@datagrok/bio 2.22.0 → 2.22.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (10) hide show
  1. package/detectors.js +1 -1
  2. package/dist/package-test.js +1 -1
  3. package/dist/package-test.js.map +1 -1
  4. package/dist/package.js +1 -1
  5. package/dist/package.js.map +1 -1
  6. package/package.json +1 -1
  7. package/src/analysis/sequence-diversity-viewer.ts +1 -14
  8. package/src/utils/monomer-lib/library-file-manager/ui.ts +9 -1
  9. package/test-console-output-1.log +301 -300
  10. package/test-record-1.mp4 +0 -0
package/dist/package.js CHANGED
@@ -4,5 +4,5 @@ var bio;(()=>{var t={8924:(t,e,n)=>{"use strict";var i=n(7362);class o extends i
4
4
  || ${a} === "boolean" || ${o} === null`).assign(l,s._`[${o}]`)}}i.else(),m(t),i.endIf(),i.if(s._`${l} !== undefined`,(()=>{i.assign(o,l),function({gen:t,parentData:e,parentDataProperty:n},i){t.if(s._`${e} !== undefined`,(()=>t.assign(s._`${e}[${n}]`,i)))}(t,l)}))}(t,e,a):m(t)}))}return c};const h=new Set(["string","number","integer","boolean","null"]);function u(t,e,n,i=l.Correct){const o=i===l.Correct?s.operators.EQ:s.operators.NEQ;let r;switch(t){case"null":return s._`${e} ${o} null`;case"array":r=s._`Array.isArray(${e})`;break;case"object":r=s._`${e} && typeof ${e} == "object" && !Array.isArray(${e})`;break;case"integer":r=a(s._`!(${e} % 1) && !isNaN(${e})`);break;case"number":r=a();break;default:return s._`typeof ${e} ${o} ${t}`}return i===l.Correct?r:(0,s.not)(r);function a(t=s.nil){return(0,s.and)(s._`typeof ${e} == "number"`,t,n?s._`isFinite(${e})`:s.nil)}}function d(t,e,n,i){if(1===t.length)return u(t[0],e,n,i);let o;const r=(0,a.toHash)(t);if(r.array&&r.object){const t=s._`typeof ${e} != "object"`;o=r.null?t:s._`!${e} || ${t}`,delete r.null,delete r.array,delete r.object}else o=s.nil;r.number&&delete r.integer;for(const t in r)o=(0,s.and)(o,u(t,e,n,i));return o}e.checkDataType=u,e.checkDataTypes=d;const p={message:({schema:t})=>`must be ${t}`,params:({schema:t,schemaValue:e})=>"string"==typeof t?s._`{type: ${t}}`:s._`{type: ${e}}`};function m(t){const e=function(t){const{gen:e,data:n,schema:i}=t,o=(0,a.schemaRefOrVal)(t,i,"type");return{gen:e,keyword:"type",data:n,schema:i.type,schemaCode:o,schemaValue:o,parentSchema:i,params:{},it:t}}(t);(0,r.reportError)(e,p)}e.reportTypeError=m},7870:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.assignDefaults=void 0;const i=n(9029),o=n(4227);function r(t,e,n){const{gen:r,compositeRule:s,data:a,opts:l}=t;if(void 0===n)return;const c=i._`${a}${(0,i.getProperty)(e)}`;if(s)return void(0,o.checkStrictMode)(t,`default is ignored for: ${c}`);let h=i._`${c} === undefined`;"empty"===l.useDefaults&&(h=i._`${h} || ${c} === null || ${c} === ""`),r.if(h,i._`${c} = ${(0,i.stringify)(n)}`)}e.assignDefaults=function(t,e){const{properties:n,items:i}=t.schema;if("object"===e&&n)for(const e in n)r(t,e,n[e].default);else"array"===e&&Array.isArray(i)&&i.forEach(((e,n)=>r(t,n,e.default)))}},2586:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.getData=e.KeywordCxt=e.validateFunctionCode=void 0;const i=n(8727),o=n(208),r=n(7887),s=n(208),a=n(7870),l=n(3673),c=n(4495),h=n(9029),u=n(2023),d=n(6939),p=n(4227),m=n(8708);function f({gen:t,validateName:e,schema:n,schemaEnv:i,opts:o},r){o.code.es5?t.func(e,h._`${u.default.data}, ${u.default.valCxt}`,i.$async,(()=>{t.code(h._`"use strict"; ${g(n,o)}`),function(t,e){t.if(u.default.valCxt,(()=>{t.var(u.default.instancePath,h._`${u.default.valCxt}.${u.default.instancePath}`),t.var(u.default.parentData,h._`${u.default.valCxt}.${u.default.parentData}`),t.var(u.default.parentDataProperty,h._`${u.default.valCxt}.${u.default.parentDataProperty}`),t.var(u.default.rootData,h._`${u.default.valCxt}.${u.default.rootData}`),e.dynamicRef&&t.var(u.default.dynamicAnchors,h._`${u.default.valCxt}.${u.default.dynamicAnchors}`)}),(()=>{t.var(u.default.instancePath,h._`""`),t.var(u.default.parentData,h._`undefined`),t.var(u.default.parentDataProperty,h._`undefined`),t.var(u.default.rootData,u.default.data),e.dynamicRef&&t.var(u.default.dynamicAnchors,h._`{}`)}))}(t,o),t.code(r)})):t.func(e,h._`${u.default.data}, ${function(t){return h._`{${u.default.instancePath}="", ${u.default.parentData}, ${u.default.parentDataProperty}, ${u.default.rootData}=${u.default.data}${t.dynamicRef?h._`, ${u.default.dynamicAnchors}={}`:h.nil}}={}`}(o)}`,i.$async,(()=>t.code(g(n,o)).code(r)))}function g(t,e){const n="object"==typeof t&&t[e.schemaId];return n&&(e.code.source||e.code.process)?h._`/*# sourceURL=${n} */`:h.nil}function y({schema:t,self:e}){if("boolean"==typeof t)return!t;for(const n in t)if(e.RULES.all[n])return!0;return!1}function b(t){return"boolean"!=typeof t.schema}function v(t){(0,p.checkUnknownRules)(t),function(t){const{schema:e,errSchemaPath:n,opts:i,self:o}=t;e.$ref&&i.ignoreKeywordsWithRef&&(0,p.schemaHasRulesButRef)(e,o.RULES)&&o.logger.warn(`$ref: keywords ignored in schema at path "${n}"`)}(t)}function w(t,e){if(t.opts.jtd)return A(t,[],!1,e);const n=(0,o.getSchemaTypes)(t.schema);A(t,n,!(0,o.coerceAndCheckDataType)(t,n),e)}function C({gen:t,schemaEnv:e,schema:n,errSchemaPath:i,opts:o}){const r=n.$comment;if(!0===o.$comment)t.code(h._`${u.default.self}.logger.log(${r})`);else if("function"==typeof o.$comment){const n=h.str`${i}/$comment`,o=t.scopeValue("root",{ref:e.root});t.code(h._`${u.default.self}.opts.$comment(${r}, ${n}, ${o}.schema)`)}}function A(t,e,n,i){const{gen:o,schema:a,data:l,allErrors:c,opts:d,self:m}=t,{RULES:f}=m;function g(p){(0,r.shouldUseGroup)(a,p)&&(p.type?(o.if((0,s.checkDataType)(p.type,l,d.strictNumbers)),S(t,p),1===e.length&&e[0]===p.type&&n&&(o.else(),(0,s.reportTypeError)(t)),o.endIf()):S(t,p),c||o.if(h._`${u.default.errors} === ${i||0}`))}!a.$ref||!d.ignoreKeywordsWithRef&&(0,p.schemaHasRulesButRef)(a,f)?(d.jtd||function(t,e){!t.schemaEnv.meta&&t.opts.strictTypes&&(function(t,e){e.length&&(t.dataTypes.length?(e.forEach((e=>{x(t.dataTypes,e)||E(t,`type "${e}" not allowed by context "${t.dataTypes.join(",")}"`)})),function(t,e){const n=[];for(const i of t.dataTypes)x(e,i)?n.push(i):e.includes("integer")&&"number"===i&&n.push("integer");t.dataTypes=n}(t,e)):t.dataTypes=e)}(t,e),t.opts.allowUnionTypes||function(t,e){e.length>1&&(2!==e.length||!e.includes("null"))&&E(t,"use allowUnionTypes to allow union type keyword")}(t,e),function(t,e){const n=t.self.RULES.all;for(const i in n){const o=n[i];if("object"==typeof o&&(0,r.shouldUseRule)(t.schema,o)){const{type:n}=o.definition;n.length&&!n.some((t=>{return i=t,(n=e).includes(i)||"number"===i&&n.includes("integer");var n,i}))&&E(t,`missing type "${n.join(",")}" for keyword "${i}"`)}}}(t,t.dataTypes))}(t,e),o.block((()=>{for(const t of f.rules)g(t);g(f.post)}))):o.block((()=>_(t,"$ref",f.all.$ref.definition)))}function S(t,e){const{gen:n,schema:i,opts:{useDefaults:o}}=t;o&&(0,a.assignDefaults)(t,e.type),n.block((()=>{for(const n of e.rules)(0,r.shouldUseRule)(i,n)&&_(t,n.keyword,n.definition,e.type)}))}function x(t,e){return t.includes(e)||"integer"===e&&t.includes("number")}function E(t,e){e+=` at "${t.schemaEnv.baseId+t.errSchemaPath}" (strictTypes)`,(0,p.checkStrictMode)(t,e,t.opts.strictTypes)}e.validateFunctionCode=function(t){b(t)&&(v(t),y(t))?function(t){const{schema:e,opts:n,gen:i}=t;f(t,(()=>{n.$comment&&e.$comment&&C(t),function(t){const{schema:e,opts:n}=t;void 0!==e.default&&n.useDefaults&&n.strictSchema&&(0,p.checkStrictMode)(t,"default is ignored in the schema root")}(t),i.let(u.default.vErrors,null),i.let(u.default.errors,0),n.unevaluated&&function(t){const{gen:e,validateName:n}=t;t.evaluated=e.const("evaluated",h._`${n}.evaluated`),e.if(h._`${t.evaluated}.dynamicProps`,(()=>e.assign(h._`${t.evaluated}.props`,h._`undefined`))),e.if(h._`${t.evaluated}.dynamicItems`,(()=>e.assign(h._`${t.evaluated}.items`,h._`undefined`)))}(t),w(t),function(t){const{gen:e,schemaEnv:n,validateName:i,ValidationError:o,opts:r}=t;n.$async?e.if(h._`${u.default.errors} === 0`,(()=>e.return(u.default.data)),(()=>e.throw(h._`new ${o}(${u.default.vErrors})`))):(e.assign(h._`${i}.errors`,u.default.vErrors),r.unevaluated&&function({gen:t,evaluated:e,props:n,items:i}){n instanceof h.Name&&t.assign(h._`${e}.props`,n),i instanceof h.Name&&t.assign(h._`${e}.items`,i)}(t),e.return(h._`${u.default.errors} === 0`))}(t)}))}(t):f(t,(()=>(0,i.topBoolOrEmptySchema)(t)))};class T{constructor(t,e,n){if((0,l.validateKeywordUsage)(t,e,n),this.gen=t.gen,this.allErrors=t.allErrors,this.keyword=n,this.data=t.data,this.schema=t.schema[n],this.$data=e.$data&&t.opts.$data&&this.schema&&this.schema.$data,this.schemaValue=(0,p.schemaRefOrVal)(t,this.schema,n,this.$data),this.schemaType=e.schemaType,this.parentSchema=t.schema,this.params={},this.it=t,this.def=e,this.$data)this.schemaCode=t.gen.const("vSchema",L(this.$data,t));else if(this.schemaCode=this.schemaValue,!(0,l.validSchemaType)(this.schema,e.schemaType,e.allowUndefined))throw new Error(`${n} value must be ${JSON.stringify(e.schemaType)}`);("code"in e?e.trackErrors:!1!==e.errors)&&(this.errsCount=t.gen.const("_errs",u.default.errors))}result(t,e,n){this.failResult((0,h.not)(t),e,n)}failResult(t,e,n){this.gen.if(t),n?n():this.error(),e?(this.gen.else(),e(),this.allErrors&&this.gen.endIf()):this.allErrors?this.gen.endIf():this.gen.else()}pass(t,e){this.failResult((0,h.not)(t),void 0,e)}fail(t){if(void 0===t)return this.error(),void(this.allErrors||this.gen.if(!1));this.gen.if(t),this.error(),this.allErrors?this.gen.endIf():this.gen.else()}fail$data(t){if(!this.$data)return this.fail(t);const{schemaCode:e}=this;this.fail(h._`${e} !== undefined && (${(0,h.or)(this.invalid$data(),t)})`)}error(t,e,n){if(e)return this.setParams(e),this._error(t,n),void this.setParams({});this._error(t,n)}_error(t,e){(t?m.reportExtraError:m.reportError)(this,this.def.error,e)}$dataError(){(0,m.reportError)(this,this.def.$dataError||m.keyword$DataError)}reset(){if(void 0===this.errsCount)throw new Error('add "trackErrors" to keyword definition');(0,m.resetErrorsCount)(this.gen,this.errsCount)}ok(t){this.allErrors||this.gen.if(t)}setParams(t,e){e?Object.assign(this.params,t):this.params=t}block$data(t,e,n=h.nil){this.gen.block((()=>{this.check$data(t,n),e()}))}check$data(t=h.nil,e=h.nil){if(!this.$data)return;const{gen:n,schemaCode:i,schemaType:o,def:r}=this;n.if((0,h.or)(h._`${i} === undefined`,e)),t!==h.nil&&n.assign(t,!0),(o.length||r.validateSchema)&&(n.elseIf(this.invalid$data()),this.$dataError(),t!==h.nil&&n.assign(t,!1)),n.else()}invalid$data(){const{gen:t,schemaCode:e,schemaType:n,def:i,it:o}=this;return(0,h.or)(function(){if(n.length){if(!(e instanceof h.Name))throw new Error("ajv implementation error");const t=Array.isArray(n)?n:[n];return h._`${(0,s.checkDataTypes)(t,e,o.opts.strictNumbers,s.DataType.Wrong)}`}return h.nil}(),function(){if(i.validateSchema){const n=t.scopeValue("validate$data",{ref:i.validateSchema});return h._`!${n}(${e})`}return h.nil}())}subschema(t,e){const n=(0,c.getSubschema)(this.it,t);(0,c.extendSubschemaData)(n,this.it,t),(0,c.extendSubschemaMode)(n,t);const o={...this.it,...n,items:void 0,props:void 0};return function(t,e){b(t)&&(v(t),y(t))?function(t,e){const{schema:n,gen:i,opts:o}=t;o.$comment&&n.$comment&&C(t),function(t){const e=t.schema[t.opts.schemaId];e&&(t.baseId=(0,d.resolveUrl)(t.opts.uriResolver,t.baseId,e))}(t),function(t){if(t.schema.$async&&!t.schemaEnv.$async)throw new Error("async schema in sync schema")}(t);const r=i.const("_errs",u.default.errors);w(t,r),i.var(e,h._`${r} === ${u.default.errors}`)}(t,e):(0,i.boolOrEmptySchema)(t,e)}(o,e),o}mergeEvaluated(t,e){const{it:n,gen:i}=this;n.opts.unevaluated&&(!0!==n.props&&void 0!==t.props&&(n.props=p.mergeEvaluated.props(i,t.props,n.props,e)),!0!==n.items&&void 0!==t.items&&(n.items=p.mergeEvaluated.items(i,t.items,n.items,e)))}mergeValidEvaluated(t,e){const{it:n,gen:i}=this;if(n.opts.unevaluated&&(!0!==n.props||!0!==n.items))return i.if(e,(()=>this.mergeEvaluated(t,h.Name))),!0}}function _(t,e,n,i){const o=new T(t,n,e);"code"in n?n.code(o,i):o.$data&&n.validate?(0,l.funcKeywordCode)(o,n):"macro"in n?(0,l.macroKeywordCode)(o,n):(n.compile||n.validate)&&(0,l.funcKeywordCode)(o,n)}e.KeywordCxt=T;const M=/^\/(?:[^~]|~0|~1)*$/,I=/^([0-9]+)(#|\/(?:[^~]|~0|~1)*)?$/;function L(t,{dataLevel:e,dataNames:n,dataPathArr:i}){let o,r;if(""===t)return u.default.rootData;if("/"===t[0]){if(!M.test(t))throw new Error(`Invalid JSON-pointer: ${t}`);o=t,r=u.default.rootData}else{const s=I.exec(t);if(!s)throw new Error(`Invalid JSON-pointer: ${t}`);const a=+s[1];if(o=s[2],"#"===o){if(a>=e)throw new Error(l("property/index",a));return i[e-a]}if(a>e)throw new Error(l("data",a));if(r=n[e-a],!o)return r}let s=r;const a=o.split("/");for(const t of a)t&&(r=h._`${r}${(0,h.getProperty)((0,p.unescapeJsonPointer)(t))}`,s=h._`${s} && ${r}`);return s;function l(t,n){return`Cannot access ${t} ${n} levels up, current level is ${e}`}}e.getData=L},3673:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.validateKeywordUsage=e.validSchemaType=e.funcKeywordCode=e.macroKeywordCode=void 0;const i=n(9029),o=n(2023),r=n(5765),s=n(8708);function a(t){const{gen:e,data:n,it:o}=t;e.if(o.parentData,(()=>e.assign(n,i._`${o.parentData}[${o.parentDataProperty}]`)))}function l(t,e,n){if(void 0===n)throw new Error(`keyword "${e}" failed to compile`);return t.scopeValue("keyword","function"==typeof n?{ref:n}:{ref:n,code:(0,i.stringify)(n)})}e.macroKeywordCode=function(t,e){const{gen:n,keyword:o,schema:r,parentSchema:s,it:a}=t,c=e.macro.call(a.self,r,s,a),h=l(n,o,c);!1!==a.opts.validateSchema&&a.self.validateSchema(c,!0);const u=n.name("valid");t.subschema({schema:c,schemaPath:i.nil,errSchemaPath:`${a.errSchemaPath}/${o}`,topSchemaRef:h,compositeRule:!0},u),t.pass(u,(()=>t.error(!0)))},e.funcKeywordCode=function(t,e){var n;const{gen:c,keyword:h,schema:u,parentSchema:d,$data:p,it:m}=t;!function({schemaEnv:t},e){if(e.async&&!t.$async)throw new Error("async keyword in sync schema")}(m,e);const f=!p&&e.compile?e.compile.call(m.self,u,d,m):e.validate,g=l(c,h,f),y=c.let("valid");function b(n=(e.async?i._`await `:i.nil)){const s=m.opts.passContext?o.default.this:o.default.self,a=!("compile"in e&&!p||!1===e.schema);c.assign(y,i._`${n}${(0,r.callValidateCode)(t,g,s,a)}`,e.modifying)}function v(t){var n;c.if((0,i.not)(null!==(n=e.valid)&&void 0!==n?n:y),t)}t.block$data(y,(function(){if(!1===e.errors)b(),e.modifying&&a(t),v((()=>t.error()));else{const n=e.async?function(){const t=c.let("ruleErrs",null);return c.try((()=>b(i._`await `)),(e=>c.assign(y,!1).if(i._`${e} instanceof ${m.ValidationError}`,(()=>c.assign(t,i._`${e}.errors`)),(()=>c.throw(e))))),t}():function(){const t=i._`${g}.errors`;return c.assign(t,null),b(i.nil),t}();e.modifying&&a(t),v((()=>function(t,e){const{gen:n}=t;n.if(i._`Array.isArray(${e})`,(()=>{n.assign(o.default.vErrors,i._`${o.default.vErrors} === null ? ${e} : ${o.default.vErrors}.concat(${e})`).assign(o.default.errors,i._`${o.default.vErrors}.length`),(0,s.extendErrors)(t)}),(()=>t.error()))}(t,n)))}})),t.ok(null!==(n=e.valid)&&void 0!==n?n:y)},e.validSchemaType=function(t,e,n=!1){return!e.length||e.some((e=>"array"===e?Array.isArray(t):"object"===e?t&&"object"==typeof t&&!Array.isArray(t):typeof t==e||n&&void 0===t))},e.validateKeywordUsage=function({schema:t,opts:e,self:n,errSchemaPath:i},o,r){if(Array.isArray(o.keyword)?!o.keyword.includes(r):o.keyword!==r)throw new Error("ajv implementation error");const s=o.dependencies;if(null==s?void 0:s.some((e=>!Object.prototype.hasOwnProperty.call(t,e))))throw new Error(`parent schema must have dependencies of ${r}: ${s.join(",")}`);if(o.validateSchema&&!o.validateSchema(t[r])){const t=`keyword "${r}" value is invalid at path "${i}": `+n.errorsText(o.validateSchema.errors);if("log"!==e.validateSchema)throw new Error(t);n.logger.error(t)}}},4495:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.extendSubschemaMode=e.extendSubschemaData=e.getSubschema=void 0;const i=n(9029),o=n(4227);e.getSubschema=function(t,{keyword:e,schemaProp:n,schema:r,schemaPath:s,errSchemaPath:a,topSchemaRef:l}){if(void 0!==e&&void 0!==r)throw new Error('both "keyword" and "schema" passed, only one allowed');if(void 0!==e){const r=t.schema[e];return void 0===n?{schema:r,schemaPath:i._`${t.schemaPath}${(0,i.getProperty)(e)}`,errSchemaPath:`${t.errSchemaPath}/${e}`}:{schema:r[n],schemaPath:i._`${t.schemaPath}${(0,i.getProperty)(e)}${(0,i.getProperty)(n)}`,errSchemaPath:`${t.errSchemaPath}/${e}/${(0,o.escapeFragment)(n)}`}}if(void 0!==r){if(void 0===s||void 0===a||void 0===l)throw new Error('"schemaPath", "errSchemaPath" and "topSchemaRef" are required with "schema"');return{schema:r,schemaPath:s,topSchemaRef:l,errSchemaPath:a}}throw new Error('either "keyword" or "schema" must be passed')},e.extendSubschemaData=function(t,e,{dataProp:n,dataPropType:r,data:s,dataTypes:a,propertyName:l}){if(void 0!==s&&void 0!==n)throw new Error('both "data" and "dataProp" passed, only one allowed');const{gen:c}=e;if(void 0!==n){const{errorPath:s,dataPathArr:a,opts:l}=e;h(c.let("data",i._`${e.data}${(0,i.getProperty)(n)}`,!0)),t.errorPath=i.str`${s}${(0,o.getErrorPath)(n,r,l.jsPropertySyntax)}`,t.parentDataProperty=i._`${n}`,t.dataPathArr=[...a,t.parentDataProperty]}function h(n){t.data=n,t.dataLevel=e.dataLevel+1,t.dataTypes=[],e.definedProperties=new Set,t.parentData=e.data,t.dataNames=[...e.dataNames,n]}void 0!==s&&(h(s instanceof i.Name?s:c.let("data",s,!0)),void 0!==l&&(t.propertyName=l)),a&&(t.dataTypes=a)},e.extendSubschemaMode=function(t,{jtdDiscriminator:e,jtdMetadata:n,compositeRule:i,createErrors:o,allErrors:r}){void 0!==i&&(t.compositeRule=i),void 0!==o&&(t.createErrors=o),void 0!==r&&(t.allErrors=r),t.jtdDiscriminator=e,t.jtdMetadata=n}},4042:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.CodeGen=e.Name=e.nil=e.stringify=e.str=e._=e.KeywordCxt=void 0;var i=n(2586);Object.defineProperty(e,"KeywordCxt",{enumerable:!0,get:function(){return i.KeywordCxt}});var o=n(9029);Object.defineProperty(e,"_",{enumerable:!0,get:function(){return o._}}),Object.defineProperty(e,"str",{enumerable:!0,get:function(){return o.str}}),Object.defineProperty(e,"stringify",{enumerable:!0,get:function(){return o.stringify}}),Object.defineProperty(e,"nil",{enumerable:!0,get:function(){return o.nil}}),Object.defineProperty(e,"Name",{enumerable:!0,get:function(){return o.Name}}),Object.defineProperty(e,"CodeGen",{enumerable:!0,get:function(){return o.CodeGen}});const r=n(3558),s=n(4551),a=n(396),l=n(3835),c=n(9029),h=n(6939),u=n(208),d=n(4227),p=n(3837),m=n(5944),f=(t,e)=>new RegExp(t,e);f.code="new RegExp";const g=["removeAdditional","useDefaults","coerceTypes"],y=new Set(["validate","serialize","parse","wrapper","root","schema","keyword","pattern","formats","validate$data","func","obj","Error"]),b={errorDataPath:"",format:"`validateFormats: false` can be used instead.",nullable:'"nullable" keyword is supported by default.',jsonPointers:"Deprecated jsPropertySyntax can be used instead.",extendRefs:"Deprecated ignoreKeywordsWithRef can be used instead.",missingRefs:"Pass empty schema with $id that should be ignored to ajv.addSchema.",processCode:"Use option `code: {process: (code, schemaEnv: object) => string}`",sourceCode:"Use option `code: {source: true}`",strictDefaults:"It is default now, see option `strict`.",strictKeywords:"It is default now, see option `strict`.",uniqueItems:'"uniqueItems" keyword is always validated.',unknownFormats:"Disable strict mode or pass `true` to `ajv.addFormat` (or `formats` option).",cache:"Map is used as cache, schema object as key.",serialize:"Map is used as cache, schema object as key.",ajvErrors:"It is default now."},v={ignoreKeywordsWithRef:"",jsPropertySyntax:"",unicode:'"minLength"/"maxLength" account for unicode characters by default.'};function w(t){var e,n,i,o,r,s,a,l,c,h,u,d,p,g,y,b,v,w,C,A,S,x,E,T,_;const M=t.strict,I=null===(e=t.code)||void 0===e?void 0:e.optimize,L=!0===I||void 0===I?1:I||0,N=null!==(i=null===(n=t.code)||void 0===n?void 0:n.regExp)&&void 0!==i?i:f,P=null!==(o=t.uriResolver)&&void 0!==o?o:m.default;return{strictSchema:null===(s=null!==(r=t.strictSchema)&&void 0!==r?r:M)||void 0===s||s,strictNumbers:null===(l=null!==(a=t.strictNumbers)&&void 0!==a?a:M)||void 0===l||l,strictTypes:null!==(h=null!==(c=t.strictTypes)&&void 0!==c?c:M)&&void 0!==h?h:"log",strictTuples:null!==(d=null!==(u=t.strictTuples)&&void 0!==u?u:M)&&void 0!==d?d:"log",strictRequired:null!==(g=null!==(p=t.strictRequired)&&void 0!==p?p:M)&&void 0!==g&&g,code:t.code?{...t.code,optimize:L,regExp:N}:{optimize:L,regExp:N},loopRequired:null!==(y=t.loopRequired)&&void 0!==y?y:200,loopEnum:null!==(b=t.loopEnum)&&void 0!==b?b:200,meta:null===(v=t.meta)||void 0===v||v,messages:null===(w=t.messages)||void 0===w||w,inlineRefs:null===(C=t.inlineRefs)||void 0===C||C,schemaId:null!==(A=t.schemaId)&&void 0!==A?A:"$id",addUsedSchema:null===(S=t.addUsedSchema)||void 0===S||S,validateSchema:null===(x=t.validateSchema)||void 0===x||x,validateFormats:null===(E=t.validateFormats)||void 0===E||E,unicodeRegExp:null===(T=t.unicodeRegExp)||void 0===T||T,int32range:null===(_=t.int32range)||void 0===_||_,uriResolver:P}}class C{constructor(t={}){this.schemas={},this.refs={},this.formats={},this._compilations=new Set,this._loading={},this._cache=new Map,t=this.opts={...t,...w(t)};const{es5:e,lines:n}=this.opts.code;this.scope=new c.ValueScope({scope:{},prefixes:y,es5:e,lines:n}),this.logger=function(t){if(!1===t)return M;if(void 0===t)return console;if(t.log&&t.warn&&t.error)return t;throw new Error("logger must implement log, warn and error methods")}(t.logger);const i=t.validateFormats;t.validateFormats=!1,this.RULES=(0,a.getRules)(),A.call(this,b,t,"NOT SUPPORTED"),A.call(this,v,t,"DEPRECATED","warn"),this._metaOpts=_.call(this),t.formats&&E.call(this),this._addVocabularies(),this._addDefaultMetaSchema(),t.keywords&&T.call(this,t.keywords),"object"==typeof t.meta&&this.addMetaSchema(t.meta),x.call(this),t.validateFormats=i}_addVocabularies(){this.addKeyword("$async")}_addDefaultMetaSchema(){const{$data:t,meta:e,schemaId:n}=this.opts;let i=p;"id"===n&&(i={...p},i.id=i.$id,delete i.$id),e&&t&&this.addMetaSchema(i,i[n],!1)}defaultMeta(){const{meta:t,schemaId:e}=this.opts;return this.opts.defaultMeta="object"==typeof t?t[e]||t:void 0}validate(t,e){let n;if("string"==typeof t){if(n=this.getSchema(t),!n)throw new Error(`no schema with key or ref "${t}"`)}else n=this.compile(t);const i=n(e);return"$async"in n||(this.errors=n.errors),i}compile(t,e){const n=this._addSchema(t,e);return n.validate||this._compileSchemaEnv(n)}compileAsync(t,e){if("function"!=typeof this.opts.loadSchema)throw new Error("options.loadSchema should be a function");const{loadSchema:n}=this.opts;return i.call(this,t,e);async function i(t,e){await o.call(this,t.$schema);const n=this._addSchema(t,e);return n.validate||r.call(this,n)}async function o(t){t&&!this.getSchema(t)&&await i.call(this,{$ref:t},!0)}async function r(t){try{return this._compileSchemaEnv(t)}catch(e){if(!(e instanceof s.default))throw e;return a.call(this,e),await l.call(this,e.missingSchema),r.call(this,t)}}function a({missingSchema:t,missingRef:e}){if(this.refs[t])throw new Error(`AnySchema ${t} is loaded but ${e} cannot be resolved`)}async function l(t){const n=await c.call(this,t);this.refs[t]||await o.call(this,n.$schema),this.refs[t]||this.addSchema(n,t,e)}async function c(t){const e=this._loading[t];if(e)return e;try{return await(this._loading[t]=n(t))}finally{delete this._loading[t]}}}addSchema(t,e,n,i=this.opts.validateSchema){if(Array.isArray(t)){for(const e of t)this.addSchema(e,void 0,n,i);return this}let o;if("object"==typeof t){const{schemaId:e}=this.opts;if(o=t[e],void 0!==o&&"string"!=typeof o)throw new Error(`schema ${e} must be string`)}return e=(0,h.normalizeId)(e||o),this._checkUnique(e),this.schemas[e]=this._addSchema(t,n,e,i,!0),this}addMetaSchema(t,e,n=this.opts.validateSchema){return this.addSchema(t,e,!0,n),this}validateSchema(t,e){if("boolean"==typeof t)return!0;let n;if(n=t.$schema,void 0!==n&&"string"!=typeof n)throw new Error("$schema must be a string");if(n=n||this.opts.defaultMeta||this.defaultMeta(),!n)return this.logger.warn("meta-schema not available"),this.errors=null,!0;const i=this.validate(n,t);if(!i&&e){const t="schema is invalid: "+this.errorsText();if("log"!==this.opts.validateSchema)throw new Error(t);this.logger.error(t)}return i}getSchema(t){let e;for(;"string"==typeof(e=S.call(this,t));)t=e;if(void 0===e){const{schemaId:n}=this.opts,i=new l.SchemaEnv({schema:{},schemaId:n});if(e=l.resolveSchema.call(this,i,t),!e)return;this.refs[t]=e}return e.validate||this._compileSchemaEnv(e)}removeSchema(t){if(t instanceof RegExp)return this._removeAllSchemas(this.schemas,t),this._removeAllSchemas(this.refs,t),this;switch(typeof t){case"undefined":return this._removeAllSchemas(this.schemas),this._removeAllSchemas(this.refs),this._cache.clear(),this;case"string":{const e=S.call(this,t);return"object"==typeof e&&this._cache.delete(e.schema),delete this.schemas[t],delete this.refs[t],this}case"object":{const e=t;this._cache.delete(e);let n=t[this.opts.schemaId];return n&&(n=(0,h.normalizeId)(n),delete this.schemas[n],delete this.refs[n]),this}default:throw new Error("ajv.removeSchema: invalid parameter")}}addVocabulary(t){for(const e of t)this.addKeyword(e);return this}addKeyword(t,e){let n;if("string"==typeof t)n=t,"object"==typeof e&&(this.logger.warn("these parameters are deprecated, see docs for addKeyword"),e.keyword=n);else{if("object"!=typeof t||void 0!==e)throw new Error("invalid addKeywords parameters");if(n=(e=t).keyword,Array.isArray(n)&&!n.length)throw new Error("addKeywords: keyword must be string or non-empty array")}if(L.call(this,n,e),!e)return(0,d.eachItem)(n,(t=>N.call(this,t))),this;$.call(this,e);const i={...e,type:(0,u.getJSONTypes)(e.type),schemaType:(0,u.getJSONTypes)(e.schemaType)};return(0,d.eachItem)(n,0===i.type.length?t=>N.call(this,t,i):t=>i.type.forEach((e=>N.call(this,t,i,e)))),this}getKeyword(t){const e=this.RULES.all[t];return"object"==typeof e?e.definition:!!e}removeKeyword(t){const{RULES:e}=this;delete e.keywords[t],delete e.all[t];for(const n of e.rules){const e=n.rules.findIndex((e=>e.keyword===t));e>=0&&n.rules.splice(e,1)}return this}addFormat(t,e){return"string"==typeof e&&(e=new RegExp(e)),this.formats[t]=e,this}errorsText(t=this.errors,{separator:e=", ",dataVar:n="data"}={}){return t&&0!==t.length?t.map((t=>`${n}${t.instancePath} ${t.message}`)).reduce(((t,n)=>t+e+n)):"No errors"}$dataMetaSchema(t,e){const n=this.RULES.all;t=JSON.parse(JSON.stringify(t));for(const i of e){const e=i.split("/").slice(1);let o=t;for(const t of e)o=o[t];for(const t in n){const e=n[t];if("object"!=typeof e)continue;const{$data:i}=e.definition,r=o[t];i&&r&&(o[t]=k(r))}}return t}_removeAllSchemas(t,e){for(const n in t){const i=t[n];e&&!e.test(n)||("string"==typeof i?delete t[n]:i&&!i.meta&&(this._cache.delete(i.schema),delete t[n]))}}_addSchema(t,e,n,i=this.opts.validateSchema,o=this.opts.addUsedSchema){let r;const{schemaId:s}=this.opts;if("object"==typeof t)r=t[s];else{if(this.opts.jtd)throw new Error("schema must be object");if("boolean"!=typeof t)throw new Error("schema must be object or boolean")}let a=this._cache.get(t);if(void 0!==a)return a;n=(0,h.normalizeId)(r||n);const c=h.getSchemaRefs.call(this,t,n);return a=new l.SchemaEnv({schema:t,schemaId:s,meta:e,baseId:n,localRefs:c}),this._cache.set(a.schema,a),o&&!n.startsWith("#")&&(n&&this._checkUnique(n),this.refs[n]=a),i&&this.validateSchema(t,!0),a}_checkUnique(t){if(this.schemas[t]||this.refs[t])throw new Error(`schema with key or id "${t}" already exists`)}_compileSchemaEnv(t){if(t.meta?this._compileMetaSchema(t):l.compileSchema.call(this,t),!t.validate)throw new Error("ajv implementation error");return t.validate}_compileMetaSchema(t){const e=this.opts;this.opts=this._metaOpts;try{l.compileSchema.call(this,t)}finally{this.opts=e}}}function A(t,e,n,i="error"){for(const o in t){const r=o;r in e&&this.logger[i](`${n}: option ${o}. ${t[r]}`)}}function S(t){return t=(0,h.normalizeId)(t),this.schemas[t]||this.refs[t]}function x(){const t=this.opts.schemas;if(t)if(Array.isArray(t))this.addSchema(t);else for(const e in t)this.addSchema(t[e],e)}function E(){for(const t in this.opts.formats){const e=this.opts.formats[t];e&&this.addFormat(t,e)}}function T(t){if(Array.isArray(t))this.addVocabulary(t);else{this.logger.warn("keywords option as map is deprecated, pass array");for(const e in t){const n=t[e];n.keyword||(n.keyword=e),this.addKeyword(n)}}}function _(){const t={...this.opts};for(const e of g)delete t[e];return t}C.ValidationError=r.default,C.MissingRefError=s.default,e.default=C;const M={log(){},warn(){},error(){}},I=/^[a-z_$][a-z0-9_$:-]*$/i;function L(t,e){const{RULES:n}=this;if((0,d.eachItem)(t,(t=>{if(n.keywords[t])throw new Error(`Keyword ${t} is already defined`);if(!I.test(t))throw new Error(`Keyword ${t} has invalid name`)})),e&&e.$data&&!("code"in e)&&!("validate"in e))throw new Error('$data keyword must have "code" or "validate" function')}function N(t,e,n){var i;const o=null==e?void 0:e.post;if(n&&o)throw new Error('keyword with "post" flag cannot have "type"');const{RULES:r}=this;let s=o?r.post:r.rules.find((({type:t})=>t===n));if(s||(s={type:n,rules:[]},r.rules.push(s)),r.keywords[t]=!0,!e)return;const a={keyword:t,definition:{...e,type:(0,u.getJSONTypes)(e.type),schemaType:(0,u.getJSONTypes)(e.schemaType)}};e.before?P.call(this,s,a,e.before):s.rules.push(a),r.all[t]=a,null===(i=e.implements)||void 0===i||i.forEach((t=>this.addKeyword(t)))}function P(t,e,n){const i=t.rules.findIndex((t=>t.keyword===n));i>=0?t.rules.splice(i,0,e):(t.rules.push(e),this.logger.warn(`rule ${n} is not defined`))}function $(t){let{metaSchema:e}=t;void 0!==e&&(t.$data&&this.opts.$data&&(e=k(e)),t.validateSchema=this.compile(e,!0))}const R={$ref:"https://raw.githubusercontent.com/ajv-validator/ajv/master/lib/refs/data.json#"};function k(t){return{anyOf:[t,R]}}},9572:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(1678),o=n(7216),r=n(9547),s=n(8226),a=n(518),l=n(4588),c=n(5707),h=n(7082),u=["/properties"];e.default=function(t){return[i,o,r,s,a,e(this,l),c,e(this,h)].forEach((t=>this.addMetaSchema(t,void 0,!1))),this;function e(e,n){return t?e.$dataMetaSchema(n,u):n}}},6250:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(2017);i.code='require("ajv/dist/runtime/equal").default',e.default=i},3853:(t,e)=>{"use strict";function n(t){const e=t.length;let n,i=0,o=0;for(;o<e;)i++,n=t.charCodeAt(o++),n>=55296&&n<=56319&&o<e&&(n=t.charCodeAt(o),56320==(64512&n)&&o++);return i}Object.defineProperty(e,"__esModule",{value:!0}),e.default=n,n.code='require("ajv/dist/runtime/ucs2length").default'},5944:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(8343);i.code='require("ajv/dist/runtime/uri").default',e.default=i},3558:(t,e)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});class n extends Error{constructor(t){super("validation failed"),this.errors=t,this.ajv=this.validation=!0}}e.default=n},5457:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.validateAdditionalItems=void 0;const i=n(9029),o=n(4227),r={keyword:"additionalItems",type:"array",schemaType:["boolean","object"],before:"uniqueItems",error:{message:({params:{len:t}})=>i.str`must NOT have more than ${t} items`,params:({params:{len:t}})=>i._`{limit: ${t}}`},code(t){const{parentSchema:e,it:n}=t,{items:i}=e;Array.isArray(i)?s(t,i):(0,o.checkStrictMode)(n,'"additionalItems" is ignored when "items" is not an array of schemas')}};function s(t,e){const{gen:n,schema:r,data:s,keyword:a,it:l}=t;l.items=!0;const c=n.const("len",i._`${s}.length`);if(!1===r)t.setParams({len:e.length}),t.pass(i._`${c} <= ${e.length}`);else if("object"==typeof r&&!(0,o.alwaysValidSchema)(l,r)){const r=n.var("valid",i._`${c} <= ${e.length}`);n.if((0,i.not)(r),(()=>function(r){n.forRange("i",e.length,c,(e=>{t.subschema({keyword:a,dataProp:e,dataPropType:o.Type.Num},r),l.allErrors||n.if((0,i.not)(r),(()=>n.break()))}))}(r))),t.ok(r)}}e.validateAdditionalItems=s,e.default=r},8660:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(5765),o=n(9029),r=n(2023),s=n(4227),a={keyword:"additionalProperties",type:["object"],schemaType:["boolean","object"],allowUndefined:!0,trackErrors:!0,error:{message:"must NOT have additional properties",params:({params:t})=>o._`{additionalProperty: ${t.additionalProperty}}`},code(t){const{gen:e,schema:n,parentSchema:a,data:l,errsCount:c,it:h}=t;if(!c)throw new Error("ajv implementation error");const{allErrors:u,opts:d}=h;if(h.props=!0,"all"!==d.removeAdditional&&(0,s.alwaysValidSchema)(h,n))return;const p=(0,i.allSchemaProperties)(a.properties),m=(0,i.allSchemaProperties)(a.patternProperties);function f(t){e.code(o._`delete ${l}[${t}]`)}function g(i){if("all"===d.removeAdditional||d.removeAdditional&&!1===n)f(i);else{if(!1===n)return t.setParams({additionalProperty:i}),t.error(),void(u||e.break());if("object"==typeof n&&!(0,s.alwaysValidSchema)(h,n)){const n=e.name("valid");"failing"===d.removeAdditional?(y(i,n,!1),e.if((0,o.not)(n),(()=>{t.reset(),f(i)}))):(y(i,n),u||e.if((0,o.not)(n),(()=>e.break())))}}}function y(e,n,i){const o={keyword:"additionalProperties",dataProp:e,dataPropType:s.Type.Str};!1===i&&Object.assign(o,{compositeRule:!0,createErrors:!1,allErrors:!1}),t.subschema(o,n)}e.forIn("key",l,(n=>{p.length||m.length?e.if(function(n){let r;if(p.length>8){const t=(0,s.schemaRefOrVal)(h,a.properties,"properties");r=(0,i.isOwnProperty)(e,t,n)}else r=p.length?(0,o.or)(...p.map((t=>o._`${n} === ${t}`))):o.nil;return m.length&&(r=(0,o.or)(r,...m.map((e=>o._`${(0,i.usePattern)(t,e)}.test(${n})`)))),(0,o.not)(r)}(n),(()=>g(n))):g(n)})),t.ok(o._`${c} === ${r.default.errors}`)}};e.default=a},5844:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(4227),o={keyword:"allOf",schemaType:"array",code(t){const{gen:e,schema:n,it:o}=t;if(!Array.isArray(n))throw new Error("ajv implementation error");const r=e.name("valid");n.forEach(((e,n)=>{if((0,i.alwaysValidSchema)(o,e))return;const s=t.subschema({keyword:"allOf",schemaProp:n},r);t.ok(r),t.mergeEvaluated(s)}))}};e.default=o},6505:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i={keyword:"anyOf",schemaType:"array",trackErrors:!0,code:n(5765).validateUnion,error:{message:"must match a schema in anyOf"}};e.default=i},2661:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(4227),r={keyword:"contains",type:"array",schemaType:["object","boolean"],before:"uniqueItems",trackErrors:!0,error:{message:({params:{min:t,max:e}})=>void 0===e?i.str`must contain at least ${t} valid item(s)`:i.str`must contain at least ${t} and no more than ${e} valid item(s)`,params:({params:{min:t,max:e}})=>void 0===e?i._`{minContains: ${t}}`:i._`{minContains: ${t}, maxContains: ${e}}`},code(t){const{gen:e,schema:n,parentSchema:r,data:s,it:a}=t;let l,c;const{minContains:h,maxContains:u}=r;a.opts.next?(l=void 0===h?1:h,c=u):l=1;const d=e.const("len",i._`${s}.length`);if(t.setParams({min:l,max:c}),void 0===c&&0===l)return void(0,o.checkStrictMode)(a,'"minContains" == 0 without "maxContains": "contains" keyword ignored');if(void 0!==c&&l>c)return(0,o.checkStrictMode)(a,'"minContains" > "maxContains" is always invalid'),void t.fail();if((0,o.alwaysValidSchema)(a,n)){let e=i._`${d} >= ${l}`;return void 0!==c&&(e=i._`${e} && ${d} <= ${c}`),void t.pass(e)}a.items=!0;const p=e.name("valid");function m(){const t=e.name("_valid"),n=e.let("count",0);f(t,(()=>e.if(t,(()=>function(t){e.code(i._`${t}++`),void 0===c?e.if(i._`${t} >= ${l}`,(()=>e.assign(p,!0).break())):(e.if(i._`${t} > ${c}`,(()=>e.assign(p,!1).break())),1===l?e.assign(p,!0):e.if(i._`${t} >= ${l}`,(()=>e.assign(p,!0))))}(n)))))}function f(n,i){e.forRange("i",0,d,(e=>{t.subschema({keyword:"contains",dataProp:e,dataPropType:o.Type.Num,compositeRule:!0},n),i()}))}void 0===c&&1===l?f(p,(()=>e.if(p,(()=>e.break())))):0===l?(e.let(p,!0),void 0!==c&&e.if(i._`${s}.length > 0`,m)):(e.let(p,!1),m()),t.result(p,(()=>t.reset()))}};e.default=r},3025:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.validateSchemaDeps=e.validatePropertyDeps=e.error=void 0;const i=n(9029),o=n(4227),r=n(5765);e.error={message:({params:{property:t,depsCount:e,deps:n}})=>{const o=1===e?"property":"properties";return i.str`must have ${o} ${n} when property ${t} is present`},params:({params:{property:t,depsCount:e,deps:n,missingProperty:o}})=>i._`{property: ${t},
5
5
  missingProperty: ${o},
6
6
  depsCount: ${e},
7
