@datagrok/bio 2.25.9 → 2.25.10

package/src/package.ts

@@ -123,7 +123,7 @@ export class PackageFunctions {
     return await MonomerLibManager.getInstance();
   }
 
-  @grok.decorators.init({})
+  @grok.decorators.init({tags: ['init']})
   static async initBio(): Promise<void> {
     if (initBioPromise == null)
       initBioPromise = initBioInt();
@@ -131,7 +131,10 @@ export class PackageFunctions {
     await initBioPromise;
   }
 
-  @grok.decorators.func({tags: ['tooltip']})
+  @grok.decorators.func({
+    meta: {role: 'tooltip'},
+    tags: ['tooltip']
+  })
   static sequenceTooltip(
     @grok.decorators.param({options: {semType: 'Macromolecule'}}) col: DG.Column): DG.Widget<any> {
     const resWidget = new MacromoleculeColumnWidget(col, _package.seqHelper);
@@ -170,7 +173,7 @@ export class PackageFunctions {
 
   // -- Panels --
 
-  @grok.decorators.panel({name: 'Bioinformatics | Get Region', description: 'Creates a new column with sequences of the region between start and end'})
+  @grok.decorators.panel({name: 'Bioinformatics | Get Region', description: 'Creates a new column with sequences of the region between start and end', tags: ['panel']})
   static getRegionPanel(
     @grok.decorators.param({type: 'column', options: {semType: 'Macromolecule'}}) seqCol: DG.Column<string>): DG.Widget {
     const funcName: string = 'getRegionTopMenu';
@@ -182,7 +185,11 @@ export class PackageFunctions {
     return funcEditor.widget();
   }
 
-  @grok.decorators.panel({name: 'Bioinformatics | Manage Monomer Libraries', tags: ['exclude-actions-panel']})
+  @grok.decorators.panel({
+    name: 'Bioinformatics | Manage Monomer Libraries',
+    meta: {'exclude-actions-panel': 'true'},
+    tags: ['exclude-actions-panel']
+  })
   static async libraryPanel(
     @grok.decorators.param({name: 'seqColumn', options: {semType: 'Macromolecule'}}) _seqColumn: DG.Column): Promise<DG.Widget> {
     // return getLibraryPanelUI();
@@ -191,7 +198,7 @@ export class PackageFunctions {
 
   // -- Func Editors --
 
-  @grok.decorators.editor({})
+  @grok.decorators.editor({tags: ['editor']})
   static GetRegionEditor(call: DG.FuncCall): void {
     try {
       const funcEditor = new GetRegionFuncEditor(call, _package.seqHelper);
@@ -204,7 +211,7 @@ export class PackageFunctions {
     }
   }
 
-  @grok.decorators.editor({})
+  @grok.decorators.editor({tags: ['editor']})
   static SplitToMonomersEditor(call: DG.FuncCall): void {
     const funcEditor = new SplitToMonomersFunctionEditor();
     ui.dialog({title: 'Split to Monomers'})
@@ -215,7 +222,7 @@ export class PackageFunctions {
       .show();
   }
 
-  @grok.decorators.editor({})
+  @grok.decorators.editor({tags: ['editor']})
   static SequenceSpaceEditor(call: DG.FuncCall) {
     const funcEditor = new DimReductionBaseEditor({semtype: DG.SEMTYPE.MACROMOLECULE});
     const dialog = ui.dialog({title: 'Sequence Space'})
@@ -237,7 +244,7 @@ export class PackageFunctions {
     dialog.show();
   }
 
