@datagrok/eda 1.4.11 → 1.4.12

package/src/probabilistic-scoring/stat-tools.ts

@@ -0,0 +1,168 @@
+// Probabilistic scoring (pMPO) statistical tools
+// Link: https://pmc.ncbi.nlm.nih.gov/articles/PMC4716604/
+
+import * as grok from 'datagrok-api/grok';
+import * as ui from 'datagrok-api/ui';
+import * as DG from 'datagrok-api/dg';
+
+//@ts-ignore: no types
+import * as jStat from 'jstat';
+
+import {Cutoff, DescriptorStatistics, SigmoidParams} from './pmpo-defs';
+
+const SQRT_2_PI = Math.sqrt(2 * Math.PI);
+
+/** Splits the dataframe into desired and non-desired tables based on the desirability column */
+export function getDesiredTables(df: DG.DataFrame, desirability: DG.Column) {
+  const groups = df.groupBy([desirability.name]).getGroups() as any;
+  let desired: DG.DataFrame;
+  let nonDesired: DG.DataFrame;
+
+  for (const name in groups) {
+    if (name.toLowerCase().includes('true'))
+      desired = groups[name];
+    else
+      nonDesired = groups[name];
+  }
+
+  //@ts-ignore
+  return {desired, nonDesired};
+} // getDesiredTables
+
+/* Welch two-sample t-test (two-sided) */
+export function getDescriptorStatistics(des: DG.Column, nonDes: DG.Column): DescriptorStatistics {
+  const desLen = des.length;
+  const nonDesLen = nonDes.length;
+  if (desLen < 2 || nonDesLen < 2) {
+    throw new Error(`Failed to compute the "${des.name}" descriptor statistics: 
+      both samples must have at least two observations.`);
+  }
+
+  const desAvg = des.stats.avg;
+  const nonDesAvg = nonDes.stats.avg;
+  const desVar = des.stats.variance;
+  const nonDesVar = nonDes.stats.variance;
+  const desStd = des.stats.stdev;
+  const nonDesStd = nonDes.stats.stdev;
+
+  const se = Math.sqrt(desVar / desLen + nonDesVar / nonDesLen);
+  if (se === 0) {
+    throw new Error(`Failed to compute the "${des.name}" descriptor statistics: 
+      zero variance.`);
+  }
+
+  const t = (desAvg - nonDesAvg) / se;
+
+  // Welch–Satterthwaite degrees of freedom
+  const numerator = (desVar / desLen + nonDesVar / nonDesLen) ** 2;
+  const denom = (desVar * desVar) / (desLen * desLen * (desLen - 1)) +
+    (nonDesVar * nonDesVar) / (nonDesLen * nonDesLen * (nonDesLen - 1));
+  const df = numerator / denom;
+
+  // two-sided p-value
+  const cdf = jStat.studentt.cdf(Math.abs(t), df);
+  const pValue = 2 * (1 - cdf);
+
+  return {
+    desAvg: desAvg,
+    desStd: desStd,
+    desLen: desLen,
+    nonDesAvg: nonDesAvg,
+    nonDesStd: nonDesStd,
+    nonSesLen: nonDesLen,
+    tstat: t,
+    pValue: pValue,
+  };
+} // getDescriptorStatistics
+
+/** Compute cutoffs for the pMPO method */
+export function getCutoffs(muDesired: number, stdDesired: number, muNotDesired: number,
+  stdNotDesired: number): Cutoff {
+  if (muDesired < muNotDesired) {
+    return {
+      cutoff: ((muNotDesired - muDesired) / (stdDesired + stdNotDesired)) * stdDesired + muDesired,
+      cutoffDesired: Math.max(muDesired, muNotDesired - stdNotDesired),
+      cutoffNotDesired: Math.max(muDesired + stdDesired, muNotDesired),
+    };
+  } else {
+    return {
+      cutoff: ((muDesired - muNotDesired) / (stdDesired + stdNotDesired)) * stdNotDesired + muNotDesired,
+      cutoffDesired: Math.min(muNotDesired + stdNotDesired, muDesired),
+      cutoffNotDesired: Math.max(muNotDesired, muDesired - stdDesired),
+    };
+  }
+} // getCutoffs
+
+/** Solve normal intersection for the pMPO method */
+export function solveNormalIntersection(mu1: number, s1: number, mu2: number, s2: number): number[] {
+  const a = 1 / (2 * s1 ** 2) - 1 / (2 * s2 ** 2);
+  const b = mu2 / (s2 ** 2) - mu1 / (s1 ** 2);
+  const c = (mu1 ** 2) / (2 * s1 ** 2) - (mu2 ** 2) / (2 * s2 ** 2) - Math.log(s2 / s1);
+
+  // If a is nearly zero, solve linear equation
+  if (Math.abs(a) < 1e-12) {
+    if (Math.abs(b) < 1e-12) return [];
+    return [-c / b];
+  }
+
+  const disc = b * b - 4 * a * c;
+  if (disc < 0) return [];
+
+  const sqrtDisc = Math.sqrt(disc);
+  const x1 = (-b + sqrtDisc) / (2 * a);
+  const x2 = (-b - sqrtDisc) / (2 * a);
+
+  return [x1, x2];
+} // solveNormalIntersection
+
+/** Compute sigmoid parameters for the pMPO method */
+export function computeSigmoidParamsFromX0(muDes: number, sigmaDes: number, x0: number, xBound: number,
+  qCutoff: number = 0.05): SigmoidParams {
+  let pX0: number;