- deps: ${n}}`};const s={keyword:"dependencies",type:"object",schemaType:"object",error:e.error,code(t){const[e,n]=function({schema:t}){const e={},n={};for(const i in t)"__proto__"!==i&&((Array.isArray(t[i])?e:n)[i]=t[i]);return[e,n]}(t);a(t,e),l(t,n)}};function a(t,e=t.schema){const{gen:n,data:o,it:s}=t;if(0===Object.keys(e).length)return;const a=n.let("missing");for(const l in e){const c=e[l];if(0===c.length)continue;const h=(0,r.propertyInData)(n,o,l,s.opts.ownProperties);t.setParams({property:l,depsCount:c.length,deps:c.join(", ")}),s.allErrors?n.if(h,(()=>{for(const e of c)(0,r.checkReportMissingProp)(t,e)})):(n.if(i._`${h} && (${(0,r.checkMissingProp)(t,c,a)})`),(0,r.reportMissingProp)(t,a),n.else())}}function l(t,e=t.schema){const{gen:n,data:i,keyword:s,it:a}=t,l=n.name("valid");for(const c in e)(0,o.alwaysValidSchema)(a,e[c])||(n.if((0,r.propertyInData)(n,i,c,a.opts.ownProperties),(()=>{const e=t.subschema({keyword:s,schemaProp:c},l);t.mergeValidEvaluated(e,l)}),(()=>n.var(l,!0))),t.ok(l))}e.validatePropertyDeps=a,e.validateSchemaDeps=l,e.default=s},4845:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(3025),o={keyword:"dependentSchemas",type:"object",schemaType:"object",code:t=>(0,i.validateSchemaDeps)(t)};e.default=o},1239:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(4227),r={keyword:"if",schemaType:["object","boolean"],trackErrors:!0,error:{message:({params:t})=>i.str`must match "${t.ifClause}" schema`,params:({params:t})=>i._`{failingKeyword: ${t.ifClause}}`},code(t){const{gen:e,parentSchema:n,it:r}=t;void 0===n.then&&void 0===n.else&&(0,o.checkStrictMode)(r,'"if" without "then" and "else" is ignored');const a=s(r,"then"),l=s(r,"else");if(!a&&!l)return;const c=e.let("valid",!0),h=e.name("_valid");if(function(){const e=t.subschema({keyword:"if",compositeRule:!0,createErrors:!1,allErrors:!1},h);t.mergeEvaluated(e)}(),t.reset(),a&&l){const n=e.let("ifClause");t.setParams({ifClause:n}),e.if(h,u("then",n),u("else",n))}else a?e.if(h,u("then")):e.if((0,i.not)(h),u("else"));function u(n,o){return()=>{const r=t.subschema({keyword:n},h);e.assign(c,h),t.mergeValidEvaluated(r,c),o?e.assign(o,i._`${n}`):t.setParams({ifClause:n})}}t.pass(c,(()=>t.error(!0)))}};function s(t,e){const n=t.schema[e];return void 0!==n&&!(0,o.alwaysValidSchema)(t,n)}e.default=r},6378:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(5457),o=n(5354),r=n(494),s=n(3966),a=n(2661),l=n(3025),c=n(2094),h=n(8660),u=n(117),d=n(5333),p=n(7923),m=n(6505),f=n(6163),g=n(5844),y=n(1239),b=n(4426);e.default=function(t=!1){const e=[p.default,m.default,f.default,g.default,y.default,b.default,c.default,h.default,l.default,u.default,d.default];return t?e.push(o.default,s.default):e.push(i.default,r.default),e.push(a.default),e}},494:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.validateTuple=void 0;const i=n(9029),o=n(4227),r=n(5765),s={keyword:"items",type:"array",schemaType:["object","array","boolean"],before:"uniqueItems",code(t){const{schema:e,it:n}=t;if(Array.isArray(e))return a(t,"additionalItems",e);n.items=!0,(0,o.alwaysValidSchema)(n,e)||t.ok((0,r.validateArray)(t))}};function a(t,e,n=t.schema){const{gen:r,parentSchema:s,data:a,keyword:l,it:c}=t;!function(t){const{opts:i,errSchemaPath:r}=c,s=n.length,a=s===t.minItems&&(s===t.maxItems||!1===t[e]);if(i.strictTuples&&!a){const t=`"${l}" is ${s}-tuple, but minItems or maxItems/${e} are not specified or different at path "${r}"`;(0,o.checkStrictMode)(c,t,i.strictTuples)}}(s),c.opts.unevaluated&&n.length&&!0!==c.items&&(c.items=o.mergeEvaluated.items(r,n.length,c.items));const h=r.name("valid"),u=r.const("len",i._`${a}.length`);n.forEach(((e,n)=>{(0,o.alwaysValidSchema)(c,e)||(r.if(i._`${u} > ${n}`,(()=>t.subschema({keyword:l,schemaProp:n,dataProp:n},h))),t.ok(h))}))}e.validateTuple=a,e.default=s},3966:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(4227),r=n(5765),s=n(5457),a={keyword:"items",type:"array",schemaType:["object","boolean"],before:"uniqueItems",error:{message:({params:{len:t}})=>i.str`must NOT have more than ${t} items`,params:({params:{len:t}})=>i._`{limit: ${t}}`},code(t){const{schema:e,parentSchema:n,it:i}=t,{prefixItems:a}=n;i.items=!0,(0,o.alwaysValidSchema)(i,e)||(a?(0,s.validateAdditionalItems)(t,a):t.ok((0,r.validateArray)(t)))}};e.default=a},7923:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(4227),o={keyword:"not",schemaType:["object","boolean"],trackErrors:!0,code(t){const{gen:e,schema:n,it:o}=t;if((0,i.alwaysValidSchema)(o,n))return void t.fail();const r=e.name("valid");t.subschema({keyword:"not",compositeRule:!0,createErrors:!1,allErrors:!1},r),t.failResult(r,(()=>t.reset()),(()=>t.error()))},error:{message:"must NOT be valid"}};e.default=o},6163:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(4227),r={keyword:"oneOf",schemaType:"array",trackErrors:!0,error:{message:"must match exactly one schema in oneOf",params:({params:t})=>i._`{passingSchemas: ${t.passing}}`},code(t){const{gen:e,schema:n,parentSchema:r,it:s}=t;if(!Array.isArray(n))throw new Error("ajv implementation error");if(s.opts.discriminator&&r.discriminator)return;const a=n,l=e.let("valid",!1),c=e.let("passing",null),h=e.name("_valid");t.setParams({passing:c}),e.block((function(){a.forEach(((n,r)=>{let a;(0,o.alwaysValidSchema)(s,n)?e.var(h,!0):a=t.subschema({keyword:"oneOf",schemaProp:r,compositeRule:!0},h),r>0&&e.if(i._`${h} && ${l}`).assign(l,!1).assign(c,i._`[${c}, ${r}]`).else(),e.if(h,(()=>{e.assign(l,!0),e.assign(c,r),a&&t.mergeEvaluated(a,i.Name)}))}))})),t.result(l,(()=>t.reset()),(()=>t.error(!0)))}};e.default=r},5333:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(5765),o=n(9029),r=n(4227),s=n(4227),a={keyword:"patternProperties",type:"object",schemaType:"object",code(t){const{gen:e,schema:n,data:a,parentSchema:l,it:c}=t,{opts:h}=c,u=(0,i.allSchemaProperties)(n),d=u.filter((t=>(0,r.alwaysValidSchema)(c,n[t])));if(0===u.length||d.length===u.length&&(!c.opts.unevaluated||!0===c.props))return;const p=h.strictSchema&&!h.allowMatchingProperties&&l.properties,m=e.name("valid");!0===c.props||c.props instanceof o.Name||(c.props=(0,s.evaluatedPropsToName)(e,c.props));const{props:f}=c;function g(t){for(const e in p)new RegExp(t).test(e)&&(0,r.checkStrictMode)(c,`property ${e} matches pattern ${t} (use allowMatchingProperties)`)}function y(n){e.forIn("key",a,(r=>{e.if(o._`${(0,i.usePattern)(t,n)}.test(${r})`,(()=>{const i=d.includes(n);i||t.subschema({keyword:"patternProperties",schemaProp:n,dataProp:r,dataPropType:s.Type.Str},m),c.opts.unevaluated&&!0!==f?e.assign(o._`${f}[${r}]`,!0):i||c.allErrors||e.if((0,o.not)(m),(()=>e.break()))}))}))}!function(){for(const t of u)p&&g(t),c.allErrors?y(t):(e.var(m,!0),y(t),e.if(m))}()}};e.default=a},5354:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(494),o={keyword:"prefixItems",type:"array",schemaType:["array"],before:"uniqueItems",code:t=>(0,i.validateTuple)(t,"items")};e.default=o},117:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(2586),o=n(5765),r=n(4227),s=n(8660),a={keyword:"properties",type:"object",schemaType:"object",code(t){const{gen:e,schema:n,parentSchema:a,data:l,it:c}=t;"all"===c.opts.removeAdditional&&void 0===a.additionalProperties&&s.default.code(new i.KeywordCxt(c,s.default,"additionalProperties"));const h=(0,o.allSchemaProperties)(n);for(const t of h)c.definedProperties.add(t);c.opts.unevaluated&&h.length&&!0!==c.props&&(c.props=r.mergeEvaluated.props(e,(0,r.toHash)(h),c.props));const u=h.filter((t=>!(0,r.alwaysValidSchema)(c,n[t])));if(0===u.length)return;const d=e.name("valid");for(const n of u)p(n)?m(n):(e.if((0,o.propertyInData)(e,l,n,c.opts.ownProperties)),m(n),c.allErrors||e.else().var(d,!0),e.endIf()),t.it.definedProperties.add(n),t.ok(d);function p(t){return c.opts.useDefaults&&!c.compositeRule&&void 0!==n[t].default}function m(e){t.subschema({keyword:"properties",schemaProp:e,dataProp:e},d)}}};e.default=a},2094:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(4227),r={keyword:"propertyNames",type:"object",schemaType:["object","boolean"],error:{message:"property name must be valid",params:({params:t})=>i._`{propertyName: ${t.propertyName}}`},code(t){const{gen:e,schema:n,data:r,it:s}=t;if((0,o.alwaysValidSchema)(s,n))return;const a=e.name("valid");e.forIn("key",r,(n=>{t.setParams({propertyName:n}),t.subschema({keyword:"propertyNames",data:n,dataTypes:["string"],propertyName:n,compositeRule:!0},a),e.if((0,i.not)(a),(()=>{t.error(!0),s.allErrors||e.break()}))})),t.ok(a)}};e.default=r},4426:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(4227),o={keyword:["then","else"],schemaType:["object","boolean"],code({keyword:t,parentSchema:e,it:n}){void 0===e.if&&(0,i.checkStrictMode)(n,`"${t}" without "if" is ignored`)}};e.default=o},5765:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.validateUnion=e.validateArray=e.usePattern=e.callValidateCode=e.schemaProperties=e.allSchemaProperties=e.noPropertyInData=e.propertyInData=e.isOwnProperty=e.hasPropFunc=e.reportMissingProp=e.checkMissingProp=e.checkReportMissingProp=void 0;const i=n(9029),o=n(4227),r=n(2023),s=n(4227);function a(t){return t.scopeValue("func",{ref:Object.prototype.hasOwnProperty,code:i._`Object.prototype.hasOwnProperty`})}function l(t,e,n){return i._`${a(t)}.call(${e}, ${n})`}function c(t,e,n,o){const r=i._`${e}${(0,i.getProperty)(n)} === undefined`;return o?(0,i.or)(r,(0,i.not)(l(t,e,n))):r}function h(t){return t?Object.keys(t).filter((t=>"__proto__"!==t)):[]}e.checkReportMissingProp=function(t,e){const{gen:n,data:o,it:r}=t;n.if(c(n,o,e,r.opts.ownProperties),(()=>{t.setParams({missingProperty:i._`${e}`},!0),t.error()}))},e.checkMissingProp=function({gen:t,data:e,it:{opts:n}},o,r){return(0,i.or)(...o.map((o=>(0,i.and)(c(t,e,o,n.ownProperties),i._`${r} = ${o}`))))},e.reportMissingProp=function(t,e){t.setParams({missingProperty:e},!0),t.error()},e.hasPropFunc=a,e.isOwnProperty=l,e.propertyInData=function(t,e,n,o){const r=i._`${e}${(0,i.getProperty)(n)} !== undefined`;return o?i._`${r} && ${l(t,e,n)}`:r},e.noPropertyInData=c,e.allSchemaProperties=h,e.schemaProperties=function(t,e){return h(e).filter((n=>!(0,o.alwaysValidSchema)(t,e[n])))},e.callValidateCode=function({schemaCode:t,data:e,it:{gen:n,topSchemaRef:o,schemaPath:s,errorPath:a},it:l},c,h,u){const d=u?i._`${t}, ${e}, ${o}${s}`:e,p=[[r.default.instancePath,(0,i.strConcat)(r.default.instancePath,a)],[r.default.parentData,l.parentData],[r.default.parentDataProperty,l.parentDataProperty],[r.default.rootData,r.default.rootData]];l.opts.dynamicRef&&p.push([r.default.dynamicAnchors,r.default.dynamicAnchors]);const m=i._`${d}, ${n.object(...p)}`;return h!==i.nil?i._`${c}.call(${h}, ${m})`:i._`${c}(${m})`};const u=i._`new RegExp`;e.usePattern=function({gen:t,it:{opts:e}},n){const o=e.unicodeRegExp?"u":"",{regExp:r}=e.code,a=r(n,o);return t.scopeValue("pattern",{key:a.toString(),ref:a,code:i._`${"new RegExp"===r.code?u:(0,s.useFunc)(t,r)}(${n}, ${o})`})},e.validateArray=function(t){const{gen:e,data:n,keyword:r,it:s}=t,a=e.name("valid");if(s.allErrors){const t=e.let("valid",!0);return l((()=>e.assign(t,!1))),t}return e.var(a,!0),l((()=>e.break())),a;function l(s){const l=e.const("len",i._`${n}.length`);e.forRange("i",0,l,(n=>{t.subschema({keyword:r,dataProp:n,dataPropType:o.Type.Num},a),e.if((0,i.not)(a),s)}))}},e.validateUnion=function(t){const{gen:e,schema:n,keyword:r,it:s}=t;if(!Array.isArray(n))throw new Error("ajv implementation error");if(n.some((t=>(0,o.alwaysValidSchema)(s,t)))&&!s.opts.unevaluated)return;const a=e.let("valid",!1),l=e.name("_valid");e.block((()=>n.forEach(((n,o)=>{const s=t.subschema({keyword:r,schemaProp:o,compositeRule:!0},l);e.assign(a,i._`${a} || ${l}`),t.mergeValidEvaluated(s,l)||e.if((0,i.not)(a))})))),t.result(a,(()=>t.reset()),(()=>t.error(!0)))}},3463:(t,e)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const n={keyword:"id",code(){throw new Error('NOT SUPPORTED: keyword "id", use "$id" for schema ID')}};e.default=n},2128:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(3463),o=n(3693),r=["$schema","$id","$defs","$vocabulary",{keyword:"$comment"},"definitions",i.default,o.default];e.default=r},3693:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.callRef=e.getValidate=void 0;const i=n(4551),o=n(5765),r=n(9029),s=n(2023),a=n(3835),l=n(4227),c={keyword:"$ref",schemaType:"string",code(t){const{gen:e,schema:n,it:o}=t,{baseId:s,schemaEnv:l,validateName:c,opts:d,self:p}=o,{root:m}=l;if(("#"===n||"#/"===n)&&s===m.baseId)return function(){if(l===m)return u(t,c,l,l.$async);const n=e.scopeValue("root",{ref:m});return u(t,r._`${n}.validate`,m,m.$async)}();const f=a.resolveRef.call(p,m,s,n);if(void 0===f)throw new i.default(o.opts.uriResolver,s,n);return f instanceof a.SchemaEnv?function(e){const n=h(t,e);u(t,n,e,e.$async)}(f):function(i){const o=e.scopeValue("schema",!0===d.code.source?{ref:i,code:(0,r.stringify)(i)}:{ref:i}),s=e.name("valid"),a=t.subschema({schema:i,dataTypes:[],schemaPath:r.nil,topSchemaRef:o,errSchemaPath:n},s);t.mergeEvaluated(a),t.ok(s)}(f)}};function h(t,e){const{gen:n}=t;return e.validate?n.scopeValue("validate",{ref:e.validate}):r._`${n.scopeValue("wrapper",{ref:e})}.validate`}function u(t,e,n,i){const{gen:a,it:c}=t,{allErrors:h,schemaEnv:u,opts:d}=c,p=d.passContext?s.default.this:r.nil;function m(t){const e=r._`${t}.errors`;a.assign(s.default.vErrors,r._`${s.default.vErrors} === null ? ${e} : ${s.default.vErrors}.concat(${e})`),a.assign(s.default.errors,r._`${s.default.vErrors}.length`)}function f(t){var e;if(!c.opts.unevaluated)return;const i=null===(e=null==n?void 0:n.validate)||void 0===e?void 0:e.evaluated;if(!0!==c.props)if(i&&!i.dynamicProps)void 0!==i.props&&(c.props=l.mergeEvaluated.props(a,i.props,c.props));else{const e=a.var("props",r._`${t}.evaluated.props`);c.props=l.mergeEvaluated.props(a,e,c.props,r.Name)}if(!0!==c.items)if(i&&!i.dynamicItems)void 0!==i.items&&(c.items=l.mergeEvaluated.items(a,i.items,c.items));else{const e=a.var("items",r._`${t}.evaluated.items`);c.items=l.mergeEvaluated.items(a,e,c.items,r.Name)}}i?function(){if(!u.$async)throw new Error("async schema referenced by sync schema");const n=a.let("valid");a.try((()=>{a.code(r._`await ${(0,o.callValidateCode)(t,e,p)}`),f(e),h||a.assign(n,!0)}),(t=>{a.if(r._`!(${t} instanceof ${c.ValidationError})`,(()=>a.throw(t))),m(t),h||a.assign(n,!1)})),t.ok(n)}():t.result((0,o.callValidateCode)(t,e,p),(()=>f(e)),(()=>m(e)))}e.getValidate=h,e.callRef=u,e.default=c},6653:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(7652),r=n(3835),s=n(4551),a=n(4227),l={keyword:"discriminator",type:"object",schemaType:"object",error:{message:({params:{discrError:t,tagName:e}})=>t===o.DiscrError.Tag?`tag "${e}" must be string`:`value of tag "${e}" must be in oneOf`,params:({params:{discrError:t,tag:e,tagName:n}})=>i._`{error: ${t}, tag: ${n}, tagValue: ${e}}`},code(t){const{gen:e,data:n,schema:l,parentSchema:c,it:h}=t,{oneOf:u}=c;if(!h.opts.discriminator)throw new Error("discriminator: requires discriminator option");const d=l.propertyName;if("string"!=typeof d)throw new Error("discriminator: requires propertyName");if(l.mapping)throw new Error("discriminator: mapping is not supported");if(!u)throw new Error("discriminator: requires oneOf keyword");const p=e.let("valid",!1),m=e.const("tag",i._`${n}${(0,i.getProperty)(d)}`);function f(n){const o=e.name("valid"),r=t.subschema({keyword:"oneOf",schemaProp:n},o);return t.mergeEvaluated(r,i.Name),o}e.if(i._`typeof ${m} == "string"`,(()=>function(){const n=function(){var t;const e={},n=o(c);let i=!0;for(let e=0;e<u.length;e++){let c=u[e];if((null==c?void 0:c.$ref)&&!(0,a.schemaHasRulesButRef)(c,h.self.RULES)){const t=c.$ref;if(c=r.resolveRef.call(h.self,h.schemaEnv.root,h.baseId,t),c instanceof r.SchemaEnv&&(c=c.schema),void 0===c)throw new s.default(h.opts.uriResolver,h.baseId,t)}const p=null===(t=null==c?void 0:c.properties)||void 0===t?void 0:t[d];if("object"!=typeof p)throw new Error(`discriminator: oneOf subschemas (or referenced schemas) must have "properties/${d}"`);i=i&&(n||o(c)),l(p,e)}if(!i)throw new Error(`discriminator: "${d}" must be required`);return e;function o({required:t}){return Array.isArray(t)&&t.includes(d)}function l(t,e){if(t.const)p(t.const,e);else{if(!t.enum)throw new Error(`discriminator: "properties/${d}" must have "const" or "enum"`);for(const n of t.enum)p(n,e)}}function p(t,n){if("string"!=typeof t||t in e)throw new Error(`discriminator: "${d}" values must be unique strings`);e[t]=n}}();e.if(!1);for(const t in n)e.elseIf(i._`${m} === ${t}`),e.assign(p,f(n[t]));e.else(),t.error(!1,{discrError:o.DiscrError.Mapping,tag:m,tagName:d}),e.endIf()}()),(()=>t.error(!1,{discrError:o.DiscrError.Tag,tag:m,tagName:d}))),t.ok(p)}};e.default=l},7652:(t,e)=>{"use strict";var n;Object.defineProperty(e,"__esModule",{value:!0}),e.DiscrError=void 0,function(t){t.Tag="tag",t.Mapping="mapping"}(n||(e.DiscrError=n={}))},6105:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(2128),o=n(7060),r=n(6378),s=n(5520),a=n(5413),l=n(3265),c=n(7532),h=n(9857),u=[s.default,i.default,o.default,(0,r.default)(!0),c.default,h.metadataVocabulary,h.contentVocabulary,a.default,l.default];e.default=u},6144:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(2128),o=n(7060),r=n(6378),s=n(7532),a=n(9857),l=[i.default,o.default,(0,r.default)(),s.default,a.metadataVocabulary,a.contentVocabulary];e.default=l},2476:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.dynamicAnchor=void 0;const i=n(9029),o=n(2023),r=n(3835),s=n(3693),a={keyword:"$dynamicAnchor",schemaType:"string",code:t=>l(t,t.schema)};function l(t,e){const{gen:n,it:a}=t;a.schemaEnv.root.dynamicAnchors[e]=!0;const l=i._`${o.default.dynamicAnchors}${(0,i.getProperty)(e)}`,c="#"===a.errSchemaPath?a.validateName:function(t){const{schemaEnv:e,schema:n,self:i}=t.it,{root:o,baseId:a,localRefs:l,meta:c}=e.root,{schemaId:h}=i.opts,u=new r.SchemaEnv({schema:n,schemaId:h,root:o,baseId:a,localRefs:l,meta:c});return r.compileSchema.call(i,u),(0,s.getValidate)(t,u)}(t);n.if(i._`!${l}`,(()=>n.assign(l,c)))}e.dynamicAnchor=l,e.default=a},3252:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.dynamicRef=void 0;const i=n(9029),o=n(2023),r=n(3693),s={keyword:"$dynamicRef",schemaType:"string",code:t=>a(t,t.schema)};function a(t,e){const{gen:n,keyword:s,it:a}=t;if("#"!==e[0])throw new Error(`"${s}" only supports hash fragment reference`);const l=e.slice(1);if(a.allErrors)c();else{const e=n.let("valid",!1);c(e),t.ok(e)}function c(t){if(a.schemaEnv.root.dynamicAnchors[l]){const e=n.let("_v",i._`${o.default.dynamicAnchors}${(0,i.getProperty)(l)}`);n.if(e,h(e,t),h(a.validateName,t))}else h(a.validateName,t)()}function h(e,i){return i?()=>n.block((()=>{(0,r.callRef)(t,e),n.let(i,!0)})):()=>(0,r.callRef)(t,e)}}e.dynamicRef=a,e.default=s},5520:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(2476),o=n(3252),r=n(2721),s=n(3799),a=[i.default,o.default,r.default,s.default];e.default=a},2721:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(2476),o=n(4227),r={keyword:"$recursiveAnchor",schemaType:"boolean",code(t){t.schema?(0,i.dynamicAnchor)(t,""):(0,o.checkStrictMode)(t.it,"$recursiveAnchor: false is ignored")}};e.default=r},3799:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(3252),o={keyword:"$recursiveRef",schemaType:"string",code:t=>(0,i.dynamicRef)(t,t.schema)};e.default=o},4737:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o={keyword:"format",type:["number","string"],schemaType:"string",$data:!0,error:{message:({schemaCode:t})=>i.str`must match format "${t}"`,params:({schemaCode:t})=>i._`{format: ${t}}`},code(t,e){const{gen:n,data:o,$data:r,schema:s,schemaCode:a,it:l}=t,{opts:c,errSchemaPath:h,schemaEnv:u,self:d}=l;c.validateFormats&&(r?function(){const r=n.scopeValue("formats",{ref:d.formats,code:c.code.formats}),s=n.const("fDef",i._`${r}[${a}]`),l=n.let("fType"),h=n.let("format");n.if(i._`typeof ${s} == "object" && !(${s} instanceof RegExp)`,(()=>n.assign(l,i._`${s}.type || "string"`).assign(h,i._`${s}.validate`)),(()=>n.assign(l,i._`"string"`).assign(h,s))),t.fail$data((0,i.or)(!1===c.strictSchema?i.nil:i._`${a} && !${h}`,function(){const t=u.$async?i._`(${s}.async ? await ${h}(${o}) : ${h}(${o}))`:i._`${h}(${o})`,n=i._`(typeof ${h} == "function" ? ${t} : ${h}.test(${o}))`;return i._`${h} && ${h} !== true && ${l} === ${e} && !${n}`}()))}():function(){const r=d.formats[s];if(!r)return void function(){if(!1!==c.strictSchema)throw new Error(t());function t(){return`unknown format "${s}" ignored in schema at path "${h}"`}d.logger.warn(t())}();if(!0===r)return;const[a,l,p]=function(t){const e=t instanceof RegExp?(0,i.regexpCode)(t):c.code.formats?i._`${c.code.formats}${(0,i.getProperty)(s)}`:void 0,o=n.scopeValue("formats",{key:s,ref:t,code:e});return"object"!=typeof t||t instanceof RegExp?["string",t,o]:[t.type||"string",t.validate,i._`${o}.validate`]}(r);a===e&&t.pass(function(){if("object"==typeof r&&!(r instanceof RegExp)&&r.async){if(!u.$async)throw new Error("async format in sync schema");return i._`await ${p}(${o})`}return"function"==typeof l?i._`${p}(${o})`:i._`${p}.test(${o})`}())}())}};e.default=o},7532:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=[n(4737).default];e.default=i},9857:(t,e)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.contentVocabulary=e.metadataVocabulary=void 0,e.metadataVocabulary=["title","description","default","deprecated","readOnly","writeOnly","examples"],e.contentVocabulary=["contentMediaType","contentEncoding","contentSchema"]},5413:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(1846),o=n(4845),r=n(2626),s=[i.default,o.default,r.default];e.default=s},3265:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(392),o=n(3445),r=[i.default,o.default];e.default=r},3445:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(4227),r={keyword:"unevaluatedItems",type:"array",schemaType:["boolean","object"],error:{message:({params:{len:t}})=>i.str`must NOT have more than ${t} items`,params:({params:{len:t}})=>i._`{limit: ${t}}`},code(t){const{gen:e,schema:n,data:r,it:s}=t,a=s.items||0;if(!0===a)return;const l=e.const("len",i._`${r}.length`);if(!1===n)t.setParams({len:a}),t.fail(i._`${l} > ${a}`);else if("object"==typeof n&&!(0,o.alwaysValidSchema)(s,n)){const n=e.var("valid",i._`${l} <= ${a}`);e.if((0,i.not)(n),(()=>function(n,r){e.forRange("i",r,l,(r=>{t.subschema({keyword:"unevaluatedItems",dataProp:r,dataPropType:o.Type.Num},n),s.allErrors||e.if((0,i.not)(n),(()=>e.break()))}))}(n,a))),t.ok(n)}s.items=!0}};e.default=r},392:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(4227),r=n(2023),s={keyword:"unevaluatedProperties",type:"object",schemaType:["boolean","object"],trackErrors:!0,error:{message:"must NOT have unevaluated properties",params:({params:t})=>i._`{unevaluatedProperty: ${t.unevaluatedProperty}}`},code(t){const{gen:e,schema:n,data:s,errsCount:a,it:l}=t;if(!a)throw new Error("ajv implementation error");const{allErrors:c,props:h}=l;function u(r){if(!1===n)return t.setParams({unevaluatedProperty:r}),t.error(),void(c||e.break());if(!(0,o.alwaysValidSchema)(l,n)){const n=e.name("valid");t.subschema({keyword:"unevaluatedProperties",dataProp:r,dataPropType:o.Type.Str},n),c||e.if((0,i.not)(n),(()=>e.break()))}}h instanceof i.Name?e.if(i._`${h} !== true`,(()=>e.forIn("key",s,(t=>e.if(function(t,e){return i._`!${t} || !${t}[${e}]`}(h,t),(()=>u(t))))))):!0!==h&&e.forIn("key",s,(t=>void 0===h?u(t):e.if(function(t,e){const n=[];for(const o in t)!0===t[o]&&n.push(i._`${e} !== ${o}`);return(0,i.and)(...n)}(h,t),(()=>u(t))))),l.props=!0,t.ok(i._`${a} === ${r.default.errors}`)}};e.default=s},7935:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(4227),r=n(6250),s={keyword:"const",$data:!0,error:{message:"must be equal to constant",params:({schemaCode:t})=>i._`{allowedValue: ${t}}`},code(t){const{gen:e,data:n,$data:s,schemaCode:a,schema:l}=t;s||l&&"object"==typeof l?t.fail$data(i._`!${(0,o.useFunc)(e,r.default)}(${n}, ${a})`):t.fail(i._`${l} !== ${n}`)}};e.default=s},1846:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(3025),o={keyword:"dependentRequired",type:"object",schemaType:"object",error:i.error,code:t=>(0,i.validatePropertyDeps)(t)};e.default=o},8643:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(4227),r=n(6250),s={keyword:"enum",schemaType:"array",$data:!0,error:{message:"must be equal to one of the allowed values",params:({schemaCode:t})=>i._`{allowedValues: ${t}}`},code(t){const{gen:e,data:n,$data:s,schema:a,schemaCode:l,it:c}=t;if(!s&&0===a.length)throw new Error("enum must have non-empty array");const h=a.length>=c.opts.loopEnum;let u;const d=()=>null!=u?u:u=(0,o.useFunc)(e,r.default);let p;if(h||s)p=e.let("valid"),t.block$data(p,(function(){e.assign(p,!1),e.forOf("v",l,(t=>e.if(i._`${d()}(${n}, ${t})`,(()=>e.assign(p,!0).break()))))}));else{if(!Array.isArray(a))throw new Error("ajv implementation error");const t=e.const("vSchema",l);p=(0,i.or)(...a.map(((e,o)=>function(t,e){const o=a[e];return"object"==typeof o&&null!==o?i._`${d()}(${n}, ${t}[${e}])`:i._`${n} === ${o}`}(t,o))))}t.pass(p)}};e.default=s},7060:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(5882),o=n(3439),r=n(7307),s=n(422),a=n(4486),l=n(4003),c=n(1163),h=n(617),u=n(7935),d=n(8643),p=[i.default,o.default,r.default,s.default,a.default,l.default,c.default,h.default,{keyword:"type",schemaType:["string","array"]},{keyword:"nullable",schemaType:"boolean"},u.default,d.default];e.default=p},2626:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(4227),o={keyword:["maxContains","minContains"],type:"array",schemaType:"number",code({keyword:t,parentSchema:e,it:n}){void 0===e.contains&&(0,i.checkStrictMode)(n,`"${t}" without "contains" is ignored`)}};e.default=o},1163:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o={keyword:["maxItems","minItems"],type:"array",schemaType:"number",$data:!0,error:{message({keyword:t,schemaCode:e}){const n="maxItems"===t?"more":"fewer";return i.str`must NOT have ${n} than ${e} items`},params:({schemaCode:t})=>i._`{limit: ${t}}`},code(t){const{keyword:e,data:n,schemaCode:o}=t,r="maxItems"===e?i.operators.GT:i.operators.LT;t.fail$data(i._`${n}.length ${r} ${o}`)}};e.default=o},7307:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(4227),r=n(3853),s={keyword:["maxLength","minLength"],type:"string",schemaType:"number",$data:!0,error:{message({keyword:t,schemaCode:e}){const n="maxLength"===t?"more":"fewer";return i.str`must NOT have ${n} than ${e} characters`},params:({schemaCode:t})=>i._`{limit: ${t}}`},code(t){const{keyword:e,data:n,schemaCode:s,it:a}=t,l="maxLength"===e?i.operators.GT:i.operators.LT,c=!1===a.opts.unicode?i._`${n}.length`:i._`${(0,o.useFunc)(t.gen,r.default)}(${n})`;t.fail$data(i._`${c} ${l} ${s}`)}};e.default=s},5882:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=i.operators,r={maximum:{okStr:"<=",ok:o.LTE,fail:o.GT},minimum:{okStr:">=",ok:o.GTE,fail:o.LT},exclusiveMaximum:{okStr:"<",ok:o.LT,fail:o.GTE},exclusiveMinimum:{okStr:">",ok:o.GT,fail:o.LTE}},s={message:({keyword:t,schemaCode:e})=>i.str`must be ${r[t].okStr} ${e}`,params:({keyword:t,schemaCode:e})=>i._`{comparison: ${r[t].okStr}, limit: ${e}}`},a={keyword:Object.keys(r),type:"number",schemaType:"number",$data:!0,error:s,code(t){const{keyword:e,data:n,schemaCode:o}=t;t.fail$data(i._`${n} ${r[e].fail} ${o} || isNaN(${n})`)}};e.default=a},4486:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o={keyword:["maxProperties","minProperties"],type:"object",schemaType:"number",$data:!0,error:{message({keyword:t,schemaCode:e}){const n="maxProperties"===t?"more":"fewer";return i.str`must NOT have ${n} than ${e} properties`},params:({schemaCode:t})=>i._`{limit: ${t}}`},code(t){const{keyword:e,data:n,schemaCode:o}=t,r="maxProperties"===e?i.operators.GT:i.operators.LT;t.fail$data(i._`Object.keys(${n}).length ${r} ${o}`)}};e.default=o},3439:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o={keyword:"multipleOf",type:"number",schemaType:"number",$data:!0,error:{message:({schemaCode:t})=>i.str`must be multiple of ${t}`,params:({schemaCode:t})=>i._`{multipleOf: ${t}}`},code(t){const{gen:e,data:n,schemaCode:o,it:r}=t,s=r.opts.multipleOfPrecision,a=e.let("res"),l=s?i._`Math.abs(Math.round(${a}) - ${a}) > 1e-${s}`:i._`${a} !== parseInt(${a})`;t.fail$data(i._`(${o} === 0 || (${a} = ${n}/${o}, ${l}))`)}};e.default=o},422:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(5765),o=n(9029),r={keyword:"pattern",type:"string",schemaType:"string",$data:!0,error:{message:({schemaCode:t})=>o.str`must match pattern "${t}"`,params:({schemaCode:t})=>o._`{pattern: ${t}}`},code(t){const{data:e,$data:n,schema:r,schemaCode:s,it:a}=t,l=a.opts.unicodeRegExp?"u":"",c=n?o._`(new RegExp(${s}, ${l}))`:(0,i.usePattern)(t,r);t.fail$data(o._`!${c}.test(${e})`)}};e.default=r},4003:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(5765),o=n(9029),r=n(4227),s={keyword:"required",type:"object",schemaType:"array",$data:!0,error:{message:({params:{missingProperty:t}})=>o.str`must have required property '${t}'`,params:({params:{missingProperty:t}})=>o._`{missingProperty: ${t}}`},code(t){const{gen:e,schema:n,schemaCode:s,data:a,$data:l,it:c}=t,{opts:h}=c;if(!l&&0===n.length)return;const u=n.length>=h.loopRequired;if(c.allErrors?function(){if(u||l)t.block$data(o.nil,d);else for(const e of n)(0,i.checkReportMissingProp)(t,e)}():function(){const r=e.let("missing");if(u||l){const n=e.let("valid",!0);t.block$data(n,(()=>function(n,r){t.setParams({missingProperty:n}),e.forOf(n,s,(()=>{e.assign(r,(0,i.propertyInData)(e,a,n,h.ownProperties)),e.if((0,o.not)(r),(()=>{t.error(),e.break()}))}),o.nil)}(r,n))),t.ok(n)}else e.if((0,i.checkMissingProp)(t,n,r)),(0,i.reportMissingProp)(t,r),e.else()}(),h.strictRequired){const e=t.parentSchema.properties,{definedProperties:i}=t.it;for(const t of n)if(void 0===(null==e?void 0:e[t])&&!i.has(t)){const e=`required property "${t}" is not defined at "${c.schemaEnv.baseId+c.errSchemaPath}" (strictRequired)`;(0,r.checkStrictMode)(c,e,c.opts.strictRequired)}}function d(){e.forOf("prop",s,(n=>{t.setParams({missingProperty:n}),e.if((0,i.noPropertyInData)(e,a,n,h.ownProperties),(()=>t.error()))}))}}};e.default=s},617:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(208),o=n(9029),r=n(4227),s=n(6250),a={keyword:"uniqueItems",type:"array",schemaType:"boolean",$data:!0,error:{message:({params:{i:t,j:e}})=>o.str`must NOT have duplicate items (items ## ${e} and ${t} are identical)`,params:({params:{i:t,j:e}})=>o._`{i: ${t}, j: ${e}}`},code(t){const{gen:e,data:n,$data:a,schema:l,parentSchema:c,schemaCode:h,it:u}=t;if(!a&&!l)return;const d=e.let("valid"),p=c.items?(0,i.getSchemaTypes)(c.items):[];function m(r,s){const a=e.name("item"),l=(0,i.checkDataTypes)(p,a,u.opts.strictNumbers,i.DataType.Wrong),c=e.const("indices",o._`{}`);e.for(o._`;${r}--;`,(()=>{e.let(a,o._`${n}[${r}]`),e.if(l,o._`continue`),p.length>1&&e.if(o._`typeof ${a} == "string"`,o._`${a} += "_"`),e.if(o._`typeof ${c}[${a}] == "number"`,(()=>{e.assign(s,o._`${c}[${a}]`),t.error(),e.assign(d,!1).break()})).code(o._`${c}[${a}] = ${r}`)}))}function f(i,a){const l=(0,r.useFunc)(e,s.default),c=e.name("outer");e.label(c).for(o._`;${i}--;`,(()=>e.for(o._`${a} = ${i}; ${a}--;`,(()=>e.if(o._`${l}(${n}[${i}], ${n}[${a}])`,(()=>{t.error(),e.assign(d,!1).break(c)}))))))}t.block$data(d,(function(){const i=e.let("i",o._`${n}.length`),r=e.let("j");t.setParams({i,j:r}),e.assign(d,!0),e.if(o._`${i} > 1`,(()=>(p.length>0&&!p.some((t=>"object"===t||"array"===t))?m:f)(i,r)))}),o._`${h} === false`),t.ok(d)}};e.default=a},5488:(t,e,n)=>{"use strict";n.d(e,{A:()=>a});var i=n(1354),o=n.n(i),r=n(6314),s=n.n(r)()(o());s.push([t.id,"\n.ui-form.ui-tooltip .ui-input-root > label.ui-input-label:not(:empty) {\n /* min-width: 30px; /* Breaks right margin /**/\n}\n\n.ui-form.ui-tooltip .ui-input-root > div.ui-input-text:not(:empty) {\n margin-top: 6px;\n}","",{version:3,sources:["webpack://./css/cell-renderer.css"],names:[],mappings:";AACA;IACI,8CAA8C;AAClD;;AAEA;IACI,eAAe;AACnB",sourcesContent:["\n.ui-form.ui-tooltip .ui-input-root > label.ui-input-label:not(:empty) {\n /* min-width: 30px; /* Breaks right margin /**/\n}\n\n.ui-form.ui-tooltip .ui-input-root > div.ui-input-text:not(:empty) {\n margin-top: 6px;\n}"],sourceRoot:""}]);const a=s},5999:(t,e,n)=>{"use strict";n.d(e,{A:()=>a});var i=n(1354),o=n.n(i),r=n(6314),s=n.n(r)()(o());s.push([t.id,".macromolecule-cell-comp-analysis-host{\n max-height: 250px;\n overflow-y: scroll;\n}\n\n.macromolecule-cell-comp-analysis-bar{\n height: inherit;\n display: block;\n margin-top: 1.5px;\n margin-bottom: 1.5px;\n margin-right: 3px;\n}\n\n.macromolecule-cell-comp-analysis-value{\n display: flex;\n}","",{version:3,sources:["webpack://./css/composition-analysis.css"],names:[],mappings:"AAAA;IACI,iBAAiB;IACjB,kBAAkB;AACtB;;AAEA;IACI,eAAe;IACf,cAAc;IACd,iBAAiB;IACjB,oBAAoB;IACpB,iBAAiB;AACrB;;AAEA;IACI,aAAa;AACjB",sourcesContent:[".macromolecule-cell-comp-analysis-host{\n max-height: 250px;\n overflow-y: scroll;\n}\n\n.macromolecule-cell-comp-analysis-bar{\n height: inherit;\n display: block;\n margin-top: 1.5px;\n margin-bottom: 1.5px;\n margin-right: 3px;\n}\n\n.macromolecule-cell-comp-analysis-value{\n display: flex;\n}"],sourceRoot:""}]);const a=s},857:(t,e,n)=>{"use strict";n.d(e,{A:()=>a});var i=n(1354),o=n.n(i),r=n(6314),s=n.n(r)()(o());s.push([t.id,".monomer-manager-root .grok-sketcher {\n min-width: unset !important;\n}\n\n.monomer-manager-root {\n width: 100% !important;\n height: 100% !important;\n}\n\n.monomer-manager-sketcher .ketcher-host {\n height: 100% !important;\n width: unset !important;\n} \n\n.monomer-manager-root > div:first-child {\n flex-basis: 40% !important;\n}\n.monomer-manager-root > div:nth-child(2) {\n flex-basis: 60% !important;\n}\n\n.monomer-manager-root > div:first-child > .ui-form {\n max-width: unset !important;\n}\n\n.monomer-card-info-row {\n width: 100%;\n overflow: hidden;\n text-overflow: ellipsis;\n margin-bottom: 10px;\n}\n\n.monomer-card-info-row > div:nth-child(2) {\n white-space: nowrap;\n overflow: hidden;\n text-overflow: ellipsis;\n}\n\n.monomer-card-info-row > div:nth-child(1) {\n font-weight: bold;\n margin-right: 5px;\n text-wrap: nowrap;\n}\n\n.duplicate-monomer-symbol-row {\n visibility: visible !important;\n}\n\n.monomer-card-root {\n border: 2px solid var(--grey-2);\n border-radius: 5px;\n padding: 5px;\n margin: 5px;\n overflow: hidden;\n align-items: center;\n cursor: pointer;\n width: 200px;\n height: 300px;\n min-width: 200px;\n min-height: 300px;\n}\n\n.duplicate-monomers-virtual-view {\n width: 100% !important;\n overflow-x: clip;\n overflow-y: auto;\n}\n\n.monomer-manager-form-tab-control input.d4-invalid {\n background: #ff000030;\n}\n\n.monomer-lib-controls-form .ui-input-root {\n flex-wrap: nowrap !important;\n}","",{version:3,sources:["webpack://./css/monomer-manager.css"],names:[],mappings:"AAAA;IACI,2BAA2B;AAC/B;;AAEA;IACI,sBAAsB;IACtB,uBAAuB;AAC3B;;AAEA;IACI,uBAAuB;IACvB,uBAAuB;AAC3B;;AAEA;IACI,0BAA0B;AAC9B;AACA;IACI,0BAA0B;AAC9B;;AAEA;IACI,2BAA2B;AAC/B;;AAEA;IACI,WAAW;IACX,gBAAgB;IAChB,uBAAuB;IACvB,mBAAmB;AACvB;;AAEA;IACI,mBAAmB;IACnB,gBAAgB;IAChB,uBAAuB;AAC3B;;AAEA;IACI,iBAAiB;IACjB,iBAAiB;IACjB,iBAAiB;AACrB;;AAEA;IACI,8BAA8B;AAClC;;AAEA;IACI,+BAA+B;IAC/B,kBAAkB;IAClB,YAAY;IACZ,WAAW;IACX,gBAAgB;IAChB,mBAAmB;IACnB,eAAe;IACf,YAAY;IACZ,aAAa;IACb,gBAAgB;IAChB,iBAAiB;AACrB;;AAEA;IACI,sBAAsB;IACtB,gBAAgB;IAChB,gBAAgB;AACpB;;AAEA;IACI,qBAAqB;AACzB;;AAEA;IACI,4BAA4B;AAChC",sourcesContent:[".monomer-manager-root .grok-sketcher {\n min-width: unset !important;\n}\n\n.monomer-manager-root {\n width: 100% !important;\n height: 100% !important;\n}\n\n.monomer-manager-sketcher .ketcher-host {\n height: 100% !important;\n width: unset !important;\n} \n\n.monomer-manager-root > div:first-child {\n flex-basis: 40% !important;\n}\n.monomer-manager-root > div:nth-child(2) {\n flex-basis: 60% !important;\n}\n\n.monomer-manager-root > div:first-child > .ui-form {\n max-width: unset !important;\n}\n\n.monomer-card-info-row {\n width: 100%;\n overflow: hidden;\n text-overflow: ellipsis;\n margin-bottom: 10px;\n}\n\n.monomer-card-info-row > div:nth-child(2) {\n white-space: nowrap;\n overflow: hidden;\n text-overflow: ellipsis;\n}\n\n.monomer-card-info-row > div:nth-child(1) {\n font-weight: bold;\n margin-right: 5px;\n text-wrap: nowrap;\n}\n\n.duplicate-monomer-symbol-row {\n visibility: visible !important;\n}\n\n.monomer-card-root {\n border: 2px solid var(--grey-2);\n border-radius: 5px;\n padding: 5px;\n margin: 5px;\n overflow: hidden;\n align-items: center;\n cursor: pointer;\n width: 200px;\n height: 300px;\n min-width: 200px;\n min-height: 300px;\n}\n\n.duplicate-monomers-virtual-view {\n width: 100% !important;\n overflow-x: clip;\n overflow-y: auto;\n}\n\n.monomer-manager-form-tab-control input.d4-invalid {\n background: #ff000030;\n}\n\n.monomer-lib-controls-form .ui-input-root {\n flex-wrap: nowrap !important;\n}"],sourceRoot:""}]);const a=s},6369:(t,e,n)=>{"use strict";n.d(e,{A:()=>a});var i=n(1354),o=n.n(i),r=n(6314),s=n.n(r)()(o());s.push([t.id,".kalign-version {\n margin-bottom: 0;\n text-align: end;\n font-size: 12px;\n opacity: 0.8;\n}\nbutton.msa-params-button.ui-btn {\n justify-content: end;\n}","",{version:3,sources:["webpack://./css/msa.css"],names:[],mappings:"AAAA;IACI,gBAAgB;IAChB,eAAe;IACf,eAAe;IACf,YAAY;AAChB;AACA;IACI,oBAAoB;AACxB",sourcesContent:[".kalign-version {\n margin-bottom: 0;\n text-align: end;\n font-size: 12px;\n opacity: 0.8;\n}\nbutton.msa-params-button.ui-btn {\n justify-content: end;\n}"],sourceRoot:""}]);const a=s},7939:(t,e,n)=>{"use strict";n.d(e,{A:()=>a});var i=n(1354),o=n.n(i),r=n(6314),s=n.n(r)()(o());s.push([t.id,".scatter_plot_link {\n right: 10px;\n}\n\n.cliffs_div {\n flex-grow: initial!important;\n justify-content: flex-end;\n flex-wrap: wrap;\n}\n\n.cliffs_grid {\n margin: 0!important;\n}\n\n.ml-dim-reduction-settings-input i.grok-icon.grok-font-icon-settings {\n font-size: 18px;\n position: absolute;\n height: 28px;\n}\n\n.ml-dim-reduction-settings-input i.grok-icon.grok-font-icon-settings:not(.ml-dim-reduction-column-editor-input-root i) {\n left: -20px;\n}\n.dlg-dimensionality-reduction.ui-form, .dlg-markov-clustering.ui-form, .dlg-markov-clustering.ui-form .ui-form, .dlg-dimensionality-reduction.ui-form .ui-form {\n max-width: unset;\n}\n\n.ml-dim-reduction-column-editor-input-root label {\n display: none !important;\n}\n\n.dim-reduction-dialog-form > .ui-input-root, .dim-reduction-dialog-form > div > .ui-input-root {\n margin-left: 10px;\n}\n\n.ml-dim-reduction-column-editor-input-root input, .ml-dim-reduction-column-editor-input-root select {\n margin-left: 20px !important;\n}\n\nh3.ml-dim-reduction-column-editor-input-root {\n margin: 0 !important;\n}\n\n.ml-dim-reduction-column-editor-root, .ml-dim-reduction-column-editor-header-root {\n display: flex;\n flex-direction: row;\n align-items: center;\n margin-bottom: 10px !important;\n width: 700px !important;\n}\n\n.ml-dim-reduction-column-editor-column-title {\n text-overflow: ellipsis;\n overflow: hidden;\n}\n\n.ml-dim-reduction-column-editor-header-root > h1:not(:first-child) {\n margin-left: 20px !important;\n}\n\n.ml-dim-reduction-column-editor-table-root .header > td:not(:first-child) {\n padding-left: 32px;\n}","",{version:3,sources:["webpack://./node_modules/@datagrok-libraries/ml/css/styles.css"],names:[],mappings:"AAAA;IACI,WAAW;AACf;;AAEA;IACI,4BAA4B;IAC5B,yBAAyB;IACzB,eAAe;AACnB;;AAEA;GACG,mBAAmB;AACtB;;AAEA;IACI,eAAe;IACf,kBAAkB;IAClB,YAAY;AAChB;;AAEA;IACI,WAAW;AACf;AACA;IACI,gBAAgB;AACpB;;AAEA;IACI,wBAAwB;AAC5B;;AAEA;IACI,iBAAiB;AACrB;;AAEA;IACI,4BAA4B;AAChC;;AAEA;IACI,oBAAoB;AACxB;;AAEA;IACI,aAAa;IACb,mBAAmB;IACnB,mBAAmB;IACnB,8BAA8B;IAC9B,uBAAuB;AAC3B;;AAEA;IACI,uBAAuB;IACvB,gBAAgB;AACpB;;AAEA;IACI,4BAA4B;AAChC;;AAEA;IACI,kBAAkB;AACtB",sourcesContent:[".scatter_plot_link {\n right: 10px;\n}\n\n.cliffs_div {\n flex-grow: initial!important;\n justify-content: flex-end;\n flex-wrap: wrap;\n}\n\n.cliffs_grid {\n margin: 0!important;\n}\n\n.ml-dim-reduction-settings-input i.grok-icon.grok-font-icon-settings {\n font-size: 18px;\n position: absolute;\n height: 28px;\n}\n\n.ml-dim-reduction-settings-input i.grok-icon.grok-font-icon-settings:not(.ml-dim-reduction-column-editor-input-root i) {\n left: -20px;\n}\n.dlg-dimensionality-reduction.ui-form, .dlg-markov-clustering.ui-form, .dlg-markov-clustering.ui-form .ui-form, .dlg-dimensionality-reduction.ui-form .ui-form {\n max-width: unset;\n}\n\n.ml-dim-reduction-column-editor-input-root label {\n display: none !important;\n}\n\n.dim-reduction-dialog-form > .ui-input-root, .dim-reduction-dialog-form > div > .ui-input-root {\n margin-left: 10px;\n}\n\n.ml-dim-reduction-column-editor-input-root input, .ml-dim-reduction-column-editor-input-root select {\n margin-left: 20px !important;\n}\n\nh3.ml-dim-reduction-column-editor-input-root {\n margin: 0 !important;\n}\n\n.ml-dim-reduction-column-editor-root, .ml-dim-reduction-column-editor-header-root {\n display: flex;\n flex-direction: row;\n align-items: center;\n margin-bottom: 10px !important;\n width: 700px !important;\n}\n\n.ml-dim-reduction-column-editor-column-title {\n text-overflow: ellipsis;\n overflow: hidden;\n}\n\n.ml-dim-reduction-column-editor-header-root > h1:not(:first-child) {\n margin-left: 20px !important;\n}\n\n.ml-dim-reduction-column-editor-table-root .header > td:not(:first-child) {\n padding-left: 32px;\n}"],sourceRoot:""}]);const a=s},3017:(t,e,n)=>{"use strict";n.d(e,{A:()=>a});var i=n(1354),o=n.n(i),r=n(6314),s=n.n(r)()(o());s.push([t.id,".monomer-lib-controls-form {\n margin-left: auto;\n margin-right: auto;\n display: flex;\n flex-direction: column;\n align-items: center;\n min-width: 220px;\n width: 100%;\n\n}\n","",{version:3,sources:["webpack://./src/utils/monomer-lib/library-file-manager/style.css"],names:[],mappings:"AAAA;EACE,iBAAiB;EACjB,kBAAkB;EAClB,aAAa;EACb,sBAAsB;EACtB,mBAAmB;EACnB,gBAAgB;EAChB,WAAW;;AAEb",sourcesContent:[".monomer-lib-controls-form {\n margin-left: auto;\n margin-right: auto;\n display: flex;\n flex-direction: column;\n align-items: center;\n min-width: 220px;\n width: 100%;\n\n}\n"],sourceRoot:""}]);const a=s},6314:t=>{"use strict";t.exports=function(t){var e=[];return e.toString=function(){return this.map((function(e){var n="",i=void 0!