-  @grok.decorators.editor({})
+  @grok.decorators.editor({tags: ['editor']})
   static SeqActivityCliffsEditor(call: DG.FuncCall) {
     const funcEditor = new ActivityCliffsEditor({semtype: DG.SEMTYPE.MACROMOLECULE});
     const dialog = ui.dialog({title: 'Activity Cliffs'})
@@ -267,7 +274,8 @@ export class PackageFunctions {
     tags: ['cellRenderer'],
     meta: {
       cellType: 'sequence',
-      columnTags: 'quality=Macromolecule, units=custom'
+      columnTags: 'quality=Macromolecule, units=custom',
+      role: 'cellRenderer'
     },
     outputs: [{type: 'grid_cell_renderer', name: 'result'}]
   })
@@ -280,7 +288,8 @@ export class PackageFunctions {
     tags: ['cellRenderer'],
     meta: {
       cellType: 'sequence',
-      columnTags: 'quality=Macromolecule, units=fasta'
+      columnTags: 'quality=Macromolecule, units=fasta',
+      role: 'cellRenderer'
     },
     outputs: [{type: 'grid_cell_renderer', name: 'result'}]
   })
@@ -293,7 +302,8 @@ export class PackageFunctions {
     tags: ['cellRenderer'],
     meta: {
       cellType: 'sequence',
-      columnTags: 'quality=Macromolecule, units=separator'
+      columnTags: 'quality=Macromolecule, units=separator',
+      role: 'cellRenderer'
     },
     outputs: [{type: 'grid_cell_renderer', name: 'result'}]
   })
@@ -306,7 +316,8 @@ export class PackageFunctions {
     tags: ['cellRenderer'],
     meta: {
       cellType: 'sequence',
-      columnTags: 'quality=Macromolecule, units=biln'
+      columnTags: 'quality=Macromolecule, units=biln',
+      role: 'cellRenderer'
     },
     outputs: [{type: 'grid_cell_renderer', name: 'result'}]
   })
@@ -316,8 +327,9 @@ export class PackageFunctions {
 
   @grok.decorators.func({
     name: 'refineNotationProviderForBiln',
+    outputs: [{type: 'bool', name: 'result'}],
     tags: ['notationRefiner'],
-    outputs: [{type: 'bool', name: 'result'}]
+    meta: {role: 'notationRefiner'},
   })
   static refineNotationProviderForBiln(
     @grok.decorators.param({type: 'column'}) col: DG.Column<string>,
@@ -329,9 +341,15 @@ export class PackageFunctions {
     const reCons = Object.keys(stats.freq).some((om) => om.match(/^.+\(\d{1,2},\d{1,2}\)$/));
     if (!reCons) {
       // biln might also encode monomers with hyphens in names encoded by []
+      // but in freqs, we reseive split sequence with without this knowledge, so might get smth like '[OM1', 'END2]' etc
       // here we know that there are no monomers with connections like (1,2) in names, so we can check for []
-      const reBrackets = Object.keys(stats.freq).some((om) => om.includes('[') || om.includes(']'));
-      if (!reBrackets)
+
+      const startBrackets = Object.keys(stats.freq).filter((om) => om.startsWith('['));
+      const endBrackets = Object.keys(stats.freq).filter((om) => om.endsWith(']'));
+      const midBrackets = Object.keys(stats.freq).filter((om) => (om.includes('[') || om.includes(']')) && !om.startsWith('[') && !om.endsWith(']'));
+      if (midBrackets.length > 0 || startBrackets.length == 0 || endBrackets.length == 0)
+        return false;
+      if (Object.keys(stats.freq).some((om) => om.startsWith('*') || om.startsWith('$') || om.startsWith('@') || om.startsWith('%')))
         return false;
     }
     // refine the notation provider
@@ -346,13 +364,16 @@ export class PackageFunctions {
 
   // // -- Property panels --
 
-  @grok.decorators.panel({name: 'Bioinformatics | Sequence Renderer'})
+  @grok.decorators.panel({name: 'Bioinformatics | Sequence Renderer', tags: ['panel']})
   static macroMolColumnPropertyPanel(
     @grok.decorators.param({options: {semType: 'Macromolecule'}}) molColumn: DG.Column): DG.Widget {
     return getMacromoleculeColumnPropertyPanel(molColumn);
   }
 
