@datagrok/eda 1.4.10 → 1.4.11
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +15 -0
- package/README.md +2 -0
- package/css/pareto.css +5 -0
- package/dist/package.js +1 -1
- package/dist/package.js.map +1 -1
- package/icons/pareto-front-viewer.svg +15 -0
- package/package.json +1 -1
- package/src/package-api.ts +14 -0
- package/src/package.g.ts +16 -0
- package/src/package.ts +221 -244
- package/src/pareto-optimization/defs.ts +45 -0
- package/src/pareto-optimization/pareto-computations.ts +65 -0
- package/src/pareto-optimization/pareto-front-viewer.ts +490 -0
- package/src/pareto-optimization/pareto-optimizer.ts +272 -0
- package/src/pareto-optimization/utils.ts +39 -0
- package/test-console-output-1.log +46 -56
- package/test-record-1.mp4 +0 -0
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import * as grok from 'datagrok-api/grok';
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import * as ui from 'datagrok-api/ui';
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import * as DG from 'datagrok-api/dg';
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import '../../css/pareto.css';
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import {NumericFeature, OPT_TYPE, DIFFERENCE, RATIO, COL_NAME, PC_MAX_COLS, ColorOpt} from './defs';
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import {getColorScaleDiv, getOutputPalette} from './utils';
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/** Pareto front optimization app */
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export class ParetoOptimizer {
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private df: DG.DataFrame;
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private numCols: DG.Column[];
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private numColNames: string[] = [];
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private numColsCount: number;
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private rowCount: number;
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private features = new Map<string, NumericFeature>();
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private view: DG.TableView;
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private pcPlot: DG.Viewer<DG.IPcPlotSettings>;
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private toUpdatePcCols = false;
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private paretoFrontViewer: DG.Viewer;
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private resultColName: string;
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private intervalId: NodeJS.Timeout | null = null;
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private inputsMap = new Map<string, DG.InputBase>();
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private pcPlotNode: DG.DockNode | null = null;
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private inputFormNode: DG.DockNode | null = null;
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private toChangeParetoViewerOptions = true;
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constructor(df: DG.DataFrame) {
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this.df = df;
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const cols = df.columns;
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const colList = cols.toList();
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this.numCols = colList.filter((col) => col.isNumerical);
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this.numColNames = this.numCols.map((col) => col.name);
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this.numColsCount = this.numCols.length;
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this.rowCount = df.rowCount;
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this.view = grok.shell.getTableView(df.name);
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this.paretoFrontViewer = DG.Viewer.fromType('Pareto front', df);
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const paretoFrontViewerNode = this.view.dockManager.dock(
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this.paretoFrontViewer,
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DG.DOCK_TYPE.RIGHT,
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null,
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undefined,
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RATIO.VIEWER,
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);
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this.pcPlot = DG.Viewer.pcPlot(df, {legendPosition: 'Top'});
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const gridNode = this.view.dockManager.findNode(this.view.grid.root) ?? paretoFrontViewerNode;
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this.pcPlotNode = this.view.dockManager.dock(this.pcPlot, DG.DOCK_TYPE.DOWN, gridNode, undefined, RATIO.VIEWER);
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this.toUpdatePcCols = this.numColNames.length > PC_MAX_COLS;
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this.resultColName = this.df.columns.getUnusedName(COL_NAME.OPT);
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this.showResultOptCol();
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this.view.subs.push(...this.getSubscriptions());
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} // constructor
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private isApplicable(): boolean {
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if (this.rowCount < 1) {
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grok.shell.warning('Cannot compute Pareto front: the table is empty.');
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return false;
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}
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if (this.numColsCount < 2) {
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grok.shell.warning('Cannot compute Pareto front: at least two numeric columns are required.');
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return false;
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}
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return true;
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} // isApplicable
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public run(): void {
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if (!this.isApplicable())
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return;
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this.buildInputsForm();
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this.computeParetoFront();
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this.updateVisualization();
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} // run
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private getSubscriptions() {
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return [
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this.paretoFrontViewer.onDetached.subscribe(() => {
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if (this.pcPlotNode !== null) {
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this.view.dockManager.close(this.pcPlotNode);
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this.pcPlotNode = null;
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}
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if (this.inputFormNode !== null) {
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this.view.dockManager.close(this.inputFormNode);
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this.inputFormNode = null;
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}
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this.numCols.forEach((col) => col.colors.setDisabled());