+
+  if (sigmaDes <= 0)
+    pX0 = x0 === muDes ? 1.0 : 0.0;
+  else {
+    // normal pdf
+    const coef = 1 / (sigmaDes * Math.sqrt(2 * Math.PI));
+    const exponent = -0.5 * ((x0 - muDes) / sigmaDes) ** 2;
+    pX0 = coef * Math.exp(exponent);
+  }
+
+  const eps = 1e-12;
+  pX0 = Math.max(pX0, eps);
+
+  const b = Math.max(1.0 / pX0 - 1.0, eps);
+  const n = 1.0 / qCutoff - 1.0;
+  const dx = xBound - x0;
+
+  let c: number;
+  if (Math.abs(dx) < 1e-12)
+    c = 1.0;
+  else {
+    const ratio = n / b;
+    if (ratio <= 0)
+      c = 1.0;
+    else {
+      try {
+        c = Math.exp(-Math.log(ratio) / dx);
+      } catch {
+        c = 1.0;
+      }
+    }
+  }
+
+  return {pX0: pX0, b: b, c: c};
+} // computeSigmoidParamsFromX0
+
+/** Generalized sigmoid function */
+export function sigmoidS(x: number, x0: number, b: number, c: number): number {
+  if (c > 0)
+    return 1.0 / (1.0 + b * (c ** (-(x - x0))));
+  return 1.0/(1.0 + b);
+}
+
+/** Normal probability density function */
+export function normalPdf(x: number, mu: number, sigma: number): number {
+  return Math.exp(-((x - mu)**2) / (2 * sigma**2)) / (sigma * SQRT_2_PI);
+}

package/src/softmax-classifier.ts

@@ -1,4 +1,4 @@
-// Softmax classifier (multinomial logistic regression): https://en.wikipedia.org/wiki/Multinomial_logistic_regression
+/* Softmax classifier (multinomial logistic regression): https://en.wikipedia.org/wiki/Multinomial_logistic_regression */
 
 import * as grok from 'datagrok-api/grok';
 import * as ui from 'datagrok-api/ui';

package/test-console-output-1.log

@@ -1,15 +1,15 @@
-CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Eda/1.4.11.X-9f4e826c/792lJVXXPFNhk4bruMxhytSnje1BWPpn/1/wasm/EDA.js
-CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Eda/1.4.11.X-9f4e826c/792lJVXXPFNhk4bruMxhytSnje1BWPpn/1/wasm/XGBoostAPI.js
-CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Eda/1.4.11.X-9f4e826c/792lJVXXPFNhk4bruMxhytSnje1BWPpn/1/dist/package.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Eda/1.4.12.X-0bb23fb6/lSDvPtCZGPseNDVJDVtZGFAyaLpPfIvf/1/wasm/EDA.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Eda/1.4.12.X-0bb23fb6/lSDvPtCZGPseNDVJDVtZGFAyaLpPfIvf/1/wasm/XGBoostAPI.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Eda/1.4.12.X-0bb23fb6/lSDvPtCZGPseNDVJDVtZGFAyaLpPfIvf/1/dist/package.js
 CONSOLE LOG ENTRY: Wasm not Loaded, Loading
-CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Eda/1.4.11.X-9f4e826c/792lJVXXPFNhk4bruMxhytSnje1BWPpn/1/wasm/EDA.wasm
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Eda/1.4.12.X-0bb23fb6/lSDvPtCZGPseNDVJDVtZGFAyaLpPfIvf/1/wasm/EDA.wasm
 CONSOLE LOG ENTRY: XGBoost not Loaded, Loading
-CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Eda/1.4.11.X-9f4e826c/792lJVXXPFNhk4bruMxhytSnje1BWPpn/1/wasm/XGBoostAPI.wasm
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 CONSOLE LOG REQUEST: 200, http://localhost:8080/font/Roboto-LightItalic.woff2
-CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Eda/1.4.11.X-9f4e826c/792lJVXXPFNhk4bruMxhytSnje1BWPpn/1/dist/package-test.js
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Eda/1.4.12.X-0bb23fb6/lSDvPtCZGPseNDVJDVtZGFAyaLpPfIvf/1/wasm/XGBoostAPI.wasm
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Eda/1.4.12.X-0bb23fb6/lSDvPtCZGPseNDVJDVtZGFAyaLpPfIvf/1/dist/package-test.js
 CONSOLE LOG ENTRY: --------------------
-CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/funcs?text=package.id%2520%253D%2520%2522c2b25ac0-ac70-11f0-9bed-4bea48a360cf%2522
+CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/funcs?text=package.id%2520%253D%2520%25223e22bef0-d380-11f0-b7b7-95cca6565c2a%2522
 CONSOLE LOG ENTRY: Running tests
 CONSOLE LOG ENTRY: JSHandle@object
 CONSOLE LOG ENTRY: Started ANOVA category
@@ -24,7 +24,7 @@ CONSOLE LOG ENTRY: JSHandle@object
 CONSOLE LOG ENTRY: Started ANOVA category
 CONSOLE LOG ENTRY: O false
 CONSOLE LOG ENTRY: Started ANOVA Performance: 1M rows demog
-CONSOLE LOG ENTRY: Finished ANOVA Performance: 1M rows demog for 1930 ms
+CONSOLE LOG ENTRY: Finished ANOVA Performance: 1M rows demog for 1958 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG ENTRY: --------------------
@@ -38,10 +38,10 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/images/entities/view_layout.svg