-  @grok.decorators.panel({name: 'Composition analysis', tags: ['bio', 'widgets']})
+  @grok.decorators.panel({name: 'Composition analysis',
+    tags: ['bio', 'widgets', 'panel'],
+    meta: {role: 'widgets', domain: 'bio'},
+  })
   static compositionAnalysisWidget(
     @grok.decorators.param({options: {semType: 'Macromolecule'}}) sequence: DG.SemanticValue): DG.Widget {
     return getCompositionAnalysisWidget(sequence, _package.monomerLib, _package.seqHelper);
@@ -363,7 +384,8 @@ export class PackageFunctions {
     tags: ['cellRenderer'],
     meta: {
       cellType: 'MacromoleculeDifference',
-      columnTags: 'quality=MacromoleculeDifference'
+      columnTags: 'quality=MacromoleculeDifference',
+      role: 'cellRenderer'
     },
     outputs: [{type: 'grid_cell_renderer', name: 'result'}]
   })
@@ -388,8 +410,8 @@ export class PackageFunctions {
   @grok.decorators.panel({
     name: 'WebLogo',
     description: 'WebLogo',
-    tags: ['viewer'],
-    meta: {icon: 'files/icons/weblogo-viewer.svg'},
+    tags: ['viewer', 'panel'],
+    meta: {icon: 'files/icons/weblogo-viewer.svg', role: 'viewer'},
     outputs: [{type: 'viewer', name: 'result'}]
   })
   static webLogoViewer() {
@@ -400,7 +422,7 @@ export class PackageFunctions {
     name: 'VdRegions',
     description: 'V-Domain regions viewer',
     tags: ['viewer'],
-    meta: {icon: 'files/icons/vdregions-viewer.svg'},
+    meta: {icon: 'files/icons/vdregions-viewer.svg', role: 'viewer'},
     outputs: [{type: 'viewer', name: 'result'}],
   })
   static vdRegionsViewer() {
@@ -531,7 +553,8 @@ export class PackageFunctions {
     meta: {
       supportedSemTypes: 'Macromolecule',
       supportedTypes: 'string',
-      supportedDistanceFunctions: 'Hamming,Levenshtein,Monomer chemical distance,Needlemann-Wunsch'
+      supportedDistanceFunctions: 'Hamming,Levenshtein,Monomer chemical distance,Needlemann-Wunsch',
+      role: 'dim-red-preprocessing-function'
     },
     outputs: [{type: 'object', name: 'result'}],
   })
@@ -695,7 +718,8 @@ export class PackageFunctions {
 
   @grok.decorators.panel({
     name: 'Molecular Structure',
-    tags: ['bio', 'widgets']
+    tags: ['bio', 'widgets', 'panel'],
+    meta: {role: 'widgets', domain: 'bio'},
   })
   static async toAtomicLevelPanel(
     @grok.decorators.param({name: 'sequence', type: 'semantic_value', options: {semType: 'Macromolecule'}})
@@ -748,7 +772,8 @@ export class PackageFunctions {
 
   @grok.decorators.panel({
     name: 'Molecular 3D Structure',
-    tags: ['bio', 'widgets']
+    tags: ['bio', 'widgets', 'panel'],
+    meta: {role: 'widgets', domain: 'bio'},
   })
   static async sequence3dStructureWidget(
     @grok.decorators.param({
@@ -763,7 +788,8 @@ export class PackageFunctions {
   @grok.decorators.panel({
     name: 'MSA',
     description: 'Performs multiple sequence alignment',
-    tags: ['bio'],
+    tags: ['bio', 'panel'],
+    meta: {domain: 'bio'},
     'top-menu': 'Bio | Analyze | MSA...'
   })
   static multipleSequenceAlignmentDialog(): void {
@@ -784,7 +810,7 @@ export class PackageFunctions {
   @grok.decorators.func({
     name: 'Multiple Sequence Alignment',
     description: 'Multiple sequence alignment',
-    tags: ['bio']
+    meta: {domain: 'bio'}
   })
   static async alignSequences(
     @grok.decorators.param({type: 'column', options: {semType: 'Macromolecule'}}) sequenceCol: DG.Column<string> | null = null,
@@ -862,6 +888,7 @@ export class PackageFunctions {
 
   @grok.decorators.fileHandler({
     name: 'importFasta',
+    tags: ['fileHandler'],
     description: 'Opens FASTA file',
     ext: 'fasta, fna, ffn, faa, frn, fa, fst',
   })
@@ -874,6 +901,7 @@ export class PackageFunctions {
 
   @grok.decorators.fileHandler({
     name: 'importBam',
+    tags: ['fileHandler'],
     description: 'Opens Bam file',
     ext: 'bam, bai',
   })
@@ -911,7 +939,8 @@ export class PackageFunctions {
     tags: ['cellRenderer'],
     meta: {
       cellType: 'Monomer',
-      columnTags: 'quality=Monomer'
+      columnTags: 'quality=Monomer',
+      role: 'cellRenderer'
     },
     outputs: [{type: 'grid_cell_renderer', name: 'result'}]
   })
@@ -1003,10 +1032,8 @@ export class PackageFunctions {
 