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this.features.clear();
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}),
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];
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} // getSubscriptions
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private buildInputsForm(): void {
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const form = ui.form([]);
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form.classList.add('pareto-input-form');
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form.append(ui.h1('Optimize'));
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this.numCols.forEach((col, idx) => {
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const feature: NumericFeature = {
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toOptimize: this.numColsCount - idx - 1 < DIFFERENCE,
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optType: OPT_TYPE.MIN,
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};
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const name = col.name;
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const optimizationTypeInput = ui.input.choice(name, {
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value: feature.toOptimize ? feature.optType : null,
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nullable: true,
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items: [null, OPT_TYPE.MIN, OPT_TYPE.MAX],
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onValueChanged: (val) => {
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if (val == null)
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feature.toOptimize = false;
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else {
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feature.toOptimize = true;
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feature.optType = val;
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}
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this.computeParetoFront();
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this.updateVisualization();
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},
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});
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ui.tooltip.bind(optimizationTypeInput.input, () => {
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if (feature.toOptimize)
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return ui.markdown(`M${feature.optType.slice(1)} **${name}** during Pareto optimization`);
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return ui.markdown(`Ignore **${name}** during Pareto optimization`);
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});
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this.inputsMap.set(name, optimizationTypeInput);
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form.append(optimizationTypeInput.root);
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this.features.set(name, feature);
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});
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this.inputFormNode = this.view.dockManager.dock(form, DG.DOCK_TYPE.LEFT, null, undefined, RATIO.FORM);
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} // buildInputsForm
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private computeParetoFront(): void {
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if (!this.toChangeParetoViewerOptions)
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return;
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const featureNames = this.getMinMaxFeatureNames();
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this.paretoFrontViewer.setOptions({
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minimizeColumnNames: featureNames.toMin,
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maximizeColumnNames: featureNames.toMax,
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});
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} // computeParetoFront
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private updatePcPlot(colNames: string[], colorOpt: ColorOpt): void {
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this.pcPlot.setOptions(colorOpt);
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// update value columns: check that optimized cols are included
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if (this.toUpdatePcCols) {
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const prevColNames = this.pcPlot.getOptions().look['columnNames'];
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let toUpdatePcPlotColNames = false;
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colNames.forEach((name) => {
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if (!prevColNames.includes(name))
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toUpdatePcPlotColNames = true;
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});
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if (toUpdatePcPlotColNames) {
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const valColNames = [...colNames];
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const notIncluded = this.numColNames.filter((name) => !valColNames.includes(name));
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valColNames.push(...notIncluded.slice(0, PC_MAX_COLS - colNames.length));
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this.pcPlot.setOptions({columnNames: valColNames});
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}
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}
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} // updatePcPlot
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private updateVisualization(): void {
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const colNames: string[] = [];
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this.features.forEach((fea, name) => {
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if (fea.toOptimize)
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colNames.push(name);
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});
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const colorOpt: ColorOpt = {'colorColumnName': (colNames.length > 0) ? this.resultColName: undefined};
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this.updatePcPlot(colNames, colorOpt);
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this.markOptColsWithColor();
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this.updateTooltips();
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} // updateVisualization
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private showResultOptCol(): void {
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// show a column with the results, once it is added
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this.intervalId = setInterval(() => {
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const gridCol = this.view.grid.columns.byName(this.resultColName);
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if (gridCol !== null) {
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gridCol.visible = true;
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this.stopChecking();
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}
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}, 1000);
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} // showResultOptCol
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private stopChecking(): void {
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if (this.intervalId) {
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clearInterval(this.intervalId);