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/scatter-plot.md
 CONSOLE LOG REQUEST: 404, http://localhost:8080/uploads/youtube/visualizations2.png
 CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
-CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-regression-line.png
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-colors-sizes-markers-labels-thumb.png
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-zoom-and-pack-thumb.png
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-selection-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-regression-line.png
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/%7Brequire('./img/formula-lines-thumb.png').default%7D
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/group-tooltip-thumb.png
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-labels-thumb.png
@@ -49,8 +49,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatt
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-lines.png
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/viewers/scatter-plot-molecules.png
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/webgpu-scatterplot-thumb.png
-CONSOLE LOG ENTRY: distances to matrix: 22.06689453125 ms
-CONSOLE LOG ENTRY: Finished Dimensionality reduction: T-SNE All demog columns for 1284 ms
+CONSOLE LOG ENTRY: distances to matrix: 15.921875 ms
+CONSOLE LOG ENTRY: Finished Dimensionality reduction: T-SNE All demog columns for 1310 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/datagrok.md
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
@@ -61,11 +61,11 @@ CONSOLE LOG ENTRY: Started Dimensionality reduction: T-SNE category
 CONSOLE LOG ENTRY: O false
 CONSOLE LOG ENTRY: Started Dimensionality reduction: T-SNE Numeric and string columns
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/scatter-plot.md
-CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/%7Brequire('./img/formula-lines-thumb.png').default%7D
 CONSOLE LOG REQUEST: 404, http://localhost:8080/uploads/youtube/visualizations2.png
 CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
-CONSOLE LOG ENTRY: distances to matrix: 22.4599609375 ms
-CONSOLE LOG ENTRY: Finished Dimensionality reduction: T-SNE Numeric and string columns for 1568 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/%7Brequire('./img/formula-lines-thumb.png').default%7D
+CONSOLE LOG ENTRY: distances to matrix: 35.132080078125 ms
+CONSOLE LOG ENTRY: Finished Dimensionality reduction: T-SNE Numeric and string columns for 1502 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/datagrok.md
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
@@ -76,11 +76,11 @@ CONSOLE LOG ENTRY: Started Dimensionality reduction: T-SNE category
 CONSOLE LOG ENTRY: O false
 CONSOLE LOG ENTRY: Started Dimensionality reduction: T-SNE Numeric column
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/scatter-plot.md
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/%7Brequire('./img/formula-lines-thumb.png').default%7D
 CONSOLE LOG REQUEST: 404, http://localhost:8080/uploads/youtube/visualizations2.png
 CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
-CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/%7Brequire('./img/formula-lines-thumb.png').default%7D
-CONSOLE LOG ENTRY: distances to matrix: 22.8359375 ms
-CONSOLE LOG ENTRY: Finished Dimensionality reduction: T-SNE Numeric column for 1290 ms
+CONSOLE LOG ENTRY: distances to matrix: 19.68505859375 ms
+CONSOLE LOG ENTRY: Finished Dimensionality reduction: T-SNE Numeric column for 1390 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/datagrok.md
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
@@ -94,8 +94,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/scatter-p
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/%7Brequire('./img/formula-lines-thumb.png').default%7D
 CONSOLE LOG REQUEST: 404, http://localhost:8080/uploads/youtube/visualizations2.png
 CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
-CONSOLE LOG ENTRY: distances to matrix: 21.385009765625 ms
-CONSOLE LOG ENTRY: Finished Dimensionality reduction: T-SNE String column for 1332 ms
+CONSOLE LOG ENTRY: distances to matrix: 20.2158203125 ms
+CONSOLE LOG ENTRY: Finished Dimensionality reduction: T-SNE String column for 1128 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/datagrok.md
