@datagrok/bio 2.8.3 → 2.8.6
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- package/CHANGELOG.md +15 -1
- package/dist/package-test.js +1 -1
- package/dist/package-test.js.map +1 -1
- package/dist/package.js +1 -1
- package/dist/package.js.map +1 -1
- package/dockerfiles/Dockerfile +5 -4
- package/package.json +4 -3
- package/src/analysis/sequence-activity-cliffs.ts +8 -7
- package/src/analysis/sequence-similarity-viewer.ts +8 -8
- package/src/apps/web-logo-app.ts +26 -6
- package/src/calculations/monomerLevelMols.ts +6 -3
- package/src/package.ts +2 -1
- package/src/tests/converters-test.ts +1 -1
- package/src/tests/msa-tests.ts +2 -3
- package/src/tests/renderers-test.ts +37 -3
- package/src/tests/splitters-test.ts +27 -1
- package/src/tests/units-handler-splitted-tests.ts +19 -12
- package/src/tests/units-handler-tests.ts +15 -15
- package/src/utils/cell-renderer.ts +31 -22
- package/src/utils/monomer-cell-renderer.ts +14 -14
- package/src/utils/save-as-fasta.ts +1 -1
- package/src/utils/split-to-monomers.ts +40 -6
- package/src/viewers/vd-regions-viewer.ts +88 -51
- package/src/viewers/web-logo-viewer.ts +327 -343
- package/src/widgets/composition-analysis-widget.ts +6 -2
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@@ -1,12 +1,16 @@
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import * as grok from 'datagrok-api/grok';
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import * as ui from 'datagrok-api/ui';
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import * as DG from 'datagrok-api/dg';
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import wu from 'wu';
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import {TAGS as bioTAGS, ALPHABET, getPaletteByType} from '@datagrok-libraries/bio/src/utils/macromolecule';
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import {SeqPalette} from '@datagrok-libraries/bio/src/seq-palettes';
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import {UnknownSeqPalettes} from '@datagrok-libraries/bio/src/unknown';
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import '../../css/composition-analysis.css';
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import {UnitsHandler} from '@datagrok-libraries/bio/src/utils/units-handler';
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export function getCompositionAnalysisWidget(val: DG.SemanticValue) {
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const host = ui.div();
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host.classList.add('macromolecule-cell-comp-analysis-host');
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@@ -30,14 +34,14 @@ export function getCompositionAnalysisWidget(val: DG.SemanticValue) {
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const splitter = uh.getSplitter();
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const parts = splitter(val.value);
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const len = parts.length;
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parts.filter((p) => p && p !== '').forEach((c: string) => {
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wu(parts).filter((p) => !!p && p !== '').forEach((c: string) => {
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const count = counts.get(c) || 0;
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counts.set(c, count + 1);
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max = Math.max(max, count + 1);
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});
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max /= len;// percentage
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// calculate frequencies
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const compositionMap: {[key: string]: HTMLElement} = {};
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const compositionMap: { [key: string]: HTMLElement } = {};
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const valueArray = Array.from(counts.entries());
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valueArray.sort((a, b) => b[1] - a[1]);
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valueArray.forEach(([key, value]) => {
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