@datagrok/bio 2.7.2 → 2.8.1

package/CHANGELOG.md

@@ -0,0 +1,46 @@
+# Bio changelog
+
+## 2.8.1 (2023-07-24)
+
+This release focuses on improving the monomer cell renderer.
+
+*Dependency: datgarok-api >= 1.13.3*
+
+### Features
+
+* Monomer cell renderer now defaults to 6 characters per monomer.
+
+## 2.8.0 (2023-07-21)
+
+This release focuses on improving feature stability and usability.
+
+*Dependency: datgarok-api >= 1.13.3*
+
+### Features
+
+* Add Copy group to Macromolecule cell context menu.
+* Add DefaultSeparator package property settings.
+
+### Bug Fixes
+
+* Fix VdRegionsViewer filter source checkbox tooltip, workaround.
+
+## 2.7.2 (2023-07-21)
+
+This release focuses on improving analysis stability and usability.
+
+*Dependency: datagarok-api >= 1.13.3*
+
+### Features
+
+* Set default values in all dialogs where appropriate.
+* Detected Helm monomer type for separator data and made it usable for MSA.
+* Added alignment options to **Kalign**.
+* Added separator support for **Sequence Space** and **Activity Cliffs**.
+* Implemented showing monomer atomic structure in tooltips for macromolecules.
+* For macromolecule cells, added the ability to show composition ratios in the property panel.
+* We have structured the top menu by organizing the items into groups: SAR, Structure, Atomic level, and Search. 
+
+### Bug Fixes
+
+* GROK-13048: Activity cliffs identification for macromolecules.

package/detectors.js

@@ -482,4 +482,34 @@ class BioPackageDetectors extends DG.Package {
 
     return wu(idxSet).map((idx) => col.get(idx));
   }
+
+  // -- autostart --
+
+  //name: autostart
+  //tags: autostart
+  //description: Bio bootstrap
+  autostart() {
+    this.logger.debug('Bio: detectors.js: autostart()');
+
+    this.autostartContextMenu();
+  }
+
+  autostartContextMenu() {
+    grok.events.onContextMenu.subscribe((event) => {
+      if (event.args.item && event.args.item instanceof DG.GridCell &&
+        event.args.item.tableColumn && event.args.item.tableColumn.semType === DG.SEMTYPE.MACROMOLECULE
+      ) {
+        const contextMenu = event.args.menu;
+        const cell = event.args.item.cell; // DG.Cell
+
+        grok.functions.call('Bio:addCopyMenu', {cell: cell, menu: contextMenu})
+          .catch((err) => {
+            grok.shell.error(err.toString());
+          });
+
+        event.preventDefault();
+        return true;
+      }
+    });
+  }
 }