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
@@ -109,11 +109,11 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/scatter-p
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/%7Brequire('./img/formula-lines-thumb.png').default%7D
 CONSOLE LOG REQUEST: 404, http://localhost:8080/uploads/youtube/visualizations2.png
 CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
-CONSOLE LOG ENTRY: knn graph: 57.19091796875 ms
+CONSOLE LOG ENTRY: knn graph: 74.40283203125 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/font/Roboto-Italic.woff2
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/concepts/table.md
-CONSOLE LOG ENTRY: fit: 4307.052001953125 ms
-CONSOLE LOG ENTRY: Finished Dimensionality reduction: UMAP All demog columns for 5784 ms
+CONSOLE LOG ENTRY: fit: 3886.34619140625 ms
+CONSOLE LOG ENTRY: Finished Dimensionality reduction: UMAP All demog columns for 5291 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/datagrok.md
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
@@ -124,13 +124,23 @@ CONSOLE LOG ENTRY: Started Dimensionality reduction: UMAP category
 CONSOLE LOG ENTRY: O false
 CONSOLE LOG ENTRY: Started Dimensionality reduction: UMAP Numeric and string columns
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/scatter-plot.md
-CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/%7Brequire('./img/formula-lines-thumb.png').default%7D
 CONSOLE LOG REQUEST: 404, http://localhost:8080/uploads/youtube/visualizations2.png
 CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
-CONSOLE LOG ENTRY: knn graph: 53.663818359375 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/%7Brequire('./img/formula-lines-thumb.png').default%7D
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-colors-sizes-markers-labels-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-zoom-and-pack-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-selection-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-regression-line.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/group-tooltip-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-labels-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-jitter-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-lines.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/viewers/scatter-plot-molecules.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/webgpu-scatterplot-thumb.png
+CONSOLE LOG ENTRY: knn graph: 47.72412109375 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/concepts/table.md
-CONSOLE LOG ENTRY: fit: 2660.208984375 ms
-CONSOLE LOG ENTRY: Finished Dimensionality reduction: UMAP Numeric and string columns for 4215 ms
+CONSOLE LOG ENTRY: fit: 2789.14306640625 ms
+CONSOLE LOG ENTRY: Finished Dimensionality reduction: UMAP Numeric and string columns for 4225 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/datagrok.md
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
@@ -141,13 +151,23 @@ CONSOLE LOG ENTRY: Started Dimensionality reduction: UMAP category
 CONSOLE LOG ENTRY: O false
 CONSOLE LOG ENTRY: Started Dimensionality reduction: UMAP Numeric column
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/scatter-plot.md
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/%7Brequire('./img/formula-lines-thumb.png').default%7D
 CONSOLE LOG REQUEST: 404, http://localhost:8080/uploads/youtube/visualizations2.png
 CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
-CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/%7Brequire('./img/formula-lines-thumb.png').default%7D
-CONSOLE LOG ENTRY: knn graph: 52.426025390625 ms
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-colors-sizes-markers-labels-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-zoom-and-pack-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-selection-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-regression-line.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/group-tooltip-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-labels-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-jitter-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-lines.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/viewers/scatter-plot-molecules.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/webgpu-scatterplot-thumb.png
