@datagrok/bio 2.6.0 → 2.6.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/package-test.js +1 -1
- package/dist/package-test.js.map +1 -1
- package/dist/package.js +1 -1
- package/dist/package.js.map +1 -1
- package/package.json +2 -2
- package/src/utils/cell-renderer.ts +13 -8
package/package.json
CHANGED
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@@ -5,7 +5,7 @@
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"name": "Leonid Stolbov",
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"email": "lstolbov@datagrok.ai"
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},
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-
"version": "2.6.
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8
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+
"version": "2.6.1",
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"description": "Bioinformatics support (import/export of sequences, conversion, visualization, analysis). [See more](https://github.com/datagrok-ai/public/blob/master/packages/Bio/README.md) for details.",
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"repository": {
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"type": "git",
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@@ -22,7 +22,7 @@
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],
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"dependencies": {
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"@biowasm/aioli": "^3.1.0",
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-
"@datagrok-libraries/bio": "^5.33.
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"@datagrok-libraries/bio": "^5.33.2",
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"@datagrok-libraries/chem-meta": "^1.0.1",
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"@datagrok-libraries/ml": "^6.3.39",
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"@datagrok-libraries/tutorials": "^1.3.2",
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@@ -88,11 +88,16 @@ export class MacromoleculeSequenceCellRenderer extends DG.GridCellRenderer {
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if (left !== null && left < seqMonList.length) {
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const monomerSymbol: string = seqMonList[left];
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const tooltipElements: HTMLElement[] = [ui.div(monomerSymbol)];
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-
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-
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const
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-
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if (seqColTemp._monomerStructureMap[monomerSymbol]) {
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tooltipElements.push(seqColTemp._monomerStructureMap[monomerSymbol]);
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} else {
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const monomer = seqColTemp.getMonomer(monomerSymbol);
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if (monomer) {
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const options = {autoCrop: true, autoCropMargin: 0, suppressChiralText: true};
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const monomerSVG = grok.chem.svgMol(monomer.smiles, undefined, undefined, options);
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tooltipElements.push(monomerSVG);
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seqColTemp._monomerStructureMap[monomerSymbol] = monomerSVG;
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}
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}
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ui.tooltip.show(ui.divV(tooltipElements), e.x + 16, e.y + 16);
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} else {
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@@ -122,7 +127,7 @@ export class MacromoleculeSequenceCellRenderer extends DG.GridCellRenderer {
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// TODO: Store temp data to GridColumn
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// Now the renderer requires data frame table Column underlying GridColumn
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-
const
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+
const grid = gridCell.grid;
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const tableCol: DG.Column = gridCell.cell.column;
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const tableColTemp: TempType = tableCol.temp;
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@@ -135,7 +140,7 @@ export class MacromoleculeSequenceCellRenderer extends DG.GridCellRenderer {
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let seqColTemp: MonomerPlacer = tableCol.temp[tempTAGS.bioSeqCol];
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if (!seqColTemp) {
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seqColTemp = new MonomerPlacer(
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seqColTemp = new MonomerPlacer(grid, tableCol,
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() => {
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const uh = UnitsHandler.getOrCreate(tableCol);
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return {
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@@ -236,7 +241,7 @@ export class MacromoleculeSequenceCellRenderer extends DG.GridCellRenderer {
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/*x1 = */
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printLeftOrCentered(x + this.padding, y, w, h,
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g, amino, color, 0, true, 1.0, separator, last, drawStyle,
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-
maxLengthWordsSum, index, gridCell, referenceSequence, maxLengthOfMonomer);
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maxLengthWordsSum, index, gridCell, referenceSequence, maxLengthOfMonomer, seqColTemp._monomerLengthMap);
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if (minDistanceRenderer > w) break;
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}
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} catch (err: any) {
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