   @grok.decorators.func({
     name: 'Sequence Similarity Search',
+    meta: {icon: 'files/icons/sequence-similarity-viewer.svg', role: 'viewer'},
     tags: ['viewer'],
-    meta: {
-      icon: 'files/icons/sequence-similarity-viewer.svg'
-    },
     outputs: [{name: 'result', type: 'viewer'}]
   })
   static similaritySearchViewer(): SequenceSimilarityViewer {
@@ -1028,9 +1055,7 @@ export class PackageFunctions {
   @grok.decorators.func({
     name: 'Sequence Diversity Search',
     tags: ['viewer'],
-    meta: {
-      icon: 'files/icons/sequence-diversity-viewer.svg'
-    },
+    meta: {icon: 'files/icons/sequence-diversity-viewer.svg', role: 'viewer'},
     outputs: [{name: 'result', type: 'viewer'}]
   })
   static diversitySearchViewer(): SequenceDiversityViewer {
@@ -1050,7 +1075,8 @@ export class PackageFunctions {
   }
 
   @grok.decorators.editor({
-    name: 'SearchSubsequenceEditor'
+    name: 'SearchSubsequenceEditor',
+    tags: ['editor'],
   })
   static searchSubsequenceEditor(call: DG.FuncCall) {
     const columns = getMacromoleculeColumns();
@@ -1131,6 +1157,7 @@ export class PackageFunctions {
   }
 
   @grok.decorators.app({
+    tags: ['app'],
     name: 'Manage Monomer Libraries',
     browsePath: 'Peptides',
     icon: 'files/icons/monomers.png',
@@ -1144,7 +1171,7 @@ export class PackageFunctions {
   //   return
   // }
 
-  @grok.decorators.func({name: 'Monomer Manager Tree Browser', meta: {role: 'appTreeBrowser'}})
+  @grok.decorators.func({name: 'Monomer Manager Tree Browser', meta: {role: 'appTreeBrowser', app: 'Manage Monomer Libraries'}})
   static async manageMonomerLibrariesViewTreeBrowser(treeNode: DG.TreeViewGroup) {
     const libraries = (await (await MonomerLibManager.getInstance()).getAvaliableLibraryNames());
     libraries.forEach((libName) => {
@@ -1168,7 +1195,7 @@ export class PackageFunctions {
     name: 'Bio Substructure Filter',
     description: 'Substructure filter for macromolecules',
     tags: ['filter'],
-    meta: {semType: 'Macromolecule'},
+    meta: {semType: 'Macromolecule', role: 'filter'},
     outputs: [{type: 'filter', name: 'result'}],
   })
   static bioSubstructureFilter(): BioSubstructureFilter {

package/src/substructure-search/substructure-search.ts

@@ -2,7 +2,7 @@ import * as grok from 'datagrok-api/grok';
 import * as ui from 'datagrok-api/ui';
 import * as DG from 'datagrok-api/dg';
 
-import {delay} from '@datagrok-libraries/utils/src/test';
+import {delay} from '@datagrok-libraries/test/src/test';
 import {TAGS as bioTAGS, NOTATION} from '@datagrok-libraries/bio/src/utils/macromolecule';
 import {ISeqHelper} from '@datagrok-libraries/bio/src/utils/seq-helper';
 

package/src/tests/Palettes-test.ts

@@ -2,7 +2,7 @@ import * as grok from 'datagrok-api/grok';
 import * as ui from 'datagrok-api/ui';
 import * as DG from 'datagrok-api/dg';
 
-import {category, test, expect} from '@datagrok-libraries/utils/src/test';
+import {category, test, expect} from '@datagrok-libraries/test/src/test';
 
 import {_testPaletteN, _testPaletteAA} from '@datagrok-libraries/bio/src/tests/palettes-tests';
 import {AminoacidsPalettes} from '@datagrok-libraries/bio/src/aminoacids';

package/src/tests/WebLogo-layout-tests.ts

@@ -4,7 +4,7 @@ import * as ui from 'datagrok-api/ui';
 
 import wu from 'wu';
 
-import {category, delay, expect, test} from '@datagrok-libraries/utils/src/test';
+import {category, delay, expect, test} from '@datagrok-libraries/test/src/test';
 
 import {awaitGrid} from './utils';
 import {Debounces, WebLogoViewer} from '../viewers/web-logo-viewer';

package/src/tests/WebLogo-positions-test.ts

@@ -1,7 +1,7 @@
 import * as grok from 'datagrok-api/grok';
 import * as DG from 'datagrok-api/dg';
 
