@datagrok/bio 2.4.28 → 2.4.30

package/dist/925.js

@@ -0,0 +1,2 @@
+var bio;(()=>{"use strict";var t,e,r={6925:(t,e,r)=>{class a{get data(){return this._data}get size(){return this._size}constructor(t,e){if(null==e){if(null==t)throw new Error("Arguments error: data or size is required.");if(this._data=t,this._size=(1+Math.sqrt(1+8*this._data.length))/2,this._size!=Math.floor(this._size))throw new Error(`Invalid data length ${this._data.length} leads to non integer size ${this._size}`)}else{this._size=e;const r=e*(e-1)/2;if(t){if(t.length!=r)throw new Error(`Invalid data length. Observations size ${e} requires data length ${r}.`);this._data=t}else this._data=new Float32Array(r)}}_linearizeIJ(t,e){if(!(t<e))throw new Error("i must be less than j");return this._size*t+e-Math.floor((t+2)*(t+1)/2)}get(t,e){return t==e?0:t<e?this._data[this._linearizeIJ(t,e)]:this._data[this._linearizeIJ(e,t)]}set(t,e,r){this._data[this._linearizeIJ(t,e)]=r}static calc(t,e){const r=t.length,i=new a(void 0,r);for(let a=0;a<r;a++)for(let s=a+1;s<r;s++)i.set(a,s,e(t[a],t[s]));return i}square(){for(let t=0;t<this._data.length;t++)this._data[t]=Math.pow(this._data[t],2)}add(t){if(this._size!==t._size)throw new Error(`Matrices must have the same size. This size: ${this._size}, other size: ${t._size}`);for(let e=0;e<this._data.length;e++)this._data[e]+=t._data[e]}sqrt(){for(let t=0;t<this._data.length;t++)this._data[t]=Math.sqrt(this._data[t])}normalize(){let t=this._data[0],e=this._data[0];for(let r=0;r<this._data.length;r++)this._data[r]<t&&(t=this._data[r]),this._data[r]>e&&(e=this._data[r]);const r=e-t;for(let a=0;a<this._data.length;a++)this._data[a]=0===r?this._data[a]-t:(this._data[a]-t)/(e-t)}}var i,s=r(779),n=r(458),o=r(6683);!function(t){t.HAMMING="Hamming",t.LEVENSHTEIN="Levenshtein",t.NEEDLEMANN_WUNSCH="Needlemann-Wunsch"}(i||(i={}));const h={[i.HAMMING]:s.j,[i.LEVENSHTEIN]:n.r,[i.NEEDLEMANN_WUNSCH]:o.n};onmessage=t=>{const{values:e,fnName:r}=t.data,i={};try{const t=a.calc(e,h[r]());t.normalize(),i.distanceMatrixData=t.data}catch(t){i.error=t}postMessage(i)}}},a={};function i(t){var e=a[t];if(void 0!==e)return e.exports;var s=a[t]={exports:{}};return r[t](s,s.exports,i),s.exports}i.m=r,i.x=()=>{var t=i.O(void 0,[562],(()=>i(6925)));return i.O(t)},t=[],i.O=(e,r,a,s)=>{if(!r){var n=1/0;for(d=0;d<t.length;d++){for(var[r,a,s]=t[d],o=!0,h=0;h<r.length;h++)(!1&s||n>=s)&&Object.keys(i.O).every((t=>i.O[t](r[h])))?r.splice(h--,1):(o=!1,s<n&&(n=s));if(o){t.splice(d--,1);var l=a();void 0!