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this.intervalId = null;
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}
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}
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private markOptColsWithColor(): void {
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this.numCols.forEach((col) => col.colors.setDisabled());
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this.features.forEach((fea, name) => {
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if (!fea.toOptimize)
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return;
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const col = this.df.col(name);
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if (col != null)
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col.colors.setLinear(getOutputPalette(fea.optType), {min: col.stats.min, max: col.stats.max});
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});
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} // markOptColsWithColor
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private updateTooltips(): void {
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const features = this.features;
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this.view.grid.onCellTooltip(function(cell, x, y) {
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if (cell.isColHeader) {
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const cellCol = cell.tableColumn;
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if (cellCol) {
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const name = cell.tableColumn.name;
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const feature = features.get(name);
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if (feature !== undefined) {
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const elems = [ui.markdown(`**${name}**`)];
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if (feature.toOptimize) {
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elems.push(ui.markdown(`This feature is **${feature.optType}d** during Pareto optimization.`));
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elems.push(getColorScaleDiv(feature.optType));
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}
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ui.tooltip.show(ui.divV(elems), x, y);
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return true;
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}
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return false;
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}
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}
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});
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} // updateTooltips
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private getMinMaxFeatureNames() {
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const minimizeColumnNames: string[] = [];
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const maximizeColumnNames: string[] = [];
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this.features.forEach((fea, name) => {
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if (fea.toOptimize) {
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if (fea.optType === OPT_TYPE.MIN)
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minimizeColumnNames.push(name);
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else
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maximizeColumnNames.push(name);
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}
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});
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return {toMin: minimizeColumnNames, toMax: maximizeColumnNames};
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}
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} // ParetoOptimizer
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import * as grok from 'datagrok-api/grok';
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import * as ui from 'datagrok-api/ui';
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import * as DG from 'datagrok-api/dg';
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import {OPT_TYPE} from './defs';
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export const PALETTE = [DG.Color.darkGreen, DG.Color.yellow, DG.Color.darkRed];
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export function getOutputPalette(type: OPT_TYPE): number[] {
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if (type === OPT_TYPE.MIN)
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return [...PALETTE];
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return [...PALETTE].reverse();
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}
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export function getColorScaleDiv(type: OPT_TYPE): HTMLElement {
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const scale = ui.label('Color scale:');
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scale.style.paddingRight = '7px';
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const elems = [scale];
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const minLbl = ui.label('min');
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const midLbl = ui.label('. . .');
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const maxLbl = ui.label('max');
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const palette = getOutputPalette(type);
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const colorElems = [minLbl, midLbl, maxLbl].map((el, idx) => {
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if (idx !== 1) {
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el.style.fontWeight = 'bold';
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el.style.color = DG.Color.toRgb(palette[idx]);
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}
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el.style.marginRight = '5px';
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return el;
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});
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elems.push(...colorElems);
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return ui.divH(elems);
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}
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@@ -1,15 +1,15 @@
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1
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CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Eda/1.4.
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CONSOLE LOG ENTRY: Finished Missing values imputation Euclidean dist, 100K rows, 15 cols, 75 missing vals for
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+
CONSOLE LOG ENTRY: Finished Missing values imputation Euclidean dist, 100K rows, 15 cols, 75 missing vals for 5845 ms
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CONSOLE LOG ENTRY: --------------------
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@@ -211,7 +201,7 @@ CONSOLE LOG ENTRY: JSHandle@object
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CONSOLE LOG ENTRY: Started Missing values imputation category
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CONSOLE LOG ENTRY: O false
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CONSOLE LOG ENTRY: Started Missing values imputation Manhattan dist, 100K rows, 15 cols, 75 missing vals
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CONSOLE LOG ENTRY: Finished Missing values imputation Manhattan dist, 100K rows, 15 cols, 75 missing vals for