==e[5];return e[4]&&(n+="@supports (".concat(e[4],") {")),e[2]&&(n+="@media ".concat(e[2]," {")),i&&(n+="@layer".concat(e[5].length>0?" ".concat(e[5]):""," {")),n+=t(e),i&&(n+="}"),e[2]&&(n+="}"),e[4]&&(n+="}"),n})).join("")},e.i=function(t,n,i,o,r){"string"==typeof t&&(t=[[null,t,void 0]]);var s={};if(i)for(var a=0;a<this.length;a++){var l=this[a][0];null!=l&&(s[l]=!0)}for(var c=0;c<t.length;c++){var h=[].concat(t[c]);i&&s[h[0]]||(void 0!==r&&(void 0===h[5]||(h[1]="@layer".concat(h[5].length>0?" ".concat(h[5]):""," {").concat(h[1],"}")),h[5]=r),n&&(h[2]?(h[1]="@media ".concat(h[2]," {").concat(h[1],"}"),h[2]=n):h[2]=n),o&&(h[4]?(h[1]="@supports (".concat(h[4],") {").concat(h[1],"}"),h[4]=o):h[4]="".concat(o)),e.push(h))}},e}},1354:t=>{"use strict";t.exports=function(t){var e=t[1],n=t[3];if(!n)return e;if("function"==typeof btoa){var i=btoa(unescape(encodeURIComponent(JSON.stringify(n)))),o="sourceMappingURL=data:application/json;charset=utf-8;base64,".concat(i),r="/*# ".concat(o," */");return[e].concat([r]).join("\n")}return[e].join("\n")}},2017:t=>{"use strict";t.exports=function t(e,n){if(e===n)return!0;if(e&&n&&"object"==typeof e&&"object"==typeof n){if(e.constructor!==n.constructor)return!1;var i,o,r;if(Array.isArray(e)){if((i=e.length)!=n.length)return!1;for(o=i;0!=o--;)if(!t(e[o],n[o]))return!1;return!0}if(e.constructor===RegExp)return e.source===n.source&&e.flags===n.flags;if(e.valueOf!==Object.prototype.valueOf)return e.valueOf()===n.valueOf();if(e.toString!==Object.prototype.toString)return e.toString()===n.toString();if((i=(r=Object.keys(e)).length)!==Object.keys(n).length)return!1;for(o=i;0!=o--;)if(!Object.prototype.hasOwnProperty.call(n,r[o]))return!1;for(o=i;0!=o--;){var s=r[o];if(!t(e[s],n[s]))return!1}return!0}return e!=e&&n!=n}},9982:function(t,e,n){var i;!function(){var e={};!function(t){"use strict";t.__esModule=!0,t.digestLength=32,t.blockSize=64;var e=new Uint32Array([1116352408,1899447441,3049323471,3921009573,961987163,1508970993,2453635748,2870763221,3624381080,310598401,607225278,1426881987,1925078388,2162078206,2614888103,3248222580,3835390401,4022224774,264347078,604807628,770255983,1249150122,1555081692,1996064986,2554220882,2821834349,2952996808,3210313671,3336571891,3584528711,113926993,338241895,666307205,773529912,1294757372,1396182291,1695183700,1986661051,2177026350,2456956037,2730485921,2820302411,3259730800,3345764771,3516065817,3600352804,4094571909,275423344,430227734,506948616,659060556,883997877,958139571,1322822218,1537002063,1747873779,1955562222,2024104815,2227730452,2361852424,2428436474,2756734187,3204031479,3329325298]);function n(t,n,i,o,r){for(var s,a,l,c,h,u,d,p,m,f,g,y,b;r>=64;){for(s=n[0],a=n[1],l=n[2],c=n[3],h=n[4],u=n[5],d=n[6],p=n[7],f=0;f<16;f++)g=o+4*f,t[f]=(255&i[g])<<24|(255&i[g+1])<<16|(255&i[g+2])<<8|255&i[g+3];for(f=16;f<64;f++)y=((m=t[f-2])>>>17|m<<15)^(m>>>19|m<<13)^m>>>10,b=((m=t[f-15])>>>7|m<<25)^(m>>>18|m<<14)^m>>>3,t[f]=(y+t[f-7]|0)+(b+t[f-16]|0);for(f=0;f<64;f++)y=(((h>>>6|h<<26)^(h>>>11|h<<21)^(h>>>25|h<<7))+(h&u^~h&d)|0)+(p+(e[f]+t[f]|0)|0)|0,b=((s>>>2|s<<30)^(s>>>13|s<<19)^(s>>>22|s<<10))+(s&a^s&l^a&l)|0,p=d,d=u,u=h,h=c+y|0,c=l,l=a,a=s,s=y+b|0;n[0]+=s,n[1]+=a,n[2]+=l,n[3]+=c,n[4]+=h,n[5]+=u,n[6]+=d,n[7]+=p,o+=64,r-=64}return o}var i=function(){function e(){this.digestLength=t.digestLength,this.blockSize=t.blockSize,this.state=new Int32Array(8),this.temp=new Int32Array(64),this.buffer=new Uint8Array(128),this.bufferLength=0,this.bytesHashed=0,this.finished=!1,this.reset()}return e.prototype.reset=function(){return this.state[0]=1779033703,this.state[1]=3144134277,this.state[2]=1013904242,this.state[3]=2773480762,this.state[4]=1359893119,this.state[5]=2600822924,this.state[6]=528734635,this.state[7]=1541459225,this.bufferLength=0,this.bytesHashed=0,this.finished=!1,this},e.prototype.clean=function(){for(var t=0;t<this.buffer.length;t++)this.buffer[t]=0;for(t=0;t<this.temp.length;t++)this.temp[t]=0;this.reset()},e.prototype.update=function(t,e){if(void 0===e&&(e=t.length),this.finished)throw new Error("SHA256: can't update because hash was finished.");var i=0;if(this.bytesHashed+=e,this.bufferLength>0){for(;this.bufferLength<64&&e>0;)this.buffer[this.bufferLength++]=t[i++],e--;64===this.bufferLength&&(n(this.temp,this.state,this.buffer,0,64),this.bufferLength=0)}for(e>=64&&(i=n(this.temp,this.state,t,i,e),e%=64);e>0;)this.buffer[this.bufferLength++]=t[i++],e--;return this},e.prototype.finish=function(t){if(!this.finished){var e=this.bytesHashed,i=this.bufferLength,o=e/536870912|0,r=e<<3,s=e%64<56?64:128;this.buffer[i]=128;for(var a=i+1;a<s-8;a++)this.buffer[a]=0;this.buffer[s-8]=o>>>24&255,this.buffer[s-7]=o>>>16&255,this.buffer[s-6]=o>>>8&255,this.buffer[s-5]=o>>>0&255,this.buffer[s-4]=r>>>24&255,this.buffer[s-3]=r>>>16&255,this.buffer[s-2]=r>>>8&255,this.buffer[s-1]=r>>>0&255,n(this.temp,this.state,this.buffer,0,s),this.finished=!0}for(a=0;a<8;a++)t[4*a+0]=this.state[a]>>>24&255,t[4*a+1]=this.state[a]>>>16&255,t[4*a+2]=this.state[a]>>>8&255,t[4*a+3]=this.state[a]>>>0&255;return this},e.prototype.digest=function(){var t=new Uint8Array(this.digestLength);return this.finish(t),t},e.prototype._saveState=function(t){for(var e=0;e<this.state.length;e++)t[e]=this.state[e]},e.prototype._restoreState=function(t,e){for(var n=0;n<this.state.length;n++)this.state[n]=t[n];this.bytesHashed=e,this.finished=!1,this.bufferLength=0},e}();t.Hash=i;var o=function(){function t(t){this.inner=new i,this.outer=new i,this.blockSize=this.inner.blockSize,this.digestLength=this.inner.digestLength;var e=new Uint8Array(this.blockSize);if(t.length>this.blockSize)(new i).update(t).finish(e).clean();else for(var n=0;n<t.length;n++)e[n]=t[n];for(n=0;n<e.length;n++)e[n]^=54;for(this.inner.update(e),n=0;n<e.length;n++)e[n]^=106;for(this.outer.update(e),this.istate=new Uint32Array(8),this.ostate=new Uint32Array(8),this.inner._saveState(this.istate),this.outer._saveState(this.ostate),n=0;n<e.length;n++)e[n]=0}return t.prototype.reset=function(){return this.inner._restoreState(this.istate,this.inner.blockSize),this.outer._restoreState(this.ostate,this.outer.blockSize),this},t.prototype.clean=function(){for(var t=0;t<this.istate.length;t++)this.ostate[t]=this.istate[t]=0;this.inner.clean(),this.outer.clean()},t.prototype.update=function(t){return this.inner.update(t),this},t.prototype.finish=function(t){return this.outer.finished?this.outer.finish(t):(this.inner.finish(t),this.outer.update(t,this.digestLength).finish(t)),this},t.prototype.digest=function(){var t=new Uint8Array(this.digestLength);return this.finish(t),t},t}();function r(t){var e=(new i).update(t),n=e.digest();return e.clean(),n}function s(t,e){var n=new o(t).update(e),i=n.digest();return n.clean(),i}function a(t,e,n,i){var o=i[0];if(0===o)throw new Error("hkdf: cannot expand more");e.reset(),o>1&&e.update(t),n&&e.update(n),e.update(i),e.finish(t),i[0]++}t.HMAC=o,t.hash=r,t.default=r,t.hmac=s;var l=new Uint8Array(t.digestLength);t.hkdf=function(t,e,n,i){void 0===e&&(e=l),void 0===i&&(i=32);for(var r=new Uint8Array([1]),c=s(e,t),h=new o(c),u=new Uint8Array(h.digestLength),d=u.length,p=new Uint8Array(i),m=0;m<i;m++)d===u.length&&(a(u,h,n,r),d=0),p[m]=u[d++];return h.clean(),u.fill(0),r.fill(0),p},t.pbkdf2=function(t,e,n,i){for(var r=new o(t),s=r.digestLength,a=new Uint8Array(4),l=new Uint8Array(s),c=new Uint8Array(s),h=new Uint8Array(i),u=0;u*s<i;u++){var d=u+1;a[0]=d>>>24&255,a[1]=d>>>16&255,a[2]=d>>>8&255,a[3]=d>>>0&255,r.reset(),r.update(e),r.update(a),r.finish(c);for(var p=0;p<s;p++)l[p]=c[p];for(p=2;p<=n;p++){r.reset(),r.update(c).finish(c);for(var m=0;m<s;m++)l[m]^=c[m]}for(p=0;p<s&&u*s+p<i;p++)h[u*s+p]=l[p]}for(u=0;u<s;u++)l[u]=c[u]=0;for(u=0;u<4;u++)a[u]=0;return r.clean(),h}}(e);var o=e.default;for(var r in e)o[r]=e[r];"object"==typeof t.exports?t.exports=o:void 0===(i=function(){return o}.call(e,n,e,t))||(t.exports=i)}()},2787:(t,e,n)=>{"use strict";n.d(e,{I:()=>o});const i=new Uint32Array(65536),o=(t,e)=>{if(t.length<e.length){const n=e;e=t,t=n}return 0===e.length?t.length:t.length<=32?((t,e)=>{const n=t.length,o=e.length,r=1<<n-1;let s=-1,a=0,l=n,c=n;for(;c--;)i[t.charCodeAt(c)]|=1<<c;for(c=0;c<o;c++){let t=i[e.charCodeAt(c)];const n=t|a;t|=(t&s)+s^s,a|=~(t|s),s&=t,a&r&&l++,s&r&&l--,a=a<<1|1,s=s<<1|~(n|a),a&=n}for(c=n;c--;)i[t.charCodeAt(c)]=0;return l})(t,e):((t,e)=>{const n=e.length,o=t.length,r=[],s=[],a=Math.ceil(n/32),l=Math.ceil(o/32);for(let t=0;t<a;t++)s[t]=-1,r[t]=0;let c=0;for(;c<l-1;c++){let a=0,l=-1;const h=32*c,u=Math.min(32,o)+h;for(let e=h;e<u;e++)i[t.charCodeAt(e)]|=1<<e;for(let t=0;t<n;t++){const n=i[e.charCodeAt(t)],o=s[t/32|0]>>>t&1,c=r[t/32|0]>>>t&1,h=n|a,u=((n|c)&l)+l^l|n|c;let d=a|~(u|l),p=l&u;d>>>31^o&&(s[t/32|0]^=1<<t),p>>>31^c&&(r[t/32|0]^=1<<t),d=d<<1|o,p=p<<1|c,l=p|~(h|d),a=d&h}for(let e=h;e<u;e++)i[t.charCodeAt(e)]=0}let h=0,u=-1;const d=32*c,p=Math.min(32,o-d)+d;for(let e=d;e<p;e++)i[t.charCodeAt(e)]|=1<<e;let m=o;for(let t=0;t<n;t++){const n=i[e.charCodeAt(t)],a=s[t/32|0]>>>t&1,l=r[t/32|0]>>>t&1,c=n|h,d=((n|l)&u)+u^u|n|l;let p=h|~(d|u),f=u&d;m+=p>>>o-1&1,m-=f>>>o-1&1,p>>>31^a&&(s[t/32|0]^=1<<t),f>>>31^l&&(r[t/32|0]^=1<<t),p=p<<1|a,f=f<<1|l,u=f|~(c|p),h=p&c}for(let e=d;e<p;e++)i[t.charCodeAt(e)]=0;return m})(t,e)}},9937:t=>{t.exports={linLogMode:!1,outboundAttractionDistribution:!1,adjustSizes:!1,edgeWeightInfluence:1,scalingRatio:1,strongGravityMode:!1,gravity:1,slowDown:1,barnesHutOptimize:!1,barnesHutTheta:.5}},1782:(t,e)=>{e.assign=function(t){t=t||{};var e,n,i,o=Array.prototype.slice.call(arguments).slice(1);for(e=0,i=o.length;e<i;e++)if(o[e])for(n in o[e])t[n]=o[e][n];return t},e.validateSettings=function(t){return"linLogMode"in t&&"boolean"!=typeof t.linLogMode?{message:"the `linLogMode` setting should be a boolean."}:"outboundAttractionDistribution"in t&&"boolean"!=typeof t.outboundAttractionDistribution?{message:"the `outboundAttractionDistribution` setting should be a boolean."}:"adjustSizes"in t&&"boolean"!=typeof t.adjustSizes?{message:"the `adjustSizes` setting should be a boolean."}:"edgeWeightInfluence"in t&&"number"!=typeof t.edgeWeightInfluence?{message:"the `edgeWeightInfluence` setting should be a number."}:!("scalingRatio"in t)||"number"==typeof t.scalingRatio&&t.scalingRatio>=0?"strongGravityMode"in t&&"boolean"!=typeof t.strongGravityMode?{message:"the `strongGravityMode` setting should be a boolean."}:!("gravity"in t)||"number"==typeof t.gravity&&t.gravity>=0?"slowDown"in t&&!("number"==typeof t.slowDown||t.slowDown>=0)?{message:"the `slowDown` setting should be a number >= 0."}:"barnesHutOptimize"in t&&"boolean"!=typeof t.barnesHutOptimize?{message:"the `barnesHutOptimize` setting should be a boolean."}:!("barnesHutTheta"in t)||"number"==typeof t.barnesHutTheta&&t.barnesHutTheta>=0?null:{message:"the `barnesHutTheta` setting should be a number >= 0."}:{message:"the `gravity` setting should be a number >= 0."}:{message:"the `scalingRatio` setting should be a number >= 0."}},e.graphToByteArrays=function(t,e){var n,i=t.order,o=t.size,r={},s=new Float32Array(10*i),a=new Float32Array(3*o);return n=0,t.forEachNode((function(t,e){r[t]=n,s[n]=e.x,s[n+1]=e.y,s[n+2]=0,s[n+3]=0,s[n+4]=0,s[n+5]=0,s[n+6]=1,s[n+7]=1,s[n+8]=e.size||1,s[n+9]=e.fixed?1:0,n+=10})),n=0,t.forEachEdge((function(t,i,o,l,c,h,u){var d=r[o],p=r[l],m=e(t,i,o,l,c,h,u);s[d+6]+=m,s[p+6]+=m,a[n]=d,a[n+1]=p,a[n+2]=m,n+=3})),{nodes:s,edges:a}},e.assignLayoutChanges=function(t,e,n){var i=0;t.updateEachNodeAttributes((function(t,o){return o.x=e[i],o.y=e[i+1],i+=10,n?n(t,o):o}))},e.readGraphPositions=function(t,e){var n=0;t.forEachNode((function(t,i){e[n]=i.x,e[n+1]=i.y,n+=10}))},e.collectLayoutChanges=function(t,e,n){for(var i=t.nodes(),o={},r=0,s=0,a=e.length;r<a;r+=10){if(n){var l=Object.assign({},t.getNodeAttributes(i[s]));l.x=e[r],l.y=e[r+1],l=n(i[s],l),o[i[s]]={x:l.x,y:l.y}}else o[i[s]]={x:e[r],y:e[r+1]};s++}return o},e.createWorker=function(t){var e=window.URL||window.webkitURL,n=t.toString(),i=e.createObjectURL(new Blob(["("+n+").call(this);"],{type:"text/javascript"})),o=new Worker(i);return e.revokeObjectURL(i),o}},8903:(t,e,n)=>{var i=n(1736),o=n(8153).Fd,r=n(2561),s=n(1782),a=n(9937);function l(t,e,n){if(!i(e))throw new Error("graphology-layout-forceatlas2: the given graph is not a valid graphology instance.");"number"==typeof n&&(n={iterations:n});var l=n.iterations;if("number"!=typeof l)throw new Error("graphology-layout-forceatlas2: invalid number of iterations.");if(l<=0)throw new Error("graphology-layout-forceatlas2: you should provide a positive number of iterations.");var c=o("getEdgeWeight"in n?n.getEdgeWeight:"weight").fromEntry,h="function"==typeof n.outputReducer?n.outputReducer:null,u=s.assign({},a,n.settings),d=s.validateSettings(u);if(d)throw new Error("graphology-layout-forceatlas2: "+d.message);var p,m=s.graphToByteArrays(e,c);for(p=0;p<l;p++)r(u,m.nodes,m.edges);if(!t)return s.collectLayoutChanges(e,m.nodes);s.assignLayoutChanges(e,m.nodes,h)}var c=l.bind(null,!1);c.assign=l.bind(null,!0),c.inferSettings=function(t){var e="number"==typeof t?t:t.order;return{barnesHutOptimize:e>2e3,strongGravityMode:!0,gravity:.05,scalingRatio:10,slowDown:1+Math.log(e)}},t.exports=c},2561:t=>{var e=10;t.exports=function(t,n,i){var o,r,s,a,l,c,h,u,d,p,m,f,g,y,b,v,w,C,A,S,x,E,T,_=n.length,M=i.length,I=t.adjustSizes,L=t.barnesHutTheta*t.barnesHutTheta,N=[];for(s=0;s<_;s+=e)n[s+4]=n[s+2],n[s+5]=n[s+3],n[s+2]=0,n[s+3]=0;if(t.outboundAttractionDistribution){for(m=0,s=0;s<_;s+=e)m+=n[s+6];m/=_/e}if(t.barnesHutOptimize){var P,$,R,k=1/0,O=-1/0,H=1/0,G=-1/0;for(s=0;s<_;s+=e)k=Math.min(k,n[s+0]),O=Math.max(O,n[s+0]),H=Math.min(H,n[s+1]),G=Math.max(G,n[s+1]);var F=O-k,D=G-H;for(F>D?G=(H-=(F-D)/2)+F:O=(k-=(D-F)/2)+D,N[0]=-1,N[1]=(k+O)/2,N[2]=(H+G)/2,N[3]=Math.max(O-k,G-H),N[4]=-1,N[5]=-1,N[6]=0,N[7]=0,N[8]=0,o=1,s=0;s<_;s+=e)for(r=0,R=3;;){if(!(N[r+5]>=0)){if(N[r+0]<0){N[r+0]=s;break}if(N[r+5]=9*o,u=N[r+3]/2,N[(d=N[r+5])+0]=-1,N[d+1]=N[r+1]-u,N[d+2]=N[r+2]-u,N[d+3]=u,N[d+4]=d+9,N[d+5]=-1,N[d+6]=0,N[d+7]=0,N[d+8]=0,N[(d+=9)+0]=-1,N[d+1]=N[r+1]-u,N[d+2]=N[r+2]+u,N[d+3]=u,N[d+4]=d+9,N[d+5]=-1,N[d+6]=0,N[d+7]=0,N[d+8]=0,N[(d+=9)+0]=-1,N[d+1]=N[r+1]+u,N[d+2]=N[r+2]-u,N[d+3]=u,N[d+4]=d+9,N[d+5]=-1,N[d+6]=0,N[d+7]=0,N[d+8]=0,N[(d+=9)+0]=-1,N[d+1]=N[r+1]+u,N[d+2]=N[r+2]+u,N[d+3]=u,N[d+4]=N[r+4],N[d+5]=-1,N[d+6]=0,N[d+7]=0,N[d+8]=0,o+=4,P=n[N[r+0]+0]<N[r+1]?n[N[r+0]+1]<N[r+2]?N[r+5]:N[r+5]+9:n[N[r+0]+1]<N[r+2]?N[r+5]+18:N[r+5]+27,N[r+6]=n[N[r+0]+6],N[r+7]=n[N[r+0]+0],N[r+8]=n[N[r+0]+1],N[P+0]=N[r+0],N[r+0]=-1,P===($=n[s+0]<N[r+1]?n[s+1]<N[r+2]?N[r+5]:N[r+5]+9:n[s+1]<N[r+2]?N[r+5]+18:N[r+5]+27)){if(R--){r=P;continue}R=3;break}N[$+0]=s;break}P=n[s+0]<N[r+1]?n[s+1]<N[r+2]?N[r+5]:N[r+5]+9:n[s+1]<N[r+2]?N[r+5]+18:N[r+5]+27,N[r+7]=(N[r+7]*N[r+6]+n[s+0]*n[s+6])/(N[r+6]+n[s+6]),N[r+8]=(N[r+8]*N[r+6]+n[s+1]*n[s+6])/(N[r+6]+n[s+6]),N[r+6]+=n[s+6],r=P}}if(t.barnesHutOptimize){for(f=t.scalingRatio,s=0;s<_;s+=e)for(r=0;;)if(N[r+5]>=0){if(v=Math.pow(n[s+0]-N[r+7],2)+Math.pow(n[s+1]-N[r+8],2),4*(p=N[r+3])*p/v<L){if(g=n[s+0]-N[r+7],y=n[s+1]-N[r+8],!0===I?v>0?(w=f*n[s+6]*N[r+6]/v,n[s+2]+=g*w,n[s+3]+=y*w):v<0&&(w=-f*n[s+6]*N[r+6]/Math.sqrt(v),n[s+2]+=g*w,n[s+3]+=y*w):v>0&&(w=f*n[s+6]*N[r+6]/v,n[s+2]+=g*w,n[s+3]+=y*w),(r=N[r+4])<0)break;continue}r=N[r+5]}else if((c=N[r+0])>=0&&c!==s&&(v=(g=n[s+0]-n[c+0])*g+(y=n[s+1]-n[c+1])*y,!0===I?v>0?(w=f*n[s+6]*n[c+6]/v,n[s+2]+=g*w,n[s+3]+=y*w):v<0&&(w=-f*n[s+6]*n[c+6]/Math.sqrt(v),n[s+2]+=g*w,n[s+3]+=y*w):v>0&&(w=f*n[s+6]*n[c+6]/v,n[s+2]+=g*w,n[s+3]+=y*w)),(r=N[r+4])<0)break}else for(f=t.scalingRatio,a=0;a<_;a+=e)for(l=0;l<a;l+=e)g=n[a+0]-n[l+0],y=n[a+1]-n[l+1],!0===I?(v=Math.sqrt(g*g+y*y)-n[a+8]-n[l+8])>0?(w=f*n[a+6]*n[l+6]/v/v,n[a+2]+=g*w,n[a+3]+=y*w,n[l+2]-=g*w,n[l+3]-=y*w):v<0&&(w=100*f*n[a+6]*n[l+6],n[a+2]+=g*w,n[a+3]+=y*w,n[l+2]-=g*w,n[l+3]-=y*w):(v=Math.sqrt(g*g+y*y))>0&&(w=f*n[a+6]*n[l+6]/v/v,n[a+2]+=g*w,n[a+3]+=y*w,n[l+2]-=g*w,n[l+3]-=y*w);for(d=t.gravity/t.scalingRatio,f=t.scalingRatio,s=0;s<_;s+=e)w=0,g=n[s+0],y=n[s+1],v=Math.sqrt(Math.pow(g,2)+Math.pow(y,2)),t.strongGravityMode?v>0&&(w=f*n[s+6]*d):v>0&&(w=f*n[s+6]*d/v),n[s+2]-=g*w,n[s+3]-=y*w;for(f=1*(t.outboundAttractionDistribution?m:1),h=0;h<M;h+=3)a=i[h+0],l=i[h+1],u=i[h+2],b=Math.pow(u,t.edgeWeightInfluence),g=n[a+0]-n[l+0],y=n[a+1]-n[l+1],!0===I?(v=Math.sqrt(g*g+y*y)-n[a+8]-n[l+8],t.linLogMode?t.outboundAttractionDistribution?v>0&&(w=-f*b*Math.log(1+v)/v/n[a+6]):v>0&&(w=-f*b*Math.log(1+v)/v):t.outboundAttractionDistribution?v>0&&(w=-f*b/n[a+6]):v>0&&(w=-f*b)):(v=Math.sqrt(Math.pow(g,2)+Math.pow(y,2)),t.linLogMode?t.outboundAttractionDistribution?v>0&&(w=-f*b*Math.log(1+v)/v/n[a+6]):v>0&&(w=-f*b*Math.log(1+v)/v):t.outboundAttractionDistribution?(v=1,w=-f*b/n[a+6]):(v=1,w=-f*b)),v>0&&(n[a+2]+=g*w,n[a+3]+=y*w,n[l+2]-=g*w,n[l+3]-=y*w);if(!0===I)for(s=0;s<_;s+=e)1!==n[s+9]&&((C=Math.sqrt(Math.pow(n[s+2],2)+Math.pow(n[s+3],2)))>10&&(n[s+2]=10*n[s+2]/C,n[s+3]=10*n[s+3]/C),A=n[s+6]*Math.sqrt((n[s+4]-n[s+2])*(n[s+4]-n[s+2])+(n[s+5]-n[s+3])*(n[s+5]-n[s+3])),S=Math.sqrt((n[s+4]+n[s+2])*(n[s+4]+n[s+2])+(n[s+5]+n[s+3])*(n[s+5]+n[s+3]))/2,x=.1*Math.log(1+S)/(1+Math.sqrt(A)),E=n[s+0]+n[s+2]*(x/t.slowDown),n[s+0]=E,T=n[s+1]+n[s+3]*(x/t.slowDown),n[s+1]=T);else for(s=0;s<_;s+=e)1!==n[s+9]&&(A=n[s+6]*Math.sqrt((n[s+4]-n[s+2])*(n[s+4]-n[s+2])+(n[s+5]-n[s+3])*(n[s+5]-n[s+3])),S=Math.sqrt((n[s+4]+n[s+2])*(n[s+4]+n[s+2])+(n[s+5]+n[s+3])*(n[s+5]+n[s+3]))/2,x=n[s+7]*Math.log(1+S)/(1+Math.sqrt(A)),n[s+7]=Math.min(1,Math.sqrt(x*(Math.pow(n[s+2],2)+Math.pow(n[s+3],2))/(1+Math.sqrt(A)))),E=n[s+0]+n[s+2]*(x/t.slowDown),n[s+0]=E,T=n[s+1]+n[s+3]*(x/t.slowDown),n[s+1]=T);return{}}},8153:(t,e)=>{function n(t){return"number"!=typeof t||isNaN(t)?1:t}e.Fd=function(t){return function(t,e){var n={},i=function(t){return void 0===t?e:t};"function"==typeof e&&(i=e);var o=function(e){return i(e[t])},r=function(){return i(void 0)};return"string"==typeof t?(n.fromAttributes=o,n.fromGraph=function(t,e){return o(t.getEdgeAttributes(e))},n.fromEntry=function(t,e){return o(e)},n.fromPartialEntry=n.fromEntry,n.fromMinimalEntry=n.fromEntry):"function"==typeof t?(n.fromAttributes=function(){throw new Error("graphology-utils/getters/createEdgeValueGetter: irrelevant usage.")},n.fromGraph=function(e,n){var o=e.extremities(n);return i(t(n,e.getEdgeAttributes(n),o[0],o[1],e.getNodeAttributes(o[0]),e.getNodeAttributes(o[1]),e.isUndirected(n)))},n.fromEntry=function(e,n,o,r,s,a,l){return i(t(e,n,o,r,s,a,l))},n.fromPartialEntry=function(e,n,o,r){return i(t(e,n,o,r))},n.fromMinimalEntry=function(e,n){return i(t(e,n))}):(n.fromAttributes=r,n.fromGraph=r,n.fromEntry=r,n.fromMinimalEntry=r),n}(t,n)}},1736:t=>{t.exports=function(t){return null!==t&&"object"==typeof t&&"function"==typeof t.addUndirectedEdgeWithKey&&"function"==typeof t.dropNode&&"boolean"==typeof t.multi}},934:function(t){t.exports=function(){"use strict";function t(e){return(t="function"==typeof Symbol&&"symbol"==typeof Symbol.iterator?function(t){return typeof t}:function(t){return t&&"function"==typeof Symbol&&t.constructor===Symbol&&t!==Symbol.prototype?"symbol":typeof t})(e)}function e(t,e){t.prototype=Object.create(e.prototype),t.prototype.constructor=t,i(t,e)}function n(t){return n=Object.setPrototypeOf?Object.getPrototypeOf.bind():function(t){return t.__proto__||Object.getPrototypeOf(t)},n(t)}function i(t,e){return i=Object.setPrototypeOf?Object.setPrototypeOf.bind():function(t,e){return t.__proto__=e,t},i(t,e)}function o(t,e,n){return o=function(){if("undefined"==typeof Reflect||!Reflect.construct)return!1;if(Reflect.construct.sham)return!1;if("function"==typeof Proxy)return!0;try{return Boolean.prototype.valueOf.call(Reflect.construct(Boolean,[],(function(){}))),!0}catch(t){return!1}}()?Reflect.construct.bind():function(t,e,n){var o=[null];o.push.apply(o,e);var r=new(Function.bind.apply(t,o));return n&&i(r,n.prototype),r},o.apply(null,arguments)}function r(t){var e="function"==typeof Map?new Map:void 0;return r=function(t){if(null===t||(r=t,-1===Function.toString.call(r).indexOf("[native code]")))return t;var r;if("function"!=typeof t)throw new TypeError("Super expression must either be null or a function");if(void 0!==e){if(e.has(t))return e.get(t);e.set(t,s)}function s(){return o(t,arguments,n(this).constructor)}return s.prototype=Object.create(t.prototype,{constructor:{value:s,enumerable:!1,writable:!0,configurable:!0}}),i(s,t)},r(t)}function s(t){if(void 0===t)throw new ReferenceError("this hasn't been initialised - super() hasn't been called");return t}var a=function(){for(var t=arguments[0],e=1,n=arguments.length;e<n;e++)if(arguments[e])for(var i in arguments[e])t[i]=arguments[e][i];return t};function l(t,e,n,i){var o=t._nodes.get(e),r=null;return o?r="mixed"===i?o.out&&o.out[n]||o.undirected&&o.undirected[n]:"directed"===i?o.out&&o.out[n]:o.undirected&&o.undirected[n]:r}function c(e){return"object"===t(e)&&null!==e}function h(t){var e;for(e in t)return!1;return!0}function u(t,e,n){Object.defineProperty(t,e,{enumerable:!1,configurable:!1,writable:!0,value:n})}function d(t,e,n){var i={enumerable:!0,configurable:!0};"function"==typeof n?i.get=n:(i.value=n,i.writable=!1),Object.defineProperty(t,e,i)}function p(t){return!(!c(t)||t.attributes&&!Array.isArray(t.attributes))}"function"==typeof Object.assign&&(a=Object.assign);var m,f={exports:{}},g="object"==typeof Reflect?Reflect:null,y=g&&"function"==typeof g.apply?g.apply:function(t,e,n){return Function.prototype.apply.call(t,e,n)};m=g&&"function"==typeof g.ownKeys?g.ownKeys:Object.getOwnPropertySymbols?function(t){return Object.getOwnPropertyNames(t).concat(Object.getOwnPropertySymbols(t))}:function(t){return Object.getOwnPropertyNames(t)};var b=Number.isNaN||function(t){return t!=t};function v(){v.init.call(this)}f.exports=v,f.exports.once=function(t,e){return new Promise((function(n,i){function o(n){t.removeListener(e,r),i(n)}function r(){"function"==typeof t.removeListener&&t.removeListener("error",o),n([].slice.call(arguments))}I(t,e,r,{once:!0}),"error"!==e&&function(t,e){"function"==typeof t.on&&I(t,"error",e,{once:!0})}(t,o)}))},v.EventEmitter=v,v.prototype._events=void 0,v.prototype._eventsCount=0,v.prototype._maxListeners=void 0;var w=10;function C(t){if("function"!=typeof t)throw new TypeError('The "listener" argument must be of type Function. Received type '+typeof t)}function A(t){return void 0===t._maxListeners?v.defaultMaxListeners:t._maxListeners}function S(t,e,n,i){var o,r,s,a;if(C(n),void 0===(r=t._events)?(r=t._events=Object.create(null),t._eventsCount=0):(void 0!==r.newListener&&(t.emit("newListener",e,n.listener?n.listener:n),r=t._events),s=r[e]),void 0===s)s=r[e]=n,++t._eventsCount;else if("function"==typeof s?s=r[e]=i?[n,s]:[s,n]:i?s.unshift(n):s.push(n),(o=A(t))>0&&s.length>o&&!s.warned){s.warned=!0;var l=new Error("Possible EventEmitter memory leak detected. "+s.length+" "+String(e)+" listeners added. Use emitter.setMaxListeners() to increase limit");l.name="MaxListenersExceededWarning",l.emitter=t,l.type=e,l.count=s.length,a=l,console&&console.warn&&console.warn(a)}return t}function x(){if(!this.fired)return this.target.removeListener(this.type,this.wrapFn),this.fired=!0,0===arguments.length?this.listener.call(this.target):this.listener.apply(this.target,arguments)}function E(t,e,n){var i={fired:!1,wrapFn:void 0,target:t,type:e,listener:n},o=x.bind(i);return o.listener=n,i.wrapFn=o,o}function T(t,e,n){var i=t._events;if(void 0===i)return[];var o=i[e];return void 0===o?[]:"function"==typeof o?n?[o.listener||o]:[o]:n?function(t){for(var e=new Array(t.length),n=0;n<e.length;++n)e[n]=t[n].listener||t[n];return e}(o):M(o,o.length)}function _(t){var e=this._events;if(void 0!==e){var n=e[t];if("function"==typeof n)return 1;if(void 0!==n)return n.length}return 0}function M(t,e){for(var n=new Array(e),i=0;i<e;++i)n[i]=t[i];return n}function I(t,e,n,i){if("function"==typeof t.on)i.once?t.once(e,n):t.on(e,n);else{if("function"!=typeof t.addEventListener)throw new TypeError('The "emitter" argument must be of type EventEmitter. Received type '+typeof t);t.addEventListener(e,(function o(r){i.once&&t.removeEventListener(e,o),n(r)}))}}function L(t){if("function"!=typeof t)throw new Error("obliterator/iterator: expecting a function!");this.next=t}Object.defineProperty(v,"defaultMaxListeners",{enumerable:!0,get:function(){return w},set:function(t){if("number"!=typeof t||t<0||b(t))throw new RangeError('The value of "defaultMaxListeners" is out of range. It must be a non-negative number. Received '+t+".");w=t}}),v.init=function(){void 0!==this._events&&this._events!==Object.getPrototypeOf(this)._events||(this._events=Object.create(null),this._eventsCount=0),this._maxListeners=this._maxListeners||void 0},v.prototype.setMaxListeners=function(t){if("number"!=typeof t||t<0||b(t))throw new RangeError('The value of "n" is out of range. It must be a non-negative number. Received '+t+".");return this._maxListeners=t,this},v.prototype.getMaxListeners=function(){return A(this)},v.prototype.emit=function(t){for(var e=[],n=1;n<arguments.length;n++)e.push(arguments[n]);var i="error"===t,o=this._events;if(void 0!==o)i=i&&void 0===o.error;else if(!i)return!1;if(i){var r;if(e.length>0&&(r=e[0]),r instanceof Error)throw r;var s=new Error("Unhandled error."+(r?" ("+r.message+")":""));throw s.context=r,s}var a=o[t];if(void 0===a)return!1;if("function"==typeof a)y(a,this,e);else{var l=a.length,c=M(a,l);for(n=0;n<l;++n)y(c[n],this,e)}return!0},v.prototype.addListener=function(t,e){return S(this,t,e,!1)},v.prototype.on=v.prototype.addListener,v.prototype.prependListener=function(t,e){return S(this,t,e,!0)},v.prototype.once=function(t,e){return C(e),this.on(t,E(this,t,e)),this},v.prototype.prependOnceListener=function(t,e){return C(e),this.prependListener(t,E(this,t,e)),this},v.prototype.removeListener=function(t,e){var n,i,o,r,s;if(C(e),void 0===(i=this._events))return this;if(void 0===(n=i[t]))return this;if(n===e||n.listener===e)0==--this._eventsCount?this._events=Object.create(null):(delete i[t],i.removeListener&&this.emit("removeListener",t,n.listener||e));else if("function"!=typeof n){for(o=-1,r=n.length-1;r>=0;r--)if(n[r]===e||n[r].listener===e){s=n[r].listener,o=r;break}if(o<0)return this;0===o?n.shift():function(t,e){for(;e+1<t.length;e++)t[e]=t[e+1];t.pop()}(n,o),1===n.length&&(i[t]=n[0]),void 0!==i.removeListener&&this.emit("removeListener",t,s||e)}return this},v.prototype.off=v.prototype.removeListener,v.prototype.removeAllListeners=function(t){var e,n,i;if(void 0===(n=this._events))return this;if(void 0===n.removeListener)return 0===arguments.length?(this._events=Object.create(null),this._eventsCount=0):void 0!==n[t]&&(0==--this._eventsCount?this._events=Object.create(null):delete n[t]),this;if(0===arguments.length){var o,r=Object.keys(n);for(i=0;i<r.length;++i)"removeListener"!==(o=r[i])&&this.removeAllListeners(o);return this.removeAllListeners("removeListener"),this._events=Object.create(null),this._eventsCount=0,this}if("function"==typeof(e=n[t]))this.removeListener(t,e);else if(void 0!==e)for(i=e.length-1;i>=0;i--)this.removeListener(t,e[i]);return this},v.prototype.listeners=function(t){return T(this,t,!0)},v.prototype.rawListeners=function(t){return T(this,t,!1)},v.listenerCount=function(t,e){return"function"==typeof t.listenerCount?t.listenerCount(e):_.call(t,e)},v.prototype.listenerCount=_,v.prototype.eventNames=function(){return this._eventsCount>0?m(this._events):[]},"undefined"!=typeof Symbol&&(L.prototype[Symbol.iterator]=function(){return this}),L.of=function(){var t=arguments,e=t.length,n=0;return new L((function(){return n>=e?{done:!0}:{done:!1,value:t[n++]}}))},L.empty=function(){return new L((function(){return{done:!0}}))},L.fromSequence=function(t){var e=0,n=t.length;return new L((function(){return e>=n?{done:!0}:{done:!1,value:t[e++]}}))},L.is=function(t){return t instanceof L||"object"==typeof t&&null!==t&&"function"==typeof t.next};var N=L,P={};P.ARRAY_BUFFER_SUPPORT="undefined"!=typeof ArrayBuffer,P.SYMBOL_SUPPORT="undefined"!=typeof Symbol;var $=N,R=P,k=R.ARRAY_BUFFER_SUPPORT,O=R.SYMBOL_SUPPORT,H=function(t){var e=function(t){return"string"==typeof t||Array.isArray(t)||k&&ArrayBuffer.isView(t)?$.fromSequence(t):"object"!=typeof t||null===t?null:O&&"function"==typeof t[Symbol.iterator]?t[Symbol.iterator]():"function"==typeof t.next?t:null}(t);if(!e)throw new Error("obliterator: target is not iterable nor a valid iterator.");return e},G=H,F=function(t,e){for(var n,i=arguments.length>1?e:1/0,o=i!==1/0?new Array(i):[],r=0,s=G(t);;){if(r===i)return o;if((n=s.next()).done)return r!==e&&(o.length=r),o;o[r++]=n.value}},D=function(t){function n(e){var n;return(n=t.call(this)||this).name="GraphError",n.message=e,n}return e(n,t),n}(r(Error)),B=function(t){function n(e){var i;return(i=t.call(this,e)||this).name="InvalidArgumentsGraphError","function"==typeof Error.captureStackTrace&&Error.captureStackTrace(s(i),n.prototype.constructor),i}return e(n,t),n}(D),V=function(t){function n(e){var i;return(i=t.call(this,e)||this).name="NotFoundGraphError","function"==typeof Error.captureStackTrace&&Error.captureStackTrace(s(i),n.prototype.constructor),i}return e(n,t),n}(D),W=function(t){function n(e){var i;return(i=t.call(this,e)||this).name="UsageGraphError","function"==typeof Error.captureStackTrace&&Error.captureStackTrace(s(i),n.prototype.constructor),i}return e(n,t),n}(D);function U(t,e){this.key=t,this.attributes=e,this.clear()}function j(t,e){this.key=t,this.attributes=e,this.clear()}function q(t,e){this.key=t,this.attributes=e,this.clear()}function z(t,e,n,i,o){this.key=e,this.attributes=o,this.undirected=t,this.source=n,this.target=i}function Y(t,e,n,i,o,r,s){var a,l,c,h;if(i=""+i,0===n){if(!(a=t._nodes.get(i)))throw new V("Graph.".concat(e,': could not find the "').concat(i,'" node in the graph.'));c=o,h=r}else if(3===n){if(o=""+o,!(l=t._edges.get(o)))throw new V("Graph.".concat(e,': could not find the "').concat(o,'" edge in the graph.'));var u=l.source.key,d=l.target.key;if(i===u)a=l.target;else{if(i!==d)throw new V("Graph.".concat(e,': the "').concat(i,'" node is not attached to the "').concat(o,'" edge (').concat(u,", ").concat(d,")."));a=l.source}c=r,h=s}else{if(!(l=t._edges.get(i)))throw new V("Graph.".concat(e,': could not find the "').concat(i,'" edge in the graph.'));a=1===n?l.source:l.target,c=o,h=r}return[a,c,h]}U.prototype.clear=function(){this.inDegree=0,this.outDegree=0,this.undirectedDegree=0,this.undirectedLoops=0,this.directedLoops=0,this.in={},this.out={},this.undirected={}},j.prototype.clear=function(){this.inDegree=0,this.outDegree=0,this.directedLoops=0,this.in={},this.out={}},q.prototype.clear=function(){this.undirectedDegree=0,this.undirectedLoops=0,this.undirected={}},z.prototype.attach=function(){var t="out",e="in";this.undirected&&(t=e="undirected");var n=this.source.key,i=this.target.key;this.source[t][i]=this,this.undirected&&n===i||(this.target[e][n]=this)},z.prototype.attachMulti=function(){var t="out",e="in",n=this.source.key,i=this.target.key;this.undirected&&(t=e="undirected");var o=this.source[t],r=o[i];if(void 0===r)return o[i]=this,void(this.undirected&&n===i||(this.target[e][n]=this));r.previous=this,this.next=r,o[i]=this,this.target[e][n]=this},z.prototype.detach=function(){var t=this.source.key,e=this.target.key,n="out",i="in";this.undirected&&(n=i="undirected"),delete this.source[n][e],delete this.target[i][t]},z.prototype.detachMulti=function(){var t=this.source.key,e=this.target.key,n="out",i="in";this.undirected&&(n=i="undirected"),void 0===this.previous?void 0===this.next?(delete this.source[n][e],delete this.target[i][t]):(this.next.previous=void 0,this.source[n][e]=this.next,this.target[i][t]=this.next):(this.previous.next=this.next,void 0!==this.next&&(this.next.previous=this.previous))};var K=[{name:function(t){return"get".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o){var r=Y(this,e,n,t,i,o),s=r[0],a=r[1];return s.attributes[a]}}},{name:function(t){return"get".concat(t,"Attributes")},attacher:function(t,e,n){t.prototype[e]=function(t,i){return Y(this,e,n,t,i)[0].attributes}}},{name:function(t){return"has".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o){var r=Y(this,e,n,t,i,o),s=r[0],a=r[1];return s.attributes.hasOwnProperty(a)}}},{name:function(t){return"set".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o,r){var s=Y(this,e,n,t,i,o,r),a=s[0],l=s[1],c=s[2];return a.attributes[l]=c,this.emit("nodeAttributesUpdated",{key:a.key,type:"set",attributes:a.attributes,name:l}),this}}},{name:function(t){return"update".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o,r){var s=Y(this,e,n,t,i,o,r),a=s[0],l=s[1],c=s[2];if("function"!=typeof c)throw new B("Graph.".concat(e,": updater should be a function."));var h=a.attributes,u=c(h[l]);return h[l]=u,this.emit("nodeAttributesUpdated",{key:a.key,type:"set",attributes:a.attributes,name:l}),this}}},{name:function(t){return"remove".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o){var r=Y(this,e,n,t,i,o),s=r[0],a=r[1];return delete s.attributes[a],this.emit("nodeAttributesUpdated",{key:s.key,type:"remove",attributes:s.attributes,name:a}),this}}},{name:function(t){return"replace".concat(t,"Attributes")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o){var r=Y(this,e,n,t,i,o),s=r[0],a=r[1];if(!c(a))throw new B("Graph.".concat(e,": provided attributes are not a plain object."));return s.attributes=a,this.emit("nodeAttributesUpdated",{key:s.key,type:"replace",attributes:s.attributes}),this}}},{name:function(t){return"merge".concat(t,"Attributes")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o){var r=Y(this,e,n,t,i,o),s=r[0],l=r[1];if(!c(l))throw new B("Graph.".concat(e,": provided attributes are not a plain object."));return a(s.attributes,l),this.emit("nodeAttributesUpdated",{key:s.key,type:"merge",attributes:s.attributes,data:l}),this}}},{name:function(t){return"update".concat(t,"Attributes")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o){var r=Y(this,e,n,t,i,o),s=r[0],a=r[1];if("function"!=typeof a)throw new B("Graph.".concat(e,": provided updater is not a function."));return s.attributes=a(s.attributes),this.emit("nodeAttributesUpdated",{key:s.key,type:"update",attributes:s.attributes}),this}}}],Z=[{name:function(t){return"get".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i){var o;if("mixed"!==this.type&&"mixed"!==n&&n!==this.type)throw new W("Graph.".concat(e,": cannot find this type of edges in your ").concat(this.type," graph."));if(arguments.length>2){if(this.multi)throw new W("Graph.".concat(e,": cannot use a {source,target} combo when asking about an edge's attributes in a MultiGraph since we cannot infer the one you want information about."));var r=""+t,s=""+i;if(i=arguments[2],!(o=l(this,r,s,n)))throw new V("Graph.".concat(e,': could not find an edge for the given path ("').concat(r,'" - "').concat(s,'").'))}else{if("mixed"!==n)throw new W("Graph.".concat(e,": calling this method with only a key (vs. a source and target) does not make sense since an edge with this key could have the other type."));if(t=""+t,!(o=this._edges.get(t)))throw new V("Graph.".concat(e,': could not find the "').concat(t,'" edge in the graph.'))}return o.attributes[i]}}},{name:function(t){return"get".concat(t,"Attributes")},attacher:function(t,e,n){t.prototype[e]=function(t){var i;if("mixed"!==this.type&&"mixed"!==n&&n!==this.type)throw new W("Graph.".concat(e,": cannot find this type of edges in your ").concat(this.type," graph."));if(arguments.length>1){if(this.multi)throw new W("Graph.".concat(e,": cannot use a {source,target} combo when asking about an edge's attributes in a MultiGraph since we cannot infer the one you want information about."));var o=""+t,r=""+arguments[1];if(!(i=l(this,o,r,n)))throw new V("Graph.".concat(e,': could not find an edge for the given path ("').concat(o,'" - "').concat(r,'").'))}else{if("mixed"!==n)throw new W("Graph.".concat(e,": calling this method with only a key (vs. a source and target) does not make sense since an edge with this key could have the other type."));if(t=""+t,!(i=this._edges.get(t)))throw new V("Graph.".concat(e,': could not find the "').concat(t,'" edge in the graph.'))}return i.attributes}}},{name:function(t){return"has".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i){var o;if("mixed"!==this.type&&"mixed"!==n&&n!==this.type)throw new W("Graph.".concat(e,": cannot find this type of edges in your ").concat(this.type," graph."));if(arguments.length>2){if(this.multi)throw new W("Graph.".concat(e,": cannot use a {source,target} combo when asking about an edge's attributes in a MultiGraph since we cannot infer the one you want information about."));var r=""+t,s=""+i;if(i=arguments[2],!(o=l(this,r,s,n)))throw new V("Graph.".concat(e,': could not find an edge for the given path ("').concat(r,'" - "').concat(s,'").'))}else{if("mixed"!==n)throw new W("Graph.".concat(e,": calling this method with only a key (vs. a source and target) does not make sense since an edge with this key could have the other type."));if(t=""+t,!(o=this._edges.get(t)))throw new V("Graph.".concat(e,': could not find the "').concat(t,'" edge in the graph.'))}return o.attributes.hasOwnProperty(i)}}},{name:function(t){return"set".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o){var r;if("mixed"!==this.type&&"mixed"!==n&&n!==this.type)throw new W("Graph.".concat(e,": cannot find this type of edges in your ").concat(this.type," graph."));if(arguments.length>3){if(this.multi)throw new W("Graph.".concat(e,": cannot use a {source,target} combo when asking about an edge's attributes in a MultiGraph since we cannot infer the one you want information about."));var s=""+t,a=""+i;if(i=arguments[2],o=arguments[3],!(r=l(this,s,a,n)))throw new V("Graph.".concat(e,': could not find an edge for the given path ("').concat(s,'" - "').concat(a,'").'))}else{if("mixed"!==n)throw new W("Graph.".concat(e,": calling this method with only a key (vs. a source and target) does not make sense since an edge with this key could have the other type."));if(t=""+t,!(r=this._edges.get(t)))throw new V("Graph.".concat(e,': could not find the "').concat(t,'" edge in the graph.'))}return r.attributes[i]=o,this.emit("edgeAttributesUpdated",{key:r.key,type:"set",attributes:r.attributes,name:i}),this}}},{name:function(t){return"update".