+CONSOLE LOG ENTRY: knn graph: 33.509033203125 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/concepts/table.md
-CONSOLE LOG ENTRY: fit: 2797.072021484375 ms
-CONSOLE LOG ENTRY: Finished Dimensionality reduction: UMAP Numeric column for 4192 ms
+CONSOLE LOG ENTRY: fit: 2949.89599609375 ms
+CONSOLE LOG ENTRY: Finished Dimensionality reduction: UMAP Numeric column for 4358 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/datagrok.md
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
@@ -158,13 +178,23 @@ CONSOLE LOG ENTRY: Started Dimensionality reduction: UMAP category
 CONSOLE LOG ENTRY: O false
 CONSOLE LOG ENTRY: Started Dimensionality reduction: UMAP String column
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/scatter-plot.md
-CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/%7Brequire('./img/formula-lines-thumb.png').default%7D
-CONSOLE LOG REQUEST: 404, http://localhost:8080/uploads/youtube/visualizations2.png
 CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
-CONSOLE LOG ENTRY: knn graph: 43.06787109375 ms
+CONSOLE LOG REQUEST: 404, http://localhost:8080/uploads/youtube/visualizations2.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/%7Brequire('./img/formula-lines-thumb.png').default%7D
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-colors-sizes-markers-labels-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-zoom-and-pack-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-selection-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-regression-line.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/group-tooltip-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-labels-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-jitter-thumb.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-lines.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/viewers/scatter-plot-molecules.png
+CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/webgpu-scatterplot-thumb.png
+CONSOLE LOG ENTRY: knn graph: 94.2939453125 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/concepts/table.md
-CONSOLE LOG ENTRY: fit: 3788.18798828125 ms
-CONSOLE LOG ENTRY: Finished Dimensionality reduction: UMAP String column for 5247 ms
+CONSOLE LOG ENTRY: fit: 4225.9560546875 ms
+CONSOLE LOG ENTRY: Finished Dimensionality reduction: UMAP String column for 5704 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/datagrok.md
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
@@ -183,7 +213,7 @@ CONSOLE LOG ENTRY: JSHandle@object
 CONSOLE LOG ENTRY: Started Linear regression category
 CONSOLE LOG ENTRY: O false
 CONSOLE LOG ENTRY: Started Linear regression Performance: 100K samples, 100 features
-CONSOLE LOG ENTRY: Finished Linear regression Performance: 100K samples, 100 features for 2516 ms
+CONSOLE LOG ENTRY: Finished Linear regression Performance: 100K samples, 100 features for 2391 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG ENTRY: --------------------
@@ -192,7 +222,7 @@ CONSOLE LOG ENTRY: JSHandle@object
 CONSOLE LOG ENTRY: Started Missing values imputation category
 CONSOLE LOG ENTRY: O false
 CONSOLE LOG ENTRY: Started Missing values imputation Euclidean dist, 100K rows, 15 cols, 75 missing vals
-CONSOLE LOG ENTRY: Finished Missing values imputation Euclidean dist, 100K rows, 15 cols, 75 missing vals for 5845 ms
+CONSOLE LOG ENTRY: Finished Missing values imputation Euclidean dist, 100K rows, 15 cols, 75 missing vals for 5650 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG ENTRY: --------------------
@@ -201,7 +231,7 @@ CONSOLE LOG ENTRY: JSHandle@object
 CONSOLE LOG ENTRY: Started Missing values imputation category
 CONSOLE LOG ENTRY: O false
 CONSOLE LOG ENTRY: Started Missing values imputation Manhattan dist, 100K rows, 15 cols, 75 missing vals
-CONSOLE LOG ENTRY: Finished Missing values imputation Manhattan dist, 100K rows, 15 cols, 75 missing vals for 5807 ms
+CONSOLE LOG ENTRY: Finished Missing values imputation Manhattan dist, 100K rows, 15 cols, 75 missing vals for 5531 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG ENTRY: --------------------
@@ -219,7 +249,7 @@ CONSOLE LOG ENTRY: JSHandle@object
 CONSOLE LOG ENTRY: Started Partial least squares regression category
 CONSOLE LOG ENTRY: O false