-import {before, category, expect, expectArray, test, testEvent} from '@datagrok-libraries/utils/src/test';
+import {before, category, expect, expectArray, test, testEvent} from '@datagrok-libraries/test/src/test';
 import {ALPHABET, NOTATION, TAGS as bioTAGS} from '@datagrok-libraries/bio/src/utils/macromolecule';
 import {getSeqHelper, ISeqHelper} from '@datagrok-libraries/bio/src/utils/seq-helper';
 import {GAP_SYMBOL} from '@datagrok-libraries/bio/src/utils/macromolecule/consts';

package/src/tests/WebLogo-project-tests.ts

@@ -4,7 +4,7 @@ import * as ui from 'datagrok-api/ui';
 
 import wu from 'wu';
 
-import {category, delay, expect, test, testViewer} from '@datagrok-libraries/utils/src/test';
+import {category, delay, expect, test, testViewer} from '@datagrok-libraries/test/src/test';
 
 import {awaitGrid} from './utils';
 import {WebLogoViewer} from '../viewers/web-logo-viewer';

package/src/tests/_first-tests.ts

@@ -1,6 +1,6 @@
 import * as DG from 'datagrok-api/dg';
 
-import {category, test} from '@datagrok-libraries/utils/src/test';
+import {category, test} from '@datagrok-libraries/test/src/test';
 
 category('_first', () => {
   /** The first test of the package to evaluate problems with imports. */

package/src/tests/activity-cliffs-tests.ts

@@ -1,7 +1,7 @@
 import * as grok from 'datagrok-api/grok';
 import * as DG from 'datagrok-api/dg';
 
-import {after, before, category, test} from '@datagrok-libraries/utils/src/test';
+import {after, before, category, test} from '@datagrok-libraries/test/src/test';
 
 import {readDataframe} from './utils';
 import {_testActivityCliffsOpen} from './activity-cliffs-utils';

package/src/tests/activity-cliffs-utils.ts

@@ -1,7 +1,7 @@
 import * as DG from 'datagrok-api/dg';
 import * as grok from 'datagrok-api/grok';
 
-import {awaitCheck, expect} from '@datagrok-libraries/utils/src/test';
+import {awaitCheck, expect} from '@datagrok-libraries/test/src/test';
 import {MmDistanceFunctionsNames} from '@datagrok-libraries/ml/src/macromolecule-distance-functions';
 import {BitArrayMetrics} from '@datagrok-libraries/ml/src/typed-metrics';
 import {BYPASS_LARGE_DATA_WARNING} from '@datagrok-libraries/ml/src/functionEditors/consts';

package/src/tests/biln-tests.ts

@@ -5,7 +5,7 @@ import * as grok from 'datagrok-api/grok';
 import * as ui from 'datagrok-api/ui';
 import * as DG from 'datagrok-api/dg';
 
-import {category, test, expect, before} from '@datagrok-libraries/utils/src/test';
+import {category, test, expect, before} from '@datagrok-libraries/test/src/test';
 
 import {ALIGNMENT, ALPHABET, NOTATION, TAGS as bioTAGS} from '@datagrok-libraries/bio/src/utils/macromolecule';
 import {ISeqHelper, getSeqHelper} from '@datagrok-libraries/bio/src/utils/seq-helper';

package/src/tests/bio-tests.ts

@@ -2,7 +2,7 @@ import * as grok from 'datagrok-api/grok';
 import * as ui from 'datagrok-api/ui';
 import * as DG from 'datagrok-api/dg';
 
-import {category, test, expect, expectObject, expectArray, before} from '@datagrok-libraries/utils/src/test';
+import {category, test, expect, expectObject, expectArray, before} from '@datagrok-libraries/test/src/test';
 import {
   NOTATION, getAlphabetSimilarity, monomerToShort, pickUpPalette, splitterAsFasta, splitterAsHelm,
 } from '@datagrok-libraries/bio/src/utils/macromolecule';

package/src/tests/checkInputColumn-tests.ts

@@ -2,7 +2,7 @@ import * as grok from 'datagrok-api/grok';
 import * as ui from 'datagrok-api/ui';
 import * as DG from 'datagrok-api/dg';
 