==l&&(e=l)}}return e}s=s||0;for(var d=t.length;d>0&&t[d-1][2]>s;d--)t[d]=t[d-1];t[d]=[r,a,s]},i.d=(t,e)=>{for(var r in e)i.o(e,r)&&!i.o(t,r)&&Object.defineProperty(t,r,{enumerable:!0,get:e[r]})},i.f={},i.e=t=>Promise.all(Object.keys(i.f).reduce(((e,r)=>(i.f[r](t,e),e)),[])),i.u=t=>t+".js",i.g=function(){if("object"==typeof globalThis)return globalThis;try{return this||new Function("return this")()}catch(t){if("object"==typeof window)return window}}(),i.o=(t,e)=>Object.prototype.hasOwnProperty.call(t,e),(()=>{var t;i.g.importScripts&&(t=i.g.location+"");var e=i.g.document;if(!t&&e&&(e.currentScript&&(t=e.currentScript.src),!t)){var r=e.getElementsByTagName("script");r.length&&(t=r[r.length-1].src)}if(!t)throw new Error("Automatic publicPath is not supported in this browser");t=t.replace(/#.*$/,"").replace(/\?.*$/,"").replace(/\/[^\/]+$/,"/"),i.p=t})(),(()=>{var t={925:1};i.f.i=(e,r)=>{t[e]||importScripts(i.p+i.u(e))};var e=self.webpackChunkbio=self.webpackChunkbio||[],r=e.push.bind(e);e.push=e=>{var[a,s,n]=e;for(var o in s)i.o(s,o)&&(i.m[o]=s[o]);for(n&&n(i);a.length;)t[a.pop()]=1;r(e)}})(),e=i.x,i.x=()=>i.e(562).then(e);var s=i.x();bio=s})();
+//# sourceMappingURL=925.js.map

package/dist/925.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"925.js","mappings":"+BAAIA,ECAAC,E,kBCCG,MAAMC,EACLC,WAAS,OAAOC,KAAKC,KAAO,CAC5BC,WAAS,OAAOF,KAAKG,KAAO,CAKhCC,YAAYL,EAAMG,GACd,GAAYG,MAARH,EAAmB,CACnB,GAAYG,MAARN,EACA,MAAM,IAAIO,MAAM,8CAGpB,GAFAN,KAAKC,MAAQF,EACbC,KAAKG,OAAS,EAAII,KAAKC,KAAK,EAAI,EAAQR,KAAKC,MAAMQ,SAAW,EAC1DT,KAAKG,OAASI,KAAKG,MAAMV,KAAKG,OAC9B,MAAM,IAAIG,MAAM,uBAAuBN,KAAKC,MAAMQ,oCAAoCT,KAAKG,QACnG,KACK,CACDH,KAAKG,MAAQD,EACb,MAAMS,EAAaT,GAAQA,EAAO,GAAK,EACvC,GAAIH,EAAM,CACN,GAAIA,EAAKU,QAAUE,EACf,MAAM,IAAIL,MAAM,0CAA0CJ,0BAA6BS,MAC3FX,KAAKC,MAAQF,CACjB,MAEIC,KAAKC,MAAQ,IAAIW,aAAaD,EAEtC,CACJ,CACAE,aAAaC,EAAGC,GACZ,KAAMD,EAAIC,GACN,MAAM,IAAIT,MAAM,yBACpB,OAAON,KAAKG,MAAQW,EAAIC,EAAIR,KAAKG,OAAQI,EAAI,IAAMA,EAAI,GAAM,EACjE,CACAE,IAAIF,EAAGC,GACH,OAAID,GAAKC,EACE,EACFD,EAAIC,EACFf,KAAKC,MAAMD,KAAKa,aAAaC,EAAGC,IAEhCf,KAAKC,MAAMD,KAAKa,aAAaE,EAAGD,GAC/C,CACAG,IAAIH,EAAGC,EAAGG,GACNlB,KAAKC,MAAMD,KAAKa,aAAaC,EAAGC,IAAMG,CAC1C,CACAC,YAAYC,EAAMC,GACd,MAAMnB,EAAOkB,EAAKX,OACZa,EAAM,IAAIxB,OAAeO,EAAWH,GAC1C,IAAK,IAAIY,EAAI,EAAGA,EAAIZ,EAAMY,IACtB,IAAK,IAAIC,EAAID,EAAI,EAAGC,EAAIb,EAAMa,IAC1BO,EAAIL,IAAIH,EAAGC,EAAGM,EAAOD,EAAKN,GAAIM,EAAKL,KAE3C,OAAOO,CACX,CAEAC,SACI,IAAK,IAAIT,EAAI,EAAGA,EAAId,KAAKC,MAAMQ,OAAQK,IACnCd,KAAKC,MAAMa,GAAKP,KAAKiB,IAAIxB,KAAKC,MAAMa,GAAI,EAChD,CAEAW,IAAIC,GACA,GAAI1B,KAAKG,QAAUuB,EAAMvB,MACrB,MAAM,IAAIG,MAAM,gDAAgDN,KAAKG,sBAAsBuB,EAAMvB,SACrG,IAAK,IAAIW,EAAI,EAAGA,EAAId,KAAKC,MAAMQ,OAAQK,IACnCd,KAAKC,MAAMa,IAAMY,EAAMzB,MAAMa,EACrC,CAEAN,OACI,IAAK,IAAIM,EAAI,EAAGA,EAAId,KAAKC,MAAMQ,OAAQK,IACnCd,KAAKC,MAAMa,GAAKP,KAAKC,KAAKR,KAAKC,MAAMa,GAC7C,CAEAa,YACI,IAAIC,EAAM5B,KAAKC,MAAM,GACjB4B,EAAM7