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o){var r;if("mixed"!==this.type&&"mixed"!==n&&n!==this.type)throw new W("Graph.".concat(e,": cannot find this type of edges in your ").concat(this.type," graph."));if(arguments.length>3){if(this.multi)throw new W("Graph.".concat(e,": cannot use a {source,target} combo when asking about an edge's attributes in a MultiGraph since we cannot infer the one you want information about."));var s=""+t,a=""+i;if(i=arguments[2],o=arguments[3],!(r=l(this,s,a,n)))throw new V("Graph.".concat(e,': could not find an edge for the given path ("').concat(s,'" - "').concat(a,'").'))}else{if("mixed"!==n)throw new W("Graph.".concat(e,": calling this method with only a key (vs. a source and target) does not make sense since an edge with this key could have the other type."));if(t=""+t,!(r=this._edges.get(t)))throw new V("Graph.".concat(e,': could not find the "').concat(t,'" edge in the graph.'))}if("function"!=typeof o)throw new B("Graph.".concat(e,": updater should be a function."));return r.attributes[i]=o(r.attributes[i]),this.emit("edgeAttributesUpdated",{key:r.key,type:"set",attributes:r.attributes,name:i}),this}}},{name:function(t){return"remove".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i){var o;if("mixed"!==this.type&&"mixed"!==n&&n!==this.type)throw new W("Graph.".concat(e,": cannot find this type of edges in your ").concat(this.type," graph."));if(arguments.length>2){if(this.multi)throw new W("Graph.".concat(e,": cannot use a {source,target} combo when asking about an edge's attributes in a MultiGraph since we cannot infer the one you want information about."));var r=""+t,s=""+i;if(i=arguments[2],!(o=l(this,r,s,n)))throw new V("Graph.".concat(e,': could not find an edge for the given path ("').concat(r,'" - "').concat(s,'").'))}else{if("mixed"!==n)throw new W("Graph.".concat(e,": calling this method with only a key (vs. a source and target) does not make sense since an edge with this key could have the other type."));if(t=""+t,!(o=this._edges.get(t)))throw new V("Graph.".concat(e,': could not find the "').concat(t,'" edge in the graph.'))}return delete o.attributes[i],this.emit("edgeAttributesUpdated",{key:o.key,type:"remove",attributes:o.attributes,name:i}),this}}},{name:function(t){return"replace".concat(t,"Attributes")},attacher:function(t,e,n){t.prototype[e]=function(t,i){var o;if("mixed"!==this.type&&"mixed"!==n&&n!==this.type)throw new W("Graph.".concat(e,": cannot find this type of edges in your ").concat(this.type," graph."));if(arguments.length>2){if(this.multi)throw new W("Graph.".concat(e,": cannot use a {source,target} combo when asking about an edge's attributes in a MultiGraph since we cannot infer the one you want information about."));var r=""+t,s=""+i;if(i=arguments[2],!(o=l(this,r,s,n)))throw new V("Graph.".concat(e,': could not find an edge for the given path ("').concat(r,'" - "').concat(s,'").'))}else{if("mixed"!==n)throw new W("Graph.".concat(e,": calling this method with only a key (vs. a source and target) does not make sense since an edge with this key could have the other type."));if(t=""+t,!(o=this._edges.get(t)))throw new V("Graph.".concat(e,': could not find the "').concat(t,'" edge in the graph.'))}if(!c(i))throw new B("Graph.".concat(e,": provided attributes are not a plain object."));return o.attributes=i,this.emit("edgeAttributesUpdated",{key:o.key,type:"replace",attributes:o.attributes}),this}}},{name:function(t){return"merge".concat(t,"Attributes")},attacher:function(t,e,n){t.prototype[e]=function(t,i){var o;if("mixed"!==this.type&&"mixed"!==n&&n!==this.type)throw new W("Graph.".concat(e,": cannot find this type of edges in your ").concat(this.type," graph."));if(arguments.length>2){if(this.multi)throw new W("Graph.".concat(e,": cannot use a {source,target} combo when asking about an edge's attributes in a MultiGraph since we cannot infer the one you want information about."));var r=""+t,s=""+i;if(i=arguments[2],!(o=l(this,r,s,n)))throw new V("Graph.".concat(e,': could not find an edge for the given path ("').concat(r,'" - "').concat(s,'").'))}else{if("mixed"!==n)throw new W("Graph.".concat(e,": calling this method with only a key (vs. a source and target) does not make sense since an edge with this key could have the other type."));if(t=""+t,!(o=this._edges.get(t)))throw new V("Graph.".concat(e,': could not find the "').concat(t,'" edge in the graph.'))}if(!c(i))throw new B("Graph.".concat(e,": provided attributes are not a plain object."));return a(o.attributes,i),this.emit("edgeAttributesUpdated",{key:o.key,type:"merge",attributes:o.attributes,data:i}),this}}},{name:function(t){return"update".concat(t,"Attributes")},attacher:function(t,e,n){t.prototype[e]=function(t,i){var o;if("mixed"!==this.type&&"mixed"!==n&&n!==this.type)throw new W("Graph.".concat(e,": cannot find this type of edges in your ").concat(this.type," graph."));if(arguments.length>2){if(this.multi)throw new W("Graph.".concat(e,": cannot use a {source,target} combo when asking about an edge's attributes in a MultiGraph since we cannot infer the one you want information about."));var r=""+t,s=""+i;if(i=arguments[2],!(o=l(this,r,s,n)))throw new V("Graph.".concat(e,': could not find an edge for the given path ("').concat(r,'" - "').concat(s,'").'))}else{if("mixed"!==n)throw new W("Graph.".concat(e,": calling this method with only a key (vs. a source and target) does not make sense since an edge with this key could have the other type."));if(t=""+t,!(o=this._edges.get(t)))throw new V("Graph.".concat(e,': could not find the "').concat(t,'" edge in the graph.'))}if("function"!=typeof i)throw new B("Graph.".concat(e,": provided updater is not a function."));return o.attributes=i(o.attributes),this.emit("edgeAttributesUpdated",{key:o.key,type:"update",attributes:o.attributes}),this}}}],X=N,J=H,Q=function(){var t=arguments,e=null,n=-1;return new X((function(){for(var i=null;;){if(null===e){if(++n>=t.length)return{done:!0};e=J(t[n])}if(!0!==(i=e.next()).done)break;e=null}return i}))},tt=[{name:"edges",type:"mixed"},{name:"inEdges",type:"directed",direction:"in"},{name:"outEdges",type:"directed",direction:"out"},{name:"inboundEdges",type:"mixed",direction:"in"},{name:"outboundEdges",type:"mixed",direction:"out"},{name:"directedEdges",type:"directed"},{name:"undirectedEdges",type:"undirected"}];function et(t,e,n,i){var o=!1;for(var r in e)if(r!==i){var s=e[r];if(o=n(s.key,s.attributes,s.source.key,s.target.key,s.source.attributes,s.target.attributes,s.undirected),t&&o)return s.key}}function nt(t,e,n,i){var o,r,s,a=!1;for(var l in e)if(l!==i){o=e[l];do{if(r=o.source,s=o.target,a=n(o.key,o.attributes,r.key,s.key,r.attributes,s.attributes,o.undirected),t&&a)return o.key;o=o.next}while(void 0!==o)}}function it(t,e){var n,i=Object.keys(t),o=i.length,r=0;return new N((function(){do{if(n)n=n.next;else{if(r>=o)return{done:!0};var s=i[r++];if(s===e){n=void 0;continue}n=t[s]}}while(!n);return{done:!1,value:{edge:n.key,attributes:n.attributes,source:n.source.key,target:n.target.key,sourceAttributes:n.source.attributes,targetAttributes:n.target.attributes,undirected:n.undirected}}}))}function ot(t,e,n,i){var o=e[n];if(o){var r=o.source,s=o.target;return i(o.key,o.attributes,r.key,s.key,r.attributes,s.attributes,o.undirected)&&t?o.key:void 0}}function rt(t,e,n,i){var o=e[n];if(o){var r=!1;do{if(r=i(o.key,o.attributes,o.source.key,o.target.key,o.source.attributes,o.target.attributes,o.undirected),t&&r)return o.key;o=o.next}while(void 0!==o)}}function st(t,e){var n=t[e];return void 0!==n.next?new N((function(){if(!n)return{done:!0};var t={edge:n.key,attributes:n.attributes,source:n.source.key,target:n.target.key,sourceAttributes:n.source.attributes,targetAttributes:n.target.attributes,undirected:n.undirected};return n=n.next,{done:!1,value:t}})):N.of({edge:n.key,attributes:n.attributes,source:n.source.key,target:n.target.key,sourceAttributes:n.source.attributes,targetAttributes:n.target.attributes,undirected:n.undirected})}function at(t,e,n,i){if(0!==e.size)for(var o,r,s="mixed"!==n&&n!==e.type,a="undirected"===n,l=!1,c=e._edges.values();!0!==(o=c.next()).done;)if(r=o.value,!s||r.undirected===a){var h=r,u=h.key,d=h.attributes,p=h.source,m=h.target;if(l=i(u,d,p.key,m.key,p.attributes,m.attributes,r.undirected),t&&l)return u}}function lt(t,e,n,i,o,r){var s,a=e?nt:et;if("undirected"!==n){if("out"!==i&&(s=a(t,o.in,r),t&&s))return s;if("in"!==i&&(s=a(t,o.out,r,i?void 0:o.key),t&&s))return s}if("directed"!==n&&(s=a(t,o.undirected,r),t&&s))return s}function ct(t,e,n,i,o,r,s){var a,l=n?rt:ot;if("undirected"!==e){if(void 0!==o.in&&"out"!==i&&(a=l(t,o.in,r,s),t&&a))return a;if(void 0!==o.out&&"in"!==i&&(i||o.key!==r)&&(a=l(t,o.out,r,s),t&&a))return a}if("directed"!==e&&void 0!==o.undirected&&(a=l(t,o.undirected,r,s),t&&a))return a}var ht=[{name:"neighbors",type:"mixed"},{name:"inNeighbors",type:"directed",direction:"in"},{name:"outNeighbors",type:"directed",direction:"out"},{name:"inboundNeighbors",type:"mixed",direction:"in"},{name:"outboundNeighbors",type:"mixed",direction:"out"},{name:"directedNeighbors",type:"directed"},{name:"undirectedNeighbors",type:"undirected"}];function ut(){this.A=null,this.B=null}function dt(t,e,n,i,o){for(var r in i){var s=i[r],a=s.source,l=s.target,c=a===n?l:a;if(!e||!e.has(c.key)){var h=o(c.key,c.attributes);if(t&&h)return c.key}}}function pt(t,e,n,i,o){if("mixed"!==e){if("undirected"===e)return dt(t,null,i,i.undirected,o);if("string"==typeof n)return dt(t,null,i,i[n],o)}var r,s=new ut;if("undirected"!==e){if("out"!==n){if(r=dt(t,null,i,i.in,o),t&&r)return r;s.wrap(i.in)}if("in"!==n){if(r=dt(t,s,i,i.out,o),t&&r)return r;s.wrap(i.out)}}if("directed"!==e&&(r=dt(t,s,i,i.undirected,o),t&&r))return r}function mt(t,e,n){var i=Object.keys(n),o=i.length,r=0;return new N((function(){var s=null;do{if(r>=o)return t&&t.wrap(n),{done:!0};var a=n[i[r++]],l=a.source,c=a.target;s=l===e?c:l,t&&t.has(s.key)&&(s=null)}while(null===s);return{done:!1,value:{neighbor:s.key,attributes:s.attributes}}}))}function ft(t,e,n,i,o){for(var r,s,a,l,c,h,u,d=i._nodes.values(),p=i.type;!0!==(r=d.next()).done;){var m=!1;if(s=r.value,"undirected"!==p)for(a in l=s.out){c=l[a];do{if(h=c.target,m=!0,u=o(s.key,h.key,s.attributes,h.attributes,c.key,c.attributes,c.undirected),t&&u)return c;c=c.next}while(c)}if("directed"!==p)for(a in l=s.undirected)if(!(e&&s.key>a)){c=l[a];do{if((h=c.target).key!==a&&(h=c.source),m=!0,u=o(s.key,h.key,s.attributes,h.attributes,c.key,c.attributes,c.undirected),t&&u)return c;c=c.next}while(c)}if(n&&!m&&(u=o(s.key,null,s.attributes,null,null,null,null),t&&u))return null}}function gt(t){if(!c(t))throw new B('Graph.import: invalid serialized node. A serialized node should be a plain object with at least a "key" property.');if(!("key"in t))throw new B("Graph.import: serialized node is missing its key.");if("attributes"in t&&(!c(t.attributes)||null===t.attributes))throw new B("Graph.import: invalid attributes. Attributes should be a plain object, null or omitted.")}function yt(t){if(!c(t))throw new B('Graph.import: invalid serialized edge. A serialized edge should be a plain object with at least a "source" & "target" property.');if(!("source"in t))throw new B("Graph.import: serialized edge is missing its source.");if(!("target"in t))throw new B("Graph.import: serialized edge is missing its target.");if("attributes"in t&&(!c(t.attributes)||null===t.attributes))throw new B("Graph.import: invalid attributes. Attributes should be a plain object, null or omitted.");if("undirected"in t&&"boolean"!=typeof t.undirected)throw new B("Graph.import: invalid undirectedness information. Undirected should be boolean or omitted.")}ut.prototype.wrap=function(t){null===this.A?this.A=t:null===this.B&&(this.B=t)},ut.prototype.has=function(t){return null!==this.A&&t in this.A||null!==this.B&&t in this.B};var bt,vt=(bt=255&Math.floor(256*Math.random()),function(){return bt++}),wt=new Set(["directed","undirected","mixed"]),Ct=new Set(["domain","_events","_eventsCount","_maxListeners"]),At={allowSelfLoops:!0,multi:!1,type:"mixed"};function St(t,e,n){var i=new t.NodeDataClass(e,n);return t._nodes.set(e,i),t.emit("nodeAdded",{key:e,attributes:n}),i}function xt(t,e,n,i,o,r,s,a){if(!i&&"undirected"===t.type)throw new W("Graph.".concat(e,": you cannot add a directed edge to an undirected graph. Use the #.addEdge or #.addUndirectedEdge instead."));if(i&&"directed"===t.type)throw new W("Graph.".concat(e,": you cannot add an undirected edge to a directed graph. Use the #.addEdge or #.addDirectedEdge instead."));if(a&&!c(a))throw new B("Graph.".concat(e,': invalid attributes. Expecting an object but got "').concat(a,'"'));if(r=""+r,s=""+s,a=a||{},!t.allowSelfLoops&&r===s)throw new W("Graph.".concat(e,': source & target are the same ("').concat(r,"\"), thus creating a loop explicitly forbidden by this graph 'allowSelfLoops' option set to false."));var l=t._nodes.get(r),h=t._nodes.get(s);if(!l)throw new V("Graph.".concat(e,': source node "').concat(r,'" not found.'));if(!h)throw new V("Graph.".concat(e,': target node "').concat(s,'" not found.'));var u={key:null,undirected:i,source:r,target:s,attributes:a};if(n)o=t._edgeKeyGenerator();else if(o=""+o,t._edges.has(o))throw new W("Graph.".concat(e,': the "').concat(o,'" edge already exists in the graph.'));if(!t.multi&&(i?void 0!==l.undirected[s]:void 0!==l.out[s]))throw new W("Graph.".concat(e,': an edge linking "').concat(r,'" to "').concat(s,"\" already exists. If you really want to add multiple edges linking those nodes, you should create a multi graph by using the 'multi' option."));var d=new z(i,o,l,h,a);t._edges.set(o,d);var p=r===s;return i?(l.undirectedDegree++,h.undirectedDegree++,p&&(l.undirectedLoops++,t._undirectedSelfLoopCount++)):(l.outDegree++,h.inDegree++,p&&(l.directedLoops++,t._directedSelfLoopCount++)),t.multi?d.attachMulti():d.attach(),i?t._undirectedSize++:t._directedSize++,u.key=o,t.emit("edgeAdded",u),o}function Et(t,e,n,i,o,r,s,l,h){if(!i&&"undirected"===t.type)throw new W("Graph.".concat(e,": you cannot merge/update a directed edge to an undirected graph. Use the #.mergeEdge/#.updateEdge or #.addUndirectedEdge instead."));if(i&&"directed"===t.type)throw new W("Graph.".concat(e,": you cannot merge/update an undirected edge to a directed graph. Use the #.mergeEdge/#.updateEdge or #.addDirectedEdge instead."));if(l)if(h){if("function"!=typeof l)throw new B("Graph.".concat(e,': invalid updater function. Expecting a function but got "').concat(l,'"'))}else if(!c(l))throw new B("Graph.".concat(e,': invalid attributes. Expecting an object but got "').concat(l,'"'));var u;if(r=""+r,s=""+s,h&&(u=l,l=void 0),!t.allowSelfLoops&&r===s)throw new W("Graph.".concat(e,': source & target are the same ("').concat(r,"\"), thus creating a loop explicitly forbidden by this graph 'allowSelfLoops' option set to false."));var d,p,m=t._nodes.get(r),f=t._nodes.get(s);if(!n&&(d=t._edges.get(o))){if(!(d.source.key===r&&d.target.key===s||i&&d.source.key===s&&d.target.key===r))throw new W("Graph.".concat(e,': inconsistency detected when attempting to merge the "').concat(o,'" edge with "').concat(r,'" source & "').concat(s,'" target vs. ("').concat(d.source.key,'", "').concat(d.target.key,'").'));p=d}if(p||t.multi||!m||(p=i?m.undirected[s]:m.out[s]),p){var g=[p.key,!1,!1,!1];if(h?!u:!l)return g;if(h){var y=p.attributes;p.attributes=u(y),t.emit("edgeAttributesUpdated",{type:"replace",key:p.key,attributes:p.attributes})}else a(p.attributes,l),t.emit("edgeAttributesUpdated",{type:"merge",key:p.key,attributes:p.attributes,data:l});return g}l=l||{},h&&u&&(l=u(l));var b={key:null,undirected:i,source:r,target:s,attributes:l};if(n)o=t._edgeKeyGenerator();else if(o=""+o,t._edges.has(o))throw new W("Graph.".concat(e,': the "').concat(o,'" edge already exists in the graph.'));var v=!1,w=!1;m||(m=St(t,r,{}),v=!0,r===s&&(f=m,w=!0)),f||(f=St(t,s,{}),w=!0),d=new z(i,o,m,f,l),t._edges.set(o,d);var C=r===s;return i?(m.undirectedDegree++,f.undirectedDegree++,C&&(m.undirectedLoops++,t._undirectedSelfLoopCount++)):(m.outDegree++,f.inDegree++,C&&(m.directedLoops++,t._directedSelfLoopCount++)),t.multi?d.attachMulti():d.attach(),i?t._undirectedSize++:t._directedSize++,b.key=o,t.emit("edgeAdded",b),[o,!0,v,w]}function Tt(t,e){t._edges.delete(e.key);var n=e.source,i=e.target,o=e.attributes,r=e.undirected,s=n===i;r?(n.undirectedDegree--,i.undirectedDegree--,s&&(n.undirectedLoops--,t._undirectedSelfLoopCount--)):(n.outDegree--,i.inDegree--,s&&(n.directedLoops--,t._directedSelfLoopCount--)),t.multi?e.detachMulti():e.detach(),r?t._undirectedSize--:t._directedSize--,t.emit("edgeDropped",{key:e.key,attributes:o,source:n.key,target:i.key,undirected:r})}var _t=function(n){function i(t){var e;if(e=n.call(this)||this,"boolean"!=typeof(t=a({},At,t)).multi)throw new B("Graph.constructor: invalid 'multi' option. Expecting a boolean but got \"".concat(t.multi,'".'));if(!wt.has(t.type))throw new B('Graph.constructor: invalid \'type\' option. Should be one of "mixed", "directed" or "undirected" but got "'.concat(t.type,'".'));if("boolean"!=typeof t.allowSelfLoops)throw new B("Graph.constructor: invalid 'allowSelfLoops' option. Expecting a boolean but got \"".concat(t.allowSelfLoops,'".'));var i="mixed"===t.type?U:"directed"===t.type?j:q;u(s(e),"NodeDataClass",i);var o="geid_"+vt()+"_",r=0;return u(s(e),"_attributes",{}),u(s(e),"_nodes",new Map),u(s(e),"_edges",new Map),u(s(e),"_directedSize",0),u(s(e),"_undirectedSize",0),u(s(e),"_directedSelfLoopCount",0),u(s(e),"_undirectedSelfLoopCount",0),u(s(e),"_edgeKeyGenerator",(function(){var t;do{t=o+r++}while(e._edges.has(t));return t})),u(s(e),"_options",t),Ct.forEach((function(t){return u(s(e),t,e[t])})),d(s(e),"order",(function(){return e._nodes.size})),d(s(e),"size",(function(){return e._edges.size})),d(s(e),"directedSize",(function(){return e._directedSize})),d(s(e),"undirectedSize",(function(){return e._undirectedSize})),d(s(e),"selfLoopCount",(function(){return e._directedSelfLoopCount+e._undirectedSelfLoopCount})),d(s(e),"directedSelfLoopCount",(function(){return e._directedSelfLoopCount})),d(s(e),"undirectedSelfLoopCount",(function(){return e._undirectedSelfLoopCount})),d(s(e),"multi",e._options.multi),d(s(e),"type",e._options.type),d(s(e),"allowSelfLoops",e._options.allowSelfLoops),d(s(e),"implementation",(function(){return"graphology"})),e}e(i,n);var o=i.prototype;return o._resetInstanceCounters=function(){this._directedSize=0,this._undirectedSize=0,this._directedSelfLoopCount=0,this._undirectedSelfLoopCount=0},o.hasNode=function(t){return this._nodes.has(""+t)},o.hasDirectedEdge=function(t,e){if("undirected"===this.type)return!1;if(1===arguments.length){var n=""+t,i=this._edges.get(n);return!!i&&!i.undirected}if(2===arguments.length){t=""+t,e=""+e;var o=this._nodes.get(t);return!!o&&o.out.hasOwnProperty(e)}throw new B("Graph.hasDirectedEdge: invalid arity (".concat(arguments.length,", instead of 1 or 2). You can either ask for an edge id or for the existence of an edge between a source & a target."))},o.hasUndirectedEdge=function(t,e){if("directed"===this.type)return!1;if(1===arguments.length){var n=""+t,i=this._edges.get(n);return!!i&&i.undirected}if(2===arguments.length){t=""+t,e=""+e;var o=this._nodes.get(t);return!!o&&o.undirected.hasOwnProperty(e)}throw new B("Graph.hasDirectedEdge: invalid arity (".concat(arguments.length,", instead of 1 or 2). You can either ask for an edge id or for the existence of an edge between a source & a target."))},o.hasEdge=function(t,e){if(1===arguments.length){var n=""+t;return this._edges.has(n)}if(2===arguments.length){t=""+t,e=""+e;var i=this._nodes.get(t);return!!i&&(void 0!==i.out&&i.out.hasOwnProperty(e)||void 0!==i.undirected&&i.undirected.hasOwnProperty(e))}throw new B("Graph.hasEdge: invalid arity (".concat(arguments.length,", instead of 1 or 2). You can either ask for an edge id or for the existence of an edge between a source & a target."))},o.directedEdge=function(t,e){if("undirected"!==this.type){if(t=""+t,e=""+e,this.multi)throw new W("Graph.directedEdge: this method is irrelevant with multigraphs since there might be multiple edges between source & target. See #.directedEdges instead.");var n=this._nodes.get(t);if(!n)throw new V('Graph.directedEdge: could not find the "'.concat(t,'" source node in the graph.'));if(!this._nodes.has(e))throw new V('Graph.directedEdge: could not find the "'.concat(e,'" target node in the graph.'));var i=n.out&&n.out[e]||void 0;return i?i.key:void 0}},o.undirectedEdge=function(t,e){if("directed"!==this.type){if(t=""+t,e=""+e,this.multi)throw new W("Graph.undirectedEdge: this method is irrelevant with multigraphs since there might be multiple edges between source & target. See #.undirectedEdges instead.");var n=this._nodes.get(t);if(!n)throw new V('Graph.undirectedEdge: could not find the "'.concat(t,'" source node in the graph.'));if(!this._nodes.has(e))throw new V('Graph.undirectedEdge: could not find the "'.concat(e,'" target node in the graph.'));var i=n.undirected&&n.undirected[e]||void 0;return i?i.key:void 0}},o.edge=function(t,e){if(this.multi)throw new W("Graph.edge: this method is irrelevant with multigraphs since there might be multiple edges between source & target. See #.edges instead.");t=""+t,e=""+e;var n=this._nodes.get(t);if(!n)throw new V('Graph.edge: could not find the "'.concat(t,'" source node in the graph.'));if(!this._nodes.has(e))throw new V('Graph.edge: could not find the "'.concat(e,'" target node in the graph.'));var i=n.out&&n.out[e]||n.undirected&&n.undirected[e]||void 0;if(i)return i.key},o.areDirectedNeighbors=function(t,e){t=""+t,e=""+e;var n=this._nodes.get(t);if(!n)throw new V('Graph.areDirectedNeighbors: could not find the "'.concat(t,'" node in the graph.'));return"undirected"!==this.type&&(e in n.in||e in n.out)},o.areOutNeighbors=function(t,e){t=""+t,e=""+e;var n=this._nodes.get(t);if(!n)throw new V('Graph.areOutNeighbors: could not find the "'.concat(t,'" node in the graph.'));return"undirected"!==this.type&&e in n.out},o.areInNeighbors=function(t,e){t=""+t,e=""+e;var n=this._nodes.get(t);if(!n)throw new V('Graph.areInNeighbors: could not find the "'.concat(t,'" node in the graph.'));return"undirected"!==this.type&&e in n.in},o.areUndirectedNeighbors=function(t,e){t=""+t,e=""+e;var n=this._nodes.get(t);if(!n)throw new V('Graph.areUndirectedNeighbors: could not find the "'.concat(t,'" node in the graph.'));return"directed"!==this.type&&e in n.undirected},o.areNeighbors=function(t,e){t=""+t,e=""+e;var n=this._nodes.get(t);if(!n)throw new V('Graph.areNeighbors: could not find the "'.concat(t,'" node in the graph.'));return"undirected"!==this.type&&(e in n.in||e in n.out)||"directed"!==this.type&&e in n.undirected},o.areInboundNeighbors=function(t,e){t=""+t,e=""+e;var n=this._nodes.get(t);if(!n)throw new V('Graph.areInboundNeighbors: could not find the "'.concat(t,'" node in the graph.'));return"undirected"!==this.type&&e in n.in||"directed"!==this.type&&e in n.undirected},o.areOutboundNeighbors=function(t,e){t=""+t,e=""+e;var n=this._nodes.get(t);if(!n)throw new V('Graph.areOutboundNeighbors: could not find the "'.concat(t,'" node in the graph.'));return"undirected"!==this.type&&e in n.out||"directed"!==this.type&&e in n.undirected},o.inDegree=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.inDegree: could not find the "'.concat(t,'" node in the graph.'));return"undirected"===this.type?0:e.inDegree},o.outDegree=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.outDegree: could not find the "'.concat(t,'" node in the graph.'));return"undirected"===this.type?0:e.outDegree},o.directedDegree=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.directedDegree: could not find the "'.concat(t,'" node in the graph.'));return"undirected"===this.type?0:e.inDegree+e.outDegree},o.undirectedDegree=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.undirectedDegree: could not find the "'.concat(t,'" node in the graph.'));return"directed"===this.type?0:e.undirectedDegree},o.inboundDegree=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.inboundDegree: could not find the "'.concat(t,'" node in the graph.'));var n=0;return"directed"!==this.type&&(n+=e.undirectedDegree),"undirected"!==this.type&&(n+=e.inDegree),n},o.outboundDegree=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.outboundDegree: could not find the "'.concat(t,'" node in the graph.'));var n=0;return"directed"!==this.type&&(n+=e.undirectedDegree),"undirected"!==this.type&&(n+=e.outDegree),n},o.degree=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.degree: could not find the "'.concat(t,'" node in the graph.'));var n=0;return"directed"!==this.type&&(n+=e.undirectedDegree),"undirected"!==this.type&&(n+=e.inDegree+e.outDegree),n},o.inDegreeWithoutSelfLoops=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.inDegreeWithoutSelfLoops: could not find the "'.concat(t,'" node in the graph.'));return"undirected"===this.type?0:e.inDegree-e.directedLoops},o.outDegreeWithoutSelfLoops=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.outDegreeWithoutSelfLoops: could not find the "'.concat(t,'" node in the graph.'));return"undirected"===this.type?0:e.outDegree-e.directedLoops},o.directedDegreeWithoutSelfLoops=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.directedDegreeWithoutSelfLoops: could not find the "'.concat(t,'" node in the graph.'));return"undirected"===this.type?0:e.inDegree+e.outDegree-2*e.directedLoops},o.undirectedDegreeWithoutSelfLoops=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.undirectedDegreeWithoutSelfLoops: could not find the "'.concat(t,'" node in the graph.'));return"directed"===this.type?0:e.undirectedDegree-2*e.undirectedLoops},o.inboundDegreeWithoutSelfLoops=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.inboundDegreeWithoutSelfLoops: could not find the "'.concat(t,'" node in the graph.'));var n=0,i=0;return"directed"!==this.type&&(n+=e.undirectedDegree,i+=2*e.undirectedLoops),"undirected"!==this.type&&(n+=e.inDegree,i+=e.directedLoops),n-i},o.outboundDegreeWithoutSelfLoops=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.outboundDegreeWithoutSelfLoops: could not find the "'.concat(t,'" node in the graph.'));var n=0,i=0;return"directed"!==this.type&&(n+=e.undirectedDegree,i+=2*e.undirectedLoops),"undirected"!==this.type&&(n+=e.outDegree,i+=e.directedLoops),n-i},o.degreeWithoutSelfLoops=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.degreeWithoutSelfLoops: could not find the "'.concat(t,'" node in the graph.'));var n=0,i=0;return"directed"!==this.type&&(n+=e.undirectedDegree,i+=2*e.undirectedLoops),"undirected"!==this.type&&(n+=e.inDegree+e.outDegree,i+=2*e.directedLoops),n-i},o.source=function(t){t=""+t;var e=this._edges.get(t);if(!e)throw new V('Graph.source: could not find the "'.concat(t,'" edge in the graph.'));return e.source.key},o.target=function(t){t=""+t;var e=this._edges.get(t);if(!e)throw new V('Graph.target: could not find the "'.concat(t,'" edge in the graph.'));return e.target.key},o.extremities=function(t){t=""+t;var e=this._edges.get(t);if(!e)throw new V('Graph.extremities: could not find the "'.concat(t,'" edge in the graph.'));return[e.source.key,e.target.key]},o.opposite=function(t,e){t=""+t,e=""+e;var n=this._edges.get(e);if(!n)throw new V('Graph.opposite: could not find the "'.concat(e,'" edge in the graph.'));var i=n.source.key,o=n.target.key;if(t===i)return o;if(t===o)return i;throw new V('Graph.opposite: the "'.concat(t,'" node is not attached to the "').concat(e,'" edge (').concat(i,", ").concat(o,")."))},o.hasExtremity=function(t,e){t=""+t,e=""+e;var n=this._edges.get(t);if(!n)throw new V('Graph.hasExtremity: could not find the "'.concat(t,'" edge in the graph.'));return n.source.key===e||n.target.key===e},o.isUndirected=function(t){t=""+t;var e=this._edges.get(t);if(!e)throw new V('Graph.isUndirected: could not find the "'.concat(t,'" edge in the graph.'));return e.undirected},o.isDirected=function(t){t=""+t;var e=this._edges.get(t);if(!e)throw new V('Graph.isDirected: could not find the "'.concat(t,'" edge in the graph.'));return!e.undirected},o.isSelfLoop=function(t){t=""+t;var e=this._edges.get(t);if(!e)throw new V('Graph.isSelfLoop: could not find the "'.concat(t,'" edge in the graph.'));return e.source===e.target},o.addNode=function(t,e){var n=function(t,e,n){if(n&&!c(n))throw new B('Graph.addNode: invalid attributes. Expecting an object but got "'.concat(n,'"'));if(e=""+e,n=n||{},t._nodes.has(e))throw new W('Graph.addNode: the "'.concat(e,'" node already exist in the graph.'));var i=new t.NodeDataClass(e,n);return t._nodes.set(e,i),t.emit("nodeAdded",{key:e,attributes:n}),i}(this,t,e);return n.key},o.mergeNode=function(t,e){if(e&&!c(e))throw new B('Graph.mergeNode: invalid attributes. Expecting an object but got "'.concat(e,'"'));t=""+t,e=e||{};var n=this._nodes.get(t);return n?(e&&(a(n.attributes,e),this.emit("nodeAttributesUpdated",{type:"merge",key:t,attributes:n.attributes,data:e})),[t,!1]):(n=new this.NodeDataClass(t,e),this._nodes.set(t,n),this.emit("nodeAdded",{key:t,attributes:e}),[t,!0])},o.updateNode=function(t,e){if(e&&"function"!=typeof e)throw new B('Graph.updateNode: invalid updater function. Expecting a function but got "'.concat(e,'"'));t=""+t;var n=this._nodes.get(t);if(n){if(e){var i=n.attributes;n.attributes=e(i),this.emit("nodeAttributesUpdated",{type:"replace",key:t,attributes:n.attributes})}return[t,!1]}var o=e?e({}):{};return n=new this.NodeDataClass(t,o),this._nodes.set(t,n),this.emit("nodeAdded",{key:t,attributes:o}),[t,!0]},o.dropNode=function(t){t=""+t;var e,n=this._nodes.get(t);if(!n)throw new V('Graph.dropNode: could not find the "'.concat(t,'" node in the graph.'));if("undirected"!==this.type){for(var i in n.out){e=n.out[i];do{Tt(this,e),e=e.next}while(e)}for(var o in n.in){e=n.in[o];do{Tt(this,e),e=e.next}while(e)}}if("directed"!==this.type)for(var r in n.undirected){e=n.undirected[r];do{Tt(this,e),e=e.next}while(e)}this._nodes.delete(t),this.emit("nodeDropped",{key:t,attributes:n.attributes})},o.dropEdge=function(t){var e;if(arguments.length>1){var n=""+arguments[0],i=""+arguments[1];if(!(e=l(this,n,i,this.type)))throw new V('Graph.dropEdge: could not find the "'.concat(n,'" -> "').concat(i,'" edge in the graph.'))}else if(t=""+t,!(e=this._edges.get(t)))throw new V('Graph.dropEdge: could not find the "'.concat(t,'" edge in the graph.'));return Tt(this,e),this},o.dropDirectedEdge=function(t,e){if(arguments.length<2)throw new W("Graph.dropDirectedEdge: it does not make sense to try and drop a directed edge by key. What if the edge with this key is undirected? Use #.dropEdge for this purpose instead.");if(this.multi)throw new W("Graph.dropDirectedEdge: cannot use a {source,target} combo when dropping an edge in a MultiGraph since we cannot infer the one you want to delete as there could be multiple ones.");var n=l(this,t=""+t,e=""+e,"directed");if(!n)throw new V('Graph.dropDirectedEdge: could not find a "'.concat(t,'" -> "').concat(e,'" edge in the graph.'));return Tt(this,n),this},o.dropUndirectedEdge=function(t,e){if(arguments.length<2)throw new W("Graph.dropUndirectedEdge: it does not make sense to drop a directed edge by key. What if the edge with this key is undirected? Use #.dropEdge for this purpose instead.");if(this.multi)throw new W("Graph.dropUndirectedEdge: cannot use a {source,target} combo when dropping an edge in a MultiGraph since we cannot infer the one you want to delete as there could be multiple ones.");var n=l(this,t,e,"undirected");if(!n)throw new V('Graph.dropUndirectedEdge: could not find a "'.concat(t,'" -> "').concat(e,'" edge in the graph.'));return Tt(this,n),this},o.clear=function(){this._edges.clear(),this._nodes.clear(),this._resetInstanceCounters(),this.emit("cleared")},o.clearEdges=function(){for(var t,e=this._nodes.values();!0!==(t=e.next()).done;)t.value.clear();this._edges.clear(),this._resetInstanceCounters(),this.emit("edgesCleared")},o.getAttribute=function(t){return this._attributes[t]},o.getAttributes=function(){return this._attributes},o.hasAttribute=function(t){return this._attributes.hasOwnProperty(t)},o.setAttribute=function(t,e){return this._attributes[t]=e,this.emit("attributesUpdated",{type:"set",attributes:this._attributes,name:t}),this},o.updateAttribute=function(t,e){if("function"!=typeof e)throw new B("Graph.updateAttribute: updater should be a function.");var n=this._attributes[t];return this._attributes[t]=e(n),this.emit("attributesUpdated",{type:"set",attributes:this._attributes,name:t}),this},o.removeAttribute=function(t){return delete this._attributes[t],this.emit("attributesUpdated",{type:"remove",attributes:this._attributes,name:t}),this},o.replaceAttributes=function(t){if(!c(t))throw new B("Graph.replaceAttributes: provided attributes are not a plain object.");return this._attributes=t,this.emit("attributesUpdated",{type:"replace",attributes:this._attributes}),this},o.mergeAttributes=function(t){if(!c(t))throw new B("Graph.mergeAttributes: provided attributes are not a plain object.");return a(this._attributes,t),this.emit("attributesUpdated",{type:"merge",attributes:this._attributes,data:t}),this},o.updateAttributes=function(t){if("function"!=typeof t)throw new B("Graph.updateAttributes: provided updater is not a function.");return this._attributes=t(this._attributes),this.emit("attributesUpdated",{type:"update",attributes:this._attributes}),this},o.updateEachNodeAttributes=function(t,e){if("function"!=typeof t)throw new B("Graph.updateEachNodeAttributes: expecting an updater function.");if(e&&!p(e))throw new B("Graph.updateEachNodeAttributes: invalid hints. Expecting an object having the following shape: {attributes?: [string]}");for(var n,i,o=this._nodes.values();!0!==(n=o.next()).done;)(i=n.value).attributes=t(i.key,i.attributes);this.emit("eachNodeAttributesUpdated",{hints:e||null})},o.updateEachEdgeAttributes=function(t,e){if("function"!=typeof t)throw new B("Graph.updateEachEdgeAttributes: expecting an updater function.");if(e&&!p(e))throw new B("Graph.updateEachEdgeAttributes: invalid hints. Expecting an object having the following shape: {attributes?: [string]}");for(var n,i,o,r,s=this._edges.values();!0!==(n=s.next()).done;)o=(i=n.value).source,r=i.target,i.attributes=t(i.key,i.attributes,o.key,r.key,o.attributes,r.attributes,i.undirected);this.emit("eachEdgeAttributesUpdated",{hints:e||null})},o.forEachAdjacencyEntry=function(t){if("function"!=typeof t)throw new B("Graph.forEachAdjacencyEntry: expecting a callback.");ft(!1,!1,!1,this,t)},o.forEachAdjacencyEntryWithOrphans=function(t){if("function"!=typeof t)throw new B("Graph.forEachAdjacencyEntryWithOrphans: expecting a callback.");ft(!1,!1,!0,this,t)},o.forEachAssymetricAdjacencyEntry=function(t){if("function"!=typeof t)throw new B("Graph.forEachAssymetricAdjacencyEntry: expecting a callback.");ft(!1,!0,!1,this,t)},o.forEachAssymetricAdjacencyEntryWithOrphans=function(t){if("function"!=typeof t)throw new B("Graph.forEachAssymetricAdjacencyEntryWithOrphans: expecting a callback.");ft(!1,!0,!0,this,t)},o.nodes=function(){return"function"==typeof Array.from?Array.from(this._nodes.keys()):F(this._nodes.keys(),this._nodes.size)},o.forEachNode=function(t){if("function"!=typeof t)throw new B("Graph.forEachNode: expecting a callback.");for(var e,n,i=this._nodes.values();!0!==(e=i.next()).done;)t((n=e.value).key,n.attributes)},o.findNode=function(t){if("function"!=typeof t)throw new B("Graph.findNode: expecting a callback.");for(var e,n,i=this._nodes.values();!0!==(e=i.next()).done;)if(t((n=e.value).key,n.attributes))return n.key},o.mapNodes=function(t){if("function"!=typeof t)throw new B("Graph.mapNode: expecting a callback.");for(var e,n,i=this._nodes.values(),o=new Array(this.order),r=0;!0!==(e=i.next()).done;)n=e.value,o[r++]=t(n.key,n.attributes);return o},o.someNode=function(t){if("function"!=typeof t)throw new B("Graph.someNode: expecting a callback.");for(var e,n,i=this._nodes.values();!0!==(e=i.next()).done;)if(t((n=e.value).key,n.attributes))return!0;return!1},o.everyNode=function(t){if("function"!=typeof t)throw new B("Graph.everyNode: expecting a callback.");for(var e,n,i=this._nodes.values();!0!==(e=i.next()).done;)if(!t((n=e.value).key,n.attributes))return!1;return!0},o.filterNodes=function(t){if("function"!=typeof t)throw new B("Graph.filterNodes: expecting a callback.");for(var e,n,i=this._nodes.values(),o=[];!0!==(e=i.next()).done;)t((n=e.value).key,n.attributes)&&o.push(n.key);return o},o.reduceNodes=function(t,e){if("function"!=typeof t)throw new B("Graph.reduceNodes: expecting a callback.");if(arguments.length<2)throw new B("Graph.reduceNodes: missing initial value. You must provide it because the callback takes more than one argument and we cannot infer the initial value from the first iteration, as you could with a simple array.");for(var n,i,o=e,r=this._nodes.values();!0!==(n=r.next()).done;)o=t(o,(i=n.value).key,i.attributes);return o},o.nodeEntries=function(){var t=this._nodes.values();return new N((function(){var e=t.next();if(e.done)return e;var n=e.value;return{value:{node:n.key,attributes:n.attributes},done:!1}}))},o.export=function(){var t=this,e=new Array(this._nodes.size),n=0;this._nodes.forEach((function(t,i){e[n++]=function(t,e){var n={key:t};return h(e.attributes)||(n.attributes=a({},e.attributes)),n}(i,t)}));var i=new Array(this._edges.size);return n=0,this._edges.forEach((function(e,o){i[n++]=function(t,e,n){var i={key:e,source:n.source.key,target:n.target.key};return h(n.attributes)||(i.attributes=a({},n.attributes)),"mixed"===t&&n.undirected&&(i.undirected=!0),i}(t.type,o,e)})),{options:{type:this.type,multi:this.multi,allowSelfLoops:this.allowSelfLoops},attributes:this.getAttributes(),nodes:e,edges:i}},o.import=function(t){var e,n,o,r,s,a=this,l=arguments.length>1&&void 0!==arguments[1]&&arguments[1];if(t instanceof i)return t.forEachNode((function(t,e){l?a.mergeNode(t,e):a.addNode(t,e)})),t.forEachEdge((function(t,e,n,i,o,r,s){l?s?a.mergeUndirectedEdgeWithKey(t,n,i,e):a.mergeDirectedEdgeWithKey(t,n,i,e):s?a.addUndirectedEdgeWithKey(t,n,i,e):a.addDirectedEdgeWithKey(t,n,i,e)})),this;if(!c(t))throw new B("Graph.import: invalid argument. Expecting a serialized graph or, alternatively, a Graph instance.");if(t.attributes){if(!c(t.attributes))throw new B("Graph.import: invalid attributes. Expecting a plain object.");l?this.mergeAttributes(t.attributes):this.replaceAttributes(t.attributes)}if(t.nodes){if(o=t.nodes,!Array.isArray(o))throw new B("Graph.import: invalid nodes. Expecting an array.");for(e=0,n=o.length;e<n;e++){gt(r=o[e]);var h=r,u=h.key,d=h.attributes;l?this.mergeNode(u,d):this.addNode(u,d)}}if(t.edges){var p=!1;if("undirected"===this.type&&(p=!0),o=t.edges,!Array.isArray(o))throw new B("Graph.import: invalid edges. Expecting an array.");for(e=0,n=o.length;e<n;e++){yt(s=o[e]);var m=s,f=m.source,g=m.target,y=m.attributes,b=m.undirected,v=void 0===b?p:b;"key"in s?