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CONSOLE LOG ENTRY: Finished Missing values imputation Manhattan dist, 100K rows, 15 cols, 75 missing vals for 5807 ms
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CONSOLE LOG ENTRY: --------------------
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@@ -220,7 +210,7 @@ CONSOLE LOG ENTRY: JSHandle@object
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CONSOLE LOG ENTRY: Started Partial least squares regression category
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CONSOLE LOG ENTRY: O false
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CONSOLE LOG ENTRY: Started Partial least squares regression Correctness
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CONSOLE LOG ENTRY: Finished Partial least squares regression Correctness for
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CONSOLE LOG ENTRY: Finished Partial least squares regression Correctness for 38 ms
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CONSOLE LOG ENTRY: --------------------
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@@ -229,7 +219,7 @@ CONSOLE LOG ENTRY: JSHandle@object
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CONSOLE LOG ENTRY: Started Partial least squares regression category
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CONSOLE LOG ENTRY: O false
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CONSOLE LOG ENTRY: Started Partial least squares regression Performance: 100K rows, 100 cols, 3 components
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CONSOLE LOG ENTRY: Finished Partial least squares regression Performance: 100K rows, 100 cols, 3 components for
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CONSOLE LOG ENTRY: Finished Partial least squares regression Performance: 100K rows, 100 cols, 3 components for 1783 ms
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CONSOLE LOG ENTRY: --------------------
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@@ -238,7 +228,7 @@ CONSOLE LOG ENTRY: JSHandle@object
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CONSOLE LOG ENTRY: Started Partial least squares regression category
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CONSOLE LOG ENTRY: O false
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CONSOLE LOG ENTRY: Started Partial least squares regression Predictive modeling: 100K samples, 100 features, 3 components
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CONSOLE LOG ENTRY: Finished Partial least squares regression Predictive modeling: 100K samples, 100 features, 3 components for
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CONSOLE LOG ENTRY: Finished Partial least squares regression Predictive modeling: 100K samples, 100 features, 3 components for 1583 ms
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CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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CONSOLE LOG ENTRY: --------------------
|
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@@ -256,7 +246,7 @@ CONSOLE LOG ENTRY: JSHandle@object
|
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CONSOLE LOG ENTRY: Started Principal component analysis category
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CONSOLE LOG ENTRY: O false
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CONSOLE LOG ENTRY: Started Principal component analysis Performance: 100K rows, 100 cols, 3 components
|
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CONSOLE LOG ENTRY: Finished Principal component analysis Performance: 100K rows, 100 cols, 3 components for
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CONSOLE LOG ENTRY: Finished Principal component analysis Performance: 100K rows, 100 cols, 3 components for 3820 ms
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CONSOLE LOG ENTRY: --------------------
|
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@@ -265,7 +255,7 @@ CONSOLE LOG ENTRY: JSHandle@object
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CONSOLE LOG ENTRY: Started Principal component analysis category
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CONSOLE LOG ENTRY: O false
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CONSOLE LOG ENTRY: Started Principal component analysis Performance: 1K rows, 5K cols, 3 components
|
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CONSOLE LOG ENTRY: Finished Principal component analysis Performance: 1K rows, 5K cols, 3 components for
|
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CONSOLE LOG ENTRY: Finished Principal component analysis Performance: 1K rows, 5K cols, 3 components for 3767 ms
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CONSOLE LOG ENTRY: --------------------
|
|
@@ -274,7 +264,7 @@ CONSOLE LOG ENTRY: JSHandle@object
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|
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CONSOLE LOG ENTRY: Started Softmax category
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CONSOLE LOG ENTRY: O false
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CONSOLE LOG ENTRY: Started Softmax Correctness
|
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CONSOLE LOG ENTRY: Finished Softmax Correctness for
|
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+
CONSOLE LOG ENTRY: Finished Softmax Correctness for 7 ms
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CONSOLE LOG ENTRY: --------------------
|
|
@@ -283,7 +273,7 @@ CONSOLE LOG ENTRY: JSHandle@object
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CONSOLE LOG ENTRY: Started Softmax category
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CONSOLE LOG ENTRY: O false
|
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CONSOLE LOG ENTRY: Started Softmax Performance: 50K samples, 100 features
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CONSOLE LOG ENTRY: Finished Softmax Performance: 50K samples, 100 features for
|
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+
CONSOLE LOG ENTRY: Finished Softmax Performance: 50K samples, 100 features for 2509 ms
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CONSOLE LOG ENTRY: --------------------
|
|
@@ -292,7 +282,7 @@ CONSOLE LOG ENTRY: JSHandle@object
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CONSOLE LOG ENTRY: Started XGBoost category
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CONSOLE LOG ENTRY: O false
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CONSOLE LOG ENTRY: Started XGBoost Correctness
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CONSOLE LOG ENTRY: Finished XGBoost Correctness for
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CONSOLE LOG ENTRY: Finished XGBoost Correctness for 193 ms
|
|
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CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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CONSOLE LOG ENTRY: --------------------
|
|
@@ -301,6 +291,6 @@ CONSOLE LOG ENTRY: JSHandle@object
|
|
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CONSOLE LOG ENTRY: Started XGBoost category
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CONSOLE LOG ENTRY: O false
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CONSOLE LOG ENTRY: Started XGBoost Performance: 50K samples, 100 features
|
|
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CONSOLE LOG ENTRY: Finished XGBoost Performance: 50K samples, 100 features for
|
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CONSOLE LOG ENTRY: Finished XGBoost Performance: 50K samples, 100 features for 1850 ms
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CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
|
package/test-record-1.mp4
CHANGED
|
Binary file
|