B,KAAKC,MAAM,GACrB,IAAK,IAAIa,EAAI,EAAGA,EAAId,KAAKC,MAAMQ,OAAQK,IAC/Bd,KAAKC,MAAMa,GAAKc,IAChBA,EAAM5B,KAAKC,MAAMa,IACjBd,KAAKC,MAAMa,GAAKe,IAChBA,EAAM7B,KAAKC,MAAMa,IAEzB,MAAMgB,EAAQD,EAAMD,EACpB,IAAK,IAAId,EAAI,EAAGA,EAAId,KAAKC,MAAMQ,OAAQK,IACnCd,KAAKC,MAAMa,GAAe,IAAVgB,EAAc9B,KAAKC,MAAMa,GAAKc,GAAO5B,KAAKC,MAAMa,GAAKc,IAAQC,EAAMD,EAC3F,E,IC7EOG,E,6BACX,SAAWA,GACPA,EAAkC,QAAI,UACtCA,EAAsC,YAAI,cAC1CA,EAA4C,kBAAI,mBACnD,CAJD,CAIGA,IAA6BA,EAA2B,CAAC,IAErD,MAAMC,EAAsB,CAC/B,CAACD,EAAyBE,SAAUC,EAAA,EACpC,CAACH,EAAyBI,aAAcC,EAAA,EACxC,CAACL,EAAyBM,mBAAoB,EAAAC,GCdlDC,UAAaC,IACX,MAAM,OAACC,EAAM,OAAEC,GAAUF,EAAMzC,KACzBA,EAA2D,CAAC,EAClE,IACE,MAAM4C,EAAiB7C,EAAe8C,KAAKH,EAAQT,EAAoBU,MACvEC,EAAehB,YACf5B,EAAK8C,mBAAqBF,EAAe5C,I,CACzC,MAAO+C,GACP/C,EAAKgD,MAAQD,C,CAEfE,YAAYjD,EAAK,C,GCbfkD,EAA2B,CAAC,EAGhC,SAASC,EAAoBC,GAE5B,IAAIC,EAAeH,EAAyBE,GAC5C,QAAqB9C,IAAjB+C,EACH,OAAOA,EAAaC,QAGrB,IAAIC,EAASL,EAAyBE,GAAY,CAGjDE,QAAS,CAAC,GAOX,OAHAE,EAAoBJ,GAAUG,EAAQA,EAAOD,QAASH,GAG/CI,EAAOD,OACf,CAGAH,EAAoBM,EAAID,EAGxBL,EAAoBO,EAAI,KAGvB,IAAIC,EAAsBR,EAAoBS,OAAEtD,EAAW,CAAC,MAAM,IAAO6C,EAAoB,QAE7F,OADsBA,EAAoBS,EAAED,EAClB,ELjCvB9D,EAAW,GACfsD,EAAoBS,EAAI,CAACC,EAAQC,EAAUC,EAAIC,KAC9C,IAAGF,EAAH,CAMA,IAAIG,EAAeC,IACnB,IAASnD,EAAI,EAAGA,EAAIlB,EAASa,OAAQK,IAAK,CAGzC,IAFA,IAAK+C,EAAUC,EAAIC,GAAYnE,EAASkB,GACpCoD,GAAY,EACPnD,EAAI,EAAGA,EAAI8C,EAASpD,OAAQM,MACpB,EAAXgD,GAAsBC,GAAgBD,IAAaI,OAAOC,KAAKlB,EAAoBS,GAAGU,OAAOC,GAASpB,EAAoBS,EAAEW,GAAKT,EAAS9C,MAC9I8C,EAASU,OAAOxD,IAAK,IAErBmD,GAAY,EACTH,EAAWC,IAAcA,EAAeD,IAG7C,GAAGG,EAAW,CACbtE,EAAS2E,OAAOzD,IAAK,GACrB,IAAI0D,EAAIV,SACEzD,IAANmE,IAAiBZ,EAASY,EAC/B,CACD,CACA,OAAOZ,CAnBP,CAJCG,EAAWA,GAAY,EACvB,IAAI,IAAIjD,EAAIlB,EAASa,OAAQK,EAAI,GAAKlB,EAASkB,EAAI,GAAG,GAAKiD,EAAUjD,IAAKlB,EAASkB,GAAKlB,EAASkB,EAAI,GACrGlB,EAASkB,GAAK,CAAC+C,EAAUC,EAAIC,EAqBjB,EMzBdb,EAAoBuB,EAAI,CAACpB,EAASqB,KACjC,IAAI,IAAIJ,KAAOI,EACXxB,EAAoByB,EAAED,EAAYJ,KAASpB,EAAoByB,EAAEtB,EAASiB,IAC5EH,OAAOS,eAAevB,EAASiB,EAAK,CAAEO,YAAY,EAAM7D,IAAK0D,EAAWJ,IAE1E,ECNDpB,EAAoB4B,EAAI,CAAC,EAGzB5B,EAAoBJ,EAAKiC,GACjBC,QAAQC,IAAId,OAAOC,KAAKlB,EAAoB4B,GAAGI,QAAO,CAACC,EAAUb,KACvEpB,EAAoB4B,EAAER,GAAKS,EAASI,GAC7BA,IACL,KCNJjC,EAAoBkC,EAAKL,GAEZA,EAAU,MCHvB7B,EAAoBmC,EAAI,WACvB,GAA0B,iBAAfC,WAAyB,OAAOA,WAC3C,IACC,OAAOtF,MAAQ,IAAIuF,SAAS,cAAb,EAChB,CAAE,MAAOzC,GACR,GAAsB,iBAAX0C,OAAqB,OAAOA,MACxC,CACA,CAPuB,GCAxBtC,EAAoByB,EAAI,CAACc,EAAKC,IAAUvB,OAAOwB,UAAUC,eAAeC,KAAKJ,EAAKC,G,MCAlF,IAAII,EACA5C,EAAoBmC,EAAEU,gBAAeD,EAAY5C,EAAoBmC,EAAEW,SAAW,IACtF,IAAIC,EAAW/C,EAAoBmC,EAAEY,SACrC,IAAKH,GAAaG,IACbA,EAASC,gBACZJ,EAAYG,EAASC,cAAcC,MAC/BL,GAAW,CACf,IAAIM,EAAUH,EAASI,qBAAqB,UACzCD,EAAQ3F,SAAQqF,EAAYM,EAAQA,EAAQ3F,OAAS,GAAG0F,IAC5D,CAID,IAAKL,EAAW,MAAM,IAAIxF,MAAM,yDAChCwF,EAAYA,EAAUQ,QAAQ,OAAQ,IAAIA,QAAQ,QAAS,IAAIA,QAAQ,YAAa,KACpFpD,EAAoBqD,EAAIT,C,WCXxB,IAAIU,EAAkB,CACrB,IAAK,GAgBNtD,EAAoB4B,EAAEhE,EAAI,CAACiE,EAASI,KAE/BqB,EAAgBzB,IAElBgB,cAAc7C,EAAoBqD,EAAIrD,EAAoBkC,EAAEL,GAE9D,EAGD,IAAI0B,EAAqBC,KAAsB,gBAAIA,KAAsB,iBAAK,GAC1EC,EAA6BF,EAAmBG,KAAKC,KAAKJ,GAC9DA,EAAmBG,KAvBC7G,IACnB,IAAK8D,EAAUiD,EAAaC,GAAWhH,EACvC,IAAI,IAAIoD,KAAY2D,EAChB5D,EAAoByB,EAAEmC,EAAa3D,KACrCD,EAAoBM,EAAEL,GAAY2D,EAAY3D,IAIhD,IADG4D,GAASA,EAAQ7D,GACdW,EAASpD,QACd+F,EAAgB3C,EAASmD,OAAS,EACnCL,EAA2B5G,EAAK,C,KXnB7BF,EAAOqD,EAAoBO,EAC/BP,EAAoBO,EAAI,IAChBP,EAAoBJ,EAAE,KAAKmE,KAAKpH,GYDxC,IAAI6D,EAAsBR,EAAoBO,I","sources":["webpack://bio/webpack/runtime/chunk loaded","webpack://bio/webpack/runtime/startup chunk dependencies","webpack://bio/./node_modules/@datagrok-libraries/bio/src/trees/distance-matrix.js","webpack://bio/./node_modules/@datagrok-libraries/ml/src/macromolecule-distance-functions/macromolecule-distance-functions.js","webpack://bio/./src/analysis/workers/mm-distance-worker.ts","webpack://bio/webpack/bootstrap","webpack://bio/webpack/runtime/define property getters","webpack://bio/webpack/runtime/ensure chunk","webpack://bio/webpack/runtime/get javascript chunk filename","webpack://bio/webpack/runtime/global","webpack://bio/webpack/runtime/hasOwnProperty shorthand","webpack://bio/webpack/runtime/publicPath","webpack://bio/webpack/runtime/importScripts chunk loading","webpack://bio/webpack/startup"],"sourcesContent":["var deferred = [];\n__webpack_require__.O = (result, chunkIds, fn, priority) => {\n\tif(chunkIds) {\n\t\tpriority = priority || 0;\n\t\tfor(var i = deferred.length; i > 0 && deferred[i - 1][2] > priority; i--) deferred[i] = deferred[i - 1];\n\t\tdeferred[i] = [chunkIds, fn, priority];\n\t\treturn;\n\t}\n\tvar notFulfilled = Infinity;\n\tfor (var i = 0; i < deferred.length; i++) {\n\t\tvar [chunkIds, fn, priority] = deferred[i];\n\t\tvar fulfilled = true;\n\t\tfor (var j = 0; j < chunkIds.length; j++) {\n\t\t\tif ((priority & 1 === 0 || notFulfilled >= priority) && Object.keys(__webpack_require__.O).every((key) => (__webpack_require__.O[key](chunkIds[j])))) {\n\t\t\t\tchunkIds.splice(j--, 1);\n\t\t\t} else {\n\t\t\t\tfulfilled = false;\n\t\t\t\tif(priority < notFulfilled) notFulfilled = priority;\n\t\t\t}\n\t\t}\n\t\tif(fulfilled) {\n\t\t\tdeferred.splice(i--, 1)\n\t\t\tvar r = fn();\n\t\t\tif (r !