(l?v?this.mergeUndirectedEdgeWithKey:this.mergeDirectedEdgeWithKey:v?this.addUndirectedEdgeWithKey:this.addDirectedEdgeWithKey).call(this,s.key,f,g,y):(l?v?this.mergeUndirectedEdge:this.mergeDirectedEdge:v?this.addUndirectedEdge:this.addDirectedEdge).call(this,f,g,y)}}return this},o.nullCopy=function(t){var e=new i(a({},this._options,t));return e.replaceAttributes(a({},this.getAttributes())),e},o.emptyCopy=function(t){var e=this.nullCopy(t);return this._nodes.forEach((function(t,n){var i=a({},t.attributes);t=new e.NodeDataClass(n,i),e._nodes.set(n,t)})),e},o.copy=function(t){if("string"==typeof(t=t||{}).type&&t.type!==this.type&&"mixed"!==t.type)throw new W('Graph.copy: cannot create an incompatible copy from "'.concat(this.type,'" type to "').concat(t.type,'" because this would mean losing information about the current graph.'));if("boolean"==typeof t.multi&&t.multi!==this.multi&&!0!==t.multi)throw new W("Graph.copy: cannot create an incompatible copy by downgrading a multi graph to a simple one because this would mean losing information about the current graph.");if("boolean"==typeof t.allowSelfLoops&&t.allowSelfLoops!==this.allowSelfLoops&&!0!==t.allowSelfLoops)throw new W("Graph.copy: cannot create an incompatible copy from a graph allowing self loops to one that does not because this would mean losing information about the current graph.");for(var e,n,i=this.emptyCopy(t),o=this._edges.values();!0!==(e=o.next()).done;)xt(i,"copy",!1,(n=e.value).undirected,n.key,n.source.key,n.target.key,a({},n.attributes));return i},o.toJSON=function(){return this.export()},o.toString=function(){return"[object Graph]"},o.inspect=function(){var e=this,n={};this._nodes.forEach((function(t,e){n[e]=t.attributes}));var i={},o={};this._edges.forEach((function(t,n){var r,s=t.undirected?"--":"->",a="",l=t.source.key,c=t.target.key;t.undirected&&l>c&&(r=l,l=c,c=r);var h="(".concat(l,")").concat(s,"(").concat(c,")");n.startsWith("geid_")?e.multi&&(void 0===o[h]?o[h]=0:o[h]++,a+="".concat(o[h],". ")):a+="[".concat(n,"]: "),i[a+=h]=t.attributes}));var r={};for(var s in this)this.hasOwnProperty(s)&&!Ct.has(s)&&"function"!=typeof this[s]&&"symbol"!==t(s)&&(r[s]=this[s]);return r.attributes=this._attributes,r.nodes=n,r.edges=i,u(r,"constructor",this.constructor),r},i}(f.exports.EventEmitter);"undefined"!=typeof Symbol&&(_t.prototype[Symbol.for("nodejs.util.inspect.custom")]=_t.prototype.inspect),[{name:function(t){return"".concat(t,"Edge")},generateKey:!0},{name:function(t){return"".concat(t,"DirectedEdge")},generateKey:!0,type:"directed"},{name:function(t){return"".concat(t,"UndirectedEdge")},generateKey:!0,type:"undirected"},{name:function(t){return"".concat(t,"EdgeWithKey")}},{name:function(t){return"".concat(t,"DirectedEdgeWithKey")},type:"directed"},{name:function(t){return"".concat(t,"UndirectedEdgeWithKey")},type:"undirected"}].forEach((function(t){["add","merge","update"].forEach((function(e){var n=t.name(e),i="add"===e?xt:Et;t.generateKey?_t.prototype[n]=function(o,r,s){return i(this,n,!0,"undirected"===(t.type||this.type),null,o,r,s,"update"===e)}:_t.prototype[n]=function(o,r,s,a){return i(this,n,!1,"undirected"===(t.type||this.type),o,r,s,a,"update"===e)}}))})),function(t){K.forEach((function(e){var n=e.name,i=e.attacher;i(t,n("Node"),0),i(t,n("Source"),1),i(t,n("Target"),2),i(t,n("Opposite"),3)}))}(_t),function(t){Z.forEach((function(e){var n=e.name,i=e.attacher;i(t,n("Edge"),"mixed"),i(t,n("DirectedEdge"),"directed"),i(t,n("UndirectedEdge"),"undirected")}))}(_t),function(t){tt.forEach((function(e){!function(t,e){var n=e.name,i=e.type,o=e.direction;t.prototype[n]=function(t,e){if("mixed"!==i&&"mixed"!==this.type&&i!==this.type)return[];if(!arguments.length)return function(t,e){if(0===t.size)return[];if("mixed"===e||e===t.type)return"function"==typeof Array.from?Array.from(t._edges.keys()):F(t._edges.keys(),t._edges.size);for(var n,i,o="undirected"===e?t.undirectedSize:t.directedSize,r=new Array(o),s="undirected"===e,a=t._edges.values(),l=0;!0!==(n=a.next()).done;)(i=n.value).undirected===s&&(r[l++]=i.key);return r}(this,i);if(1===arguments.length){t=""+t;var r=this._nodes.get(t);if(void 0===r)throw new V("Graph.".concat(n,': could not find the "').concat(t,'" node in the graph.'));return function(t,e,n,i){var o=[];return lt(!1,t,e,n,i,(function(t){o.push(t)})),o}(this.multi,"mixed"===i?this.type:i,o,r)}if(2===arguments.length){t=""+t,e=""+e;var s=this._nodes.get(t);if(!s)throw new V("Graph.".concat(n,': could not find the "').concat(t,'" source node in the graph.'));if(!this._nodes.has(e))throw new V("Graph.".concat(n,': could not find the "').concat(e,'" target node in the graph.'));return function(t,e,n,i,o){var r=[];return ct(!1,t,e,n,i,o,(function(t){r.push(t)})),r}(i,this.multi,o,s,e)}throw new B("Graph.".concat(n,": too many arguments (expecting 0, 1 or 2 and got ").concat(arguments.length,")."))}}(t,e),function(t,e){var n=e.name,i=e.type,o=e.direction,r="forEach"+n[0].toUpperCase()+n.slice(1,-1);t.prototype[r]=function(t,e,n){if("mixed"===i||"mixed"===this.type||i===this.type){if(1===arguments.length)return at(!1,this,i,n=t);if(2===arguments.length){t=""+t,n=e;var s=this._nodes.get(t);if(void 0===s)throw new V("Graph.".concat(r,': could not find the "').concat(t,'" node in the graph.'));return lt(!1,this.multi,"mixed"===i?this.type:i,o,s,n)}if(3===arguments.length){t=""+t,e=""+e;var a=this._nodes.get(t);if(!a)throw new V("Graph.".concat(r,': could not find the "').concat(t,'" source node in the graph.'));if(!this._nodes.has(e))throw new V("Graph.".concat(r,': could not find the "').concat(e,'" target node in the graph.'));return ct(!1,i,this.multi,o,a,e,n)}throw new B("Graph.".concat(r,": too many arguments (expecting 1, 2 or 3 and got ").concat(arguments.length,")."))}};var s="map"+n[0].toUpperCase()+n.slice(1);t.prototype[s]=function(){var t,e=Array.prototype.slice.call(arguments),n=e.pop();if(0===e.length){var o=0;"directed"!==i&&(o+=this.undirectedSize),"undirected"!==i&&(o+=this.directedSize),t=new Array(o);var s=0;e.push((function(e,i,o,r,a,l,c){t[s++]=n(e,i,o,r,a,l,c)}))}else t=[],e.push((function(e,i,o,r,s,a,l){t.push(n(e,i,o,r,s,a,l))}));return this[r].apply(this,e),t};var a="filter"+n[0].toUpperCase()+n.slice(1);t.prototype[a]=function(){var t=Array.prototype.slice.call(arguments),e=t.pop(),n=[];return t.push((function(t,i,o,r,s,a,l){e(t,i,o,r,s,a,l)&&n.push(t)})),this[r].apply(this,t),n};var l="reduce"+n[0].toUpperCase()+n.slice(1);t.prototype[l]=function(){var t,e,n=Array.prototype.slice.call(arguments);if(n.length<2||n.length>4)throw new B("Graph.".concat(l,": invalid number of arguments (expecting 2, 3 or 4 and got ").concat(n.length,")."));if("function"==typeof n[n.length-1]&&"function"!=typeof n[n.length-2])throw new B("Graph.".concat(l,": missing initial value. You must provide it because the callback takes more than one argument and we cannot infer the initial value from the first iteration, as you could with a simple array."));2===n.length?(t=n[0],e=n[1],n=[]):3===n.length?(t=n[1],e=n[2],n=[n[0]]):4===n.length&&(t=n[2],e=n[3],n=[n[0],n[1]]);var i=e;return n.push((function(e,n,o,r,s,a,l){i=t(i,e,n,o,r,s,a,l)})),this[r].apply(this,n),i}}(t,e),function(t,e){var n=e.name,i=e.type,o=e.direction,r="find"+n[0].toUpperCase()+n.slice(1,-1);t.prototype[r]=function(t,e,n){if("mixed"!==i&&"mixed"!==this.type&&i!==this.type)return!1;if(1===arguments.length)return at(!0,this,i,n=t);if(2===arguments.length){t=""+t,n=e;var s=this._nodes.get(t);if(void 0===s)throw new V("Graph.".concat(r,': could not find the "').concat(t,'" node in the graph.'));return lt(!0,this.multi,"mixed"===i?this.type:i,o,s,n)}if(3===arguments.length){t=""+t,e=""+e;var a=this._nodes.get(t);if(!a)throw new V("Graph.".concat(r,': could not find the "').concat(t,'" source node in the graph.'));if(!this._nodes.has(e))throw new V("Graph.".concat(r,': could not find the "').concat(e,'" target node in the graph.'));return ct(!0,i,this.multi,o,a,e,n)}throw new B("Graph.".concat(r,": too many arguments (expecting 1, 2 or 3 and got ").concat(arguments.length,")."))};var s="some"+n[0].toUpperCase()+n.slice(1,-1);t.prototype[s]=function(){var t=Array.prototype.slice.call(arguments),e=t.pop();return t.push((function(t,n,i,o,r,s,a){return e(t,n,i,o,r,s,a)})),!!this[r].apply(this,t)};var a="every"+n[0].toUpperCase()+n.slice(1,-1);t.prototype[a]=function(){var t=Array.prototype.slice.call(arguments),e=t.pop();return t.push((function(t,n,i,o,r,s,a){return!e(t,n,i,o,r,s,a)})),!this[r].apply(this,t)}}(t,e),function(t,e){var n=e.name,i=e.type,o=e.direction,r=n.slice(0,-1)+"Entries";t.prototype[r]=function(t,e){if("mixed"!==i&&"mixed"!==this.type&&i!==this.type)return N.empty();if(!arguments.length)return function(t,e){if(0===t.size)return N.empty();var n="mixed"!==e&&e!==t.type,i="undirected"===e,o=t._edges.values();return new N((function(){for(var t,e;;){if((t=o.next()).done)return t;if(e=t.value,!n||e.undirected===i)break}return{value:{edge:e.key,attributes:e.attributes,source:e.source.key,target:e.target.key,sourceAttributes:e.source.attributes,targetAttributes:e.target.attributes,undirected:e.undirected},done:!1}}))}(this,i);if(1===arguments.length){t=""+t;var n=this._nodes.get(t);if(!n)throw new V("Graph.".concat(r,': could not find the "').concat(t,'" node in the graph.'));return function(t,e,n){var i=N.empty();return"undirected"!==t&&("out"!==e&&void 0!==n.in&&(i=Q(i,it(n.in))),"in"!==e&&void 0!==n.out&&(i=Q(i,it(n.out,e?void 0:n.key)))),"directed"!==t&&void 0!==n.undirected&&(i=Q(i,it(n.undirected))),i}(i,o,n)}if(2===arguments.length){t=""+t,e=""+e;var s=this._nodes.get(t);if(!s)throw new V("Graph.".concat(r,': could not find the "').concat(t,'" source node in the graph.'));if(!this._nodes.has(e))throw new V("Graph.".concat(r,': could not find the "').concat(e,'" target node in the graph.'));return function(t,e,n,i){var o=N.empty();return"undirected"!==t&&(void 0!==n.in&&"out"!==e&&i in n.in&&(o=Q(o,st(n.in,i))),void 0!==n.out&&"in"!==e&&i in n.out&&(e||n.key!==i)&&(o=Q(o,st(n.out,i)))),"directed"!==t&&void 0!==n.undirected&&i in n.undirected&&(o=Q(o,st(n.undirected,i))),o}(i,o,s,e)}throw new B("Graph.".concat(r,": too many arguments (expecting 0, 1 or 2 and got ").concat(arguments.length,")."))}}(t,e)}))}(_t),function(t){ht.forEach((function(e){(function(t,e){var n=e.name,i=e.type,o=e.direction;t.prototype[n]=function(t){if("mixed"!==i&&"mixed"!==this.type&&i!==this.type)return[];t=""+t;var e=this._nodes.get(t);if(void 0===e)throw new V("Graph.".concat(n,': could not find the "').concat(t,'" node in the graph.'));return function(t,e,n){if("mixed"!==t){if("undirected"===t)return Object.keys(n.undirected);if("string"==typeof e)return Object.keys(n[e])}var i=[];return pt(!1,t,e,n,(function(t){i.push(t)})),i}("mixed"===i?this.type:i,o,e)}})(t,e),function(t,e){var n=e.name,i=e.type,o=e.direction,r="forEach"+n[0].toUpperCase()+n.slice(1,-1);t.prototype[r]=function(t,e){if("mixed"===i||"mixed"===this.type||i===this.type){t=""+t;var n=this._nodes.get(t);if(void 0===n)throw new V("Graph.".concat(r,': could not find the "').concat(t,'" node in the graph.'));pt(!1,"mixed"===i?this.type:i,o,n,e)}};var s="map"+n[0].toUpperCase()+n.slice(1);t.prototype[s]=function(t,e){var n=[];return this[r](t,(function(t,i){n.push(e(t,i))})),n};var a="filter"+n[0].toUpperCase()+n.slice(1);t.prototype[a]=function(t,e){var n=[];return this[r](t,(function(t,i){e(t,i)&&n.push(t)})),n};var l="reduce"+n[0].toUpperCase()+n.slice(1);t.prototype[l]=function(t,e,n){if(arguments.length<3)throw new B("Graph.".concat(l,": missing initial value. You must provide it because the callback takes more than one argument and we cannot infer the initial value from the first iteration, as you could with a simple array."));var i=n;return this[r](t,(function(t,n){i=e(i,t,n)})),i}}(t,e),function(t,e){var n=e.name,i=e.type,o=e.direction,r=n[0].toUpperCase()+n.slice(1,-1),s="find"+r;t.prototype[s]=function(t,e){if("mixed"===i||"mixed"===this.type||i===this.type){t=""+t;var n=this._nodes.get(t);if(void 0===n)throw new V("Graph.".concat(s,': could not find the "').concat(t,'" node in the graph.'));return pt(!0,"mixed"===i?this.type:i,o,n,e)}};var a="some"+r;t.prototype[a]=function(t,e){return!!this[s](t,e)};var l="every"+r;t.prototype[l]=function(t,e){return!this[s](t,(function(t,n){return!e(t,n)}))}}(t,e),function(t,e){var n=e.name,i=e.type,o=e.direction,r=n.slice(0,-1)+"Entries";t.prototype[r]=function(t){if("mixed"!==i&&"mixed"!==this.type&&i!==this.type)return N.empty();t=""+t;var e=this._nodes.get(t);if(void 0===e)throw new V("Graph.".concat(r,': could not find the "').concat(t,'" node in the graph.'));return function(t,e,n){if("mixed"!==t){if("undirected"===t)return mt(null,n,n.undirected);if("string"==typeof e)return mt(null,n,n[e])}var i=N.empty(),o=new ut;return"undirected"!==t&&("out"!==e&&(i=Q(i,mt(o,n,n.in))),"in"!==e&&(i=Q(i,mt(o,n,n.out)))),"directed"!==t&&(i=Q(i,mt(o,n,n.undirected))),i}("mixed"===i?this.type:i,o,e)}}(t,e)}))}(_t);var Mt=function(t){function n(e){var n=a({type:"directed"},e);if("multi"in n&&!1!==n.multi)throw new B("DirectedGraph.from: inconsistent indication that the graph should be multi in given options!");if("directed"!==n.type)throw new B('DirectedGraph.from: inconsistent "'+n.type+'" type in given options!');return t.call(this,n)||this}return e(n,t),n}(_t),It=function(t){function n(e){var n=a({type:"undirected"},e);if("multi"in n&&!1!==n.multi)throw new B("UndirectedGraph.from: inconsistent indication that the graph should be multi in given options!");if("undirected"!==n.type)throw new B('UndirectedGraph.from: inconsistent "'+n.type+'" type in given options!');return t.call(this,n)||this}return e(n,t),n}(_t),Lt=function(t){function n(e){var n=a({multi:!0},e);if("multi"in n&&!0!==n.multi)throw new B("MultiGraph.from: inconsistent indication that the graph should be simple in given options!");return t.call(this,n)||this}return e(n,t),n}(_t),Nt=function(t){function n(e){var n=a({type:"directed",multi:!0},e);if("multi"in n&&!0!==n.multi)throw new B("MultiDirectedGraph.from: inconsistent indication that the graph should be simple in given options!");if("directed"!==n.type)throw new B('MultiDirectedGraph.from: inconsistent "'+n.type+'" type in given options!');return t.call(this,n)||this}return e(n,t),n}(_t),Pt=function(t){function n(e){var n=a({type:"undirected",multi:!0},e);if("multi"in n&&!0!==n.multi)throw new B("MultiUndirectedGraph.from: inconsistent indication that the graph should be simple in given options!");if("undirected"!==n.type)throw new B('MultiUndirectedGraph.from: inconsistent "'+n.type+'" type in given options!');return t.call(this,n)||this}return e(n,t),n}(_t);function $t(t){t.from=function(e,n){var i=a({},e.options,n),o=new t(i);return o.import(e),o}}return $t(_t),$t(Mt),$t(It),$t(Lt),$t(Nt),$t(Pt),_t.Graph=_t,_t.DirectedGraph=Mt,_t.UndirectedGraph=It,_t.MultiGraph=Lt,_t.MultiDirectedGraph=Nt,_t.MultiUndirectedGraph=Pt,_t.InvalidArgumentsGraphError=B,_t.NotFoundGraphError=V,_t.UsageGraphError=W,_t}()},944:(t,e)=>{"use strict";e.Vb=void 0,e.Vb=function(t,e,n){var i=function(t,e,n){if(0===t.length||0===e.length)return 0;if(n&&!n.caseSensitive&&(t=t.toUpperCase(),e=e.toUpperCase()),t===e)return 1;for(var i=0,o=t.length,r=e.length,s=Math.floor(Math.max(o,r)/2)-1,a=new Array(o),l=new Array(r),c=0;c<o;c++)for(var h=Math.max(0,c-s);h<=Math.min(r,c+s+1);h++)if(!a[c]&&!l[h]&&t[c]===e[h]){++i,a[c]=l[h]=!0;break}if(0===i)return 0;var u=0,d=0;for(c=0;c<o;c++)if(a[c]){for(;!l[d];)d++;t.charAt(c)!==e.charAt(d++)&&u++}return(i/o+i/r+(i-(u/=2))/i)/3}(t,e,n),o=0;if(i>.7){for(var r=Math.min(t.length,e.length),s=0;t[s]===e[s]&&s<4&&s<r;)++o,s++;i+=.1*o*(1-i)}return i}},7106:t=>{"use strict";var e=t.exports=function(t,e,i){"function"==typeof e&&(i=e,e={}),n(e,"function"==typeof(i=e.cb||i)?i:i.pre||function(){},i.post||function(){},t,"",t)};function n(t,i,o,r,s,a,l,c,h,u){if(r&&"object"==typeof r&&!Array.isArray(r)){for(var d in i(r,s,a,l,c,h,u),r){var p=r[d];if(Array.isArray(p)){if(d in e.arrayKeywords)for(var m=0;m<p.length;m++)n(t,i,o,p[m],s+"/"+d+"/"+m,a,s,d,r,m)}else if(d in e.propsKeywords){if(p&&"object"==typeof p)for(var f in p)n(t,i,o,p[f],s+"/"+d+"/"+f.replace(/~/g,"~0").replace(/\//g,"~1"),a,s,d,r,f)}else(d in e.keywords||t.allKeys&&!(d in e.skipKeywords))&&n(t,i,o,p,s+"/"+d,a,s,d,r)}o(r,s,a,l,c,h,u)}}e.keywords={additionalItems:!0,items:!0,contains:!0,additionalProperties:!0,propertyNames:!0,not:!0,if:!0,then:!0,else:!0},e.arrayKeywords={items:!0,allOf:!0,anyOf:!0,oneOf:!0},e.propsKeywords={$defs:!0,definitions:!0,properties:!0,patternProperties:!0,dependencies:!0},e.skipKeywords={default:!0,enum:!0,const:!0,required:!0,maximum:!0,minimum:!0,exclusiveMaximum:!0,exclusiveMinimum:!0,multipleOf:!0,maxLength:!0,minLength:!0,pattern:!0,format:!0,maxItems:!0,minItems:!0,uniqueItems:!0,maxProperties:!0,minProperties:!0}},5072:t=>{"use strict";var e=[];function n(t){for(var n=-1,i=0;i<e.length;i++)if(e[i].identifier===t){n=i;break}return n}function i(t,i){for(var r={},s=[],a=0;a<t.length;a++){var l=t[a],c=i.base?l[0]+i.base:l[0],h=r[c]||0,u="".concat(c," ").concat(h);r[c]=h+1;var d=n(u),p={css:l[1],media:l[2],sourceMap:l[3],supports:l[4],layer:l[5]};if(-1!==d)e[d].references++,e[d].updater(p);else{var m=o(p,i);i.byIndex=a,e.splice(a,0,{identifier:u,updater:m,references:1})}s.push(u)}return s}function o(t,e){var n=e.domAPI(e);return n.update(t),function(e){if(e){if(e.css===t.css&&e.media===t.media&&e.sourceMap===t.sourceMap&&e.supports===t.supports&&e.layer===t.layer)return;n.update(t=e)}else n.remove()}}t.exports=function(t,o){var r=i(t=t||[],o=o||{});return function(t){t=t||[];for(var s=0;s<r.length;s++){var a=n(r[s]);e[a].references--}for(var l=i(t,o),c=0;c<r.length;c++){var h=n(r[c]);0===e[h].references&&(e[h].updater(),e.splice(h,1))}r=l}}},7659:t=>{"use strict";var e={};t.exports=function(t,n){var i=function(t){if(void 0===e[t]){var n=document.querySelector(t);if(window.HTMLIFrameElement&&n instanceof window.HTMLIFrameElement)try{n=n.contentDocument.head}catch(t){n=null}e[t]=n}return e[t]}(t);if(!i)throw new Error("Couldn't find a style target. This probably means that the value for the 'insert' parameter is invalid.");i.appendChild(n)}},540:t=>{"use strict";t.exports=function(t){var e=document.createElement("style");return t.setAttributes(e,t.attributes),t.insert(e,t.options),e}},5056:(t,e,n)=>{"use strict";t.exports=function(t){var e=n.nc;e&&t.setAttribute("nonce",e)}},7825:t=>{"use strict";t.exports=function(t){if("undefined"==typeof document)return{update:function(){},remove:function(){}};var e=t.insertStyleElement(t);return{update:function(n){!function(t,e,n){var i="";n.supports&&(i+="@supports (".concat(n.supports,") {")),n.media&&(i+="@media ".concat(n.media," {"));var o=void 0!==n.layer;o&&(i+="@layer".concat(n.layer.length>0?" ".concat(n.layer):""," {")),i+=n.css,o&&(i+="}"),n.media&&(i+="}"),n.supports&&(i+="}");var r=n.sourceMap;r&&"undefined"!=typeof btoa&&(i+="\n/*# sourceMappingURL=data:application/json;base64,".concat(btoa(unescape(encodeURIComponent(JSON.stringify(r))))," */")),e.styleTagTransform(i,t,e.options)}(e,t,n)},remove:function(){!function(t){if(null===t.parentNode)return!1;t.parentNode.removeChild(t)}(e)}}}},1113:t=>{"use strict";t.exports=function(t,e){if(e.styleSheet)e.styleSheet.cssText=t;else{for(;e.firstChild;)e.removeChild(e.firstChild);e.appendChild(document.createTextNode(t))}}},1407:(t,e,n)=>{"use strict";n.d(e,{R:()=>a});var i=n(4328),o=n(6082),r=n(439);const s=31;async function a(t,e,n=!1,r){const a=e.getSeqHandler(t);let c;r??=new Map;const h=a.isHelm()?e.getSeqMonomers(t):Object.keys(a.stats.freq).filter((t=>""!==t));for(let t=0;t<h.length;t++)r.has(h[t])||r.set(h[t],`${r.size+1}`);if(a.isHelm())c=await i.functions.call("HELM:getMolFiles",{col:t}),c=function(t,e,n=!1){const i=new Array(t.length);for(let o=0;o<t.length;o++){let r=0,a=0,l="\n Datagrok macromolecule handler\n\n 0 0 0 0 0 0 999 V3000\nM V30 BEGIN CTAB\n";const c=t.get(o);r=c.indexOf("\n",r)+1,r=c.indexOf("\n",r)+1,r=c.indexOf("\n",r)+1;const h=parseInt(c.substring(r,r+3)),u=parseInt(c.substring(r+3,r+6));l+=`M V30 COUNTS ${h} ${u} 0 0 0\n`,l+="M V30 BEGIN ATOM\n";for(let t=0;t<h;t++){r=c.indexOf("\n",r)+1+s,a=c.indexOf(" ",r);const i=c.substring(r,a);l+=n?`M V30 ${t+1} R${e.get(i)} 0.000 0.000 0 0\n`:`M V30 ${t+1} At 0.000 0.000 0 0 MASS=${e.get(i)}\n`}l+="M V30 END ATOM\n",l+="M V30 BEGIN BOND\n";for(let t=0;t<u;t++){r=c.indexOf("\n",r)+1;const e=parseInt(c.substring(r,r+3).trim()),n=parseInt(c.substring(r+3,r+6).trim());l+=`M V30 ${t+1} ${parseInt(c.substring(r+6,r+9).trim())} ${e} ${n}\n`}l+="M V30 END BOND\n",l+="M V30 END CTAB\n",l+="M END",i[o]=l}return i}(c,r,n);else{c=new Array(t.length);for(let e=0;e<t.length;e++){const t=l(a.getSplitted(e),r,n);c[e]=t}}return o.Column.fromStrings("monomericMols",c)}function l(t,e,n=!1){let i="\n Datagrok macromolecule handler\n\n 0 0 0 0 0 0 999 V3000\nM V30 BEGIN CTAB\n";i+=`M V30 COUNTS ${t.length} ${t.length?t.length-1:0} 0 0 0\n`,i+="M V30 BEGIN ATOM\n";for(let o=0;o<t.length;o++){const s=t.getCanonical(o);s!==r._S&&(i+=n?`M V30 ${o+1} R${e.get(s)} 0.000 0.000 0 0\n`:`M V30 ${o+1} At 0.000 0.000 0 0 MASS=${e.get(s)}\n`)}i+="M V30 END ATOM\n",i+="M V30 BEGIN BOND\n";for(let e=0;e<t.length-1;e++)i+=`M V30 ${e+1} 1 ${e+1} ${e+2}\n`;return i+="M V30 END BOND\n",i+="M V30 END CTAB\n",i+="M END",i}},6723:(t,e,n)=>{"use strict";n.r(e),n.d(e,{GetRegionEditor:()=>uo,SeqActivityCliffsEditor:()=>fo,SeqPaletteCustom:()=>io,SequenceSpaceEditor:()=>mo,SplitToMonomersEditor:()=>po,SubsequenceSearchTopMenu:()=>Zo,_package:()=>eo,activityCliffs:()=>_o,addCopyMenu:()=>mr,alignSequences:()=>ko,bioSubstructureFilter:()=>rr,bioSubstructureFilterTest:()=>sr,compositionAnalysis:()=>Oo,compositionAnalysisWidget:()=>wo,convertColumnAction:()=>Do,convertDialog:()=>Fo,customSequenceCellRenderer:()=>go,demoBioActivityCliffs:()=>yr,demoBioAtomicLevel:()=>br,demoBioSequenceSpace:()=>gr,demoBioSimilarityDiversity:()=>fr,detectMacromoleculeProbe:()=>Ar,diversitySearchTopMenu:()=>Yo,diversitySearchViewer:()=>zo,fastaSequenceCellRenderer:()=>yo,getBioLib:()=>ao,getHelmMonomers:()=>Uo,getMolFromHelm:()=>xr,getMonomerLibHelper:()=>no,getRegion:()=>Eo,getRegionApp:()=>cr,getRegionHelmApp:()=>hr,getRegionPanel:()=>co,getRegionTopMenu:()=>To,getSeqHandler:()=>lo,getSeqHelper:()=>Sr,helmPreprocessingFunction:()=>Io,importBam:()=>Go,importFasta:()=>Ho,initBio:()=>ro,libraryPanel:()=>ho,longSeqTableFasta:()=>dr,longSeqTableHelm:()=>pr,longSeqTableSeparator:()=>ur,macroMolColumnPropertyPanel:()=>vo,macromoleculeDifferenceCellRenderer:()=>Co,macromoleculePreprocessingFunction:()=>Mo,manageLibrariesAppTreeBrowser:()=>ir,manageLibrariesView:()=>tr,manageMonomerLibraries:()=>Qo,manageMonomerLibrariesView:()=>nr,manageMonomersView:()=>er,monomerCellRenderer:()=>Bo,multipleSequenceAlignmentDialog:()=>Ro,saveAsFasta:()=>or,sdfToJsonLib:()=>vr,searchSubsequenceEditor:()=>Ko,separatorSequenceCellRenderer:()=>bo,seq2atomic:()=>wr,seqIdentity:()=>Cr,sequenceAlignment:()=>Ao,sequenceIdentityScoring:()=>Xo,sequenceSimilarityScoring:()=>Jo,sequenceSpaceTopMenu:()=>Lo,sequenceTooltip:()=>so,similaritySearchTopMenu:()=>qo,similaritySearchViewer:()=>jo,splitToMonomersTopMenu:()=>Wo,test1:()=>Er,testDetectMacromolecule:()=>Vo,toAtomicLevel:()=>No,toAtomicLevelAction:()=>Po,toAtomicLevelPanel:()=>$o,vdRegionsViewer:()=>xo,webLogoAggApp:()=>lr,webLogoLargeApp:()=>ar,webLogoViewer:()=>So});var i,o,r=n(4328),s=n(7389),a=n(6082),l=n(684),c=n(9039);(o=i||(i={})).EUCLIDEAN="EUCLIDEAN",o.MANHATTAN="MANHATTAN";var h=n(1858),u=n(5072),d=n.n(u),p=n(7825),m=n.n(p),f=n(7659),g=n.n(f),y=n(5056),b=n.n(y),v=n(540),w=n.n(v),C=n(1113),A=n.n(C),S=n(7939),x={};x.styleTagTransform=A(),x.setAttributes=b(),x.insert=g().bind(null,"head"),x.domAPI=m(),x.insertStyleElement=w(),d()(S.A,x),S.A&&S.A.locals&&S.A.locals;var E=function(t,e,n,i){return new(n||(n=Promise))((function(o,r){function s(t){try{l(i.next(t))}catch(t){r(t)}}function a(t){try{l(i.throw(t))}catch(t){r(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,a)}l((i=i.apply(t,e||[])).next())}))};let T=null,_=null;function M(t,e){return t&&""!=t?t:e}n(2780);class I{constructor(){this.learningRate={uiName:"Learninig rate",value:1,tooltip:"The initial learning rate for the embedding optimization"},this.nEpochs={uiName:"Epochs",value:0,tooltip:"The number of epochs to optimize embeddings via SGD. Computed automatically if set to 0"},this.nNeighbors={uiName:"Neighbors",value:15,tooltip:"The number of nearest neighbors to construct the fuzzy manifold"},this.spread={uiName:"Spread",value:1,tooltip:"The effective scale of embedded points, used with min distance to control \n the clumped/dispersed nature of the embedding"},this.minDist={uiName:"Min distance",value:.1,tooltip:"The effective minimum distance between embedded points, \n used with spread to control the clumped/dispersed nature of the embedding"},this.randomSeed={uiName:"Random seed",value:null,tooltip:"Random seed",type:"string"},this.useWebGPU={uiName:"Use WebGPU",value:!1,tooltip:"Use WebGPU for Distance and UMAP computations",type:"boolean",disableTooltip:"WebGPU is not available"},function(){return E(this,void 0,void 0,(function*(){if(!navigator.gpu)return console.error("WebGPU is not supported in this browser"),null;if(!T&&(T=yield navigator.gpu.requestAdapter(),null==T))return null;let t=null;return"info"in T&&(t=T.info),t?M(t.description,M(t.vendor,"No GPU description available")):"No GPU description available"}))}().then((t=>{t?(this.useWebGPU.tooltip+=` (${t})`,this.useWebGPU.value=!0):(this.useWebGPU.value=!1,this.useWebGPU.disable=!0)}))}}class L{constructor(){this.epsilon={uiName:"Epsilon",value:10,tooltip:"Epsilon is learning rate"},this.perplexity={uiName:"Perplexity",value:30,tooltip:"Roughly how many neighbors each point influences"}}}Promise.resolve(),n(934),n(8903);const N="MCL";a.SEMTYPE.MOLECULE,a.SEMTYPE.MACROMOLECULE;class P{constructor(){this.epsilon={uiName:"Epsilon",value:.01,tooltip:"Minimum distance between cluster points",min:0,max:2,step:.005},this.minPts={uiName:"Minimum points",value:4,tooltip:"Minimum number of points in cluster",min:1,max:1e3,step:1}}}class ${get algorithmOptions(){const t=this.methodsParams[this.methodInput.value],e={};return Object.keys(t).forEach((n=>{null!=t[n].value&&(e[n]=t[n].value)})),e}get dbScanOptions(){return{dbScanEpsilon:this.dbScanParams.epsilon.value??.01,dbScanMinPts:this.dbScanParams.minPts.value??4}}constructor(t={}){this.editorSettings={},this.plotEmbeddingsInput=s.input.bool("Plot embeddings",{value:!0}),this.clusterEmbeddingsInput=s.input.bool("Cluster embeddings",{value:!0}),this.preprocessingFunctionInputRoot=null,this.methods=[c.c.UMAP,c.c.T_SNE],this.columnFunctionsMap={},this.supportedFunctions={},this.availableMetrics=[],this.methodSettingsDiv=s.inputs([]),this.dbScanSettingsDiv=s.inputs([]),this.preprocessingFuncSettingsDiv=s.inputs([]),this.preprocessingFunctionSettings={},this.methodsParams={[c.c.UMAP]:new I,[c.c.T_SNE]:new L},this.dbScanParams=new P,this.editorSettings=t,this.editorSettings.enableMCL&&this.methods.push(N),a.Func.find({tags:[l.GP]}).forEach((t=>{const e=t.options.get(l.n3)??"",n=t.friendlyName??t.name,i=t.options.get(l.C0)??"",o=t.options.get(l._X)??"",r=t.options.get(l.Gi)??"";this.editorSettings.semtype&&!e.includes(this.editorSettings.semtype)||this.editorSettings.type&&!i.includes(this.editorSettings.type)||this.editorSettings.units&&!o.includes(this.editorSettings.units)||(this.supportedFunctions[n]={func:t,semTypes:e?e.split(","):[],types:i?i.split(","):[],units:o?o.split(","):[],distanceFunctions:r?r.split(","):[]})})),this.tableInput=s.input.table("Table",{value:r.shell.tv.dataFrame,items:r.shell.tables,onValueChanged:()=>{this.onTableInputChanged()}}),this.onTableInputChanged(),this.regenerateColInput(),this.onColumnInputChanged();let e=!1,n=!1;this.methodInput=s.input.choice("Method",{value:c.c.UMAP,items:this.methods,onValueChanged:t=>{e&&this.createAlgorithmSettingsDiv(this.methodSettingsDiv,this.methodsParams[t])}}),this.methodSettingsIcon=s.icons.settings((()=>{e=!e,e?this.createAlgorithmSettingsDiv(this.methodSettingsDiv,this.methodsParams[this.methodInput.value]):s.empty(this.methodSettingsDiv)}),"Modify methods parameters"),this.dbScanSettingsIcon=s.icons.settings((()=>{n=!n,n?this.createAlgorithmSettingsDiv(this.dbScanSettingsDiv,this.dbScanParams):s.empty(this.dbScanSettingsDiv)}),"Modify clustering parameters"),this.clusterEmbeddingsInput.classList.add("ml-dim-reduction-settings-input"),this.clusterEmbeddingsInput.root.prepend(this.dbScanSettingsIcon),this.methodInput.root.classList.add("ml-dim-reduction-settings-input"),this.methodInput.root.prepend(this.methodSettingsIcon),this.methodSettingsDiv=s.inputs([]);const i=this.columnFunctionsMap[this.colInput.value.name];this.preprocessingFunctionInput=s.input.choice("Encoding function",{value:i[0],items:i,onValueChanged:()=>{this.onPreprocessingFunctionChanged()}});let o=!1;this.preprocessingFunctionInputRoot||(this.preprocessingFunctionInputRoot=this.preprocessingFunctionInput.root,o=!0),o||(s.empty(this.preprocessingFunctionInputRoot),Array.from(this.preprocessingFunctionInput.root.children).forEach((t=>this.preprocessingFunctionInputRoot.append(t)))),this.preprocessingFunctionInputRoot.classList.add("ml-dim-reduction-settings-input");let h=!1;this.preprocessingFuncSettingsIcon=s.icons.settings((async()=>{h?s.empty(this.preprocessingFuncSettingsDiv):await this.createPreprocessingFuncParamsDiv(this.preprocessingFuncSettingsDiv,this.supportedFunctions[this.preprocessingFunctionInput.value].func),h=!h}),"Modify encoding function parameters"),this.preprocessingFunctionInputRoot.prepend(this.preprocessingFuncSettingsIcon),this.similarityMetricInput=s.input.choice("Similarity",{value:"",items:[]}),this.similarityMetricInput.nullable=!1,this.similarityMetricInputRoot||(this.similarityMetricInputRoot=this.similarityMetricInput.root),this.onPreprocessingFunctionChanged()}getColInput(){const t=this.tableInput.value?.columns.toList().find((t=>!!this.columnFunctionsMap[t.name]))??null,e=s.input.column("Column",{table:this.tableInput.value,value:t,onValueChanged:()=>this.onColumnInputChanged(),filter:t=>!!this.columnFunctionsMap[t.name]});return this.colInputRoot||(this.colInputRoot=e.root),e}regenerateColInput(){let t=!1;this.colInputRoot&&(t=!0,s.empty(this.colInputRoot)),this.colInput=this.getColInput(),t&&Array.from(this.colInput.root.children).forEach((t=>this.colInputRoot.append(t))),this.onColumnInputChanged()}onTableInputChanged(){const t=this.tableInput.value;t&&(this.columnFunctionsMap={},t.columns.toList().forEach((t=>{Object.keys(this.supportedFunctions).forEach((e=>{const n=this.supportedFunctions[e].semTypes,i=this.supportedFunctions[e].types,o=this.supportedFunctions[e].units,r=!n.length||t.semType&&n.includes(t.semType),s=!i.length||i.includes(t.type),a=!o.length||t.meta.units&&o.includes(t.meta.units);r&&s&&a&&(this.columnFunctionsMap[t.name]||(this.columnFunctionsMap[t.name]=[]),this.columnFunctionsMap[t.name].push(e))}))})),this.regenerateColInput())}onColumnInputChanged(){const t=this.colInput.value;if(!t)return;const e=this.columnFunctionsMap[t.name];this.preprocessingFunctionInput=s.input.choice("Preprocessing function",{value:e[0],items:e,onValueChanged:()=>{this.onPreprocessingFunctionChanged()}});let n=!1;this.preprocessingFunctionInputRoot||(this.preprocessingFunctionInputRoot=this.preprocessingFunctionInput.root,n=!0),n||(s.empty(this.preprocessingFunctionInputRoot),Array.from(this.preprocessingFunctionInput.root.children).forEach((t=>this.preprocessingFunctionInputRoot.append(t)))),this.onPreprocessingFunctionChanged()}onPreprocessingFunctionChanged(){s.empty(this.preprocessingFuncSettingsDiv),this.preprocessingFunctionSettings={};const t=this.preprocessingFunctionInput.value,e=this.supportedFunctions[t].distanceFunctions;this.availableMetrics=[...e],this.similarityMetricInput=s.input.choice("Similarity",{value:this.availableMetrics[0],items:this.availableMetrics}),this.similarityMetricInput.nullable=!1,this.similarityMetricInputRoot||(this.similarityMetricInputRoot=this.similarityMetricInput.root),s.empty(this.similarityMetricInputRoot),Array.from(this.similarityMetricInput.root.children).forEach((t=>this.similarityMetricInputRoot.append(t))),this.preprocessingFuncSettingsIcon&&(this.supportedFunctions[t].func.inputs.length<3?this.preprocessingFuncSettingsIcon.style.display="none":this.preprocessingFuncSettingsIcon.style.display="flex")}createAlgorithmSettingsDiv(t,e){return s.empty(t),Object.keys(e).forEach((n=>{const i=e[n],o="string"===i.type?s.input.string(i.uiName,{value:i.value??"",onValueChanged:t=>{i.value=t}}):"boolean"===i.type?s.input.bool(i.uiName,{value:i.value??!1,onValueChanged:t=>{i.value=t}}):s.input.float(i.uiName,{value:i.value,onValueChanged:t=>{i.value=t}});t.append(o.root),i.disable?(o.enabled=!1,s.tooltip.bind(o.input??o.root,i.disableTooltip??"")):s.tooltip.bind(o.input??o.root,i.tooltip)})),t}async createPreprocessingFuncParamsDiv(t,e){if(s.empty(t),e.inputs.length<3)return s.div();const n=e.prepare(),i=await n.buildEditor(s.div());for(let o=2;o<e.inputs.length;o++){const r=e.inputs[o];(this.preprocessingFunctionSettings[r.name]||n.inputParams[e.inputs[o].name].value||r.defaultValue)&&(this.preprocessingFunctionSettings[r.name]=this.preprocessingFunctionSettings[r.name]??n.inputParams[r.name].value??r.defaultValue);const s=i.find((t=>t.property.name===r.name));s&&(null!==this.preprocessingFunctionSettings[r.name]&&void 0!==this.preprocessingFunctionSettings[r.name]&&(s.value=this.preprocessingFunctionSettings[r.name]),s.onChanged.subscribe((t=>{this.preprocessingFunctionSettings[r.name]=t})),t.append(s.root))}return t}getEditor(){return s.div([this.tableInput,this.colInputRoot,this.preprocessingFunctionInputRoot,this.preprocessingFuncSettingsDiv,this.methodInput,this.methodSettingsDiv,this.similarityMetricInputRoot,this.plotEmbeddingsInput,this.clusterEmbeddingsInput,this.dbScanSettingsDiv],{style:{minWidth:"420px"},classes:"ui-form dim-reduction-dialog-form"})}getParams(){return{table:this.tableInput.value,col:this.colInput.value,methodName:this.methodInput.value,preprocessingFunction:this.supportedFunctions[this.preprocessingFunctionInput.value].func,similarityMetric:this.similarityMetricInput.value,plotEmbeddings:this.plotEmbeddingsInput.value,clusterEmbeddings:this.clusterEmbeddingsInput.value,options:{...this.algorithmOptions,...this.dbScanOptions,preprocessingFuncArgs:this.preprocessingFunctionSettings??{}}}}getInput(){return{table:this.tableInput.value.name,col:this.colInput.value.name,methodName:this.methodInput.value,preprocessingFunction:this.preprocessingFunctionInput.value,similarityMetric:this.similarityMetricInput.value,plotEmbeddings:this.plotEmbeddingsInput.value,clusterEmbeddings:this.clusterEmbeddingsInput.value,options:{...this.algorithmOptions,...this.dbScanOptions,preprocessingFuncArgs:this.preprocessingFunctionSettings??{}}}}getStringInput(){return JSON.stringify(this.getInput())}async applyStringInput(t){try{const e=JSON.parse(t);await this.applyInput(e)}catch(t){r.shell.error("Error applying input from history"),console.error(t)}}async applyInput(t){try{const e=this.tableInput.value?.col(t.col);if(!e)throw new Error("Column not found");this.colInput.value=e,this.preprocessingFunctionInput.value=t.preprocessingFunction,this.similarityMetricInput.value=t.similarityMetric,this.plotEmbeddingsInput.value=t.plotEmbeddings,this.clusterEmbeddingsInput.value=t.clusterEmbeddings;const n=this.methodsParams[this.methodInput.value];Object.keys(n).forEach((e=>{null!=t.options[e]&&(this.methodsParams[t.methodName][e].value=t.options[e])})),this.methodInput.value=t.methodName,this.preprocessingFunctionSettings=t.options.preprocessingFuncArgs,await this.createPreprocessingFuncParamsDiv(this.preprocessingFuncSettingsDiv,this.supportedFunctions[this.preprocessingFunctionInput.value].func)}catch(t){r.shell.error("Error applying input from history"),console.error(t)}}}var R=n(9713),k=n(6295);const O=t=>null==t;function H(t,e,n,i){if(n>t[t.length-1])return;const o=t.findIndex((t=>n<t));t.pop(),t.splice(o,0,n),e.pop(),e.splice(o,0,i)}class G{constructor(t=!0,e=!0){const i=navigator.hardwareConcurrency;this._workerCount=t?Math.max(i-2,1):1,this._workers=new Array(this._workerCount).fill(null).map((()=>new Worker(new URL(n.p+n.u(793),n.b)))),this._terminateOnComplete=e}async calc(t,e,n=!0,o){return await this.calcMulti([t],[e],n,[o??{}],[1],i.MANHATTAN)}async calcMulti(t,e,n=!0,o=[{}],r=[1],s=i.MANHATTAN){if(t.length<1)throw new Error("values must contain at least one array");if(e.length!==t.length||o.length!==t.length||r.length!==t.length)throw new Error("values, fnNames, weights and opts must have the same length");return new Promise((async(i,a)=>{try{const a=t[0].length,l=new Array(this._workerCount),c=a*(a-1)/2;this._workerCount=Math.min(this._workerCount,c);const h=c/this._workerCount,u=new Float32Array(c);let d=0,p=1,m=0,f=Number.MIN_VALUE;for(let n=0;n<this._workerCount;n++){const i=Math.floor(n*h),g=n===this._workerCount-1?c:Math.floor((n+1)*h),y=d,b=p;n!==this._workerCount-1&&(d=a-2-Math.floor(Math.sqrt(-8*g+4*a*(a-1)-7)/2-.5),p=g-a*d+Math.floor((d+1)*(d+2)/2)),this._workers[n].postMessage({values:t,fnNames:e,startRow:y,startCol:b,chunckSize:g-i,opts:o,weights:r,aggregationMethod:s}),l[n]=new Promise(((t,e)=>{this._workers[n].onmessage=({data:{error:o,distanceMatrixData:r,min:s,max:a}})=>{this._terminateOnComplete&&setTimeout((()=>this._workers[n].terminate())),o?e(o):(u.set(r,i),s<m&&(m=s),a>f&&(f=a),t())}}))}await Promise.all(l),n&&u.forEach(((t,e)=>{u[e]=(t-m)/(f-m)})),i(u)}catch(t){a(t)}}))}terminate(){this._workers.forEach((t=>t.terminate()))}}class F{constructor(){this._workerCount=Math.max(navigator.hardwareConcurrency-2,1)}static pruneSparseMatrix(t,e=1e6){const n=200,i=new Uint32Array(n),o=t.distance.length,r=t.distance;for(let t=0;t<o;t++)i[Math.floor(r[t]*n)]++;let s=0,a=0;for(let t=0;t<n&&(s+=i[t],a=t,!(s>=e));t++);const l=new Uint32Array(s),c=new Uint32Array(s),h=new Float32Array(s),u=t.i,d=t.j;let p=0;const m=(a+1)/n;for(let t=0;t<o;t++)r[t]<m&&(l[p]=u[t],c[p]=d[t],h[p]=r[t],p++);return{i:l,j:c,distance:h}}async calcMultiColumn(t,e,o,r=[{}],s=[1],a=i.EUCLIDEAN){const l=t[0].length*(t[0].length-1)/2,c=Math.floor(l/this._workerCount),h=t[0].length>2e4?await this.getMinimalThreshold(t,e,r,s,a):0;o<h&&(console.log(`using threshold ${h}`),o=h),r.forEach(((t,e)=>r[e].threshold=o));const u=new Array(this._workerCount),d=new Array(this._workerCount).fill(null).map((()=>new Worker(new URL(n.p+n.u(111),n.b))));for(let n=0;n<this._workerCount;n++)u[n]=new Promise(((i,h)=>{const u=n*c,p=n===this._workerCount-1?l:(n+1)*c;p<=u&&i({i:new Int32Array(0),j:new Int32Array(0),distance:new Float32Array(0),idx:n}),d[n].postMessage({values:t,startIdx:u,endIdx:p,threshold:o,fnNames:e,opts:r,weights:s,aggregationMethod:a}),d[n].onmessage=({data:{error:t,i:e,j:o,distance:r}})=>{t?