 CONSOLE LOG ENTRY: Started Partial least squares regression Performance: 100K rows, 100 cols, 3 components
-CONSOLE LOG ENTRY: Finished Partial least squares regression Performance: 100K rows, 100 cols, 3 components for 1783 ms
+CONSOLE LOG ENTRY: Finished Partial least squares regression Performance: 100K rows, 100 cols, 3 components for 1720 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG ENTRY: --------------------
@@ -228,7 +258,7 @@ CONSOLE LOG ENTRY: JSHandle@object
 CONSOLE LOG ENTRY: Started Partial least squares regression category
 CONSOLE LOG ENTRY: O false
 CONSOLE LOG ENTRY: Started Partial least squares regression Predictive modeling: 100K samples, 100 features, 3 components
-CONSOLE LOG ENTRY: Finished Partial least squares regression Predictive modeling: 100K samples, 100 features, 3 components for 1583 ms
+CONSOLE LOG ENTRY: Finished Partial least squares regression Predictive modeling: 100K samples, 100 features, 3 components for 1590 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG ENTRY: --------------------
@@ -237,7 +267,7 @@ CONSOLE LOG ENTRY: JSHandle@object
 CONSOLE LOG ENTRY: Started Principal component analysis category
 CONSOLE LOG ENTRY: O false
 CONSOLE LOG ENTRY: Started Principal component analysis Correctness
-CONSOLE LOG ENTRY: Finished Principal component analysis Correctness for 19 ms
+CONSOLE LOG ENTRY: Finished Principal component analysis Correctness for 22 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG ENTRY: --------------------
@@ -246,7 +276,7 @@ CONSOLE LOG ENTRY: JSHandle@object
 CONSOLE LOG ENTRY: Started Principal component analysis category
 CONSOLE LOG ENTRY: O false
 CONSOLE LOG ENTRY: Started Principal component analysis Performance: 100K rows, 100 cols, 3 components
-CONSOLE LOG ENTRY: Finished Principal component analysis Performance: 100K rows, 100 cols, 3 components for 3820 ms
+CONSOLE LOG ENTRY: Finished Principal component analysis Performance: 100K rows, 100 cols, 3 components for 3646 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG ENTRY: --------------------
@@ -255,7 +285,7 @@ CONSOLE LOG ENTRY: JSHandle@object
 CONSOLE LOG ENTRY: Started Principal component analysis category
 CONSOLE LOG ENTRY: O false
 CONSOLE LOG ENTRY: Started Principal component analysis Performance: 1K rows, 5K cols, 3 components
-CONSOLE LOG ENTRY: Finished Principal component analysis Performance: 1K rows, 5K cols, 3 components for 3767 ms
+CONSOLE LOG ENTRY: Finished Principal component analysis Performance: 1K rows, 5K cols, 3 components for 3725 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG ENTRY: --------------------
@@ -264,7 +294,7 @@ CONSOLE LOG ENTRY: JSHandle@object
 CONSOLE LOG ENTRY: Started Softmax category
 CONSOLE LOG ENTRY: O false
 CONSOLE LOG ENTRY: Started Softmax Correctness
-CONSOLE LOG ENTRY: Finished Softmax Correctness for 7 ms
+CONSOLE LOG ENTRY: Finished Softmax Correctness for 6 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG ENTRY: --------------------
@@ -273,7 +303,7 @@ CONSOLE LOG ENTRY: JSHandle@object
 CONSOLE LOG ENTRY: Started Softmax category
 CONSOLE LOG ENTRY: O false
 CONSOLE LOG ENTRY: Started Softmax Performance: 50K samples, 100 features
-CONSOLE LOG ENTRY: Finished Softmax Performance: 50K samples, 100 features for 2509 ms
+CONSOLE LOG ENTRY: Finished Softmax Performance: 50K samples, 100 features for 2637 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG ENTRY: --------------------
@@ -282,7 +312,7 @@ CONSOLE LOG ENTRY: JSHandle@object
 CONSOLE LOG ENTRY: Started XGBoost category
 CONSOLE LOG ENTRY: O false
 CONSOLE LOG ENTRY: Started XGBoost Correctness
-CONSOLE LOG ENTRY: Finished XGBoost Correctness for 193 ms
+CONSOLE LOG ENTRY: Finished XGBoost Correctness for 213 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG ENTRY: --------------------
@@ -291,6 +321,6 @@ CONSOLE LOG ENTRY: JSHandle@object
 CONSOLE LOG ENTRY: Started XGBoost category
 CONSOLE LOG ENTRY: O false
 CONSOLE LOG ENTRY: Started XGBoost Performance: 50K samples, 100 features
-CONSOLE LOG ENTRY: Finished XGBoost Performance: 50K samples, 100 features for 1850 ms
+CONSOLE LOG ENTRY: Finished XGBoost Performance: 50K samples, 100 features for 2233 ms
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
 CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false