== undefined) result = r;\n\t\t}\n\t}\n\treturn result;\n};","var next = __webpack_require__.x;\n__webpack_require__.x = () => {\n\treturn __webpack_require__.e(562).then(next);\n};","/** Distance matrix class compatible with data structure of scipy.spatial.distance.pdist */\nexport class DistanceMatrix {\n    get data() { return this._data; }\n    get size() { return this._size; }\n    /**\n     * @param {Float32Array} data Distance data\n     * @param {number} size Number of original observations\n     */\n    constructor(data, size) {\n        if (size == undefined) {\n            if (data == undefined)\n                throw new Error('Arguments error: data or size is required.');\n            this._data = data;\n            this._size = (1 + Math.sqrt(1 + 4 * 2 * this._data.length)) / 2;\n            if (this._size != Math.floor(this._size))\n                throw new Error(`Invalid data length ${this._data.length} leads to non integer size ${this._size}`);\n        }\n        else {\n            this._size = size;\n            const dataLength = size * (size - 1) / 2;\n            if (data) {\n                if (data.length != dataLength)\n                    throw new Error(`Invalid data length. Observations size ${size} requires data length ${dataLength}.`);\n                this._data = data;\n            }\n            else {\n                this._data = new Float32Array(dataLength);\n            }\n        }\n    }\n    _linearizeIJ(i, j) {\n        if (!(i < j))\n            throw new Error('i must be less than j');\n        return this._size * i + j - Math.floor(((i + 2) * (i + 1)) / 2);\n    }\n    get(i, j) {\n        if (i == j)\n            return 0;\n        else if (i < j)\n            return this._data[this._linearizeIJ(i, j)];\n        else\n            return this._data[this._linearizeIJ(j, i)];\n    }\n    set(i, j, value) {\n        this._data[this._linearizeIJ(i, j)] = value;\n    }\n    static calc(list, method) {\n        const size = list.length;\n        const res = new DistanceMatrix(undefined, size);\n        for (let i = 0; i < size; i++) {\n            for (let j = i + 1; j < size; j++)\n                res.set(i, j, method(list[i], list[j]));\n        }\n        return res;\n    }\n    // squares each value in matrix in place\n    square() {\n        for (let i = 0; i < this._data.length; i++)\n            this._data[i] = Math.pow(this._data[i], 2);\n    }\n    // adds another matrix to this one in place\n    add(other) {\n        if (this._size !== other._size)\n            throw new Error(`Matrices must have the same size. This size: ${this._size}, other size: ${other._size}`);\n        for (let i = 0; i < this._data.length; i++)\n            this._data[i] += other._data[i];\n    }\n    // square root each value in matrix in place\n    sqrt() {\n        for (let i = 0; i < this._data.length; i++)\n            this._data[i] = Math.sqrt(this._data[i]);\n    }\n    //normilze distance matrix in