(d[n].terminate(),h(t)):(d[n].terminate(),i({i:e,j:o,distance:r,idx:n}))}}));const p=await Promise.all(u),m=p.reduce(((t,e)=>t+e.i.length),0),f=new Int32Array(m),g=new Int32Array(m),y=new Float32Array(m);let b=0;for(const t of p)f.set(t.i,b),g.set(t.j,b),y.set(t.distance,b),b+=t.i.length;return{i:f,j:g,distance:y}}async calc(t,e,n,i={}){return await this.calcMultiColumn([t],[e],n,[i],[1])}async getKNN(t,e,n=15,i={}){return await this.multiColumnKNN([t],[e],n,[i],[1])}async getThresholdKNN(t,e,n=.8,i={}){return await this.multiColumnThresholdKnn([t],[e],n,[i],[1])}async multiColumnThresholdKnn(t,e,o=.8,r,s,a=i.EUCLIDEAN){if(t.length!==e.length||t.length!==r.length||t.length!==s.length)throw new Error("values, distance functions, options and weights arrays should have the same length");if(t.some((e=>e.length!==t[0].length)))throw new Error("all values arrays should have the same length");const l=t[0].length*(t[0].length-1)/2,c=Math.floor(l/this._workerCount),h=new Array(this._workerCount),u=new Array(this._workerCount).fill(null).map((()=>new Worker(new URL(n.p+n.u(603),n.b))));for(let n=0;n<this._workerCount;n++)h[n]=new Promise(((i,h)=>{const d=n*c,p=n===this._workerCount-1?l:(n+1)*c;p<=d&&i({knnDistances:new Array(0),knnIndexes:new Array(0)}),u[n].postMessage({values:t,startIdx:d,endIdx:p,fnNames:e,opts:r,threshold:o,weights:s,aggregationMethod:a}),u[n].onmessage=({data:{error:t,knnDistances:e,knnIndexes:o}})=>{t?(u[n].terminate(),h(t)):(u[n].terminate(),i({knnDistances:e,knnIndexes:o}))}}));const d=await Promise.all(h),p=new Int32Array(t[0].length);for(const e of d)for(let n=0;n<t[0].length;++n)p[n]+=e.knnIndexes[n]?.length??0;const m={knnDistances:new Array(t[0].length).fill(null).map(((t,e)=>new Array(p[e]))),knnIndexes:new Array(t[0].length).fill(null).map(((t,e)=>new Array(p[e])))};for(const e of d)for(let n=0;n<t[0].length;++n)for(let t=0;t<(e.knnDistances[n]?.length??0);++t)m.knnDistances[n][p[n]-1]=e.knnDistances[n][t],m.knnIndexes[n][p[n]-1]=e.knnIndexes[n][t],p[n]-=1;return m}async multiColumnSingleValueKNN(t,e,o,r=15,s,a,l=i.EUCLIDEAN){if(t.length!==o.length||t.length!==s.length||t.length!==a.length)throw new Error("values, distance functions, options and weights arrays should have the same length");if(t.some((e=>e.length!==t[0].length)))throw new Error("all values arrays should have the same length");const c=new Array(this._workerCount).fill(null).map((()=>new Worker(new URL(n.p+n.u(810),n.b)))),h=new Array(this._workerCount),u=t[0].length,d=t.map((t=>t[e])),p=Math.ceil(u/this._workerCount);for(let e=0;e<this._workerCount;e++)h[e]=new Promise(((n,i)=>{const h=e*p,m=e===this._workerCount-1?u:(e+1)*p;m<=h&&n({knnDistances:new Array(0),knnIndexes:new Array(0)}),c[e].postMessage({values:t.map((t=>t.slice(h,m))),target:d,fnNames:o,opts:s,nNeighbours:r,weights:a,aggregationMethod:l,startIdx:h}),c[e].onmessage=({data:{error:t,knnDistances:o,knnIndexes:r}})=>{t?(c[e].terminate(),i(t)):(c[e].terminate(),n({knnDistances:o,knnIndexes:r}))}}));const m=await Promise.all(h),f={knnDistances:new Array(r).fill(99999),knnIndexes:new Array(r).fill(-1)};for(const t of m)for(let e=0;e<(t.knnDistances?.length??0);++e)H(f.knnDistances,f.knnIndexes,t.knnDistances[e],t.knnIndexes[e]);return f}async multiColumnKNN(t,e,o=15,r,s,a=i.EUCLIDEAN){if(t.length!==e.length||t.length!==r.length||t.length!==s.length)throw new Error("values, distance functions, options and weights arrays should have the same length");if(t.some((e=>e.length!==t[0].length)))throw new Error("all values arrays should have the same length");const l=t[0].length*(t[0].length-1)/2,c=Math.floor(l/this._workerCount),h=new Array(this._workerCount),u=new Array(this._workerCount).fill(null).map((()=>new Worker(new URL(n.p+n.u(950),n.b))));for(let n=0;n<this._workerCount;n++)h[n]=new Promise(((i,h)=>{const d=n*c,p=n===this._workerCount-1?l:(n+1)*c;p<=d&&i({knnDistances:new Array(0),knnIndexes:new Array(0)}),u[n].postMessage({values:t,startIdx:d,endIdx:p,fnNames:e,opts:r,nNeighbours:o,weights:s,aggregationMethod:a}),u[n].onmessage=({data:{error:t,knnDistances:e,knnIndexes:o}})=>{t?(u[n].terminate(),h(t)):(u[n].terminate(),i({knnDistances:e,knnIndexes:o}))}}));const d=await Promise.all(h),p={knnDistances:new Array(t[0].length).fill(null).map((()=>new Array(o).fill(99999))),knnIndexes:new Array(t[0].length).fill(null).map((()=>new Array(o).fill(-1)))};for(const e of d)for(let n=0;n<t[0].length;++n)for(let t=0;t<(e.knnDistances[n]?.length??0);++t)H(p.knnDistances[n],p.knnIndexes[n],e.knnDistances[n][t],e.knnIndexes[n][t]);return p}async getSampleDistances(t,e,o=[],r,s=i.EUCLIDEAN){const a=new Array(this._workerCount).fill(null).map((()=>new Worker(new URL(n.p+n.u(778),n.b))));try{const n=t[0].length*(t[0].length-1)/2,i=Math.floor(n/this._workerCount),l=1e6,c=Math.max(Math.min(n/1e3,l),Math.min(n,l)),h=Math.floor(c/this._workerCount),u=new Array(this._workerCount);for(let l=0;l<this._workerCount;l++)u[l]=new Promise(((c,u)=>{const d=l*i,p=l===this._workerCount-1?n:(l+1)*i;a[l].postMessage({values:t,startIdx:d,endIdx:p,sampleLength:h,fnNames:e,opts:o,weights:r,aggregationMethod:s}),a[l].onmessage=({data:{error:t,distance:e}})=>{a[l].terminate(),t?u(t):c({distance:e})}}));const d=await Promise.all(u),p=d.reduce(((t,e)=>t+e.distance.length),0),m=new Float32Array(p);let f=0;for(const t of d)m.set(t.distance,f),f+=t.distance.length;return m.sort(),m}catch(t){return a?.forEach((t=>t?.terminate())),console.error(t),new Float32Array(1).fill(.5)}}async getMinimalThreshold(t,e,n=[],o,r=i.EUCLIDEAN){try{const i=t.length*(t.length-1)/2,s=await this.getSampleDistances(t,e,n,o,r);return 1-s[Math.floor(7e7/i*s.length)]}catch(t){return console.error(t),.5}}static calcSync(t,e,n,i){const o=[],r=[],s=[];let a=0,l=0,c=0;const h=t.length*(t.length-1)/2;for(;a<h;){const e=O(t[l])||O(t[c])?1:n(t[l],t[c]);1-e>=i&&(o.push(l),r.push(c),s.push(e)),a++,c++,c===t.length&&(l++,c=l+1)}return{i:new Int32Array(o),j:new Int32Array(r),distance:new Float32Array(s)}}}var D,B,V=n(8774);(B=D||(D={})).none="none",B.bold="bold",B.dashed="dashed";class W{get currentLineId(){return this._currentLineIdx}set currentLineId(t){t!==this._currentLineIdx&&(this._currentLineIdx=t,this.sp.render(this.ctx))}set linesToRender(t){this.updateLines(t),this.sp.render(this.ctx)}set linesVisibility(t){this.visibility=t,this.sp.render(this.ctx)}constructor(t,e,n,i,o=D.none){var r;this._currentLineIdx=-1,this.lineClicked=new h.Subject,this.lineHover=new h.Subject,this.mouseOverLineId=-1,this.arrowWidth=15,this.sp=t,this.xAxisCol=this.sp.dataFrame.columns.byName(e),this.yAxisCol=this.sp.dataFrame.columns.byName(n),this.canvas=this.sp.getInfo().canvas,this.ctx=this.canvas.getContext("2d"),this.currentLineStyle=o,this.updateLines(i),this.visibility=null!==(r=i.visibility)&&void 0!==r?r:new V.A(this.lines.from.length),i.visibility||this.visibility.setAll(!0,!1),i.arrowSize&&(this.arrowWidth=i.arrowSize),this.canvas.onmousedown=t=>{var e;(null===(e=this.lines)||void 0===e?void 0:e.skipMouseOverDetection)&&(this.mouseOverLineId=this.checkCoordsOnLine(t.offsetX,t.offsetY)),-1!==this.mouseOverLineId&&this.lineClicked.next({x:t.clientX,y:t.clientY,id:this.mouseOverLineId,event:t})},this.canvas.onmousemove=t=>{var e;this.mouseOverLineId=(null===(e=this.lines)||void 0===e?void 0:e.skipMouseOverDetection)?-1:this.checkCoordsOnLine(t.offsetX,t.offsetY),-1!==this.mouseOverLineId&&this.lineHover.next({x:t.clientX,y:t.clientY,id:this.mouseOverLineId,event:t})},t.onEvent("d4-before-draw-scene").subscribe((t=>{this.renderLines()}))}updateLines(t){this.lines=t,this.multipleLinesCounts=new Uint8Array(this.lines.from.length),t.skipMultiLineCalculation?this.multipleLinesCounts.fill(0):this.createMultiLinesIndices()}renderLines(){var t,e,n,i,o,r,s,a,l,c,h,u,d,p,m,f,g;const y=this.lines.colors||this.lines.widths||this.lines.opacities||this.lines.drawArrowsArr;y||(this.ctx.lineWidth=null!==(t=this.lines.width)&&void 0!==t?t:1,this.ctx.strokeStyle=`rgba(${null!==(e=this.lines.color)&&void 0!==e?e:"0,128,0"},${null!==(n=this.lines.opacity)&&void 0!==n?n:1})`);const b=this.sp.dataFrame.filter,v=Math.pow(null!==(i=this.lines.shortLineThreshold)&&void 0!==i?i:5,2);for(let t=0;t<this.lines.from.length;t++)if(b.get(this.lines.from[t])&&b.get(this.lines.to[t])&&this.visibility.getBit(t)){let e=0;const n=this.sp.getMarkerSize(this.lines.from[t])/2,i=this.sp.getMarkerSize(this.lines.to[t])/2,b=this.sp.pointToScreen(this.lines.from[t]);let w=null==b?void 0:b.x,C=null==b?void 0:b.y;const A=this.sp.pointToScreen(this.lines.to[t]);let S=null==A?void 0:A.x,x=null==A?void 0:A.y;const E=Math.min(this.sp.viewBox.width,this.sp.viewBox.height);if(this.ctx.beginPath(),w&&C&&S&&x&&Math.hypot(S-w,x-C)/E>.01){if(y){const e=(null===(o=this.lines.colors)||void 0===o?void 0:o[t])?null===(r=this.lines.colors)||void 0===r?void 0:r[t]:null!==(s=this.lines.color)&&void 0!==s?s:"0,128,0",n=(null===(a=this.lines.opacities)||void 0===a?void 0:a[t])?null===(l=this.lines.opacities)||void 0===l?void 0:l[t]:null!==(c=this.lines.opacity)&&void 0!==c?c:1;this.ctx.strokeStyle=`rgba(${e},${n})`,this.ctx.lineWidth=(null===(h=this.lines.widths)||void 0===h?void 0:h[t])?null===(u=this.lines.widths)||void 0===u?void 0:u[t]:null!==(d=this.lines.width)&&void 0!==d?d:1}t===this._currentLineIdx&&this.toggleCurrentLineStyle(!0);const b=this.multipleLinesCounts[t];let A=null;if(b){e=this.getLineLength(w,C,S,x);const o=this.getPointOnDistance(w,C,S,x,i,e),r=this.getPointOnDistance(S,x,w,C,n,e);w=o.x,C=o.y,S=r.x,x=r.y,A=this.lines.from[t]>this.lines.to[t]?this.findControlPoint(b,w,C,S,x,t):this.findControlPoint(b,S,x,w,C,t),this.ctx.moveTo(w,C),this.ctx.quadraticCurveTo(A.x,A.y,S,x)}else(!this.lines.skipShortLines||Math.pow(S-w,2)+Math.pow(x-C,2)>v)&&(this.ctx.moveTo(w,C),this.ctx.lineTo(S,x));if((null!==(p=this.lines.drawArrows)&&void 0!==p?p:null===(m=this.lines.drawArrowsArr)||void 0===m?void 0:m.getBit(t))&&(e||(e=this.getLineLength(w,C,S,x)),e>this.arrowWidth)){const t=b?null:this.getPointOnDistance(w,C,S,x,i,e),n=b?A.x:w,o=b?A.y:C;this.canvasArrow(this.ctx,null!==(f=null==t?void 0:t.x)&&void 0!==f?f:w,null!==(g=null==t?void 0:t.y)&&void 0!==g?g:C,n,o)}this.ctx.stroke(),this.ctx.closePath(),t===this._currentLineIdx&&this.toggleCurrentLineStyle(!1)}}this.fillLeftBottomRect()}toggleCurrentLineStyle(t){switch(this.currentLineStyle){case D.bold:t?this.ctx.lineWidth+=2:this.ctx.lineWidth-=2;break;case D.dashed:t?this.ctx.setLineDash([5,5]):this.ctx.setLineDash([]);break;default:return}}fillLeftBottomRect(){const t=new Path2D;t.rect(this.sp.yAxisBox.minX,this.sp.yAxisBox.maxY,this.sp.yAxisBox.width,this.sp.xAxisBox.height),this.ctx.fillStyle="white",this.ctx.beginPath(),this.ctx.fill(t),this.ctx.closePath()}createMultiLinesIndices(){const t={};for(let e=0;e<this.lines.from.length;e++){let n=0,i=0;this.lines.from[e]<this.lines.to[e]?(n=this.lines.from[e],i=this.lines.to[e]):(n=this.lines.to[e],i=this.lines.from[e]),t[`${n}|${i}`]?(1===t[`${n}|${i}`].length&&(this.multipleLinesCounts[t[`${n}|${i}`][0]]=1,t[`${n}|${i}`].push(1)),this.multipleLinesCounts[e]=++t[`${n}|${i}`][1]):t[`${n}|${i}`]=[e]}}checkCoordsOnLine(t,e){let n=-1,i=null,o=null;const r=this.sp.dataFrame.filter;for(let s=0;s<this.lines.from.length;s++)if(r.get(this.lines.from[s])&&r.get(this.lines.to[s])&&this.visibility.getBit(s)){const r=this.sp.getMarkerSize(this.lines.from[s])/2,a=this.sp.getMarkerSize(this.lines.to[s])/2,l=this.sp.worldToScreen(this.xAxisCol.get(this.lines.from[s]),this.yAxisCol.get(this.lines.from[s])),c=this.sp.worldToScreen(this.xAxisCol.get(this.lines.to[s]),this.yAxisCol.get(this.lines.to[s]));if(this.multipleLinesCounts[s]){const n=this.getLineLength(l.x,l.y,c.x,c.y),i=this.getPointOnDistance(l.x,l.y,c.x,c.y,a,n),h=this.getPointOnDistance(c.x,c.y,null==l?void 0:l.x,null==l?void 0:l.y,r,n),u=this.lines.from[s]>this.lines.to[s]?this.findControlPoint(this.multipleLinesCounts[s],i.x,i.y,h.x,h.y,s):this.findControlPoint(this.multipleLinesCounts[s],h.x,h.y,i.x,i.y,s);o=this.calculateDistToCurveLine(s,t,e,i,h,u)}else o=this.calculateDistToStraightLine(t,e,l,c);(!i&&null!==o&&o<5||i&&null!==o&&o<i)&&(i=o,n=s)}return n}calculateDistToStraightLine(t,e,n,i){const o=Math.min(n.x,i.x),r=Math.max(n.x,i.x),s=Math.min(n.y,i.y),a=Math.max(n.y,i.y);return t>=o-2&&t<=r+2&&e>=s-2&&e<=a+2?this.distToStraightLineSegment(t,e,n,i):null}distToStraightLineSegment(t,e,n,i){const o=(t,e,n,i)=>Math.pow(t-n,2)+Math.pow(e-i,2),r=o(n.x,n.y,i.x,i.y);if(0==r)return o(t,e,n.x,n.y);let s=((t-n.x)*(i.x-n.x)+(e-n.y)*(i.y-n.y))/r;return s=Math.max(0,Math.min(1,s)),o(t,e,n.x+s*(i.x-n.x),n.y+s*(i.y-n.y))}calculateDistToCurveLine(t,e,n,i,o,r){const s=Math.min(i.x,o.x,r.x),a=Math.max(i.x,o.x,r.x),l=Math.min(i.y,o.y,r.y),c=Math.max(i.y,o.y,r.y);if(e>=s-2&&e<=a+2&&n>=l-2&&n<=c+2){const t=a-s,h=c-l;return this.calculateDistToCurveInRect(e,n,i,r,o,t,h)}return null}calculateDistToCurveInRect(t,e,n,i,o,r,s){const a=Math.floor((r+s)/3),l=1/a,c=new Uint32Array(a),h=new Uint32Array(a),u=new Uint32Array(a);let d=null;const p=new V.A(a);for(let r=0;r<c.length;r++){const s=r*l,a=Math.pow(1-s,2)*n.x+2*s*(1-s)*i.x+Math.pow(s,2)*o.x,p=Math.pow(1-s,2)*n.y+2*s*(1-s)*i.y+Math.pow(s,2)*o.y,m=Math.abs(t-a),f=Math.abs(e-p),g=m+f;(!d||d>g)&&(d=g),u[r]=Math.max(m,f),c[r]=a,h[r]=p}for(let t=0;t<c.length;t++)u[t]<d&&p.setBit(t,!0,!1);let m=null;for(let n=-1;-1!==(n=p.findNext(n));){const i=Math.hypot(c[n]-t,h[n]-e);(!m||m>i)&&(m=i)}return m}getLineLength(t,e,n,i){return Math.sqrt(Math.pow(n-t,2)+Math.pow(i-e,2))}getPointOnDistance(t,e,n,i,o,r){const s=n-o*((n-t)/r),l=i-o*((i-e)/r);return new a.Point(s,l)}findControlPoint(t,e,n,i,o,r){const s=e+(i-e)/2,l=n+(o-n)/2;let c=s-e,h=l-n;const u=Math.sqrt(c*c+h*h);c/=u,h/=u;const d=50*Math.ceil(t/2);return t%2==0?new a.Point(s+d/2*h,l-d/2*c):new a.Point(s-d/2*h,l+d/2*c)}canvasArrow(t,e,n,i,o){const r=Math.atan2(i-e,o-n)+Math.PI;t.moveTo(e-this.arrowWidth*Math.sin(r-Math.PI/10),n-this.arrowWidth*Math.cos(r-Math.PI/10)),t.lineTo(e,n),t.lineTo(e-this.arrowWidth*Math.sin(r+Math.PI/10),n-this.arrowWidth*Math.cos(r+Math.PI/10))}}var U,j,q=n(8060),z=n(3629);async function Y(t,e,i,o,s,a,l){let c=await async function(t,e,i,o,s,a,l){if(!a.distanceFnArgs)throw new Error("options.distanceFnArgs must be defined");if(t.length!==e.length||t.length!==a.distanceFnArgs.length||t.length!==o.length)throw new Error("data, metrics and options and weights must have the same length");return new Promise((function(c,h){const u=new Worker(new URL(n.p+n.u(234),n.b));u.postMessage({columnsData:t,distanceMetrics:e,method:i,options:a,weights:o,aggregationMethod:s});const d=r.events.onCustomEvent(q.S).subscribe((()=>{try{u?.terminate()}finally{d.unsubscribe()}}));u.onmessage=({data:{error:t,embedding:e,epochNum:n,epochsLength:i}})=>{O(n)||O(i)?(d.unsubscribe(),t?h(t):c(e),setTimeout((()=>u.terminate()),100)):l&&l(n,i,e)}}))}(t,i,e,o,s,a,l);return c=c.map((t=>(0,z.S8)(t))),c}(j=U||(U={})).EUCLIDEAN="EUCLIDEAN",j.MANHATTAN="MANHATTAN";const K={[U.EUCLIDEAN]:function(t){return`\n var sum = 0.0;\n for (var i = 0u; i < ${t}; i = i + 1u) {\n sum = sum + distances[i] * distances[i] * computeInfo.weights[i] * computeInfo.weights[i];\n }\n return sqrt(sum);\n `},[U.MANHATTAN]:function(t){return`\n var sum = 0.0;\n for (var i = 0u; i < ${t}; i = i + 1u) {\n sum = sum + abs(distances[i]) * computeInfo.weights[i];\n }\n return sum;\n `}};var Z,X;(X=Z||(Z={})).HAMMING="Hamming",X.EUCLIDEAN="Euclidean",X.VECTOR_COSINE="Vector Cosine",X.MANHATTAN="Manhattan",X.TANIMOTO="Tanimoto",X.LEVENSTEIN="Levenshtein",X.NEEDLEMAN_WUNSCH="Needlemann-Wunsch",X.MONOMER_CHEMICAL_DISTANCE="Monomer chemical distance",X.SOKAL="Sokal",X.COSINE="Cosine",X.ASYMMETRIC="Asymmetric",X.Difference="Difference",X.OneHot="One-Hot";const J={[Z.HAMMING]:function(t,e){return`\n let aLength: u32 = computeInfo.entrySizes[${e}][aIndex];\n let bLength: u32 = computeInfo.entrySizes[${e}][bIndex];\n let maxLength: u32 = max(aLength, bLength);\n let minLength: u32 = min(aLength, bLength);\n let sizeDiff: u32 = maxLength - minLength;\n \n let maxIntDistance = ceil(maxDistance * f32(maxLength)) - f32(sizeDiff);\n\n var diff: f32 = 0.0;\n for (var i = 0u; i < ${t}; i = i + 1u) {\n diff = diff + f32(a[i] != b[i]);\n if (diff > maxIntDistance) {\n return 1.0;\n }\n }\n diff += f32(sizeDiff);\n return diff / ${t};\n `},[Z.EUCLIDEAN]:function(t,e){return`\n var dist: f32 = 0.0;\n for (var i = 0u; i < ${t}; i = i + 1u) {\n dist = dist + f32(a[i] - b[i]) * f32(a[i] - b[i]);\n }\n return sqrt(dist);\n `},[Z.MANHATTAN]:function(t,e){return`\n var dist: f32 = 0.0;\n for (var i = 0u; i < ${t}; i = i + 1u) {\n dist = dist + abs(f32(a[i] - b[i]));\n }\n return dist;\n `},[Z.VECTOR_COSINE]:function(t,e){return`\n var dist: f32 = 0.0;\n var productSum: f32 = 0.0;\n var aSquareSum: f32 = 0.0;\n var bSquareSum: f32 = 0.0;\n for (var i = 0u; i < ${t}; i = i + 1u) {\n productSum = productSum + f32(a[i] * b[i]);\n aSquareSum = aSquareSum + f32(a[i] * a[i]);\n bSquareSum = bSquareSum + f32(b[i] * b[i]);\n }\n var sim = productSum / (sqrt(aSquareSum) * sqrt(bSquareSum));\n return (1.0 - sim) / 2.0;\n `},[Z.TANIMOTO]:function(t,e){return`\n var onBitsa: u32 = 0u;\n var onBitsb: u32 = 0u;\n for (var i = 0u; i < ${t}u; i = i + 1u) {\n onBitsa = onBitsa + countOneBits(a[i]);\n onBitsb = onBitsb + countOneBits(b[i]);\n }\n\n if (onBitsa == 0u && onBitsb == 0u) {\n return 0.0;\n }\n\n let totalOnBits = onBitsa + onBitsb;\n var commonBits: u32 = 0u;\n for (var i = 0u; i < ${t}u; i = i + 1u) {\n commonBits = commonBits + countOneBits(a[i] & b[i]);\n }\n\n return 1.0 - f32(commonBits) / f32(totalOnBits - commonBits);\n `},[Z.LEVENSTEIN]:function(t,e){return`\n let aLength: u32 = computeInfo.entrySizes[${e}][aIndex];\n let bLength: u32 = computeInfo.entrySizes[${e}][bIndex];\n let maxLength: u32 = max(aLength, bLength);\n let minLength: u32 = min(aLength, bLength);\n\n let maxIntDistance = ceil(maxDistance * f32(maxLength));\n\n // we will store two arrays as matrix and swap the working indices per pass.\n // this way we can reduce memory usage per computation to just O(aLength)\n // the grid will have aLength + 1 columns and bLength + 1 rows\n // this will be guaranteed by iteration, but the array sizes must be known at compile time, so we will use a fixed size of maxArraySize\n var dynamicPassMat: array<array<f32, ${t+1}u>, 2>; // initialize to 0\n \n var prevIndex: u32 = 0;\n var curIndex: u32 = 1; // we will swap these indices per pass\n\n // initialize the first row\n for (var i = 0u; i <= aLength; i = i + 1u) {\n dynamicPassMat[prevIndex][i] = f32(i);\n }\n\n // iterate over the rows\n for (var i = 1u; i <= bLength; i = i + 1u) {\n dynamicPassMat[curIndex][0] = f32(i);\n var minEntry: f32 = f32(maxLength);\n let prevRow = &dynamicPassMat[prevIndex];\n let curRow = &dynamicPassMat[curIndex];\n let bMon = u32(b[i - 1]);\n for (var j = 1u; j <= aLength; j = j + 1u) {\n var cost: f32 = f32(a[j - 1] != bMon);\n var res: f32 = min(\n min(\n (*prevRow)[j] + 1.0, // deletion\n (*curRow)[j - 1] + 1.0, // insertion\n ),\n (*prevRow)[j - 1] + cost // substitution\n );\n (*curRow)[j] = res;\n if (res < minEntry) {\n minEntry = res;\n }\n }\n // swap the indices\n let temp: u32 = prevIndex;\n prevIndex = curIndex;\n curIndex = temp;\n if (minEntry > maxIntDistance) {\n return 1.0;\n }\n }\n\n return dynamicPassMat[prevIndex][aLength] / f32(maxLength);\n `},[Z.NEEDLEMAN_WUNSCH]:function(t,e){return`\n let aLength: u32 = computeInfo.entrySizes[${e}][aIndex];\n let bLength: u32 = computeInfo.entrySizes[${e}][bIndex];\n let maxLength: u32 = max(aLength, bLength);\n let minLength: u32 = min(aLength, bLength);\n \n let maxIntDistance = ceil(maxDistance * f32(maxLength));\n // we will store two arrays as matrix and swap the working indices per pass.\n // this way we can reduce memory usage per computation to just O(aLength)\n // the grid will have aLength + 1 columns and bLength + 1 rows\n // this will be guaranteed by iteration, but the array sizes must be known at compile time, so we will use a fixed size of maxArraySize\n var dynamicPassMat: array<array<f32, ${t+1}u>, 2>; // initialize to 0\n \n // we need to keep track of which operation led to the current cell\n // i.e. whether we came from the left, top or diagonal to assign gap open/gap extend penalty\n var verticalGaps: array<u32, ${t+1}u>;\n var horizontalGaps: array<u32, ${t+1}u>;\n\n let gapOpenPenalty: f32 = suppInfo.gapOpenPenalty${e};\n let gapExtensionPenalty: f32 = suppInfo.gapExtensionPenalty${e};\n var prevIndex: u32 = 0;\n var curIndex: u32 = 1; // we will swap these indices per pass\n // initialize the first row\n for (var i = 0u; i <= aLength; i = i + 1u) {\n dynamicPassMat[prevIndex][i] = gapExtensionPenalty + f32(i - 1) * gapExtensionPenalty; // accounting for the fact that left and right gaps are less costly\n dynamicPassMat[curIndex][i] = 0.0;\n }\n dynamicPassMat[0][0] = 0.0;\n\n let simMatrix = &suppInfo.similarityMatrix${e}; // using pointers make things faster\n // iterate over the rows\n for (var i = 1u; i <= bLength; i = i + 1u) {\n let prevRow = &dynamicPassMat[prevIndex];\n let curRow = &dynamicPassMat[curIndex];\n (*curRow)[0] = gapExtensionPenalty + f32(i - 1) * gapExtensionPenalty;\n var minEntry: f32 = f32(maxLength);\n let monB = u32(b[i - 1]);\n for (var j = 1u; j <= aLength; j = j + 1u) {\n let monA = u32(a[j - 1]);\n \n let cost: f32 = (*prevRow)[j - 1] + 1f - (*simMatrix)[monA][monB];\n var top = (*prevRow)[j]; // deletion\n if (verticalGaps[j] > 0 || i == 1 || i == bLength) {\n top = top + gapExtensionPenalty;\n } else {\n top = top + gapOpenPenalty;\n }\n var left = (*curRow)[j - 1]; // insertion\n if (horizontalGaps[j - 1] > 0 || j == 1 || j == aLength) {\n left = left + gapExtensionPenalty;\n } else {\n left = left + gapOpenPenalty;\n }\n var res: f32 = min(\n min(\n top, // deletion\n left, // insertion\n ),\n cost // substitution\n );\n (*curRow)[j] = res;\n if (res < minEntry) {\n minEntry = res;\n }\n // update the horizontal and vertical gaps\n if (res == cost) {\n verticalGaps[j] = 0;\n horizontalGaps[j] = 0;\n } else if (res == left) {\n verticalGaps[j] = 0;\n horizontalGaps[j] = 1;\n } else {\n verticalGaps[j] = 1;\n horizontalGaps[j] = 0;\n }\n }\n // swap the indices\n let temp: u32 = prevIndex;\n prevIndex = curIndex;\n curIndex = temp;\n if (minEntry > maxIntDistance) {\n return 1.0;\n }\n }\n return dynamicPassMat[prevIndex][aLength] / f32(minLength);\n\n `},[Z.MONOMER_CHEMICAL_DISTANCE]:function(t,e){return`\n let aLength: u32 = computeInfo.entrySizes[${e}][aIndex];\n let bLength: u32 = computeInfo.entrySizes[${e}][bIndex];\n let maxLength: u32 = max(aLength, bLength);\n let minLength: u32 = min(aLength, bLength);\n let sizeDiff: u32 = maxLength - minLength;\n \n let maxIntDistance = ceil(maxDistance * f32(maxLength)) - f32(sizeDiff);\n\n let simMatrix = &(suppInfo.similarityMatrix${e}); // using pointers make things faster\n var diff: f32 = 0.0;\n for (var i = 0u; i < ${t}; i = i + 1u) {\n diff = diff + 1.0 - (*simMatrix)[u32(a[i])][u32(b[i])];\n if (diff > maxIntDistance) {\n return 1.0;\n }\n }\n diff += f32(sizeDiff);\n return diff / ${t};\n `},[Z.SOKAL]:function(t,e){return`\n var onBitsa: u32 = 0u;\n var onBitsb: u32 = 0u;\n for (var i = 0u; i < ${t}u; i = i + 1u) {\n onBitsa = onBitsa + countOneBits(a[i]);\n onBitsb = onBitsb + countOneBits(b[i]);\n }\n let total = onBitsa + onBitsb;\n if (total == 0u) {\n return 1.0;\n }\n var commonBits: u32 = 0u;\n for (var i = 0u; i < ${t}u; i = i + 1u) {\n commonBits = commonBits + countOneBits(a[i] & b[i]);\n }\n return 1.0 - f32(commonBits) / f32(total * 2 - commonBits * 3);\n `},[Z.COSINE]:function(t,e){return`\n var onBitsa: u32 = 0u;\n var onBitsb: u32 = 0u;\n for (var i = 0u; i < ${t}u; i = i + 1u) {\n onBitsa = onBitsa + countOneBits(a[i]);\n onBitsb = onBitsb + countOneBits(b[i]);\n }\n let total = onBitsa * onBitsb; // p.s. here total is taken by multiplying\n if (total == 0u) {\n return 1.0;\n }\n var commonBits: u32 = 0u;\n for (var i = 0u; i < ${t}u; i = i + 1u) {\n commonBits = commonBits + countOneBits(a[i] & b[i]);\n }\n return 1.0 - f32(commonBits) / sqrt(f32(total));\n `},[Z.ASYMMETRIC]:function(t,e){return`\n var onBitsa: u32 = 0u;\n var onBitsb: u32 = 0u;\n for (var i = 0u; i < ${t}u; i = i + 1u) {\n onBitsa = onBitsa + countOneBits(a[i]);\n onBitsb = onBitsb + countOneBits(b[i]);\n }\n let min = min(onBitsa, onBitsb);\n if (min == 0u) {\n return 1.0;\n }\n var commonBits: u32 = 0u;\n for (var i = 0u; i < ${t}u; i = i + 1u) {\n commonBits = commonBits + countOneBits(a[i] & b[i]);\n }\n return 1.0 - f32(commonBits) / f32(min);\n `},[Z.Difference]:function(t,e){return`\n let range = suppInfo.range${e};\n return f32(abs(f32(a[0]) - f32(b[0])) / range);\n `},[Z.OneHot]:function(t,e){return`\n let aLength: u32 = computeInfo.entrySizes[${e}][aIndex];\n let bLength: u32 = computeInfo.entrySizes[${e}][bIndex];\n if (aLength != bLength) {\n return 1.0;\n }\n for (var i = 0u; i < aLength; i = i + 1u) {\n if(a[i] != b[i]) {\n return 1.0;\n }\n }\n return 0.0;\n `}},Q={[Z.HAMMING]:t=>Math.ceil(t/30),[Z.EUCLIDEAN]:t=>Math.ceil(t/30),[Z.MANHATTAN]:t=>Math.ceil(t/30),[Z.TANIMOTO]:t=>Math.ceil(t/30),[Z.SOKAL]:t=>Math.ceil(t/30),[Z.COSINE]:t=>Math.ceil(t/30),[Z.ASYMMETRIC]:t=>Math.ceil(t/30),[Z.LEVENSTEIN]:t=>Math.ceil(t*t/60),[Z.NEEDLEMAN_WUNSCH]:t=>Math.ceil(t*t/60),[Z.MONOMER_CHEMICAL_DISTANCE]:t=>Math.ceil(t/25),[Z.Difference]:t=>1,[Z.OneHot]:t=>Math.ceil(t/40),[Z.VECTOR_COSINE]:t=>Math.ceil(t/30)},tt={STRING:new Set([Z.HAMMING,Z.LEVENSTEIN,Z.NEEDLEMAN_WUNSCH,Z.MONOMER_CHEMICAL_DISTANCE,Z.OneHot]),UINT32ARRAY:new Set([Z.HAMMING,Z.EUCLIDEAN,Z.MANHATTAN,Z.MONOMER_CHEMICAL_DISTANCE,Z.LEVENSTEIN,Z.NEEDLEMAN_WUNSCH,Z.TANIMOTO,Z.COSINE,Z.VECTOR_COSINE,Z.SOKAL,Z.ASYMMETRIC,Z.OneHot,Z.Difference]),INT32ARRAY:new Set([Z.EUCLIDEAN,Z.MANHATTAN,Z.OneHot,Z.Difference,Z.VECTOR_COSINE]),FLOAT32ARRAY:new Set([Z.EUCLIDEAN,Z.MANHATTAN,Z.Difference,Z.VECTOR_COSINE]),NUMBER:new Set([Z.EUCLIDEAN,Z.MANHATTAN,Z.Difference]),BITARRAY:new Set([Z.TANIMOTO,Z.COSINE,Z.SOKAL,Z.ASYMMETRIC])};var et=function(t,e,n,i){return new(n||(n=Promise))((function(o,r){function s(t){try{l(i.next(t))}catch(t){r(t)}}function a(t){try{l(i.throw(t))}catch(t){r(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,a)}l((i=i.apply(t,e||[])).next())}))};function nt(t,e,n,i){return t.map(((t,i)=>`\n fn distanceScript${i}(aIndex: u32, bIndex: u32) -> f32 {\n let a = computeInfo.data${i}[aIndex];\n let b = computeInfo.data${i}[bIndex];\n let maxDistance: f32 = ${n};\n ${J[t](e[i],i)}\n }\n `)).join("\n")+"\n"+`\n fn combinedDistance(aIndex: u32, bIndex: u32) -> f32 {\n var distances: array<f32, ${t.length}>;\n ${t.map(((t,e)=>`distances[${e}] = distanceScript${e}(aIndex, bIndex);`)).join("\n")}\n ${K[i](t.length)}\n }\n \n `}var it=n(1991),ot=n.n(it);let rt=0;const st="cliffsDf",at=new h.Subject,lt="Δ activity",ct="SALI",ht="Similarity",ut="line index",dt=["From","To"],pt="filterCliffs";async function mt(t,e,i,o,l,c,h,u,d,p,m,f,g,y,b,v,w){rt++;const C=c/100;let A,S=!1;const x=f.inputs,M=await f.apply({[x[0].name]:e,[x[1].name]:h,...d.preprocessingFuncArgs??{}});let I=[];if(u===N){const e=await function(t,e,i,o,r,s,a=10,l=!1,c=2){const h=new Worker(new URL(n.p+n.u(980),n.b));let u;return h.postMessage({data:t,threshold:e,weights:i,aggregationMethod:o,distanceFns:r,distanceFnArgs:s,maxIterations:a,useWebGPU:l,inflate:c}),{promise:new Promise(((t,e)=>{u=t,h.onmessage=e=>{setTimeout((()=>h.terminate()),100),t(e.data.res)},h.onerror=t=>{setTimeout((()=>h.terminate()),100),e(t)}})),terminate:()=>{try{u(null),h.terminate()}catch(t){console.error(t)}}}}([M.entries],c,[1],"MANHATTAN",[h],[M.options??{}],d?.maxIterations??5,d.useWebGPU??!1).promise;t.columns.addNewInt(t.columns.getUnusedName("MCL Cluster")).init((t=>e.clusters[t])),I=[e.embedX,e.embedY]}else I=await Y([M.entries],u,[h],[1],"MANHATTAN",{...d,distanceFnArgs:[M.options??{}]});if(I.length!==i.length)throw new Error("Number of axes names should be equal to number of embedding dimensions");for(let e=0;e<I.length;++e)t.columns.addNewFloat(i[e]).init((t=>I[e][t]));let L=null;if(d.useWebGPU)try{L=await function(t,e=.8,n,i,o,r){return et(this,void 0,void 0,(function*(){const s=yield function(){return E(this,void 0,void 0,(function*(){if(!navigator.gpu)return console.error("WebGPU is not supported in this browser"),null;if(!T&&(T=yield navigator.gpu.requestAdapter({powerPreference:"high-performance"}),null==T))return null;let t=!1;if(_&&(_.lost.then((()=>{t=!0})),yield new Promise((t=>setTimeout(t,10)))),!_||t){const t=1e9,e=T.limits,n=e.maxBufferSize,i=e.maxStorageBufferBindingSize;try{return _=yield T.requestDevice({requiredLimits:{maxBufferSize:Math.min(n,t),maxStorageBufferBindingSize:Math.min(i,t)}}),_}catch(t){return console.error("Failed to create device with required limits",t),_=yield T.requestDevice(),_}}return _}))}();if(!s)return null;const a=Object.values(Z);if(n.some((t=>!a.includes(t))))throw new Error("Invalid distance metrics provided: "+n.join(", "));if(!Object.values(U).includes(i))throw new Error("Invalid aggregation function provided: "+i);const l=1-e;if(r.length!==t.length||r.length!==n.length||r.length!==o.length)throw new Error("Options, weigths and distance functions must be provided for each column");if(t.some((e=>e.length!==t[0].length)))throw new Error("All entry lists must be the same length");const c=t.length,h=t[0].length,u=t.map(((t,e)=>function(t,e=Z.HAMMING,n,i={gapOpenPenalty:1,gapExtensionPenalty:.6}){var o,r;let s=null;const a=t.some((t=>"string"==typeof t))?(s="STRING",t.map((t=>new Uint32Array(t.split("").map((t=>t.charCodeAt(0))))))):t.some((t=>"number"==typeof t))?(s="NUMBER",t.map((t=>new Float32Array([t])))):"object"==typeof t[0]&&t.some((t=>"_data"in t&&"_length"in t))?(s="BITARRAY",t.map((t=>t._data))):t.some((t=>t instanceof Float32Array))?(s="FLOAT32ARRAY",t):t.some((t=>t instanceof Uint32Array))?(s="UINT32ARRAY",t):t.some((t=>t instanceof Int32Array))?(s="INT32ARRAY",t):void 0;if(!a||!s)throw new Error("Invalid entry type, could not determine entry type from input list");const l=a[0]instanceof Int32Array?"INT32ARRAY":a[0]instanceof Float32Array?"FLOAT32ARRAY":"UINT32ARRAY",c=new Uint32Array(a.map((t=>t.length)));if(!tt[s]||!tt[s].has(e))throw new Error(`Distance metric '${e}' not supported for entry type '${s}'`);const h=c.reduce(((t,e)=>Math.max(t,e)),0),u=Q[e](h),d="INT32ARRAY"===l?Int32Array:"FLOAT32ARRAY"===l?Float32Array:Uint32Array,p=new d(a.length*h);a.forEach(((t,e)=>{p.set(t,e*h)}));let m="",f=0,g="FLOAT32ARRAY",y=null;if(e===Z.NEEDLEMAN_WUNSCH||e===Z.MONOMER_CHEMICAL_DISTANCE){let t=i.scoringMatrix&&i.alphabetIndexes?Object.keys(i.alphabetIndexes).reduce(((t,e)=>Math.max(t,e.charCodeAt(0))),0):-1;if(!i.alphabetIndexes||!i.scoringMatrix){for(let e=0;e<p.length;e++)p[e]>t&&(t=p[e]);i.scoringMatrix=new Array(t+1).fill(null).map((()=>new Array(t+1).fill(0))),i.alphabetIndexes={};for(let t=0;t<i.scoringMatrix.length;t++)i.scoringMatrix[t][t]=1,i.alphabetIndexes[String.fromCharCode(t)]=t}const e=(t+1)*(t+1),s=new Array(t+1).fill(null).map((()=>new Float32Array(t+1)));for(let e=0;e<t+1;e++)s[e][e]=1;const a=i.alphabetIndexes;for(const t of Object.keys(a))for(const e of Object.keys(a))t!==e&&(s[t.charCodeAt(0)][e.charCodeAt(0)]=i.scoringMatrix[a[t]][a[e]]);f=2+e,g="FLOAT32ARRAY",y=new Float32Array(f),y[0]=null!==(o=i.gapOpenPenalty)&&void 0!==o?o:1,y[1]=null!==(r=i.gapExtensionPenalty)&&void 0!==r?r:.6;let l=2;for(let t=0;t<s.length;t++)y.set(s[t],l),l+=s[t].length;m=`\n gapOpenPenalty${n}: f32,\n gapExtensionPenalty${n}: f32,\n similarityMatrix${n}: array<array<f32, ${t+1}>, ${t+1}>`}else if(e===Z.Difference){if(!i.range||"number"!=typeof i.range||i.range<=0){const t=p.reduce(((t,e)=>Math.min(t,e)),p[0]),e=p.reduce(((t,e)=>Math.max(t,e)),p[0]);i.range=e-t}i.range<=0&&(i.range=1),f=1,g="FLOAT32ARRAY",y=new Float32Array([i.range]),m=`\n range${n}: f32`}const b=p instanceof Int32Array?"i32":p instanceof Float32Array?"f32":"u32",v=`data${n}: array<array<${b}, ${h}>, ${a.length}>`;return{flatSourceArray:p,sourceArraySize:p.length,maxEntryLen:h,arraySizes:c,complexity:u,suppInfoBuffer:y,suppInfoSize:f,suppInfoType:g,suppInfoStructWgsl:m,entryType:s,dataTypeWGSL:b,dataStructWgsl:v,EncodedArrayConstructor:d}}(t,n[e],e,r[e])));if(0===c)throw new Error("No columns provided. Please provide at least one column of data.");1===c&&(i=U.MANHATTAN);let d=u.map((t=>t.suppInfoStructWgsl)).filter((t=>!!t&&""!=t)).join(",\n"),p=!1;d&&""!=d.trim()||(p=!0,d="\ndummy: f32\n");const m=u.map((t=>t.dataStructWgsl)).filter((t=>!!t&&""!=t)).join(",\n"),f=new Uint32Array(c*h);u.forEach(((t,e)=>{f.set(t.arraySizes,e*h)}));const g=1e4,y=100,b=u.reduce(((t,e)=>t+e.complexity),0),v=Math.ceil(6e3/b),w=Math.ceil(Math.sqrt(Math.ceil(100))),C=10*w,A=h*(h-1)/2,S=Math.ceil(A/g),x=s.createShaderModule({label:"Sparse matrix compute shader",code:`\n // each thread will perform 100 iterations at one time, comparing 100 pairs of entries.\n // in total, each thread will perform at most ${S} comparisons.\n // first is the result struct, containing is, js, and distances. each array with length of 100,\n // and also integer for how many pairs were found to be below threshold.\n struct SparseResult {\n i: array<array<u32, 100>, 10000>,\n j: array<array<u32, 100>, 10000>,\n distances: array<array<f32, 100>, 10000>,\n found: array<u32, 10000>,\n done: array<u32, 10000>\n }\n // struct for the data\n struct ComputeInfo {\n // start at cols and rows, and end at cols and rows for each thread, these will be calculated on cpu and passed to gpu.\n startAtCols: array<u32, 10000>,\n startAtRows: array<u32, 10000>,\n endAtCols: array<u32, 10000>,\n endAtRows: array<u32, 10000>,\n\n // the ACTUALLY sizes of each entry\n entrySizes: array<array<u32, ${h}>, ${c}>,\n // the weights for each entry\n weights: array<f32, ${c}>,\n // the data for each entry\n ${m} // an example of the dataWgsl would be:\n //data0: array<array<u32,20>,100>,\n //data1: array<array<u32,20>,100>\n }\n\n // struct for the supplementary information\n struct SuppInfo {\n // struct containing all the supplementary info, like scoring matrix, alphabet indexes, range, etc.\n ${d}\n };\n\n @group(0) @binding(0) var<storage, read_write> computeInfo: ComputeInfo;\n @group(0) @binding(1) var<storage, read_write> suppInfo: SuppInfo;\n @group(0) @binding(2) var<storage, read_write> results: SparseResult;\n @compute @workgroup_size(10, 10) fn calcSparseMatrix(\n @builtin(global_invocation_id) id: vec3<u32>\n ) {\n ${p?"let otherDummy = suppInfo.dummy * 2;":""} // just to make sure that the suppInfo is not optimized out\n let threadCol = id.x;\n let threadRow = id.y;\n let linearIndex = threadRow * ${C} + threadCol;\n if (linearIndex >= 10000) {\n return; // if we are out of bounds, return\n } \n var startAtCol: u32 = computeInfo.startAtCols[linearIndex];\n var startAtRow: u32 = computeInfo.startAtRows[linearIndex];\n let endAtCol: u32 = min(computeInfo.endAtCols[linearIndex], ${h}u);\n let endAtRow: u32 = min(computeInfo.endAtRows[linearIndex], ${h}u);\n let is = &results.i[linearIndex];\n let js = &results.j[linearIndex];\n let distances = &results.distances[linearIndex];\n results.found[linearIndex] = 0; // initialize the found counter\n var found: u32 = 0;\n if (results.done[linearIndex] > 0) {\n return; // if we are done, return\n }\n for (var i = 0; i < ${v}; i++) {\n if (startAtCol >= endAtCol && startAtRow >= endAtRow) {\n results.done[linearIndex] = 1;\n break;\n }\n if (found >= 100) {\n break;\n }\n let dist = combinedDistance(startAtCol, startAtRow);\n if (dist <= ${l}) {\n (*is)[found] = startAtCol;\n (*js)[found] = startAtRow;\n (*distances)[found] = dist;\n found = found + 1;\n }\n startAtCol = startAtCol + 1;\n if (startAtCol >= ${h}u) {\n startAtRow += 1;\n startAtCol = startAtRow + 1;\n }\n }\n results.found[linearIndex] = found;\n // update the startAtCols and startAtRows\n computeInfo.startAtCols[linearIndex] = startAtCol;\n computeInfo.startAtRows[linearIndex] = startAtRow;\n\n }\n\n // this will generate the distance script for each distance metric and then combine them into one\n ${nt(n,u.map((t=>t.maxEntryLen)),l,i)}\n\n\n `}),M=s.createComputePipeline({label:"sparse matrix compute pipeline",layout:"auto",compute:{module:x,entryPoint:"calcSparseMatrix"}}),I=new Uint32Array(g),L=new Uint32Array(g),N=new Uint32Array(g),P=new Uint32Array(g),$=Math.floor(A/g);let R=0,k=1;console.time("GPUthreadStarts");for(let t=0;t<g;t++){const e=9999===t?A-1:(t+1)*$,n=h-2-Math.floor(Math.sqrt(-8*e+4*h*(h-1)-7)/2-.5),i=e-h*n+Math.floor((n+1)*(n+2)/2);I[t]=k,L[t]=R,N[t]=i,P[t]=n,R=n,k=i}console.timeEnd("GPUthreadStarts");const O=4e4+h*c+c+u.reduce(((t,e)=>t+e.sourceArraySize),0),H=u.reduce(((t,e)=>t+e.suppInfoSize),0),G=1e6,F=O*Uint32Array.BYTES_PER_ELEMENT;let D=F;const B=15&F;0!==B&&(D+=16-B);const V=s.createBuffer({label:"compute info buffer",size:D,usage:GPUBufferUsage.STORAGE|GPUBufferUsage.COPY_SRC|GPUBufferUsage.COPY_DST,mappedAtCreation:!0}),W=V.getMappedRange();let j=0;new Uint32Array(W,j,g).set(I),j+=g*Uint32Array.BYTES_PER_ELEMENT,new Uint32Array(W,j,g).set(L),j+=g*Uint32Array.BYTES_PER_ELEMENT,new Uint32Array(W,j,g).set(N),j+=g*Uint32Array.BYTES_PER_ELEMENT,new Uint32Array(W,j,g).set(P),j+=g*Uint32Array.BYTES_PER_ELEMENT,new Uint32Array(W,j,f.length).set(f),j+=f.length*Uint32Array.BYTES_PER_ELEMENT,new Float32Array(W,j,c).set(o),j+=c*Float32Array.BYTES_PER_ELEMENT;for(const t of u){const e=t.EncodedArrayConstructor,n=t.sourceArraySize;new e(W,j,n).set(t.flatSourceArray),j+=n*e.BYTES_PER_ELEMENT}V.unmap();const q=H*Uint32Array.BYTES_PER_ELEMENT;let z=q;const Y=15&q;0!==Y&&(z+=16-Y),z=Math.max(z,16);const K=s.createBuffer({label:"supp info buffer",size:z,usage:GPUBufferUsage.STORAGE|GPUBufferUsage.COPY_SRC|GPUBufferUsage.COPY_DST,mappedAtCreation:!0}),X=K.getMappedRange();let J=0;for(const t of u)t.suppInfoBuffer&&t.suppInfoBuffer.byteLength>0&&t.suppInfoSize>0&&(new("UINT32ARRAY"===t.suppInfoType?Uint32Array:Float32Array)(X,J,t.suppInfoBuffer.length).set(t.suppInfoBuffer),J+=t.suppInfoBuffer.byteLength);0===J&&new Uint32Array(X,0,4).set([1,1,1,1]),K.unmap();const et=302e4*Uint32Array.BYTES_PER_ELEMENT;let it=et;const ot=15&et;0!