idx][mj]) : 1);
+            const value = distanceValues.length === 1 ? distanceValues[0] : aggregate(distanceValues);
+            distances[distanceArrayCounter] = value;
+            distanceArrayCounter++;
+            // const currentIncrement = Math.floor(Math.random() * increment) + 1
+            cnt += increment;
+            mj += increment;
+            while (mj >= values[0].length && cnt < chunkSize) {
+                mi++;
+                mj = mi + 1 + (mj - values[0].length);
+            }
+        }
+        if (distanceArrayCounter < sampleLength)
+            distances = distances.slice(0, distanceArrayCounter);
+        postMessage({ distance: distances });
+    }
+    catch (e) {
+        postMessage({ error: e });
+    }
+};
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