place\n    normalize() {\n        let min = this._data[0];\n        let max = this._data[0];\n        for (let i = 0; i < this._data.length; i++) {\n            if (this._data[i] < min)\n                min = this._data[i];\n            if (this._data[i] > max)\n                max = this._data[i];\n        }\n        const range = max - min;\n        for (let i = 0; i < this._data.length; i++)\n            this._data[i] = range === 0 ? this._data[i] - min : (this._data[i] - min) / (max - min);\n    }\n}\n//# sourceMappingURL=distance-matrix.js.map","import { hamming } from './hamming';\nimport { levenstein } from './levenstein';\nimport { needlemanWunch } from './needleman-wunsch';\n/** Enum containing currently supported macromolecule distance functions\n * Hamming distance will be used if the sequences are already aligned\n * Needleman distance will be used for protein sequences with known BLOSUM62 matrix\n * Levenshtein distance will be used for nucleotide sequences as for them substitution matrix is same as identity matrix\n */\nexport var MmDistanceFunctionsNames;\n(function (MmDistanceFunctionsNames) {\n    MmDistanceFunctionsNames[\"HAMMING\"] = \"Hamming\";\n    MmDistanceFunctionsNames[\"LEVENSHTEIN\"] = \"Levenshtein\";\n    MmDistanceFunctionsNames[\"NEEDLEMANN_WUNSCH\"] = \"Needlemann-Wunsch\";\n})(MmDistanceFunctionsNames || (MmDistanceFunctionsNames = {}));\n;\nexport const mmDistanceFunctions = {\n    [MmDistanceFunctionsNames.HAMMING]: hamming,\n    [MmDistanceFunctionsNames.LEVENSHTEIN]: levenstein,\n    [MmDistanceFunctionsNames.NEEDLEMANN_WUNSCH]: needlemanWunch\n};\n//# sourceMappingURL=data:application/json;base64,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","import {DistanceMatrix} from '@datagrok-libraries/bio/src/trees/distance-matrix';\nimport {mmDistanceFunctions, MmDistanceFunctionsNames}\n  from '@datagrok-libraries/ml/src/macromolecule-distance-functions';\n\nonmessage = (event) => {\n  const {values, fnName} = event.data;\n  const data: { error?: any; distanceMatrixData?: Float32Array } = {};\n  try {\n    const distanceMatrix = DistanceMatrix.calc(values, mmDistanceFunctions[fnName as MmDistanceFunctionsNames]());\n    distanceMatrix.normalize();\n    data.distanceMatrixData = distanceMatrix.data;\n  } catch (e) {\n    data.error = e;\n  }\n  postMessage(data);\n};\n","// The module cache\nvar __webpack_module_cache__ = {};\n\n// The require function\nfunction __webpack_require__(moduleId) {\n\t// Check if module is in cache\n\tvar cachedModule = __webpack_module_cache__[moduleId];\n\tif (cachedModule !