==ot&&(it+=16-ot);const rt=s.createBuffer({label:"results buffer",size:it,usage:GPUBufferUsage.STORAGE|GPUBufferUsage.COPY_SRC}),st=s.createBindGroup({label:"bindGroup for sparse matrix buffer",layout:M.getBindGroupLayout(0),entries:[{binding:0,resource:{buffer:V}},{binding:1,resource:{buffer:K}},{binding:2,resource:{buffer:rt}}]}),at=s.createBuffer({label:"results out buffer",size:rt.size,usage:GPUBufferUsage.MAP_READ|GPUBufferUsage.COPY_DST}),lt=[],ct=[],ht=[];let ut=!1;for(;!ut;){const t=s.createCommandEncoder({label:"distance encoder"}),e=t.beginComputePass({label:"distance compute pass"});e.setPipeline(M),e.setBindGroup(0,st),e.dispatchWorkgroups(w,w),e.end(),t.copyBufferToBuffer(rt,0,at,0,at.size);const n=t.finish();s.queue.submit([n]),yield s.queue.onSubmittedWorkDone(),yield at.mapAsync(GPUMapMode.READ);const i=at.getMappedRange();let o=0;const r=new Uint32Array(i,o,G);o+=G*Uint32Array.BYTES_PER_ELEMENT;const a=new Uint32Array(i,o,G);o+=G*Uint32Array.BYTES_PER_ELEMENT;const l=new Float32Array(i,o,G);o+=G*Float32Array.BYTES_PER_ELEMENT;const c=new Uint32Array(i,o,g);o+=g*Uint32Array.BYTES_PER_ELEMENT,ut=new Uint32Array(i,o,g).every((t=>1===t));const h=c.reduce(((t,e)=>t+e),0),u=new Uint32Array(h),d=new Uint32Array(h),p=new Float32Array(h);let m=0;for(let t=0;t<c.length;t++){const e=c[t];0!==e&&(u.set(r.subarray(t*y,t*y+e),m),d.set(a.subarray(t*y,t*y+e),m),p.set(l.subarray(t*y,t*y+e),m),m+=e)}lt.push(u),ct.push(d),ht.push(p),at.unmap()}const dt=lt.reduce(((t,e)=>t+e.length),0),pt=new Uint32Array(dt),mt=new Uint32Array(dt),ft=new Float32Array(dt);let gt=0;for(let t=0;t<lt.length;t++)pt.set(lt[t],gt),mt.set(ct[t],gt),ft.set(ht[t],gt),gt+=lt[t].length;return V.destroy(),K.destroy(),rt.destroy(),at.destroy(),{i:pt,j:mt,distance:ft}}))}([M.entries],C,[h],U.MANHATTAN,[1],[M.options??{}])}catch(t){console.error(t)}L||(d.useWebGPU&&console.error("WebGPU sparse matrix calculation failed, falling back to CPU implementation"),L=await(new F).calc(M.entries,h,C,M.options));const P=await async function(t,e){const n=t.distance.map(((n,i)=>{const o=Math.abs(e.get(t.i[i])-e.get(t.j[i]));return 0!=n?o/n:1/0})),i=t.distance.map((t=>1-t)),o=t.i,r=t.j,s=a.BitSet.create(e.length);return t.distance.forEach(((e,n)=>{s.set(t.i[n],!0),s.set(t.j[n],!0)})),{simVals:i,saliVals:n,n1:o,n2:r,cliffsBitSet:s}}(L,l),$=function(t,e,n,i,o,r,s){const l=new Array(t).fill(0);for(let t=0;t!=i.length;++t)n[t]!=1/0&&(s.get(i[t])>s.get(o[t])?l[i[t]]+=n[t]:l[o[t]]+=n[t]);return a.Column.fromList("double",e,l)}(e.length,`sali_${i[0].substring(i[0].lastIndexOf("_"))}`,P.saliVals,P.n1,P.n2,0,l);t.columns.add($);const k=P.cliffsBitSet,O=function(t){const e=t.filter((t=>t!==1/0)),n=e.reduce(((t,e)=>Math.min(t,e)),Number.MAX_VALUE);return{max:e.reduce(((t,e)=>Math.max(t,e)),n),min:n}}(P.saliVals),H=.8/(O.max-O.min),G=r.shell.getTableView(t.name),B=G.addViewer(a.VIEWER.SCATTER_PLOT,{xColumnName:i[0],yColumnName:i[1],size:$.name,color:l.name,showXSelector:!1,showYSelector:!1,showSizeSelector:!1,showColorSelector:!1,markerMinSize:5,markerMaxSize:25,title:o}),V=function(t,e,n,i,o,r,s,l){const c={from:new Uint32Array(e.n1.length),to:new Uint32Array(e.n1.length),opacities:new Float32Array(e.n1.length),colors:new Array(e.n1.length),widths:new Float32Array(e.n1.length)};for(let n=0;n<e.n1.length;n++)c.from[n]=e.n1[n],c.to[n]=e.n2[n],c.opacities[n]=e.saliVals[n]===1/0?1:.2+(e.saliVals[n]-s.min)*l,c.colors[n]=t.selection.get(c.from[n])&&t.selection.get(c.to[n])?"255,255,0":"0,128,0",c.widths[n]=1;const h=a.DataFrame.create(c.from.length);return dt.forEach(((t,e)=>{h.columns.addNewString(t).init((t=>n.get(0===e?c.from[t]:c.to[t]))),function(t,e){Object.keys(e).forEach((n=>{t.tags[n]=e[n]}))}(h.col(t),r),h.col(t).semType=o})),h.columns.addNewFloat(lt).init((t=>Math.abs(i.get(c.from[t])-i.get(c.to[t])))),h.columns.addNewInt(ut).init((t=>t)),h.columns.addNewFloat(ct).init((t=>e.saliVals[t])),h.columns.addNewFloat(ht).init((t=>e.simVals[t])),h.name=`${st}${rt}`,{lines:c,linesDf:h}}(t,P,e,l,p,m,O,H);V.lines.skipMultiLineCalculation=!0,V.linesDf.col(ct).setTag("description","Structure−Activity Landscape Index (activity difference divided by 1 minus similarity)");const j=new W(B,i[0],i[1],V.lines,D.none),q=b?b(V.linesDf,dt).sort([ct],[!1]):V.linesDf.plot.grid().sort([ct],[!1]);q.col(ut)&&(q.col(ut).visible=!1),t.temp[".cliffsDfGrid"]=q;const z=s.button(`${V.linesDf.rowCount} cliffs`,(()=>{const t=ot()(G.viewers).some((t=>t.dataFrame.name===`${st}${rt}`));w&&!t&&G.addViewer(q),G.dockManager.dock(q,"down",null,"Activity cliffs",v??.2)}));z.classList.add("scatter_plot_link","cliffs_grid");const K=s.input.toggle("Show only cliffs",{value:!1,onValueChanged:e=>{e?(B.dataFrame.setTag(pt,i[0]),t.filter.and(k),at.next(i[0])):(B.dataFrame.setTag(pt,""),t.filter.setAll(!0),at.next(""))}});B.root.prepend(s.divH([z,K.root],"cliffs_div")),at.subscribe((t=>{K.enabled=""===t||t===i[0]})),t.onRowsFiltering.subscribe((()=>{K.value&&t.filter.and(P.cliffsBitSet)}));const X=r.events.onViewerClosed.subscribe((t=>{t.args.viewer===B&&(G.dockManager.close(q.root),X.unsubscribe(),G.subs=G.subs.filter((t=>t!==X)))}));return G.subs.push(X),V.linesDf.onCurrentCellChanged.subscribe((()=>{for(let t=0;t<V.linesDf.rowCount;t++)V.lines.widths[t]=t===V.linesDf.currentRowIdx?3:1;j.linesToRender=V.lines;const n=V.linesDf.currentCol&&V.linesDf.currentCol.name===dt[1]?V.lines.to:V.lines.from,o=-1!==V.linesDf.currentRowIdx?V.linesDf.currentRowIdx:null;if(B.dataFrame.currentRowIdx=o?n[o]:-1,null!==o){const n=V.linesDf.currentRowIdx;j.currentLineId=n;const{zoomLeft:a,zoomRight:c,zoomTop:h,zoomBottom:u}=function(t,e,n,i,o,r){const s=Math.abs(n-o),a=Math.abs(i-r),l=t/s,c=e/a,h=Math.min(l,c),u=t/h*5,d=e/h*5,p=(n<o?n:o)+s/2-u/2,m=(i>r?i:r)-a/2+d/2;return{zoomLeft:p,zoomRight:p+u,zoomTop:m,zoomBottom:m-d}}(B.viewport.width,B.viewport.height,B.dataFrame.get(i[0],V.lines.from[n]),B.dataFrame.get(i[1],V.lines.from[n]),B.dataFrame.get(i[0],V.lines.to[n]),B.dataFrame.get(i[1],V.lines.to[n]));B.zoom(a,h,c,u),K.value?t.filter.and(k):!0===K.enabled&&t.filter.setAll(!0),setTimeout((()=>{!function(t,e,n,i,o,a,l,c,h){const u=e.getPane("Cliff Details");s.empty(u.root);const d=h({points:[n,i],lineId:o,df:t,seqCol:a,activityCol:l,sali:c});u.root.append(d),setTimeout((()=>{r.shell.o=e.root}),500)}(t,A,V.lines.from[o],V.lines.to[o],o,e,l,V.linesDf.get(ct,o),y);const n=B.dataFrame.getSortedOrder(G.grid.sortByColumns,G.grid.sortTypes);G.grid.scrollToCell(e.name,n.indexOf(B.dataFrame.currentRowIdx))}),1e3)}})),V.linesDf.onSelectionChanged.subscribe((e=>{setTimeout((()=>(()=>{const e=a.BitSet.create(t.rowCount);for(let t=0;t<V.linesDf.rowCount;t++){const n=V.linesDf.selection.get(t);n&&(e.set(V.lines.from[t],!0),e.set(V.lines.to[t],!0)),V.lines.colors[t]=n?"255,255,0":"0,128,0"}t.selection.copyFrom(e),j.linesToRender=V.lines})()),100)})),t.onSelectionChanged.subscribe((e=>{!1===t.selection.anyTrue&&"number"==typeof e&&(S?S=!1:(t=>{t.selection.setAll(!1);for(let t=0;t<V.lines.colors.length;t++)V.lines.colors[t]="0,128,0";j.linesToRender=V.lines})(q.dataFrame))})),j.lineClicked.subscribe((e=>{if(S=!0,j.currentLineId=e.id,-1!==e.id){const n=V.linesDf.selection.clone();setTimeout((()=>{e.event.ctrlKey?(n.set(e.id,!n.get(e.id)),V.linesDf.selection.copyFrom(n)):(V.linesDf.currentRowIdx!==e.id&&(V.linesDf.currentRowIdx=e.id,t.currentRowIdx=V.lines.from[e.id]),V.linesDf.selection.copyFrom(n));const i=V.linesDf.getSortedOrder(q.sortByColumns,q.sortTypes);q.scrollToCell(dt[0],i.indexOf(e.id))}),500)}})),j.lineHover.pipe((0,R.debounceTime)(500)).subscribe((n=>{-1!==n.id&&-1===t.mouseOverRowIdx&&s.tooltip.show(g({lineId:n.id,points:[V.lines.from[n.id],V.lines.to[n.id]],df:t,seqCol:e,activityCol:l}),n.x,n.y)})),B.addProperty("similarityLimit","double",C),A=function(){const t=s.accordion(),e=s.element("i");return e.className="grok-icon svg-icon svg-view-layout",t.addTitle(s.span([e,s.label("Activity cliffs")])),t.addPane("Cliff Details",(()=>s.divText("Cliff has not been selected")),!0),r.shell.o=t.root,t}(),B}var ft,gt=n(2003),yt=n(3516),bt=n(6718),vt=n(3077),wt=n(439);!function(t){t.IDENTITY="identity",t.SIMILARITY="similarity"}(ft||(ft={}));var Ct=n(9192);class At{constructor(){this.maxIterations={uiName:"Max iterations",value:0,tooltip:"Maximum iterations for MCL process.Default is \n 0 which will construct the clusters with plain sparse matrix. Values greater than 0 will \n perform MCL with the given number of iterations and will result in trans-cluster activity cliff lines."},this.useWebGPU={uiName:"Use WebGPU",value:!1,tooltip:"Use WebGPU for MCL calculation. (Experimental)",type:"boolean"}}}class St extends ${constructor(t={}){super({...t,enableMCL:!0});const e=this.tableInput.value.columns.numericalNoDateTime;this.activitiesInput=s.input.column("Activities",{table:this.tableInput.value,value:a.Utils.firstOrNull(e),filter:t=>Array.from(e).includes(t)}),this.activitiesInputRoot=this.activitiesInput.root,this.similarityInput=s.input.int("Similarity cutoff",{value:80}),this.methodsParams[N]=new At}onTableInputChanged(){if(super.onTableInputChanged(),this.activitiesInputRoot){s.empty(this.activitiesInputRoot);const t=this.tableInput.value.columns.numerical;this.activitiesInput=s.input.column("Activities",{table:this.tableInput.value,value:a.Utils.firstOrNull(t),filter:e=>Array.from(t).includes(e)}),Array.from(this.activitiesInput.root.children).forEach((t=>this.activitiesInputRoot.append(t)))}}getEditor(){return s.div([this.tableInput,this.colInputRoot,this.preprocessingFunctionInputRoot,this.preprocessingFuncSettingsDiv,this.activitiesInputRoot,this.similarityMetricInputRoot,this.methodInput,this.methodSettingsDiv,this.similarityMetricInputRoot,this.similarityInput],{style:{minWidth:"320px"},classes:"ui-form dim-reduction-dialog-form"})}getParams(){return{...super.getParams(),activities:this.activitiesInput.value,similarityThreshold:this.similarityInput.value}}getInput(){return{...super.getInput(),activityCol:this.activitiesInput.value.name,simThreshold:this.similarityInput.value}}async applyInput(t){super.applyInput(t),this.activitiesInput.value=this.tableInput.value.col(t.activityCol),this.similarityInput.value=t.simThreshold}}var xt,Et,Tt,_t=function(t,e,n,i){return new(n||(n=Promise))((function(o,r){function s(t){try{l(i.next(t))}catch(t){r(t)}}function a(t){try{l(i.throw(t))}catch(t){r(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,a)}l((i=i.apply(t,e||[])).next())}))};function Mt(t){const e=["Embed_X","Embed_Y"],n=t.columns.names().filter((t=>t.includes(e[0]))).length+1;return e.map((t=>`${t}_${n}`))}function It(t,e){return`${e} (${t.length>4?`${t.length} columns`:t.map((t=>t.name)).join(", ")})`}n(5540),function(t){t.ADD="ADD",t.SUB="SUB",t.MULT="MULT"}(xt||(xt={})),function(t){t.SQUARE="SQUARE",t.INVERSE="INVERSE",t.TRANSPOSE="TRANSPOSE",t.NORM="NORM",t.COLUMN_NORM="COLUMN_NORM"}(Et||(Et={})),function(t){t.SCALARMULT="SCALARMULT",t.SCALARADD="SCALARADD",t.SCALARPOW="SCALARPOW"}(Tt||(Tt={})),Object.prototype.toString;var Lt=n(6873),Nt=n(4356),Pt=n(6717),$t=n(4870),Rt=n(3856),kt=n(6882),Ot=n(7278),Ht=n(5553),Gt=n(6642),Ft=n(3599),Dt=n(673),Bt=n(8312);class Vt extends Gt.sD{monomerLib=null;seqHelper=null;constructor(t,e){super(t,e,eo.logger),(0,bt.pj)().then((t=>{this.monomerLib=t.getMonomerLib(),this.dirty=!0,this.gridCol?.grid?.invalidate(),this.subs.push(this.monomerLib.onChanged.subscribe((()=>{this.dirty=!0,this.gridCol?.grid?.invalidate()})))})),(0,Bt.Q)().then((t=>{this.seqHelper=t,this.dirty=!0,this.gridCol?.grid?.invalidate()}))}}var Wt=n(4139);const Ut=new class{constructor(){this.seqHandler="seq-handler",this.notationProvider="seq-handler.notation-provider"}};class jt extends a.SemanticValue{get value(){return this.seqHandler.column.get(this.rowIdx)}set value(t){this.seqHandler.column.set(this.rowIdx,t)}get helm(){return this.seqHandler.getHelm(this.rowIdx)}isDna(){return this.seqHandler.alphabet===wt.YI.DNA}isRna(){return this.seqHandler.alphabet===wt.YI.RNA}isNaturalPeptide(){return this.seqHandler.alphabet===wt.YI.PT}isHelm(){return this.seqHandler.isHelm()}constructor(t,e){if(null==e.column.dataFrame)throw new Error("Attribute .dataFrame is required for SeqValueBase from cell");const n=e.column.dataFrame.cell(t,e.column.name);super(a.SemanticValue.fromTableCell(n).dart),this.rowIdx=t,this.seqHandler=e}getSplitted(){return this.seqHandler.getSplitted(this.rowIdx)}getSplittedWithSugarsAndPhosphates(){if(!this.isDna()&&!this.isRna())return this.getSplitted();const t=(0,Ot.qp)(this.helm),e=[],n=/\(|\)/;for(let i=0;i<t.length;i++){const o=t.getOriginal(i),r=o.split(n).filter((t=>!!t));3===r.length?(e.push(r[0]),e.push(r[1]),e.push(r[2])):e.push(o)}return new Ot.Mu(e,this.seqHandler.defaultGapOriginal)}}const qt=gt.zS;function zt(t){const e=!ot().enumerate(t).some((([e,n])=>e.length>1&&0!=n&&n!=t.length-1)),n=[],i=e?"":" ";for(const[e,o]of ot().enumerate(t)){let r=e;o<t.length&&(r+=`${e?"":"-"}${i}`),n.push(r)}return[n,e]}class Yt extends a.GridCellRenderer{seqHelper;get name(){return"sequence"}get cellType(){return"sequence"}get defaultHeight(){return 30}get defaultWidth(){return 230}hasMouseOver=!1;constructor(){super(),this.seqHelper=eo.seqHelper}getRendererBack(t){const[e,n,i]=(0,Gt.BG)(t);if(n.meta.units!==gt.Hi.CUSTOM)return i.rendererBack;let o=null;return this.seqHelper&&(o=this.seqHelper.getSeqHandler(n).getRendererBack(e,n)),o}onClick(t,e){if(t.cell.column.temp["current-word"]=t.cell.value,t.grid.invalidate(),t.cell.column.meta.units===gt.Hi.CUSTOM){const n=this.getRendererBack(t);n?.onClick(t,e)}}onMouseEnter(t,e){const n=this.getRendererBack(t);n?.onMouseEnter(t,e),this.hasMouseOver=!0}onMouseMove(t,e){const n=this.getRendererBack(t);n?.onMouseMove(t,e)}onMouseLeave(t,e){if((0,Ht.WN)(t,null),t?.grid){const e=t.grid.onEvent("d4-grid-show-tooltip").subscribe((t=>{e.unsubscribe(),this.hasMouseOver&&t.preventDefault()}))}this.hasMouseOver=!1}onDoubleClick(t,e){const n=this.getRendererBack(t);n?.onDoubleClick(t,e)}onKeyDown(t,e){const n=this.getRendererBack(t);n?.onKeyDown(t,e)}onKeyPress(t,e){const n=this.getRendererBack(t);n?.onKeyPress(t,e)}renderInt(t,e,n,i,o,r,s){const[a,l,c]=(0,Gt.BG)(r);if(!l)return;const h=l.temp,u=this.seqHelper.getSeqHandler(l);let d=(eo.properties?eo.properties.maxMonomerLength:4)??50;if(Rt.gp.maxMonomerLength in l.tags){const t=parseInt(l.getTag(Rt.gp.maxMonomerLength));d=!isNaN(t)&&t?t:50}if(".mm.cellRenderer.maxMonomerLength"in h){const t=h[".mm.cellRenderer.maxMonomerLength"];d=!isNaN(t)&&t?t:50}let p=c.rendererBack;p||(p=c.rendererBack=new kt.Jy(a,l,eo.logger,d,(()=>{const{font:t,fontWidth:e}=kt.Jy.getFontSettings(l);return{font:t,fontCharWidth:e,separatorWidth:u.isMsa()?8:0,monomerToShort:qt}})),l.temp[".mm.cellRenderer.settingsChanged"],Dt.s.true,p.init().then((()=>{}))),p.render(t,e,n,i,o,r,s)}render(t,e,n,i,o,r,s){if(r.cell.column?.meta?.units!==gt.Hi.CUSTOM)this.renderInt(t,e,n,i,o,r,s);else{const a=this.getRendererBack(r);a?.render(t,e,n,i,o,r,s)}}}class Kt extends Vt{constructor(t,e){super(t,e)}render(t,e,n,i,o,r,s){const a=window.devicePixelRatio,l=r.grid,c=r.cell.value??"",h=this.tableCol.tags[gt.gp.separator],u=this.tableCol.meta.units;i=(0,kt.U0)(l,t,e,i,a);const[d,p]=c.split("#"),m=this.tableCol.temp[Ut.notationProvider]?.separatorSplitter??(0,Ot.Iv)(u,h),f=m(d),g=m(p),y=ot().count(0).take(f.length).map((t=>f.getCanonical(t))).toArray(),b=ot().count(0).take(g.length).map((t=>g.getCanonical(t))).toArray(),v=this.tableCol.getTag(gt.gp.alphabet);Xt(t,e,n,i,o,y,b,v===gt.YI.RNA||v===gt.YI.DNA?Ft.o.NUCLEOTIDE:Ft.o.AA,this.monomerLib,void 0,void 0)}async awaitRendered(t=1e4,e=`${t} timeout`){return Promise.resolve()}static getOrCreate(t){const[e,n,i]=(0,Gt.BG)(t);let o=i.rendererBack;return o||(o=i.rendererBack=new Kt(e,n)),o}}class Zt extends a.GridCellRenderer{get name(){return"MacromoleculeDifferenceCR"}get cellType(){return Wt.uF.MACROMOLECULE_DIFFERENCE}get defaultHeight(){return 30}get defaultWidth(){return 230}render(t,e,n,i,o,r,s){Kt.getOrCreate(r).render(t,e,n,i,o,r,s)}}function Xt(t,e,n,i,o,r,s,a,l,c,h){if(r.length!==s.length){const t=function(t,e){let n=0,i=0;const o=t.length>e.length?t:e,r=t.length>e.length?e:t;for(let t=0;t<r.length;t++)o[t]===r[t]&&n++;const s=o.length-r.length;for(let t=o.length-1;t>s;t--)o[t]===r[t-s]&&i++;const a=new Array(Math.abs(t.length-e.length)).fill(wt.b9[gt.Hi.FASTA]);function l(t){return n>i?t.concat(a):a.concat(t)}return t.length>e.length?e=l(ot()(e).toArray()):t=l(ot()(t).toArray()),{subParts1:t,subParts2:e}}(r,s);r=t.subParts1,s=t.subParts2}const u=t.measureText(zt(r).join("")),d=t.measureText(zt(s).join("")),p=Math.max(u.width,d.width);c&&(i=p+4*r.length,t.canvas.width=p+4*r.length);let m=Math.max(e,e+(i-(p+4*r.length))/2)+5;const f=Math.max(n,n+(o-28)/2);t.save();try{t.beginPath(),t.rect(e,n,c?p+4*r.length:i,o),t.clip(),t.font="12px monospace",t.textBaseline="top";const u=7;for(let e=0;e<r.length;e++){const n=r[e],c=s[e];let d=kt.S$;if(l&&(d=l.getMonomerTextColor(a,n)),n!=c){let r=kt.S$;l&&(r=l.getMonomerTextColor(a,c));const s=(0,Rt.oZ)(t,n,m,f-u,i,o,{color:d,pivot:0,left:!0}),p=(0,Rt.oZ)(t,c,m,f+u,i,o,{color:r,pivot:0,left:!0});m=Math.max(p,s),h&&(h[e]=Jt(n,c,d,r,f,u,o))}else m=(0,Rt.oZ)(t,n,m,f,i,o,{color:d,pivot:0,left:!0,transparencyRate:.5});m+=4}}finally{t.restore()}}function Jt(t,e,n,i,o,r,s){const a=document.createElement("canvas"),l=a.getContext("2d");l.font="12px monospace";const c=l.measureText(zt([t]).join("")).width,h=l.measureText(zt([e]).join("")).width,u=Math.max(c,h);return a.height=s,a.width=u+4,l.font="12px monospace",l.textBaseline="top",(0,Rt.oZ)(l,t,0,o-r,u,s,{color:n,pivot:0,left:!0}),(0,Rt.oZ)(l,e,0,o+r,u,s,{color:i,pivot:0,left:!0}),a}var Qt,te=n(8070),ee=n(4326);!function(t){t.Unknown="unknown",t.FR="framework",t.CDR="cdr"}(Qt||(Qt={}));const ne=new class{constructor(){this.regionTypes=[Qt.CDR],this.chains=["Heavy","Light"],this.skipEmptyPositions=!1,this.fitWidth=!1,this.positionWidth=16,this.positionHeight=ee.fH.Entropy,this.filterSource=ee.Fo.filterSource}};var ie=n(7602),oe=n(250);const re=Qt;var se,ae;!function(t){t.STYLE="Style",t.BEHAVIOR="Behavior",t.LAYOUT="Layout",t.DATA="Data"}(se||(se={})),function(t){t.skipEmptyPositions="skipEmptyPositions",t.regionTypes="regionTypes",t.chains="chains",t.fitWidth="fitWidth",t.positionWidth="positionWidth",t.positionHeight="positionHeight",t.filterSource="filterSource"}(ae||(ae={}));const le=ne;class ce extends a.JsViewer{viewed=!1;regionsFg=null;regionsRoot=null;isOpened=!1;panelNode=null;regions=[];regionTypes;chains;skipEmptyPositions;fitWidth;positionWidth;positionHeight;filterSource;constructor(){super(),this.skipEmptyPositions=this.bool(ae.skipEmptyPositions,le.skipEmptyPositions,{category:se.DATA}),this.regionTypes=this.stringList(ae.regionTypes,le.regionTypes,{category:se.DATA,choices:Object.values(re).filter((t=>t!=re.Unknown))}),this.chains=this.stringList(ae.chains,le.chains,{category:se.DATA,choices:["Heavy","Light"]}),this.fitWidth=this.bool(ae.fitWidth,le.fitWidth,{category:se.LAYOUT}),this.positionWidth=this.float(ae.positionWidth,le.positionWidth,{category:se.LAYOUT,editor:"slider",min:0,max:64,description:"Internal WebLogo viewers property width of position."}),this.positionHeight=this.string(ae.positionHeight,le.positionHeight,{category:se.LAYOUT,choices:Object.keys(ee.fH)}),this.filterSource=this.string(ae.filterSource,le.filterSource,{category:se.BEHAVIOR,choices:Object.values(ee.lT)}),this.viewSyncer=new ie.g(eo.logger)}static viewerCounter=-1;viewerId=++ce.viewerCounter;viewerToLog(){return`VdRegionsViewer<${this.viewerId}>`}async init(){this.subs.push((0,h.fromEvent)(this.root,"mousemove").subscribe(this.rootOnMouseMove.bind(this)))}detach(){const t=`${this.viewerToLog()}.detach()`,e=super.detach.bind(this);this.viewSyncer.sync(`${t}`,(async()=>{this.setDataInProgress||(this.viewed&&(await this.destroyView("detach"),this.viewed=!1),e())}))}onTableAttached(){super.onTableAttached(),this.setData(this.regions)}onPropertyChanged(t){if(super.onPropertyChanged(t),t){switch(t.name){case ae.regionTypes:case ae.chains:this.setData(this.regions)}switch(t.name){case ae.skipEmptyPositions:for(let t=0;t<this.logos.length;++t)for(const e of this.chains)this.logos[t][e].setOptions({[oe.n5.skipEmptyPositions]:this.skipEmptyPositions});this.calcSize();break;case ae.fitWidth:case ae.positionWidth:this.calcSize();break;case ae.positionHeight:for(let t=0;t<this.logos.length;++t)for(const e of this.chains)this.logos[t][e].setOptions({[oe.n5.positionHeight]:this.positionHeight});this.calcSize();break;case ae.filterSource:this.filterSourceInput.value=this.filterSource;break;default:this.setData(this.regions)}}else console.warn("Bio: VdRegionsViewer.onPropertyChanged() property is null")}setData(t){const e=`${this.viewerToLog()}.setData()`;eo.logger.debug(`${e}, in, regions.length = ${t.length}`),this.viewSyncer.sync(`${e}`,(async()=>{if(!this.setDataInProgress){this.setDataInProgress=!0;try{this.viewed&&(await this.destroyView("setData"),this.viewed=!1),this.regions=t,this.viewed||(await this.buildView("setData"),this.viewed=!0)}finally{this.setDataInProgress=!1}}}))}viewSyncer;setDataInProgress=!1;host=null;filterSourceInput;mainLayout=null;logos=[];viewSubs=[];async destroyView(t){eo.logger.debug(`Bio: VdRegionsViewer.destroyView( mainLayout = ${this.mainLayout?"value":"none"} ), purpose = '${t}', this.regions.length = ${this.regions.length}`),this.filterSourceInput&&s.empty(this.filterSourceInput.root),null!=this.mainLayout&&(this.mainLayout.remove(),this.host.remove(),this.host=null,this.mainLayout=null);for(const t of this.viewSubs)t.unsubscribe()}async buildView(t){eo.logger.debug(`Bio: VdRegionsViewer.buildView() begin, purpose = '${t}', this.regions.length = ${this.regions.length}`);const e=this.regions.filter((t=>this.regionTypes.includes(t.type))),n=Array.from(new Set(e.map((t=>t.order)))).sort(),i=[];for(let t=0;t<n.length;t++)for(const o of this.chains){const r=e.find((e=>e.order==n[t]&&e.chain==o));i.push((async()=>{const e=await this.dataFrame.plot.fromType("WebLogo",{sequenceColumnName:r.sequenceColumnName,startPositionName:r.positionStartName,endPositionName:r.positionEndName,fixWidth:!0,skipEmptyPositions:this.skipEmptyPositions,positionWidth:this.positionWidth,positionHeight:this.positionHeight,filterSource:this.filterSource});return e.onSizeChanged.subscribe((()=>{this.calcSize()})),[t,o,e]})())}const o=await Promise.all(i);this.logos=new Array(n.length);for(let t=0;t<n.length;++t)this.logos[t]={};for(const[t,e,n]of o)this.logos[t][e]=n,this.viewSubs.push(n.onFreqsCalculated.subscribe((()=>{this.calcSize()})));this.mainLayout=s.table(this.chains,(t=>[...n.length>0?[s.div(t,{style:{transform:"rotate(-90deg)",font:"12px Roboto, Roboto Local, sans-serif",textAlign:"center",width:"16px",marginTop:"24px",marginLeft:"6px"}})]:[],...[...Array(n.length).keys()].map((e=>{const n=this.logos[e][t];return n.root.style.height="100%",s.div([n.root],{style:{marginTop:"4px",marginBottom:"4px"}})}))]),["",...[...Array(n.length).keys()].map((t=>e.find((e=>e.order==n[t]&&e.chain==this.chains[0])).name||"Name"))]),this.mainLayout.className="mlb-vd-regions-viewer-table2",this.filterSourceInput=s.input.choice("Data source",{value:this.filterSource,items:Object.values(ee.lT),onValueChanged:this.filterSourceInputOnValueChanged.bind(this)}),this.filterSourceInput.root.style.position="absolute",this.filterSourceInput.root.style.right="9px",this.filterSourceInput.root.style.top="-4px",Math.ceil(255*Math.random()).toString(16),this.host=s.div([this.mainLayout,this.filterSourceInput.root],{}),this.root.appendChild(this.host),this.root.style.overflowX="auto",this.calcSize(),this.viewSubs.push(s.onSizeChanged(this.root).subscribe(this.rootOnSizeChanged.bind(this))),eo.logger.debug("Bio: VdRegionsViewer.buildView() end")}calcSizeRequested=!1;calcSize(){eo.logger.debug("Bio: VdRegionsViewer.calcSize(), start");const t=()=>{if(!this.host)return;const t=(this.root.clientHeight-54)/this.chains.length;let e=0;for(let n=0;n<this.logos.length;n++){for(const e of this.chains)this.logos[n][e].root.style.height=`${t}px`;e+=Math.max(...this.chains.map((t=>this.logos[n][t].Length)))}if(this.fitWidth){if(this.logos.length>0&&e>0){const t=22,n=13,i=9,o=(this.root.clientWidth-t-(this.logos.length-1)*i-n)/e;for(let t=0;t<this.logos.length;t++)for(const e of this.chains){const n=this.logos[t][e];n.setOptions({[oe.n5.positionWidth]:o-n.positionMarginValue}),n.root.style.width=o*n.Length+"px"}}this.host.style.setProperty("overflow","hidden","important")}else{for(let t=0;t<this.logos.length;t++)for(const e of this.chains)this.logos[t][e].setOptions({[oe.n5.positionWidth]:this.positionWidth});this.host.style.removeProperty("overflow")}0===this.positionWidth?this.host.style.setProperty("overflow-x","hidden","important"):this.host.style.removeProperty("overflow-x")};this.calcSizeRequested||(this.calcSizeRequested=!0,window.setTimeout((()=>{t(),this.calcSizeRequested=!1}),0))}rootOnSizeChanged(t){this.calcSize()}rootOnMouseMove(t){}filterSourceInputOnValueChanged(){const t=`${this.viewerToLog()}.filterSourceInputOnValueChanged()`,e=this.filterSourceInput.value;this.viewSyncer.sync(`${t}`,(async()=>{if(this.filterSource!==e){this.props.getProperty(ae.filterSource).set(this,e);for(let t=0;t<this.logos.length;t++)for(let e=0;e<this.chains.length;e++){const n=this.chains[e];this.logos[t][n].setOptions({[oe.n5.filterSource]:this.filterSource})}}}))}_onRendered=new h.Subject;get onRendered(){return this._onRendered}invalidate(t){const e=`${this.viewerToLog()}.invalidate(${t?` <- ${t} `:""})`;this.viewSyncer.sync(`${e}`,(async()=>{this._onRendered.next()}))}async awaitRendered(t=5e3){await(0,te.PE)(this.onRendered,(()=>{}),(()=>{this.invalidate()}),t);const e=this.viewSyncer.resetErrors();if(e.length>0)throw e[0]}}var he=n(6625),ue=n(6863);async function de(t,e,n="Morgan"){const i=t.length,o=eo.seqHelper.getSeqHandler(t),r=Array(i);let s=1;const a=new Map,l=t.categories,c=t.getRawData();for(let e=0;e<i;e++){if(null===l[c[e]]||t.isNone(e)){r[e]=null;continue}r[e]="";const n=o.getSplitted(e);for(let t=0;t<n.length;t++){const i=n.getCanonical(t);a.has(i)||(a.set(i,String.fromCharCode(s)),s++),r[e]+=a.get(i)}}let h={};if(e===ue.Z.MONOMER_CHEMICAL_DISTANCE||e===ue.Z.NEEDLEMANN_WUNSCH){const t=Array.from(a.keys()),e=await(0,bt.A7)(t,n),i={};Object.entries(e.alphabetIndexes).forEach((([t,e])=>{i[a.get(t)]=e}));const o=r.reduce(((t,e)=>Math.max(t,e.length)),0);h={scoringMatrix:e.scoringMatrix,alphabetIndexes:i,maxLength:o}}return{seqList:r,options:h}}var pe=n(8115);function me(t){const e=s.divH([],{style:{gap:"10px"}}),n=s.divV([s.divText(t.seqCol.name),s.divText(t.activityCol.name)]);return n.style.fontWeight="bold",n.style.display="flex",n.style.justifyContent="space-between",e.append(n),t.points.forEach((n=>{const i=s.divText(t.activityCol.get(n).toFixed(2));i.style.display="flex",i.style.justifyContent="left",i.style.paddingLeft="30px",e.append(s.divV([s.divText(t.seqCol.get(n)),i]))})),e}function fe(t){const e=s.div();e.append(s.divText(t.seqCol.name,{style:{fontWeight:"bold"}}));const n=new Array(2);t.points.forEach(((e,i)=>{n[i]=t.activityCol.get(e)}));const i={},o=eo.seqHelper.getSeqHandler(t.seqCol),r=o.defaultBiotype,a=ye(o.getSplitted(t.points[0]),o.getSplitted(t.points[1]),r,i);return e.append(s.div(a,{style:{width:"300px",overflow:"scroll"}})),e.append(be(i)),e.append(ge("Activity delta",Math.abs(n[0]-n[1]))),e.append(ge("Cliff",t.sali)),e}function ge(t,e){return s.divH([s.divText(`${t}: `,{style:{fontWeight:"bold",paddingRight:"5px"}}),s.divText(e.toFixed(2))],{style:{paddingTop:"10px"}})}function ye(t,e,n,i){const o=document.createElement("canvas"),r=o.getContext("2d");o.height=30;const s=eo.monomerLib;return Xt(r,0,0,0,30,ot().count(0).take(t.length).map((e=>t.getCanonical(e))).toArray(),ot().count(0).take(e.length).map((t=>e.getCanonical(t))).toArray(),n,s,!0,i),o}function be(t){const e=s.div();if(Object.keys(t).length>0){const n=s.divV([]);n.append(s.divH([s.divText("Pos",{style:{fontWeight:"bold",width:"30px",borderBottom:"1px solid"}}),s.divText("Difference",{style:{fontWeight:"bold",borderBottom:"1px solid"}})]));for(const e of Object.keys(t))t[e].style.borderBottom="1px solid lightgray",n.append(s.divH([s.divText((parseInt(e)+1).toString(),{style:{width:"30px",borderBottom:"1px solid lightgray"}}),t[e]]));e.append(n)}return e}function ve(t,e){const n=a.Column.string("seq_diff",t.rowCount).init((n=>`${t.get(e[0],n)}#${t.get(e[1],n)}`));n.semType="MacromoleculeDifference",n.meta.units=t.col(e[0]).meta.units,n.setTag(gt.gp.separator,t.col(e[0]).getTag(gt.gp.separator)),t.columns.add(n);const i=t.plot.grid();return i.col(e[0]).visible=!1,i.col(e[1]).visible=!1,i}class we extends a.JsViewer{constructor(t,e){super(),this.name="",this.semType="",this.initialized=!1,this.gridSelect=!1,this.maxLimit=100,this.recomputeOnCurrentRowChange=!0,this.skipRecomputingProperies=[],this.debounceTimer=null,this.computeRequested=!1,this.renderPromise=Promise.resolve(),this.limit=this.int("limit",10,{min:1,max:this.maxLimit}),this.targetColumnName=this.string("targetColumnName",null,{...e?{semType:e}:{},nullable:!1}),this.name=t,this.semType=e}init(){this.initialized=!0}detach(){this.subs.forEach((t=>t.unsubscribe()))}async onTableAttached(){if(this.init(),this.dataFrame){this.subs.push(a.debounce(this.dataFrame.onRowsRemoved,50).subscribe((t=>this.render(!0))));const t="diversity"!==this.name;this.subs.push(a.debounce(this.dataFrame.onCurrentRowChanged,50).subscribe((e=>{this.gridSelect||this.render(t)}))),this.subs.push(a.debounce(this.dataFrame.selection.onChanged,50).subscribe((t=>this.render(!1)))),this.subs.push(a.debounce(s.onSizeChanged(this.root),50).subscribe((t=>this.render(!1)))),this.targetColumnName??(this.targetColumnName=this.dataFrame.columns.bySemType(this.semType).name),this.targetColumn=this.dataFrame.col(this.targetColumnName),this.getProperty("limit").fromOptions({min:1,max:this.maxLimit})}this.render()}onPropertyChanged(t){if(super.onPropertyChanged(t),this.initialized){if("targetColumnName"===t.name){const e=this.dataFrame.col(t.get(this));e.semType===this.semType&&(this.targetColumn=e)}this.debouncedRender()}}debouncedRender(t=!0){this.debounceTimer&&clearTimeout(this.debounceTimer),this.debounceTimer=setTimeout((()=>{this.render(t),this.debounceTimer=null}),100)}render(t=!0){this.renderPromise=this.renderPromise.then((async()=>{this.computeRequested=this.computeRequested||t,await this.renderInt(t)}))}async renderInt(t){}beforeRender(){return!(!this.initialized||!this.targetColumnName||this.dataFrame&&this.targetColumnName&&this.dataFrame.col(this.targetColumnName).semType!==this.semType&&(r.shell.error(`${this.targetColumnName} is not ${this.semType} type`),1))}}class Ce extends we{distanceMetric;fingerprint;metricsProperties=["distanceMetric","fingerprint"];fingerprintChoices=["Morgan","Pattern"];tags=[a.TAGS.UNITS,gt.gp.aligned,gt.gp.separator,gt.gp.alphabet,"cell.renderer"];preComputeDistanceMatrix=!1;constructor(t,e){super(t,e),this.fingerprint=this.string("fingerprint",this.fingerprintChoices[0],{choices:this.fingerprintChoices}),this.distanceMetric=this.string("distanceMetric",k.iS[0],{choices:k.iS})}async onTableAttached(){super.onTableAttached(),this.dataFrame&&(this.preComputeDistanceMatrix=this.dataFrame.rowCount<=22e3)}}const Ae={gapPenalty:1,matchScore:1,gapSymbol:wt.b9[wt.Hi.FASTA],localAlignment:!1};class Se extends Ce{seqHelper;cutoff;hotSearch;similarColumnLabel;sketchedMolecule="";curIdx=0;molCol=null;idxs=null;scores=null;gridSelect=!1;targetMoleculeIdx=0;computeCompleted=new h.Subject;distanceMatrixComputed=!1;mmDistanceMatrix;knn;kPrevNeighbors=0;demo;analysisGrid;subInited=!1;constructor(t,e){super("similarity",a.SEMTYPE.MACROMOLECULE),this.seqHelper=t,this.cutoff=this.float("cutoff",.01,{min:0,max:1}),this.hotSearch=this.bool("hotSearch",!0),this.similarColumnLabel=this.string("similarColumnLabel",null),this.demo=e}init(){this.hotSearch=!0,this.initialized=!0}async renderInt(t){if(this.beforeRender()&&this.targetColumn&&(this.curIdx=-1==this.dataFrame.currentRowIdx?0:this.dataFrame.currentRowIdx,t&&!this.gridSelect)){this.targetMoleculeIdx=(this.dataFrame.currentRowIdx??-1)<0?0:this.dataFrame.currentRowIdx,await this.computeByMM();const t=null!=this.similarColumnLabel?this.similarColumnLabel:`similar (${this.targetColumn})`;this.molCol=a.Column.string(t,this.idxs.length).init((t=>this.targetColumn?.get(this.idxs?.get(t)))),this.molCol.semType=a.SEMTYPE.MACROMOLECULE,this.tags.forEach((t=>this.molCol.setTag(t,this.targetColumn.getTag(t))));const e=a.DataFrame.fromColumns([this.idxs,this.molCol,this.scores]);await e.meta.detectSemanticTypes(),await r.data.detectSemanticTypes(e),this.molCol.temp["reference-sequence"]=this.targetColumn.get(this.targetMoleculeIdx),this.molCol.temp[".mm.cellRenderer.maxMonomerLength"]=4;let n=null;e.onCurrentRowChanged.subscribe((t=>{n&&clearTimeout(n),(e.currentRowIdx??-1)<0||(this.dataFrame.currentRowIdx=e.col("indexes").get(e.currentRowIdx),n=setTimeout((()=>{this.createPropertyPanel(e)}),300),this.gridSelect=!0)})),this.analysisGrid?(this.analysisGrid.dataFrame=e,this.analysisGrid.invalidate()):(this.analysisGrid=e.plot.grid(),(0,$t.Ku)(this.root,this.analysisGrid.root)),this.analysisGrid.col("indexes").visible=!1,(0,$t.Kd)(this.analysisGrid,this.molCol.name,450,30,!0);const i=this.idxs?.getRawData().findIndex((t=>t==this.targetMoleculeIdx));this.analysisGrid.cell("score",i).cell.value=null;const o=r.shell.tv;this.subInited||(o.grid.root.addEventListener("click",(t=>{this.gridSelect=!1})),this.subInited=!0),this.computeCompleted.next(!0)}}async computeByMM(){const t=this.targetColumn.length,e=Math.min(this.limit,t-1);if(!this.knn||this.kPrevNeighbors!==e){const n=(await de(this.targetColumn,ue.Z.LEVENSHTEIN)).seqList;this.kPrevNeighbors=e,this.knn=await(new F).getKNN(n,ue.Z.LEVENSHTEIN,Math.min(this.limit,t-1))}const n=new Array(e).fill(0).map(((t,e)=>({idx:this.knn.knnIndexes[this.targetMoleculeIdx][e],score:1-this.knn.knnDistances[this.targetMoleculeIdx][e]})));n.sort(((t,e)=>e.score-t.score)),n.unshift({idx:this.targetMoleculeIdx,score:a.FLOAT_NULL}),this.idxs=a.Column.int("indexes",e+1).init((t=>n[t].idx)),this.scores=a.Column.float("score",e+1).init((t=>n[t].score))}createPropertyPanel(t){const e=s.div(),n={},i=this.molCol?.name,o=t.col(i),a=this.seqHelper.getSeqHandler(this.targetColumn),l=this.seqHelper.getSeqHandler(o),c=a.getSplitted(this.targetMoleculeIdx),h=l.getSplitted(t.currentRowIdx),u=function(t,e,n={}){const i={...Ae,...n},o=t.length,r=e.length,s=Array(o+1).fill(0).map((()=>Array(r+1).fill(0)));let a=-9999,l=[1,1];for(let n=1;n<o+1;n++)for(let o=1;o<r+1;o++)s[n][o]=Math.max(0,s[n-1][o-1]+(t.getCanonical(n-1)===e.getCanonical(o-1)?i.matchScore:-i.matchScore),s[n-1][o]-i.gapPenalty,s[n][o-1]-i.gapPenalty),s[n][o]>=a&&(a=s[n][o],l=[n,o]);let c=i.localAlignment?l[0]:o,h=i.localAlignment?l[1]:r,u=new Array(0),d=new Array(0);for(;c>0&&h>0;){const n=Math.max(s[c-1][h-1],s[c-1][h],s[c][h-1]);s[c][h]==s[c-1][h-1]+i.matchScore&&n==s[c-1][h-1]?(u.push(t.getCanonical(c-1)),d.push(e.getCanonical(h-1)),c-=1,h-=1):s[c][h]==s[c-1][h]-i.gapPenalty?(d.push(i.gapSymbol),u.push(t.getCanonical(c-1)),c-=1):s[c][h]==s[c][h-1]-i.gapPenalty?(u.push(i.gapSymbol),d.push(e.getCanonical(h-1)),h-=1):(u.push(t.getCanonical(c-1)),d.push(e.getCanonical(h-1)),c-=1,h-=1)}u=[...ot().count(0).take(c).map((e=>t.getCanonical(e))),...u.reverse(),...i.localAlignment?ot().count(l[0]).take(o).map((e=>t.getCanonical(e))):[]],d=[...ot().count(0).take(h).map((t=>e.getCanonical(t))),...d.reverse(),...i.localAlignment?ot().count(l[1]).take(r).map((t=>e.getCanonical(t))):[]];const p=c,m=h;return p>m?d=[...new Array(p-m).fill(i.gapSymbol.valueOf()),...d]:u=[...new Array(m-p).fill(i.gapSymbol.valueOf()),...u],d.length>u.length?u.push(...new Array(d.length-u.length).fill(i.gapSymbol.valueOf())):d.push(...new Array(u.length-d.length).fill(i.gapSymbol.valueOf())),{seq1:u.join(""),seq2:d.join(""),seq1Splitted:new Ot.Mu(u,i.gapSymbol),seq2Splitted:new Ot.Mu(d,i.gapSymbol)}}(c,h),d=ye(u.seq1Splitted,u.seq2Splitted,l.defaultBiotype,n);e.append(s.div(d,{style:{width:"300px",overflow:"scroll"}})),c.length!==h.length&&e.append(s.divV([s.divText("Different sequence length:",{style:{fontWeight:"bold"}}),s.divText(`target: ${c.length} monomers`),s.divText(`selected: ${h.length} monomers`)],{style:{paddingBottom:"10px"}})),e.append(be(n));const p=s.accordion(),m=s.element("i");m.className="grok-icon svg-icon svg-view-layout",p.addTitle(s.span([m,s.label("Similarity search")])),p.addPane("Differences",(()=>e),!0),r.shell.o=p.root}}var xe=n(1407);class Ee extends Ce{seqHelper;diverseColumnLabel;renderMolIds=null;columnNames=[];computeCompleted=new h.Subject;constructor(t){super("diversity",a.SEMTYPE.MACROMOLECULE),this.seqHelper=t,this.diverseColumnLabel=this.string("diverseColumnLabel",null)}async renderInt(t){if(this.beforeRender()&&this.dataFrame&&t&&this.targetColumn){const t=this.seqHelper.getSeqHandler(this.targetColumn);await(t.isFasta()?this.computeByMM():this.computeByChem());const e=null!=this.diverseColumnLabel?this.diverseColumnLabel:`diverse (${this.targetColumnName})`,n=a.Column.string(e,this.renderMolIds.length).init((t=>this.targetColumn?.get(this.renderMolIds[t])));n.semType=a.SEMTYPE.MACROMOLECULE,this.tags.forEach((t=>n.setTag(t,this.targetColumn.getTag(t))));const i=a.DataFrame.fromColumns([n]);n.temp[".mm.cellRenderer.maxMonomerLength"]=4,i.onCurrentRowChanged.subscribe((t=>{this.dataFrame.currentRowIdx=this.renderMolIds[i.currentRowIdx]}));const o=i.plot.grid();(0,$t.Kd)(o,n.name,450,30),(0,$t.Ku)(this.root,o.root),this.computeCompleted.next(!0)}}async computeByChem(){const t=await(0,xe.R)(this.targetColumn,this.seqHelper);a.DataFrame.fromColumns([t]),this.renderMolIds=await r.functions.call("Chem:callChemDiversitySearch",{col:t,metricName:this.distanceMetric,limit:this.limit,fingerprint:this.fingerprint})}async computeByMM(){const t=(await de(this.targetColumn,ue.Z.LEVENSHTEIN)).seqList,e=new G(!0,!1),n=await e.calc(t,ue.Z.LEVENSHTEIN);e.terminate();const i=this.targetColumn.length,o=(r=i,(t,e)=>r*t+e-Math.floor((t+2)*(t+1)/2));var r;this.renderMolIds=function(t,e,n){function i(t,e){let n=null,i=null;for(const o of t){const t=e(o);(null==i||t>i)&&(n=o,i=t)}return n}const o=[(s=t-1,Math.floor(function(t){return Math.random()*t}(s)))],r=new Set;var s;for(let e=0;e<t;++e)o.includes(e)||r.add(e);for(;o.length<e;){const t=i(r.values(),(t=>Math.min.apply(Math,o.map((function(e,i){return n(t,e)})))));null!=t&&(o.push(t),r.delete(t))}return o}(i,Math.min(i,this.limit),((t,e)=>this.targetColumn.isNone(t)||this.targetColumn.isNone(e)?0:n[o(t,e)]))}}var Te,_e=n(5433),Me=n(3890),Ie=n(1687);!function(t){t.TYPE="V2000",t[t.NUM_OF_HEADER_LINES=3]="NUM_OF_HEADER_LINES",t[t.NUM_OF_COUNTS_DIGITS=3]="NUM_OF_COUNTS_DIGITS",t[t.ATOM_TYPE_COL=4]="ATOM_TYPE_COL",t[t.FIRST_BONDED_ATOM_COL=1]="FIRST_BONDED_ATOM_COL",t[t.BOND_TYPE_COL=3]="BOND_TYPE_COL",t[t.RGP_SHIFT=8]="RGP_SHIFT",t[t.MAX_ATOM_COUNT=999]="MAX_ATOM_COUNT",t.RGP_LINE_START="M RGP",t.ATOM_ALIAS_LINE_START="A ",t.END="M END"}(Te||(Te={}));class Le{constructor(t){this.init(t)}init(t){this.fileContent=t.replace(/\r/g,""),this._atomCount=void 0,this._atomTypes=void 0,this._bondCount=void 0,this._bondTypes=void 0,this.xyzAtomCoordinates=void 0,this._pairsOfBondedAtoms=void 0}get atomCount(){return void 0===this._atomCount&&this.setAtomAndBondCounts(),this._atomCount}get bondCount(){return void 0===this._bondCount&&this.setAtomAndBondCounts(),this._bondCount}get x(){var t;return null!