-import {category, test, expect, before} from '@datagrok-libraries/utils/src/test';
+import {category, test, expect, before} from '@datagrok-libraries/test/src/test';
 
 import {ALPHABET, NOTATION, TAGS as bioTAGS} from '@datagrok-libraries/bio/src/utils/macromolecule';
 import {getSeqHelper, ISeqHelper} from '@datagrok-libraries/bio/src/utils/seq-helper';

package/src/tests/converters-test.ts

@@ -3,7 +3,7 @@
 import * as DG from 'datagrok-api/dg';
 import * as grok from 'datagrok-api/grok';
 
-import {before, category, expect, expectArray, test} from '@datagrok-libraries/utils/src/test';
+import {before, category, expect, expectArray, test} from '@datagrok-libraries/test/src/test';
 import {NOTATION, TAGS as bioTAGS} from '@datagrok-libraries/bio/src/utils/macromolecule';
 import {ISeqHelper, getSeqHelper} from '@datagrok-libraries/bio/src/utils/seq-helper';
 import {ISeqHandler} from '@datagrok-libraries/bio/src/utils/macromolecule/seq-handler';

package/src/tests/detectors-benchmark-tests.ts

@@ -3,7 +3,7 @@ import * as grok from 'datagrok-api/grok';
 import * as ui from 'datagrok-api/ui';
 import * as DG from 'datagrok-api/dg';
 
-import {before, category, test, expect} from '@datagrok-libraries/utils/src/test';
+import {before, category, test, expect} from '@datagrok-libraries/test/src/test';
 import {ALPHABET, getAlphabet, NOTATION} from '@datagrok-libraries/bio/src/utils/macromolecule';
 import {ISeqHelper, getSeqHelper} from '@datagrok-libraries/bio/src/utils/seq-helper';
 

package/src/tests/detectors-tests.ts

@@ -4,7 +4,7 @@ import * as grok from 'datagrok-api/grok';
 import * as ui from 'datagrok-api/ui';
 import * as DG from 'datagrok-api/dg';
 
-import {category, test, expect, before} from '@datagrok-libraries/utils/src/test';
+import {category, test, expect, before} from '@datagrok-libraries/test/src/test';
 
 import {ALIGNMENT, ALPHABET, NOTATION, TAGS as bioTAGS} from '@datagrok-libraries/bio/src/utils/macromolecule';
 import {ISeqHelper, getSeqHelper} from '@datagrok-libraries/bio/src/utils/seq-helper';

package/src/tests/detectors-weak-and-likely-tests.ts

@@ -2,7 +2,7 @@ import * as grok from 'datagrok-api/grok';
 import * as ui from 'datagrok-api/ui';
 import * as DG from 'datagrok-api/dg';
 
-import {before, category, test} from '@datagrok-libraries/utils/src/test';
+import {before, category, test} from '@datagrok-libraries/test/src/test';
 import {ALIGNMENT, ALPHABET, NOTATION} from '@datagrok-libraries/bio/src/utils/macromolecule';
 import {ISeqHelper, getSeqHelper} from '@datagrok-libraries/bio/src/utils/seq-helper';
 

package/src/tests/fasta-export-tests.ts

@@ -2,7 +2,7 @@ import * as DG from 'datagrok-api/dg';
 import * as ui from 'datagrok-api/ui';
 import * as grok from 'datagrok-api/grok';
 
-import {before, category, expect, expectArray, test} from '@datagrok-libraries/utils/src/test';
+import {before, category, expect, expectArray, test} from '@datagrok-libraries/test/src/test';
 import {NOTATION} from '@datagrok-libraries/bio/src/utils/macromolecule';
 import {ISeqHelper, getSeqHelper} from '@datagrok-libraries/bio/src/utils/seq-helper';
 

package/src/tests/fasta-handler-test.ts

@@ -3,7 +3,7 @@ import * as grok from 'datagrok-api/grok';
 import * as ui from 'datagrok-api/ui';
 import * as DG from 'datagrok-api/dg';
 
-import {category, expectArray, test} from '@datagrok-libraries/utils/src/test';
+import {category, expectArray, test} from '@datagrok-libraries/test/src/test';
 import {FastaFileHandler} from '@datagrok-libraries/bio/src/utils/fasta-handler';
 
 

package/src/tests/helm-tests.ts

@@ -4,7 +4,7 @@ import * as DG from 'datagrok-api/dg';
 
 import wu from 'wu';
 
