@datagrok/bio 2.22.7 → 2.22.9

package/src/package.ts

@@ -82,6 +82,36 @@ export * from './package.g';
 // /** Avoid reassigning {@link monomerLib} because consumers subscribe to {@link IMonomerLib.onChanged} event */
 // let monomerLib: MonomerLib | null = null;
 let initBioPromise: Promise<void> | null = null;
+/** Temporary polyfill */
+
+function getDecoratorFunc() {
+  return function(args: any) {
+    return function(
+      target: any,
+      propertyKey: string,
+      descriptor: PropertyDescriptor
+    ) { };
+  };
+}
+
+// Ensure decorators object exists and polyfill missing decorators
+if (!grok.decorators)
+  (grok as any).decorators = {};
+
+
+const decorators = [
+  'func', 'init', 'param', 'panel', 'editor', 'demo', 'app',
+  'appTreeBrowser', 'fileHandler', 'fileExporter', 'model', 'viewer', 'filter', 'cellRenderer', 'autostart',
+  'dashboard', 'folderViewer', 'semTypeDetector', 'packageSettingsEditor', 'functionAnalysis', 'converter',
+  'fileViewer', 'model', 'treeBrowser', 'polyfill'
+];
+
+decorators.forEach((decorator) => {
+  if (!(grok.decorators as any)[decorator])
+    (grok.decorators as any)[decorator] = getDecoratorFunc();
+});
+
+/** End temporary polyfill */
 
 export class PackageFunctions {
   @grok.decorators.func({description: 'Returns an instance of the monomer library helper', outputs: [{type: 'object', name: 'result'}]})
@@ -356,7 +386,7 @@ export class PackageFunctions {
   static async activityCliffs(
     @grok.decorators.param({options: {description: 'Input data table'}})table: DG.DataFrame,
     @grok.decorators.param({type: 'string', options: {semType: 'Macromolecule', description: 'Input data table'}}) molecules: DG.Column<string>,
-    activities: DG.Column,
+      activities: DG.Column,
     @grok.decorators.param({options: {initialValue: '80', description: 'Similarity cutoff'}}) similarity: number,
     @grok.decorators.param({type: 'string', options: {choices: ['UMAP', 't-SNE']}}) methodName: DimReductionMethods,
     @grok.decorators.param({type: 'string', options: {choices: ['Hamming', 'Levenshtein', 'Monomer chemical distance']}}) similarityMetric: MmDistanceFunctionsNames | BitArrayMetrics,
@@ -410,30 +440,30 @@ export class PackageFunctions {
       return;
     }
 
-  const pi = DG.TaskBarProgressIndicator.create(`Running sequence activity cliffs ...`);
-  const scRes = (await new Promise<DG.Viewer | undefined>((resolve, reject) => {
-    if (table.rowCount > fastRowCount && !options?.[BYPASS_LARGE_DATA_WARNING]) {
-      ui.dialog().add(ui.divText(`Activity cliffs analysis might take several minutes.
+    const pi = DG.TaskBarProgressIndicator.create(`Running sequence activity cliffs ...`);
+    const scRes = (await new Promise<DG.Viewer | undefined>((resolve, reject) => {
+      if (table.rowCount > fastRowCount && !options?.[BYPASS_LARGE_DATA_WARNING]) {
+        ui.dialog().add(ui.divText(`Activity cliffs analysis might take several minutes.
     Do you want to continue?`))
-        .onOK(async () => {
-          runCliffs().then((res) => resolve(res)).catch((err) => reject(err));
-        })
-        .onCancel(() => { resolve(undefined); })
-        .show();
-    } else
-      runCliffs().then((res) => resolve(res)).catch((err) => reject(err));
-  }).catch((err: any) => {
-    const [errMsg, errStack] = errInfo(err);
-    _package.logger.error(errMsg, undefined, errStack);
-    throw err;
-  }).finally(() => { pi.close(); })) as DG.ScatterPlotViewer | undefined;
-  if (scRes?.props?.xColumnName && scRes?.props?.yColumnName && table.col(scRes.props.xColumnName) && table.col(scRes.props.yColumnName)) {
+          .onOK(async () => {
+            runCliffs().then((res) => resolve(res)).catch((err) => reject(err));
+          })
+          .onCancel(() => { resolve(undefined); })
+          .show();
+      } else
+        runCliffs().then((res) => resolve(res)).catch((err) => reject(err));
+    }).catch((err: any) => {
+      const [errMsg, errStack] = errInfo(err);
+      _package.logger.error(errMsg, undefined, errStack);
+      throw err;
+    }).finally(() => { pi.close(); })) as DG.ScatterPlotViewer | undefined;
+    if (scRes?.props?.xColumnName && scRes?.props?.yColumnName && table.col(scRes.props.xColumnName) && table.col(scRes.props.yColumnName)) {
     table.col(scRes.props.xColumnName)!.set(0, table.col(scRes.props.xColumnName)!.get(0)); // to trigger rendering
     table.col(scRes.props.yColumnName)!.set(0, table.col(scRes.props.yColumnName)!.get(0)); // to trigger rendering
-  }
+    }
 
-  return scRes;
-}
+    return scRes;
+  }
 
   @grok.decorators.func({
     name: 'Encode Sequences',
@@ -969,8 +999,8 @@ export class PackageFunctions {
     return await showManageLibrariesView(false);
   }
 
-  @grok.decorators.func({name: 'Monomer Manager Tree Browser'})
-  static async manageMonomerLibrariesViewTreeBrowser(treeNode: DG.TreeViewGroup, browsePanel: DG.BrowsePanel) {
+  @grok.decorators.func({name: 'Monomer Manager Tree Browser', meta: {role: 'appTreeBrowser'}})
+  static async manageMonomerLibrariesViewTreeBrowser(treeNode: DG.TreeViewGroup) {
     const libraries = (await (await MonomerLibManager.getInstance()).getFileManager()).getValidLibraryPaths();
     libraries.forEach((libName) => {
       const nodeName = libName.endsWith('.json') ? libName.substring(0, libName.length - 5) : libName;