@datagrok/bio 2.8.0 → 2.8.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +32 -7
- package/dist/package-test.js +1 -1
- package/dist/package-test.js.map +1 -1
- package/dist/package.js +1 -1
- package/dist/package.js.map +1 -1
- package/files/samples/FASTA.csv +65 -0
- package/files/samples/HELM.csv +541 -0
- package/files/samples/HELM_cyclic.tsv +42 -0
- package/files/samples/MSA.csv +541 -0
- package/files/samples/natural-sequences.csv +5063 -0
- package/files/samples/synthetic-sequences.csv +5044 -0
- package/package.json +3 -3
- package/scripts/sequence_generator.py +6 -3
- package/src/demo/bio03-atomic-level.ts +1 -1
- package/src/demo/bio05-helm-msa-sequence-space.ts +1 -1
- package/src/package.ts +1 -1
- package/src/tests/bio-tests.ts +33 -3
- package/src/tests/detectors-tests.ts +3 -3
- package/src/tests/renderers-monomer-placer.ts +7 -7
- package/src/tests/renderers-test.ts +1 -1
- package/src/tests/splitters-test.ts +1 -1
- package/src/utils/monomer-cell-renderer.ts +2 -2
package/CHANGELOG.md
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# Bio changelog
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## 2.8.2 (2023-08-01)
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This release focuses on improving the monomer cell renderer.
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*Dependency: datagrok-api >= 1.13.3*
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### Features
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* Added sample datasets for natural and synthetic peptide sequences
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* Added sample dataset for cyclic sequences with HELM notation
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### Bug fixes
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* GROK-13659: Bio | Tools: Fix MaxMonomerLength for Macromolecule cell renderer
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## 2.8.1 (2023-07-24)
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This release focuses on improving the monomer cell renderer.
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*Dependency: datagrok-api >= 1.13.3*
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### Features
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* Monomer cell renderer now defaults to 6 characters per monomer.
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## 2.8.0 (2023-07-21)
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This release focuses on improving feature stability and usability.
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### Features
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* Add Copy group to Macromolecule cell context menu
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* Add DefaultSeparator package property settings
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* Add Copy group to Macromolecule cell context menu.
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* Add DefaultSeparator package property settings.
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### Bug Fixes
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* Fix VdRegionsViewer filter source checkbox tooltip, workaround
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* Fix VdRegionsViewer filter source checkbox tooltip, workaround.
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## 2.7.2 (2023-07-21)
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This release focuses on
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This release focuses on improvements and bug fixes.
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*Dependency: datagarok-api >= 1.13.3*
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* Detected Helm monomer type for separator data and made it usable for MSA.
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* Added alignment options to **Kalign**.
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* Added separator support for **Sequence Space** and **Activity Cliffs**.
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* For macromolecule
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* Tooltip: shows monomer atomic structure for macromolecules.
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* For macromolecule cells, added the ability to show composition ratios in the property panel.
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* **Top menu**: organized the items into groups **SAR**, **Structure**, **Atomic level**, and **Search**.
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### Bug Fixes
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