== undefined) {\n\t\treturn cachedModule.exports;\n\t}\n\t// Create a new module (and put it into the cache)\n\tvar module = __webpack_module_cache__[moduleId] = {\n\t\t// no module.id needed\n\t\t// no module.loaded needed\n\t\texports: {}\n\t};\n\n\t// Execute the module function\n\t__webpack_modules__[moduleId](module, module.exports, __webpack_require__);\n\n\t// Return the exports of the module\n\treturn module.exports;\n}\n\n// expose the modules object (__webpack_modules__)\n__webpack_require__.m = __webpack_modules__;\n\n// the startup function\n__webpack_require__.x = () => {\n\t// Load entry module and return exports\n\t// This entry module depends on other loaded chunks and execution need to be delayed\n\tvar __webpack_exports__ = __webpack_require__.O(undefined, [562], () => (__webpack_require__(6925)))\n\t__webpack_exports__ = __webpack_require__.O(__webpack_exports__);\n\treturn __webpack_exports__;\n};\n\n","// define getter functions for harmony exports\n__webpack_require__.d = (exports, definition) => {\n\tfor(var key in definition) {\n\t\tif(__webpack_require__.o(definition, key) && !__webpack_require__.o(exports, key)) {\n\t\t\tObject.defineProperty(exports, key, { enumerable: true, get: definition[key] });\n\t\t}\n\t}\n};","__webpack_require__.f = {};\n// This file contains only the entry chunk.\n// The chunk loading function for additional chunks\n__webpack_require__.e = (chunkId) => {\n\treturn Promise.all(Object.keys(__webpack_require__.f).reduce((promises, key) => {\n\t\t__webpack_require__.f[key](chunkId, promises);\n\t\treturn promises;\n\t}, []));\n};","// This function allow to reference async chunks and sibling chunks for the entrypoint\n__webpack_require__.u = (chunkId) => {\n\t// return url for filenames based on template\n\treturn \"\" + chunkId + \".js\";\n};","__webpack_require__.g = (function() {\n\tif (typeof globalThis === 'object') return globalThis;\n\ttry {\n\t\treturn this || new Function('return this')();\n\t} catch (e) {\n\t\tif (typeof window === 'object') return window;\n\t}\n})();","__webpack_require__.o = (obj, prop) => (Object.prototype.hasOwnProperty.call(obj, prop))","var scriptUrl;\nif (__webpack_require__.g.importScripts) scriptUrl = __webpack_require__.g.location + \"\";\nvar document = __webpack_require__.g.document;\nif (!scriptUrl && document) {\n\tif (document.currentScript)\n\t\tscriptUrl = document.currentScript.src;\n\tif (!scriptUrl) {\n\t\tvar scripts = document.getElementsByTagName(\"script\");\n\t\tif(scripts.length) scriptUrl = scripts[scripts.length - 1].src\n\t}\n}\n// When supporting browsers where an automatic publicPath is not supported you must specify an output.publicPath manually via configuration\n// or pass an empty string (\"\") and set the __webpack_public_path__ variable from your code to use your own logic.