@datagrok/bio 2.25.14 → 2.25.16

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Files changed (15) hide show
  1. package/CHANGELOG.md +6 -0
  2. package/css/monomer-collections.css +184 -0
  3. package/dist/package-test.js +3 -3
  4. package/dist/package-test.js.map +1 -1
  5. package/dist/package.js +3 -3
  6. package/dist/package.js.map +1 -1
  7. package/files/monomer-collections/Canonical AAs.json +27 -0
  8. package/package.json +2 -2
  9. package/src/package.g.ts +10 -0
  10. package/src/package.ts +11 -0
  11. package/src/utils/monomer-lib/lib-manager.ts +36 -1
  12. package/src/utils/monomer-lib/monomer-collections-view.ts +424 -0
  13. package/src/utils/monomer-lib/monomer-manager/monomer-manager.ts +67 -5
  14. package/test-console-output-1.log +474 -471
  15. package/test-record-1.mp4 +0 -0
package/CHANGELOG.md CHANGED
@@ -1,5 +1,11 @@
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  # Bio changelog
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+ ## 2.25.15 (2026-02-26)
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+
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+ * Monomer collections
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+ * Handling edge cases of r groups in monomer libraries
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+ * Fixing some issues with custom notation provider
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+
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  ## 2.25.12 (2026-02-20)
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  * Isotope support in monomers
package/css/monomer-collections.css ADDED
@@ -0,0 +1,184 @@
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+ .monomer-collections-view {
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+ padding: 16px;
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+ overflow-y: auto;
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+ height: 100%;
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+ }
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+
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+ .monomer-collections-grid {
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+ display: flex;
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+ flex-wrap: wrap;
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+ gap: 16px;
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+ align-content: flex-start;
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+ }
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+
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+ .monomer-collection-card {
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+ width: 20%;
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+ min-width: 240px;
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+ height: 300px;
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+ border: 1px solid var(--grey-2);
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+ border-radius: 8px;
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+ background: var(--white);
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+ display: flex;
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+ flex-direction: column;
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+ overflow: hidden;
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+ transition: box-shadow 0.2s ease;
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+ }
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+
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+ .monomer-collection-card:hover {
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+ box-shadow: 0 2px 12px rgba(0, 0, 0, 0.12);
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+ }
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+
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+ .monomer-collection-card-header {
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+ padding: 12px 14px 8px 14px;
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+ border-bottom: 1px solid var(--grey-2);
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+ flex-shrink: 0;
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+ }
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+
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+ .monomer-collection-card-title {
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+ font-size: 14px;
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+ font-weight: 600;
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+ color: var(--grey-6);
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+ margin: 0;
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+ overflow: hidden;
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+ text-overflow: ellipsis;
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+ white-space: nowrap;
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+ }
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+
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+ .monomer-collection-card-description {
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+ font-size: 11px;
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+ color: var(--grey-4);
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+ margin: 4px 0 0 0;
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+ overflow: hidden;
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+ text-overflow: ellipsis;
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+ display: -webkit-box;
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+ -webkit-line-clamp: 2;
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+ -webkit-box-orient: vertical;
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+ }
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+
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+ .monomer-collection-card-tags {
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+ display: flex;
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+ flex-wrap: wrap;
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+ gap: 3px;
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+ margin: 4px 0 0 0;
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+ }
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+
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+ .monomer-collection-card-tag {
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+ display: inline-block;
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+ padding: 1px 6px;
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+ border-radius: 3px;
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+ background: #e8f0fe;
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+ border: 1px solid var(--blue-2, #aecbfa);
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+ font-size: 10px;
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+ color: var(--blue-3, #4285f4);
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+ }
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+
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+ .monomer-collection-card-meta {
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+ font-size: 10px;
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+ color: var(--grey-3);
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+ margin: 4px 0 0 0;
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+ }
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+
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+ .monomer-collections-search {
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+ margin-bottom: 12px;
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+ }
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+
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+ .monomer-collections-search input {
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+ width: 100%;
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+ max-width: 400px;
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+ }
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+
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+ .monomer-collection-card-body {
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+ flex: 1;
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+ overflow-y: auto;
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+ padding: 10px 14px;
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+ min-height: 0;
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+ }
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+
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+ .monomer-collection-card-actions {
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+ padding: 8px 14px;
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+ border-top: 1px solid var(--grey-2);
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+ display: flex;
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+ gap: 8px;
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+ justify-content: flex-end;
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+ flex-shrink: 0;
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+ }
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+
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+ .monomer-collection-card-actions .ui-btn {
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+ font-size: 11px;
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+ padding: 2px 10px;
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+ }
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+
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+ .monomer-collection-tags {
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+ display: flex;
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+ flex-wrap: wrap;
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+ gap: 4px;
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+ }
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+
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+ .monomer-collection-tag {
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+ display: inline-block;
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+ padding: 2px 8px;
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+ border-radius: 4px;
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+ background: var(--grey-1);
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+ border: 1px solid var(--grey-2);
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+ font-size: 11px;
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+ color: var(--grey-5);
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+ cursor: default;
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+ transition: background 0.15s ease;
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+ }
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+
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+ .monomer-collection-tag:hover {
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+ background: var(--blue-1, #e8f0fe);
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+ border-color: var(--blue-2, #aecbfa);
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+ }
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+
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+ .monomer-collection-add-card {
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+ width: 20%;
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+ min-width: 240px;
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+ height: 300px;
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+ border: 2px dashed var(--grey-3);
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+ border-radius: 8px;
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+ display: flex;
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+ align-items: center;
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+ justify-content: center;
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+ cursor: pointer;
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+ transition: border-color 0.2s ease, background 0.2s ease;
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+ }
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+
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+ .monomer-collection-add-card:hover {
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+ border-color: var(--blue-2, #aecbfa);
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+ background: var(--blue-1, #e8f0fe);
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+ }
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+
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+ .monomer-collection-add-card-content {
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+ text-align: center;
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+ color: var(--grey-4);
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+ }
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+
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+ .monomer-collection-add-card-content .grok-icon {
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+ font-size: 32px;
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+ margin-bottom: 8px;
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+ }
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+
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+ .monomer-collection-add-card-content span {
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+ display: block;
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+ font-size: 13px;
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+ }
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+
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+ .monomer-collections-load-more {
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+ width: 100%;
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+ display: flex;
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+ justify-content: center;
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+ padding: 16px 0;
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+ }
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+
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+ .monomer-collections-load-more .ui-btn {
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+ min-width: 200px;
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+ }
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+
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+ .monomer-collection-empty-state {
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+ width: 100%;
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+ text-align: center;
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+ padding: 60px 20px;
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+ color: var(--grey-4);
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+ font-size: 14px;
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+ }