-import {before, category, expect, expectArray, test} from '@datagrok-libraries/utils/src/test';
+import {before, category, expect, expectArray, test} from '@datagrok-libraries/test/src/test';
 import {Helm} from '../utils/helm-to-molfile/converter/helm';
 
 category('helm', () => {

package/src/tests/lib-tests.ts

@@ -3,7 +3,7 @@ import * as grok from 'datagrok-api/grok';
 import * as ui from 'datagrok-api/ui';
 import * as DG from 'datagrok-api/dg';
 
-import {category} from '@datagrok-libraries/utils/src/test';
+import {category} from '@datagrok-libraries/test/src/test';
 
 category('monomer lib', () => {
   //   test('monomerManager', async() => {

package/src/tests/mm-distance-tests.ts

@@ -2,7 +2,7 @@ import * as grok from 'datagrok-api/grok';
 import * as ui from 'datagrok-api/ui';
 import * as DG from 'datagrok-api/dg';
 
-import {before, category, expect, test} from '@datagrok-libraries/utils/src/test';
+import {before, category, expect, test} from '@datagrok-libraries/test/src/test';
 import {ISeqHandler} from '@datagrok-libraries/bio/src/utils/macromolecule/seq-handler';
 import {ISeqHelper, getSeqHelper} from '@datagrok-libraries/bio/src/utils/seq-helper';
 import {MmDistanceFunctionsNames, mmDistanceFunctions}

package/src/tests/monomer-libraries-tests.ts

@@ -2,7 +2,7 @@ import * as grok from 'datagrok-api/grok';
 import * as DG from 'datagrok-api/dg';
 import * as ui from 'datagrok-api/ui';
 
-import {test, after, before, category, expect, expectObject} from '@datagrok-libraries/utils/src/test';
+import {test, after, before, category, expect, expectObject} from '@datagrok-libraries/test/src/test';
 import {getMonomerLibHelper, IMonomerLibHelper} from '@datagrok-libraries/bio/src/types/monomer-library';
 import {
   getUserLibSettings, setUserLibSettings

package/src/tests/msa-tests.ts

@@ -3,7 +3,7 @@ import * as grok from 'datagrok-api/grok';
 import * as ui from 'datagrok-api/ui';
 import * as DG from 'datagrok-api/dg';
 
-import {before, category, expect, expectArray, test} from '@datagrok-libraries/utils/src/test';
+import {before, category, expect, expectArray, test} from '@datagrok-libraries/test/src/test';
 import {ALIGNMENT, ALPHABET, NOTATION, TAGS as bioTAGS} from '@datagrok-libraries/bio/src/utils/macromolecule';
 import {ISeqHelper, getSeqHelper} from '@datagrok-libraries/bio/src/utils/seq-helper';
 

package/src/tests/pepsea-tests.ts

@@ -1,6 +1,6 @@
 import * as DG from 'datagrok-api/dg';
 
-import {before, category, expect, expectArray, test} from '@datagrok-libraries/utils/src/test';
+import {before, category, expect, expectArray, test} from '@datagrok-libraries/test/src/test';
 import {runPepsea} from '../utils/pepsea';
 import {TestLogger} from './utils/test-logger';
 import {errInfo} from '@datagrok-libraries/bio/src/utils/err-info';

package/src/tests/renderers-monomer-placer-tests.ts

@@ -5,7 +5,7 @@ import * as ui from 'datagrok-api/ui';
 
 import wu from 'wu';
 
-import {after, before, category, expect, expectArray, test} from '@datagrok-libraries/utils/src/test';
+import {after, before, category, expect, expectArray, test} from '@datagrok-libraries/test/src/test';
 import {MonomerPlacer, hitBounds} from '@datagrok-libraries/bio/src/utils/cell-renderer-monomer-placer';
 import {monomerToShort} from '@datagrok-libraries/bio/src/utils/macromolecule';
 import {getMonomerLibHelper, IMonomerLibHelper} from '@datagrok-libraries/bio/src/types/monomer-library';

package/src/tests/renderers-test.ts

@@ -6,7 +6,7 @@ import * as ui from 'datagrok-api/ui';
 import $ from 'cash-dom';
 import {fromEvent} from 'rxjs';
 