\nif (!scriptUrl) throw new Error(\"Automatic publicPath is not supported in this browser\");\nscriptUrl = scriptUrl.replace(/#.*$/, \"\").replace(/\\?.*$/, \"\").replace(/\\/[^\\/]+$/, \"/\");\n__webpack_require__.p = scriptUrl;","// no baseURI\n\n// object to store loaded chunks\n// \"1\" means \"already loaded\"\nvar installedChunks = {\n\t925: 1\n};\n\n// importScripts chunk loading\nvar installChunk = (data) => {\n\tvar [chunkIds, moreModules, runtime] = data;\n\tfor(var moduleId in moreModules) {\n\t\tif(__webpack_require__.o(moreModules, moduleId)) {\n\t\t\t__webpack_require__.m[moduleId] = moreModules[moduleId];\n\t\t}\n\t}\n\tif(runtime) runtime(__webpack_require__);\n\twhile(chunkIds.length)\n\t\tinstalledChunks[chunkIds.pop()] = 1;\n\tparentChunkLoadingFunction(data);\n};\n__webpack_require__.f.i = (chunkId, promises) => {\n\t// \"1\" is the signal for \"already loaded\"\n\tif(!installedChunks[chunkId]) {\n\t\tif(true) { // all chunks have JS\n\t\t\timportScripts(__webpack_require__.p + __webpack_require__.u(chunkId));\n\t\t}\n\t}\n};\n\nvar chunkLoadingGlobal = self[\"webpackChunkbio\"] = self[\"webpackChunkbio\"] || [];\nvar parentChunkLoadingFunction = chunkLoadingGlobal.push.bind(chunkLoadingGlobal);\nchunkLoadingGlobal.push = installChunk;\n\n// no HMR\n\n// no HMR manifest","// run startup\nvar __webpack_exports__ = __webpack_require__.x();\n"],"names":["deferred","next","DistanceMatrix","data","this","_data","size","_size","constructor","undefined","Error","Math","sqrt","length","floor","dataLength","Float32Array","_linearizeIJ","i","j","get","set","value","static","list","method","res","square","pow","add","other","normalize","min","max","range","MmDistanceFunctionsNames","mmDistanceFunctions","HAMMING","hamming","LEVENSHTEIN","levenstein","NEEDLEMANN_WUNSCH","n","onmessage","event","values","fnName","distanceMatrix","calc","distanceMatrixData","e","error","postMessage","__webpack_module_cache__","__webpack_require__","moduleId","cachedModule","exports","module","__webpack_modules__","m","x","__webpack_exports__","O","result","chunkIds","fn","priority","notFulfilled","Infinity","fulfilled","Object","keys","every","key","splice","r","d","definition","o","defineProperty","enumerable","f","chunkId","Promise","all","reduce","promises","u","g","globalThis","Function","window","obj","prop","prototype","hasOwnProperty","call","scriptUrl","importScripts","location","document","currentScript","src","scripts","getElementsByTagName","replace","p","installedChunks","chunkLoadingGlobal","self","parentChunkLoadingFunction","push","bind","moreModules","runtime","pop","then"],"sourceRoot":""}