-import {category, expect, test, delay, testEvent, before} from '@datagrok-libraries/utils/src/test';
+import {category, expect, test, delay, testEvent, before} from '@datagrok-libraries/test/src/test';
 import {ALIGNMENT, ALPHABET, NOTATION, TAGS as bioTAGS} from '@datagrok-libraries/bio/src/utils/macromolecule';
 import {ISeqHelper, getSeqHelper} from '@datagrok-libraries/bio/src/utils/seq-helper';
 import {ISeqHandler} from '@datagrok-libraries/bio/src/utils/macromolecule/seq-handler';

package/src/tests/scoring.ts

@@ -4,7 +4,7 @@ import * as DG from 'datagrok-api/dg';
 
 import wu from 'wu';
 
-import {category, test, expectFloat, before, after, expect} from '@datagrok-libraries/utils/src/test';
+import {category, test, expectFloat, before, after, expect} from '@datagrok-libraries/test/src/test';
 import {NOTATION} from '@datagrok-libraries/bio/src/utils/macromolecule';
 import {IMonomerLibHelper, getMonomerLibHelper} from '@datagrok-libraries/bio/src/types/monomer-library';
 

package/src/tests/seq-handler-get-helm-tests.ts

@@ -2,7 +2,7 @@ import * as grok from 'datagrok-api/grok';
 import * as ui from 'datagrok-api/ui';
 import * as DG from 'datagrok-api/dg';
 
-import {after, before, category, expect, test} from '@datagrok-libraries/utils/src/test';
+import {after, before, category, expect, test} from '@datagrok-libraries/test/src/test';
 import {ISeqHelper, getSeqHelper} from '@datagrok-libraries/bio/src/utils/seq-helper';
 import {NOTATION} from '@datagrok-libraries/bio/src/utils/macromolecule';
 import {getMonomerLibHelper, IMonomerLibHelper} from '@datagrok-libraries/bio/src/types/monomer-library';

package/src/tests/seq-handler-get-region-tests.ts

@@ -2,7 +2,7 @@
 import * as grok from 'datagrok-api/grok';
 import * as DG from 'datagrok-api/dg';
 
-import {before, category, expect, expectArray, test} from '@datagrok-libraries/utils/src/test';
+import {before, category, expect, expectArray, test} from '@datagrok-libraries/test/src/test';
 import {ISeqHelper, getSeqHelper} from '@datagrok-libraries/bio/src/utils/seq-helper';
 import {ALPHABET, NOTATION, TAGS} from '@datagrok-libraries/bio/src/utils/macromolecule';
 

package/src/tests/seq-handler-splitted-tests.ts

@@ -3,7 +3,7 @@ import * as DG from 'datagrok-api/dg';
 
 import wu from 'wu';
 
-import {before, category, expect, expectArray, test} from '@datagrok-libraries/utils/src/test';
+import {before, category, expect, expectArray, test} from '@datagrok-libraries/test/src/test';
 import {ISeqHelper, getSeqHelper} from '@datagrok-libraries/bio/src/utils/seq-helper';
 import {NOTATION} from '@datagrok-libraries/bio/src/utils/macromolecule';
 import {GapOriginals} from '@datagrok-libraries/bio/src/utils/macromolecule/consts';

package/src/tests/seq-handler-tests.ts

@@ -2,7 +2,7 @@ import * as grok from 'datagrok-api/grok';
 import * as ui from 'datagrok-api/ui';
 import * as DG from 'datagrok-api/dg';
 
-import {category, test, expect, before} from '@datagrok-libraries/utils/src/test';
+import {category, test, expect, before} from '@datagrok-libraries/test/src/test';
 import {ALPHABET, NOTATION} from '@datagrok-libraries/bio/src/utils/macromolecule';
 import {ISeqHelper, getSeqHelper} from '@datagrok-libraries/bio/src/utils/seq-helper';
 import {ISeqHandler} from '@datagrok-libraries/bio/src/utils/macromolecule/seq-handler';

package/src/tests/sequence-space-test.ts

@@ -2,7 +2,7 @@ import * as grok from 'datagrok-api/grok';
 import * as ui from 'datagrok-api/ui';
 import * as DG from 'datagrok-api/dg';
 
-import {category, test} from '@datagrok-libraries/utils/src/test';
+import {category, test} from '@datagrok-libraries/test/src/test';
 import {readDataframe} from './utils';
 import {_testSequenceSpaceReturnsResult} from './sequence-space-utils';
 import {DimReductionMethods} from '@datagrok-libraries/ml/src/multi-column-dimensionality-reduction/types';