==(t=this.xyzAtomCoordinates)&&void 0!==t||(this.xyzAtomCoordinates=this.parseAtomCoordinates()),this.xyzAtomCoordinates.x}get y(){var t;return null!==(t=this.xyzAtomCoordinates)&&void 0!==t||(this.xyzAtomCoordinates=this.parseAtomCoordinates()),this.xyzAtomCoordinates.y}get z(){var t;return null!==(t=this.xyzAtomCoordinates)&&void 0!==t||(this.xyzAtomCoordinates=this.parseAtomCoordinates()),this.xyzAtomCoordinates.z}get atomTypes(){var t;return null!==(t=this._atomTypes)&&void 0!==t||(this._atomTypes=this.parseAtomTypes()),this._atomTypes}get pairsOfBondedAtoms(){var t;return null!==(t=this._pairsOfBondedAtoms)&&void 0!==t||(this._pairsOfBondedAtoms=this.parseBondedAtomPairs()),this._pairsOfBondedAtoms}get bondTypes(){var t;return null!==(t=this._bondTypes)&&void 0!==t||(this._bondTypes=this.parseBondTypes()),this._bondTypes}setAtomAndBondCounts(){const{atomCount:t,bondCount:e}=this.parseAtomAndBondCounts();this._atomCount=t,this._bondCount=e}getNextColumnIdx(t){for(;!this.isWhitespace(t);)++t;for(;this.isWhitespace(t);)++t;return t}shiftIdxToSpecifiedColumn(t,e){let n=t;const i=this.isWhitespace(n)?e:e-1;for(let t=0;t<i;t++)n=this.getNextColumnIdx(n);return n}parseAtomTypes(){const t=this.atomCount,e=new Array(t);let n=this.getAtomBlockIdx();for(let i=0;i<t;i++)n=this.shiftIdxToAtomType(n),e[i]=this.parseAtomType(n),n=this.getNextLineIdx(n);return e}parseAtomCoordinates(){const t=new Float32Array(this.atomCount),e=new Float32Array(this.atomCount),n=new Float32Array(this.atomCount);let i=this.getAtomBlockIdx();for(let o=0;o<this.atomCount;o++){i=this.shiftIdxToXColumn(i);for(const r of[t,e,n])r[o]=this.parseFloatValue(i),i=this.getNextColumnIdx(i);i=this.getNextLineIdx(i)}return{x:t,y:e,z:n}}parseBondedAtomPairs(){const t=new Array(this.bondCount);let e=this.getBondBlockIdx();for(let n=0;n<this.bondCount;n++){e=this.shiftIdxToBondedAtomsPair(e);const i=new Uint16Array(2);i[0]=this.parseIntValue(e),e=this.getNextColumnIdx(e),i[1]=this.parseIntValue(e),t[n]=i,e=this.getNextLineIdx(e)}return t}parseBondTypes(){const t=this.bondCount,e=new Uint16Array(t);let n=this.getBondBlockIdx();for(let i=0;i<t;i++)n=this.shiftIdxToBondType(n),e[i]=this.parseIntValue(n),n=this.getNextLineIdx(n);return e}isWhitespace(t){const e=this.fileContent[t];return" "===e||"\t"===e}getNextLineIdx(t){return"\n"!==this.fileContent[t]?this.fileContent.indexOf("\n",t)+1:t+1}parseFloatValue(t){return this.parseNumericValue(parseFloat,t)}parseIntValue(t){return this.parseNumericValue(parseInt,t)}parseNumericValue(t,e){let n=e+1;for(;!this.isWhitespace(n);)++n;return t(this.fileContent.substring(e,n))}}class Ne extends Le{constructor(t){super(t),this.init(t)}init(t){super.init(t)}parseAtomType(t){let e=t,n=e;return this.isQuote(e)?(n=this.getNextIdenticalChar(e),e++):n=this.fileContent.indexOf(" ",n),this.fileContent.substring(e,n)}isQuote(t){const e=this.fileContent[t].charCodeAt(0);return 39===e||34===e}getNextIdenticalChar(t){const e=this.fileContent[t];return e?this.fileContent.indexOf(e,t+1):-1}isQuery(){return this.isQueryOrFragment(((t,e)=>{return 39===t||34===t||76===t&&!((n=this.fileContent.charCodeAt(e+1))>64&&n<91||n>96&&n<123);var n}))}isFragment(){return this.isQueryOrFragment((t=>82===t||42===t))}isQueryOrFragment(t){const e=this.atomCount;let n=this.getAtomBlockIdx();for(let i=0;i<e;i++){if(n=this.shiftIdxToAtomType(n),t(this.fileContent.charCodeAt(n),n))return!0;n=this.getNextLineIdx(n)}return!1}}class Pe extends Ne{constructor(t){super(t)}getAtomLines(){const t=this.getAtomBlockIdx(),e=this.getBondBlockIdx();return this.fileContent.substring(t,e).split("\n").slice(0,this.atomCount)}getBondLines(){const t=this.getBondBlockIdx();return this.fileContent.substring(t).split("\n").slice(0,this.bondCount)}getRGroupIdToAtomicIdxMap(){const t=new Map,e=this.fileContent.split("\n");e.filter((t=>t.startsWith(Te.RGP_LINE_START))).forEach((e=>{const n=this.getAtomIdxToRgpIdxList(e);for(const[e,i]of n){if(t.has(e))throw new Error(`R group ${e} is already in the map`);t.set(e,i)}}));const n=e.map(((t,e)=>{if(t.startsWith(Te.ATOM_ALIAS_LINE_START))return e})).filter((t=>void 0!==t)),i=n.map((t=>e[t])),o=n.map((t=>e[t+1]));i.forEach(((e,n)=>{const i=parseInt(e.split(/\s+/)[1])-1,r=parseInt(o[n].substring(1));if(t.has(r))throw new Error(`R group ${r} is already in the map`);t.set(r,i)}));const r=this.getRGroupAtomicIndices().filter((e=>!Array.from(t.values()).includes(e)));if(0!==r.length)throw new Error(`Unaccounted R group indices: ${r}`);return t}getAtomIdxToRgpIdxList(t){const e=t.split(/\s+/).filter((t=>t)).slice(3).map((t=>parseInt(t))),n=new Array(e.length/2);for(let t=0;t<e.length;t+=2)n[t/2]=[e[t+1],e[t]-1];return n}getRGroupAtomicIndices(){return this.atomTypes.map(((t,e)=>{if(t.includes("R#"))return e})).filter((t=>void 0!==t))}static isValidMolfile(t){return-1!==t.indexOf(Te.TYPE)&&-1!==t.indexOf(Te.END)}shiftIdxToAtomType(t){return this.shiftIdxToSpecifiedColumn(t,Te.ATOM_TYPE_COL)}getCountsLineIdx(){let t=0;for(let e=0;e<Te.NUM_OF_HEADER_LINES;++e)t=this.getNextLineIdx(t);return t}getAtomBlockIdx(){let t=this.getCountsLineIdx();return t=this.getNextLineIdx(t),t}shiftIdxToXColumn(t){return this.getNextColumnIdx(t)}shiftIdxToBondedAtomsPair(t){return this.shiftIdxToSpecifiedColumn(t,Te.FIRST_BONDED_ATOM_COL)}shiftIdxToBondType(t){return this.shiftIdxToSpecifiedColumn(t,Te.BOND_TYPE_COL)}getBondBlockIdx(){let t=this.getAtomBlockIdx();for(let e=0;e<this.atomCount;e++)t=this.getNextLineIdx(t);return t}parseAtomAndBondCounts(){let t=this.getCountsLineIdx(),e=t+Te.NUM_OF_COUNTS_DIGITS;const n=parseInt(this.fileContent.substring(t,e));return t=e,e+=Te.NUM_OF_COUNTS_DIGITS,{atomCount:n,bondCount:parseInt(this.fileContent.substring(t,e))}}}class $e extends Ne{constructor(t){super(t),this.init(t)}getAtomLines(){const t=this.getAtomBlockIdx(),e=this.getBondBlockIdx();return this.fileContent.substring(t,e).split("\n").slice(0,this.atomCount)}getBondLines(){const t=this.getBondBlockIdx();return this.fileContent.substring(t).split("\n").slice(0,this.bondCount)}getRGroupIdToAtomicIdxMap(){const t=new Map;return this.getAtomLines().forEach(((e,n)=>{const i=e.match(/RGROUPS=\(([\d\s]+)\)/);if(i){const e=i[1].split(/\s+/).map((t=>parseInt(t)));if(e.length>2)throw new Error(`R group data ${e} has more than 2 elements`);const o=e[1];if(t.has(o))throw new Error(`R group ${o} is already in the map`);t.set(o,n)}})),t}shiftIdxToAtomType(t){return this.shiftIdxToSpecifiedColumn(t,4)}getCountsLineIdx(){return this.fileContent.indexOf("M V30 COUNTS ")}getAtomBlockIdx(){let t=this.fileContent.indexOf("M V30 BEGIN ATOM");return t=this.getNextLineIdx(t),t}shiftIdxToXColumn(t){let e=this.shiftIdxToAtomType(t);return this.isQuote(e)?(e=this.getNextIdenticalChar(e),e=this.getNextColumnIdx(e),e):this.shiftIdxToSpecifiedColumn(t,5)}shiftIdxToBondedAtomsPair(t){return this.shiftIdxToSpecifiedColumn(t,5)}shiftIdxToBondType(t){return this.shiftIdxToSpecifiedColumn(t,4)}getBondBlockIdx(){return this.getNextLineIdx(this.fileContent.indexOf("M V30 BEGIN BOND"))}static isValidMolfile(t){return-1!==t.indexOf("V3000")&&-1!==t.indexOf("M END")}parseAtomAndBondCounts(){let t=this.fileContent.indexOf("M V30 COUNTS ")+14,e=this.fileContent.indexOf(" ",t+1);const n=parseInt(this.fileContent.substring(t,e));return t=e+1,e=this.fileContent.indexOf(" ",t+1),{atomCount:n,bondCount:parseInt(this.fileContent.substring(t,e))}}}class Re{constructor(){}static getInstance(t){if(Re.isMolfileV2K(t))return new Pe(t);if(Re.isMolfileV3K(t))return new $e(t);throw new Error("Malformed molfile")}static isMolfileV2K(t){return Pe.isValidMolfile(t)}static isMolfileV3K(t){return $e.isValidMolfile(t)}}var ke=n(6197),Oe=n(9124),He=n(3527);class Ge{biotype;id;n;m;type;mt;smiles;get issmiles(){return!!this.smiles}at={R1:"H",R2:"H",R3:"H",R4:"H",R5:"H",R6:"H",R7:"H",R8:"H",R9:"H"};get rs(){return Object.keys(this.at).length}constructor(t,e,n="missing",i=void 0,o=void 0,r=void 0,s){if(this.biotype=t,this.id=e,this.n=n,this.m=i,this.type=o,this.mt=r,this.smiles=s,!this.id)throw new Error("Invalid arg undefined [id].")}static objCounter=-1;objId=++Ge.objCounter;className="WebEditorMonomerDummy";toLog(){return`Helm: ${this.className}<${this.objId}>`}}class Fe extends Ge{backgroundcolor="#FFFFFF";linecolor="#808080";textcolor="#808080";constructor(t){super(t,"*","gap")}}class De extends Ge{backgroundcolor="#808080";linecolor="#000000";textcolor="#000000";constructor(t,e){super(t,e,"ambiguous")}}class Be extends Ge{backgroundcolor="#FF4444";linecolor="#800000";textcolor="#FFFFFF";constructor(t,e,n){super(t,e,"missing"),n&&(this.backgroundcolor="#C0C0C0",this.linecolor="#404040",this.textcolor="#404040")}}class Ve extends Ge{backgroundcolor="#FFFF44";linecolor="#800000";textcolor="#000000";constructor(t,e){super(t,e,"broken")}}class We{id;m;n;na;type;mt;at;smiles;get rs(){return Object.keys(this.at).length}get issmiles(){return!!this.smiles}linecolor;backgroundcolor;textcolor;constructor(t,e,n,i,o,r,s,a){this.id=t,this.m=e,this.n=n,this.na=i,this.type=o,this.mt=r,this.at=s,this.smiles=a}static fromMonomer(t,e,n){let i={};const o=e.symbol,r=e.smiles;if(e.rgroups.length>0)e.rgroups.forEach((t=>{i[t.label]=t.capGroupName}));else{if(!r){if(e.lib)return new Ve(t,o);throw new Error("Unexpected missing monomer without .lib")}i=n.getRS(r)}const s=new We(e.symbol,e.molfile,e.name,e.naturalAnalog,e.polymerType,e.monomerType,i),a=n.getMonomerColors(t,e.symbol);return a&&(s.textcolor=a?.textcolor,s.linecolor=a?.linecolor,s.backgroundcolor=a?.backgroundcolor),s}}const Ue={[Ft.o.BASE]:{A:"#20E040",G:"#040404",T:"#FF8080",C:"#2060FF",U:"#FF8080"},[Ft.o.NUCLEOTIDE]:{A:"#20E040",G:"#040404",T:"#FF8080",C:"#2060FF",U:"#FF8080"},[Ft.o.LINKER]:{P:"#9aa5e1",p:"#9aa5e1"},[Ft.o.SUGAR]:{R:"#7a85c1",r:"#7a85c1"},[Ft.o.AA]:{A:"rgb(44,160,44)",R:"rgb(23,190,207)",N:"rgb(235,137,70)",D:"rgb(31,119,180)",C:"rgb(188,189,34)",E:"rgb(31, 120, 150)",Q:"rgb(205, 111, 71)",G:"rgb(214,39,40)",H:"rgb(158,218,229)",I:"rgb(23,103,57)",L:"rgb(30,110,96)",K:"rgb(108, 218, 229)",M:"rgb(60,131,95)",F:"rgb(24,110,79)",P:"rgb(255,152,150)",S:"rgb(255,187,120)",T:"rgb(245,167,100)",W:"rgb(182, 223, 138)",Y:"rgb(152,223,138)",V:"rgb(74,160,74)"},[Ft.o.CHEM]:{R:"#eeeeee"},[Ft.o.BLOB]:{B:"#999999",G:"#e2e2e2"}},je=/[\w()]+/,qe=RegExp(String.raw`\(${je}(,${je})+\)`),ze=t=>{const e=s.canvas(250,250);return r.chem.canvasMol(0,0,250,250,e,t),e},Ye=new He.Mi([255,255,255]),Ke=new He.Mi([0,0,0]),Ze=.7*(0,z.wQ)(Ye);class Xe{_monomers;source;_isEmpty;get isEmpty(){return this._isEmpty}_onChanged=new h.Subject;get onChanged(){return this._onChanged}constructor(t,e){this._monomers=t,this.source=e,this._isEmpty=!this._monomers||0===Object.keys(this._monomers).length||Object.entries(this._monomers).every((([t,e])=>0===Object.keys(e).length));for(const[t,e]of Object.entries(this._monomers))for(const[t,n]of Object.entries(e))n.lib=this}getMonomerSymbolsByType(t){return Object.keys(this._monomers[t])}addMissingMonomer(t,e){let n=this._monomers[t];n||(n=this._monomers[t]={});let i=e;return e==wt._S||e===wt.b9[wt.Hi.HELM]?i="Gap":("PEPTIDE"===t&&"X"===e||"RNA"===t&&"N"===e)&&(i="Any"),n[e]={symbol:e,name:i,molfile:"",author:"MISSING",id:-1,rgroups:ot().count(1).take(9).map((t=>({capGroupSmiles:"",alternateId:"",capGroupName:"",label:`R${t.toString()}`}))).toArray(),smiles:"",polymerType:t,monomerType:void 0,createDate:null}}getMonomer(t,e){let n=e;"RNA"==t&&"R"==n&&(n="r"),"RNA"==t&&"P"==n&&(n="p");let i=null;if(t){const e=this._monomers[t];i=e?e[n]:null}else{eo.logger.warning(`Bio: MonomerLib.getMonomer() symbol '${e}', polymerType not specified.`);for(const[t,e]of Object.entries(this._monomers))if(i=e[n],i)break}return i}getWebEditorMonomer(t,e){const[n,i]=(0,Oe.fA)(t,e),o=(0,ke.Y)(n);let r=this.getMonomer(o,i);if(r&&n==Ft.o.LINKER&&2!=r.rgroups.length)return null;if(r&&n==Ft.o.SUGAR&&3!=r.rgroups.length)return null;r||(r=this.addMissingMonomer(o,i));let s=r.wem??null;return s||(i===wt._S||"*"==i?s=r.wem=new Fe(n):n===Ft.o.NUCLEOTIDE&&"N"===i||n===Ft.o.AA&&"X"===i||(Ft.o.CHEM,0)||qe.test(i)?s=r.wem=new De(n,i):r.lib||(s=r.wem=new Be(n,i,this.isEmpty)),s||(s=r.wem=We.fromMonomer(n,r,this))),s}getTooltip(t,e){const n=(0,ke.Y)(t),i=s.div([],{classes:"ui-form ui-tooltip"}),o=this.getWebEditorMonomer(t,e),r=this.getMonomer(n,e);if(r){const t=r.symbol,[e,n,a]=(r.name,o?[o.textcolor,o.backgroundcolor,o.linecolor]:["#202020","#A0A0A0","#202020"]);let l;if(i.append(s.divH([s.div([t],{style:{textWrap:"nowrap",marginLeft:"4px",marginRight:"4px",color:e,backgroundColor:n,borderColor:a,borderWidth:"1px",borderStyle:"solid",borderRadius:"2px",padding:"3px",minWidth:"24px",textAlign:"center"}}),s.div([r.name],{style:{padding:"4px"}})],{style:{display:"flex",flexDirection:"row",justifyContent:"left"}})),l=r.molfile?ze(r.molfile):r.smiles?s.divV([ze(r.smiles),s.divText("from smiles",{style:{fontSize:"smaller"}})]):s.divText("No structure",{style:{margin:"6px"}}),i.append(s.div(l,{style:{display:"flex",flexDirection:"row",justifyContent:"center",margin:"6px"}})),r.symbol!=wt._S){let t=r.lib?.source;t?(t.endsWith(".json")&&(t=t.substring(0,t.length-5)),t=t.replace(/_/g," ").replace(/-/g," ").replace(/([a-z])([a-z])([A-Z])/g,"$1$2 $3"),i.append(s.divText(t))):i.append(s.divText("Missed in libraries"))}}else i.append(s.divV([s.divText(`Monomer '${e}' of type '${n}' not found.`),s.divText("Open the Context Panel, then expand Manage Libraries")]));return i}getMonomerTextColor(t,e){const n=this.getMonomerColors(t,e),i=t=>{const e=/rgb\(\s*(\d+)\s*,\s*(\d+)\s*,\s*(\d+)\s*\)/.exec(t);if(e)return[parseInt(e[1]),parseInt(e[2]),parseInt(e[3])];const n=a.Color.fromHtml(t);return[a.Color.r(n),a.Color.g(n),a.Color.b(n)]},o=i(n.textcolor),r=new He.Mi([...o.map((t=>t+1))]),s=(0,z.KE)(r,Ye)/((0,z.wQ)(r)*(0,z.wQ)(Ye)),l=i(n.backgroundcolor),c=new He.Mi([...l.map((t=>t+.01))]);let h;h=(0,z.KE)(c,Ye)/((0,z.wQ)(c)*(0,z.wQ)(Ye))<s?l:o;let u=new He.Mi(h);const d=(0,z.wQ)(u);return d>Ze&&(u=(0,z.dC)(Ke,u,Ze/d)),`rgb(${u[0]}, ${u[1]}, ${u[2]})`}getMonomerColors(t,e){const n="default";let i=n;const o=(0,ke.Y)(t),r=this.getMonomer(o,e);let s;if(r){if(r.meta&&r.meta.colors){const t=r.meta.colors;n in t||(i="default"),s=t[i]}if(!s){const e=Ue[t],n=e?.[r.symbol];n&&(s={textColor:a.Color.toHtml(a.Color.getContrastColor(a.Color.fromHtml(n))),lineColor:"#202020",backgroundColor:n})}const e=r.naturalAnalog;if(!s&&e)return this.getMonomerColors(t,e)}return s||(s={textColor:"#202020",lineColor:"#202020",backgroundColor:"#A0A0A0"}),{textcolor:s.text??s.textColor,linecolor:s.line??s.lineColor,backgroundcolor:s.background??s.backgroundColor}}getRS(t){const e=t.match(/(?<=\[)[^\][]*(?=])/gm),n={};let i,o="";if(e)for(let t=0;t<e.length;t++)if(null!=e[t]&&/\d/.test(e[t])){i=e[t][e[t].length-1],e[t]=e[t].replace(/[0-9]/g,"");for(let n=0;n<e[t].length;n++)":"!=e[t][n]&&(o+=e[t][n]);n["R"+i]=o,o=""}return n}}var Je=n(5488),Qe={};Qe.styleTagTransform=A(),Qe.setAttributes=b(),Qe.insert=g().bind(null,"head"),Qe.domAPI=m(),Qe.insertStyleElement=w(),d()(Je.A,Qe),Je.A&&Je.A.locals&&Je.A.locals;class tn extends Xe{error;_duplicateMonomers={};get duplicateMonomers(){return this._duplicateMonomers}_duplicatesHandled=!0;get duplicatesHandled(){return this._duplicatesHandled}duplicatesNotified=!1;constructor(t,e,n=void 0){super(t,e),this.error=n}toJSON(){const t=[];for(const e of Object.values(this._monomers))for(const n of Object.values(e))t.push({...n,lib:void 0,wem:void 0});return t}getMonomer(t,e){let n=e;"RNA"==t&&"R"==n&&(n="r"),"RNA"==t&&"P"==n&&(n="p");let i=null;if(t){const e=this._monomers[t];i=e?.[n]??null}else{eo.logger.warning(`Bio: MonomerLib.getMonomer() symbol '${e}', polymerType not specified.`);for(const[t,e]of Object.entries(this._monomers))if(i=e[n],i)break}return i}_monomerSets=null;getMonomerSet(t){const e=(0,ke.Y)(t);if(this._monomerSets||(this._monomerSets={}),!(t in this._monomerSets))for(const[t,n]of Object.entries(this._monomers[e]));return this._monomerSets[t]}getPolymerTypes(){return Object.keys(this._monomers)}getMonomerMolsByPolymerType(t){const e={};return Object.keys(this._monomers[t]??{}).forEach((n=>{e[n]=this._monomers[t][n].molfile})),e}getMonomerSymbolsByRGroup(t,e,n){let i=this.getMonomerSymbolsByType(e).map((t=>this.getMonomer(e,t)));return i=i.filter((t=>null!==t)),0===i.length?[]:(i=i.filter((e=>{if(!e?.rgroups)return!1;let n=e?.rgroups.length>=t;var i;return i=Re.getInstance(e.molfile).atomTypes,i.map(((t,e)=>"R#"===t?e:-1)).filter((t=>-1!==t)),n&&=!0,n})),i.map((t=>t?.symbol)))}_updateLibInt(t){const e=t.getPolymerTypes(),n=this.getPolymerTypes();e.forEach((e=>{n.includes(e)||(this._monomers[e]={}),t.getMonomerSymbolsByType(e).forEach((n=>{this._monomers[e][n]&&(this._duplicateMonomers[e]??={},this._duplicateMonomers[e][n]??=[this._monomers[e][n]],this._duplicateMonomers[e][n].push(t.getMonomer(e,n))),this._monomers[e][n]=t.getMonomer(e,n)}))})),this._isEmpty=this.isEmpty&&t.isEmpty}updateLibs(t,e=!1){e&&(this._monomers={},this._isEmpty=!0),this._duplicateMonomers={};for(const e of t)e.error||this._updateLibInt(e);Object.entries(this.duplicateMonomers).length>0?(0,Nt.ub)().then((t=>{this.assignDuplicatePreferences(t)})):this._duplicatesHandled=!0,this._onChanged.next()}assignDuplicatePreferences(t){let e=!0;for(const n in this.duplicateMonomers)for(const i in this.duplicateMonomers[n])if(t.duplicateMonomerPreferences?.[n]?.[i]){const o=t.duplicateMonomerPreferences[n][i],r=this.duplicateMonomers[n][i].find((t=>t.lib?.source===o));r?this._monomers[n][i]=r:e=!1}else e=!1;return this._duplicatesHandled=e,e}clear(){this._monomers={},this._onChanged.next()}getSummaryObj(){const t={},e=this.getPolymerTypes();for(const n of e)t[n]=this.getMonomerSymbolsByType(n).length;return t}getSummaryDf(){const t=this.getPolymerTypes(),e=new Array(t.length);for(const[n,i]of ot().enumerate(t))e[i]=this.getMonomerSymbolsByType(n).length;return a.DataFrame.fromColumns([a.Column.fromStrings("polymerType",t),a.Column.fromList(a.COLUMN_TYPE.INT,"count",e)])}getSummary(){const t=this.getPolymerTypes();return 0==t.length?"empty":t.map((t=>`${t} ${this.getMonomerSymbolsByType(t).length}`)).join("\n")}static overrideCounter=0;override(t,e){return new en(t,`override: ${++tn.overrideCounter}, ${e}`,this)}}class en extends Xe{data;base;constructor(t,e,n){super(t,e),this.data=t,this.base=n}get onChanged(){return this.base.onChanged}getMonomerSymbolsByType(t){const e=this.base.getMonomerSymbolsByType(t);for(const n of Object.keys(this.data[t]??{}))e.includes(n)||e.push(n);return e}addMissingMonomer(t,e){return this.base.addMissingMonomer(t,e)}getMonomer(t,e){const n=this.data[t]?.[e];return n??this.base.getMonomer(t,e)}}class nn{monomerLib;symbol;polymerType;monomerType;monomerLinks;monomers;error=null;constructor(t,e,n,i,o){this.monomerLib=t,this.symbol=e,this.polymerType=n,this.monomerType=i,this.monomerLinks=o;try{this.monomers=this.monomerLinks.map((t=>{const n=this.monomerLib.getMonomer(this.polymerType,t.symbol);if(!n)throw new Error("Monomer not found: ");if(n.lib?.source!=t.source)throw new Error(`Monomer '${e}' found in different library.`);return n}))}catch(t){const[e,n]=(0,Ct.AP)(t);this.error=e,this.monomers=[]}}}class on{description;placeholders;source;error;constructor(t,e,n=void 0,i=void 0){this.description=t,this.placeholders=e,this.source=n,this.error=i}updateSets(t,e=!1){e&&(this.placeholders=[]);for(const e of t)e.error||this._updateSetInt(e)}_updateSetInt(t){for(const e of t.placeholders)this.placeholders.push(e)}}var rn=n(7433),sn=n.n(rn),an=n(1913),ln=n.n(an);class cn{helmMonomerSchema;validateMonomerSchema;constructor(t){this.helmMonomerSchema=t;const e=new(sn())({allErrors:!0,strictTuples:!1,allowUnionTypes:!0});ln()(e),this.validateMonomerSchema=e.compile(this.helmMonomerSchema)}validateFile(t,e){const n=this.parseJson(t,e);return null!==n&&(Array.isArray(n)?this.validateJsonContent(n,e):(console.warn(`Bio: Monomer Library File Validator file '${e}': Invalid JSON format: The file must contain an array of monomers.`),!1))}parseJson(t,e){try{return JSON.parse(t)}catch(t){return console.error(`Bio: Monomer Library File Validator file '${e}': Invalid JSON format:`,t),null}}validateJsonContent(t,e){let n=!0;const i=new Set;for(const o of t){const t=o.symbol??o.id??o.name??"#N/A";if(n=this.validateMonomerSchema(o),!n){console.warn(`Bio: Monomer Library File Validator file ${e}, monomer '${t}' violating JSON schema:`,o,"\nError reason: ",JSON.stringify(this.validateMonomerSchema.errors??{}),`\nThere may be other errors in ${e} since the validation is stopped after the first error.`," Please, verify that the monomer library file satisfies the JSON schema");break}const r=`${o.polymerType??""}-${t}`;i.has(r)&&console.warn(`Bio: Monomer Library File Validator file ${e}, monomer '${t}' is duplicated.`,"Please, verify that the monomer library file does not contain duplicated monomer symbols."),i.add(r)}return n}}var hn=n(8604);class un{fileValidator;libHelper;eventManager;logger;filesPromise=Promise.resolve();initializedPromise=Promise.resolve();constructor(t,e,n,i){let o;this.fileValidator=t,this.libHelper=e,this.eventManager=n,this.logger=i;let r=!1;this.initializedPromise=Promise.race([a.delay(1e3),new Promise((t=>o=t))]),this.eventManager.updateValidLibraryFileListRequested$.subscribe((()=>{this.updateValidLibList().then((()=>{})),r||(r=!0,o())})),this.eventManager.updateValidSetFileListRequested$.subscribe((()=>{this.updateValidSetList().then((()=>{}))}))}static objCounter=-1;objId=++un.objCounter;toLog(){return`MonomerLibFileManager<${this.objId}>`}static async create(t,e,n){const i=await r.dapi.files.readAsText(hn.gt),o=JSON.parse(i),s=new cn(o);return new un(s,t,e,n)}async addLibraryFile(t,e,n=!0){try{if(await r.dapi.files.exists(hn.so+`${e}`))return void r.shell.error(`File ${e} already exists`);await this.validateAgainstHELM(t,e),await r.dapi.files.writeAsText(hn.so+`${e}`,t),await this.updateValidLibList(),await r.dapi.files.exists(hn.so+`${e}`)?r.shell.info(`Added ${e} HELM library`):r.shell.error(`Failed to add ${e} library`)}catch(t){console.error(t),r.shell.error(`Failed to add ${e} library`)}}async deleteLibraryFile(t){try{await r.dapi.files.delete(hn.so+`${t}`),await this.updateValidLibList(),r.shell.info(`Deleted ${t} library`)}catch(e){console.error(e),await r.dapi.files.exists(hn.so+`${t}`)?r.shell.error(`Failed to delete ${t} library`):r.shell.warning(`File ${t} already deleted, refresh the list`)}}async loadLibraryFromFile(t,e){let n=[];const i=new a.FileSource(t),o=await i.readAsText(e);n=JSON.parse(o);const r={},s=[];return n.forEach((t=>{const e=t.polymerType,n=t.symbol;s.includes(e)||(r[e]={},s.push(e)),r[e][n]=t})),new tn(r,e)}async loadSetFromFile(t,e,n){let i={};const o=new a.FileSource(e),r=await o.readAsText(n);i=JSON.parse(r);const s=i.description,l=Object.entries(i.placeholders).map((([e,n])=>{const i=e,o=n.polymerType,r=n.monomerType,s=n.set;return new nn(t,i,o,r,s)}));return new on(s,l)}getValidLibraryPaths(){return this.eventManager.getValidLibPathList()}getValidSetPaths(){return this.eventManager.getValidSetPathList()}async getValidLibraryPathsAsynchronously(){return await this.eventManager.getValidLibraryPathsAsynchronously()}async updateValidLibList(){const t=`${this.toLog()}.updateValidLibList()`;return this.logger.debug(`${t}, start`),this.filesPromise=this.filesPromise.then((async()=>{this.logger.debug(`${t}, IN`);const e=[],n=await this.getLibFileListAtLocation();if(!this.libListHasChanged(n))return void this.logger.debug(`${t}, end, not changed`);for(const t of n){if(!t.endsWith(".json")){e.push(t);continue}const n=await r.dapi.files.readAsText(hn.so+`${t}`);this.isValidHELMLibrary(n,t)||e.push(t)}const i=n.filter((t=>!e.includes(t)));if(this.libListHasChanged(i)&&(this.eventManager.changeValidLibPathList(i),await this.libHelper.loadMonomerLib(!0)),i.some((t=>!t.endsWith(".json")))&&this.logger.warning(`Wrong validation: ${i}`),e.length>0){const t=`Invalid monomer library files in ${hn.so}, consider fixing or removing them: ${e.join(", ")}`;this.logger.warning(t)}this.logger.debug(`${t}, OUT`)})),this.logger.debug(`${t}, end`),this.filesPromise}async updateValidSetList(){const t=`${this.toLog()}.updateValidSetList()`;return eo.logger.debug(`${t}, start`),this.filesPromise=this.filesPromise.then((async()=>{eo.logger.debug(`${t}, IN`);const e=[],n=await this.getSetFileListAtLocation();if(!this.setListHasChanged(n))return void eo.logger.debug(`${t}, end, not changed`);for(const t of n)t.endsWith(".json")?await r.dapi.files.readAsText(hn.Es+`${t}`):e.push(t);const i=n.filter((t=>!e.includes(t)));this.setListHasChanged(i)&&(this.eventManager.changeValidSetPathList(i),this.libHelper.loadMonomerSets(!0)),eo.logger.debug(`${t}, OUT`)})),eo.logger.debug(`${t}, end`),this.filesPromise}libListHasChanged(t){const e=this.eventManager.getValidLibPathList();return t.length!==e.length||t.some(((t,n)=>t!==e[n]))}setListHasChanged(t){const e=this.eventManager.getValidSetPathList();return t.length!==e.length||t.some(((t,n)=>t!==e[n]))}async validateAgainstHELM(t,e){if(!this.isValidHELMLibrary(t,e))throw new Error(`File ${e} does not satisfy HELM standard`)}isValidHELMLibrary(t,e){return this.fileValidator.validateFile(t,e)}async getLibFileListAtLocation(){const t=`${this.toLog()}.getLibFileListAtLocation()`;this.logger.debug(`${t}, start`);const e=await r.dapi.files.list(hn.so).then((t=>t.filter((t=>t.isFile)).map((t=>t.fullPath)))),n=[];return n.push(...e),n.map((t=>t.substring(hn.so.length)))}async getSetFileListAtLocation(){const t=`${this.toLog()}.getSetFileListAtLocation()`;this.logger.debug(`${t}, start`);const e=await r.dapi.files.list(hn.Es).then((t=>t.map((t=>t.fullPath)))),n=[];return n.push(...e),n.map((t=>t.substring(hn.Es.length)))}}class dn{constructor(){}static _instance;static getInstance(){return dn._instance||(dn._instance=new dn),dn._instance}_libFilesUpdateSubject$=new h.BehaviorSubject([]);_setFilesUpdateSubject$=new h.BehaviorSubject([]);_addLibraryFilesSubject$=new h.Subject;_librarySelectionSubject$=new h.Subject;getValidLibPathList(){return this._libFilesUpdateSubject$.getValue()}getValidSetPathList(){return this._setFilesUpdateSubject$.getValue()}async getValidLibraryPathsAsynchronously(){return new Promise((t=>{const e=this._libFilesUpdateSubject$.pipe((0,R.skip)(1)).subscribe((n=>{t(n),e.unsubscribe()}))}))}changeValidLibPathList(t){this._libFilesUpdateSubject$.next(t)}changeValidSetPathList(t){this._setFilesUpdateSubject$.next(t)}get updateUIControlsRequested$(){return this._libFilesUpdateSubject$.pipe()}get updateValidLibraryFileListRequested$(){return this._libFilesUpdateSubject$.pipe()}get updateValidSetFileListRequested$(){return this._setFilesUpdateSubject$.pipe()}get addLibraryFileRequested$(){return this._addLibraryFilesSubject$.pipe()}addLibraryFile(){this._addLibraryFilesSubject$.next()}get librarySelectionRequested$(){return this._librarySelectionSubject$}updateLibrarySelectionStatus(t,e){this._librarySelectionSubject$.next([t,e])}}class pn{logger;_monomerLib=new tn({},"MAIN");_monomerSets=new on("MAIN",[]);_initialLoadCompleted=!1;get initialLoadCompleted(){return this._initialLoadCompleted}_eventManager;get eventManager(){return this._eventManager}async awaitLoaded(t=1/0){return t=t===1/0?6e4:t,await Promise.race([(async()=>{const t=await this.getFileManager();return await t.filesPromise,!0})(),(async()=>(await(0,te.cb)(t),!1))()]).then((e=>{if(!e)throw new Error(`Loading monomer libraries timeout ${t} ms.`)}))}constructor(t){this.logger=t}static objCounter=-1;objId=(()=>{if(++pn.objCounter>0)throw new Error("MonomerLibManager MUST be a singleton.");return pn.objCounter})();toLog(){return`MonomerLibManager<${this.objId}>`}getMonomerLib(){return this._monomerLib}getBioLib(){return this.getMonomerLib()}getMonomerSets(){return this._monomerSets}get duplicateMonomers(){return this._monomerLib.duplicateMonomers}get duplicatesHandled(){return this._monomerLib.duplicatesHandled}assignDuplicatePreferances(t){this._monomerLib.assignDuplicatePreferences(t)}_fileManagerPromise;async getFileManager(){return void 0===this._fileManagerPromise&&(this._fileManagerPromise=(async()=>{const t=await un.create(this,this._eventManager,this.logger);return await t.initializedPromise,t})()),this._fileManagerPromise}loadLibrariesPromise=Promise.resolve();async loadMonomerLib(t=!1){const e=`${this.toLog()}.loadMonomerLib()`;return this.logger.debug(`${e}, start`),this.loadLibrariesPromise=this.loadLibrariesPromise.then((async()=>{this.logger.debug(`${e}, IN`);const n=a.TaskBarProgressIndicator.create("Loading monomers ...");try{const[[e],i]=await Promise.all([await this.getFileManager().then((t=>[t.getValidLibraryPaths()])),(0,Nt.ub)()]),o=e.filter((t=>{const e=!i.exclude.includes(t),n=0===i.explicit.length||i.explicit.includes(t);return e&&n}));let r=0;const s=o.length,[a]=await Promise.all([Promise.all(o.map((t=>this.readLibrary(hn.so,t).catch((e=>{const n=`Loading monomers from '${t}' error: ${e instanceof Error?e.message:e.toString()}`;return new tn({},t,n)})).finally((()=>{n.update(Math.round(100*++r/s),`Loading monomers ${r}/${s}`)})))))]);this._monomerLib.updateLibs(a,t),this._initialLoadCompleted=!0}catch(t){const e=`Loading monomer libraries error: ${t instanceof Error?t.message:t.toString()}`;r.shell.warning(e);const n=t instanceof Error?t.stack:void 0;this.logger.error(e,void 0,n)}finally{n.close(),this.logger.debug(`${e}, OUT`)}})),this.logger.debug(`${e}, end`),this.loadLibrariesPromise}async loadLibraries(t){return this.loadMonomerLib(t)}loadSetsPromise=Promise.resolve();async loadMonomerSets(t=!1){const e=`${this.toLog()}.loadMonomerSets()`;return this.logger.debug(`${e}, start`),this.loadSetsPromise=this.loadSetsPromise.then((async()=>{this.logger.debug(`${e}, IN`);const t=a.TaskBarProgressIndicator.create("Loading monomer sets ...");try{const[[e]]=await Promise.all([await this.getFileManager().then((t=>[t.getValidSetPaths()]))]),n=e.filter((t=>!0));let i=0;const o=n.length,[r]=await Promise.all([Promise.all(n.map((e=>this.readSet(hn.Es,e).catch((t=>{const n=`Loading monomer sets from '${e}' error: ${t instanceof Error?t.message:t.toString()}`;return new on("Broken monomer set",[],e,n)})).finally((()=>{t.update(Math.round(100*++i/o),`Loading monomers ${i}/${o}`)})))))]);this._monomerSets.updateSets(r)}catch(t){const e=`Loading monomer sets error: ${t instanceof Error?t.message:t.toString()}`;r.shell.warning(e);const n=t instanceof Error?t.stack:void 0;this.logger.error(e,void 0,n)}finally{t.close(),this.logger.debug(`${e}, OUT`)}})),this.logger.debug(`${e}, end`),this.loadSetsPromise}async readLibrary(t,e){const n=await this.getFileManager();return await n.loadLibraryFromFile(t,e)}async readSet(t,e){const n=await this.getFileManager();return await n.loadSetFromFile(this._monomerLib,t,e)}async selectSpecifiedLibraries(t){const e=await this.getInvalidFileNames(t);if(e.length>0)throw new Error(`Cannot select libraries ${e}: no such library in the list`);const n=await(0,Nt.ub)();n.exclude=(await this.getFileManager()).getValidLibraryPaths().filter((e=>!t.includes(e))),await(0,Nt.Eu)(n)}async getInvalidFileNames(t){const e=(await this.getFileManager()).getValidLibraryPaths();return t.filter((t=>!e.includes(t)))}async loadMonomerLibForTests(){await(0,Nt.Eu)(hn.G3),await this.awaitLoaded(1e4),await this.loadMonomerLib(!0)}static async getInstance(){let t=window.$monomerLibHelperPromise;return null==t&&(t=window.$monomerLibHelperPromise=(async()=>{const t=new pn(eo.logger);return t._eventManager=dn.getInstance(),t})()),t}}var mn=n(1757),fn=n.n(mn),gn=n(3017),yn={};yn.styleTagTransform=A(),yn.setAttributes=b(),yn.insert=g().bind(null,"head"),yn.domAPI=m(),yn.insertStyleElement=w(),d()(gn.A,yn),gn.A&&gn.A.locals&&gn.A.locals;var bn=n(3151);class vn{constructor(t,e=[],n={}){this.onItemChanged=new h.Subject,this.onAddingItemChanged=new h.Subject,this.onItemAdded=new h.Subject,this.onItemRemoved=new h.Subject,this.options={removeButtonTooltip:"Remove item",addButtonTooltip:"Add item",allowAdd:!0,allowRemove:!0},this.addingItemInputs={},this.properties=t,this.options=Object.assign(Object.assign({},this.options),n),this._root=s.divV([],{style:{display:"grid",gridTemplateColumns:`repeat(${this.properties.length}, 1fr)`,alignItems:"center",gap:"12px"},classes:"ui-items-grid"}),this._items=e,this.render()}get root(){return this._root}get items(){return this._items}set items(t){this._items=t,this.render()}addItem(t,e=!0){this._items.push(t),this.render(),e&&this.onItemAdded.next(t)}removeItem(t,e=!0){-1!==this._items.indexOf(t)&&(this._items.splice(this._items.indexOf(t),1),this.render(),e&&this.onItemRemoved.next(t))}removeAtIndex(t,e=!0){if(t<0||t>=this._items.length)return;const n=this._items.splice(t,1);this.render(),e&&this.onItemRemoved.next(n[0])}removeAllItems(){this._items=[],this.render()}render(){var t,e,n,i,o;if(s.empty(this._root),!this.options.horizontalInputNames)for(const n of this.properties){let i=null!==(t=n.caption)&&void 0!==t?t:n.name;(null===(e=this.options.customLabels)||void 0===e?void 0:e[n.name])&&(i=this.options.customLabels[n.name]);const o=s.divText(i);o.style.fontWeight="bold",this._root.appendChild(o)}for(const t of this._items){const e=this.getItemDiv(t);for(const t of e)this._root.appendChild(t)}if(this.options.allowAdd){const t=this.getItemDiv(null!==(o=null===(i=(n=this.options).newItemFunction)||void 0===i?void 0:i.call(n))&&void 0!==o?o:void 0,!0);for(const e of t)this._root.appendChild(e)}}get addingItem(){const t={};return Object.keys(this.addingItemInputs).forEach((e=>{t[e]=this.addingItemInputs[e].value})),t}getItemDiv(t={},e){var n,i;const o=[],r={};let l=null;for(const c of this.properties){void 0===t[c.name]&&(t[c.name]=null);const h=(null===(n=this.options.customInputs)||void 0===n?void 0:n[c.name])?this.options.customInputs[c.name](t):s.input.forProperty(c,t),u=null===(i=this.options.validators)||void 0===i?void 0:i[c.name];u&&h.addValidator(u),o.push(this.options.horizontalInputNames?h.root:this.hideLabel(h.root)),c.propertyType!==a.TYPE.BOOL&&"color"!==c.name.toLowerCase()&&h.input&&(h.input.style.width="100%"),r[c.name]=h,h.onChanged.subscribe((()=>{t[c.name]=h.value,e?this.onAddingItemChanged.next({item:t,fieldName:c.name}):this.onItemChanged.next({item:t,fieldName:c.name})})),h.root.style.alignItems="center",l=h}let c=null;if(e)this.addingItemInputs=r,c=s.icons.add((()=>{const t=this.options.newItemFunction?this.options.newItemFunction():{};Object.keys(r).forEach((e=>{t[e]=r[e].value})),this._items.push(t),this.onItemAdded.next(t),this.render()}),this.options.addButtonTooltip);else{if(!this.options.allowRemove)return o;c=s.icons.delete((()=>{this._items.splice(this._items.indexOf(t),1),this.onItemRemoved.next(t),this.render()}),this.options.removeButtonTooltip)}return l&&l.addOptions?l.addOptions(c):null==l||l.root.appendChild(c),c.style.color="#2083d5",o}hideLabel(t){return t.getElementsByTagName("label")[0]&&t.removeChild(t.getElementsByTagName("label")[0]),t}hasErrors(){return this._root.querySelectorAll(".d4-invalid").length>0}}const wn={A:new V.A(new Uint32Array([2,0,0,0,16,0,0,0,134217728,0,0,0,32,0,33554432,0,0,0,0,0,1024,0,0,0,262144,128,0,0,0,0,0,0,0,2,0,0,524288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1048576,0,536870912,0,0,0,0]),2048),C:new V.A(new Uint32Array([2,0,65536,0,0,0,0,32,0,0,2,0,32,0,0,0,0,0,0,0,1024,0,0,0,262144,128,0,0,0,0,0,0,0,65536,0,0,524288,0,0,0,0,0,0,0,524288,524288,0,0,0,0,0,0,0,0,0,0,0,34603008,0,536870912,64,0,0,0]),2048),D:new V.A(new Uint32Array([2,0,65600,0,0,0,0,0,0,0,0,0,32,0,0,0,0,0,0,0,1024,0,0,0,262400,128,0,0,0,0,0,0,0,0,0,2097152,524288,0,0,0,1024,0,0,0,524288,0,0,0,0,0,0,0,0,0,512,0,0,34603008,0,536870912,0,0,0,0]),2048),E:new V.A(new Uint32Array([2,0,65536,0,0,0,0,0,0,0,0,0,32,0,0,0,0,0,0,0,1024,0,0,8,262144,128,0,0,16,134217728,0,0,0,0,0,0,524288,0,0,0,128,0,0,0,524288,0,0,0,268435456,0,0,0,0,0,512,2147483648,0,34603008,0,536870912,0,0,0,0]),2048),F:new V.A(new Uint32Array([2,0,98304,0,0,0,0,0,0,0,0,0,32,0,0,0,0,0,0,0,1024,0,0,0,262144,128,33554432,0,0,0,0,33554432,0,1024,1,0,524288,32768,32,0,0,0,0,16,524288,0,0,0,0,0,0,0,0,0,71303168,0,0,34603008,131072,536870912,0,0,0,0]),2048),G:new V.A(new Uint32Array([134217728,0,65536,0,0,0,0,0,0,0,0,0,32,0,0,0,0,0,0,0,1024,0,0,0,0,128,0,0,0,0,2097216,0,0,0,0,0,524288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,512,0,0,0,0,536870912,0,0,0,0]),2048),H:new V.A(new Uint32Array([2,0,1073840128,0,0,0,0,0,0,0,0,67108864,32,0,0,0,0,0,0,0,1024,0,512,0,262144,192,0,268435456,0,0,8200,0,0,0,67108864,0,524296,0,32,0,0,0,0,16,524288,0,0,2147483648,0,0,8,0,0,0,0,0,0,34603008,131072,536870920,4194304,0,0,0]),2048),I:new V.A(new Uint32Array([2,0,65536,0,0,0,0,0,150994944,64,0,0,32,0,0,0,0,0,0,0,1024,0,8388608,0,327680,128,0,0,0,0,0,0,0,2,0,524288,524288,0,0,0,0,0,0,0,0,0,0,0,256,0,0,0,0,8388608,0,33554432,0,1048576,0,536870912,0,0,0,0]),2048),K:new V.A(new Uint32Array([2,0,65536,0,0,0,0,0,0,0,0,0,268435488,0,0,0,0,0,0,0,1024,0,0,8,262144,128,0,0,0,0,2097152,0,0,67108864,0,0,524288,0,0,0,8,0,0,0,524288,0,0,8192,0,0,0,0,0,0,0,2147483648,0,34668544,0,545259520,0,0,0,0]),2048),L:new V.A(new Uint32Array([2,0,65536,0,0,0,0,0,134217728,0,0,0,32,512,0,0,0,0,0,0,1024,256,0,8388608,262400,128,0,0,0,0,0,0,0,2,0,0,524288,0,0,0,0,0,0,0,524288,0,0,0,0,0,0,0,0,0,0,0,0,42991616,0,536870912,0,0,0,0]),2048),M:new V.A(new Uint32Array([2050,0,65536,1048576,0,0,0,0,0,0,0,0,1056,0,0,0,0,0,0,0,1024,0,0,8,262144,128,0,0,0,0,0,536870912,0,2,0,0,1074266112,0,0,0,0,0,0,0,524288,0,0,0,4194304,0,0,0,0,0,0,2147483648,0,34603008,0,536870912,4194304,0,0,0]),2048),N:new V.A(new Uint32Array([2,0,65536,0,4096,0,0,0,0,0,0,16777216,32,0,0,0,0,0,0,0,1024,0,0,0,262400,128,0,0,0,0,0,0,0,0,0,0,524288,0,0,0,1024,0,0,0,524288,0,0,0,0,0,0,0,0,0,0,0,0,34603008,0,536871936,67108864,0,0,0]),2048),P:new V.A(new Uint32Array([0,0,1024,0,0,0,0,0,0,131072,0,1024,32,0,0,0,0,512,0,0,1024,0,0,64,0,128,0,0,1073741824,0,0,138412032,16,0,67108864,0,0,0,0,0,0,8192,0,0,8388608,0,0,8,0,0,0,0,0,0,256,0,0,0,0,553648128,0,0,0,0]),2048),Q:new V.A(new Uint32Array([2,0,65536,0,4096,0,0,0,0,0,0,0,32,0,0,0,0,2,0,0,1024,0,0,8,262144,128,0,0,16,0,0,0,0,0,0,0,524288,0,0,0,0,0,0,0,524288,0,0,0,268435456,0,0,0,0,0,16777216,2147483648,0,34603008,0,536871936,0,0,0,0]),2048),R:new V.A(new Uint32Array([2,0,65536,0,4096,0,32,0,0,0,0,0,268435488,0,0,0,0,0,0,32768,134218752,0,16,8,262144,128,0,1073741824,0,0,8388608,0,0,0,65536,0,524289,0,0,0,0,0,0,0,524288,2048,0,0,0,0,0,0,0,0,0,2147483648,0,34603008,1048576,545259520,0,0,0,0]),2048),S:new V.A(new Uint32Array([2,0,65536,0,0,0,1073741824,0,0,0,0,0,32,0,0,4,0,0,0,0,1024,0,0,0,262144,128,0,0,0,0,0,0,0,0,0,0,524288,0,0,1048576,0,0,0,0,524288,0,0,0,0,0,0,0,0,0,8388608,0,0,34603008,0,536870912,0,0,0,0]),2048),T:new V.A(new Uint32Array([2,0,0,0,0,0,0,8,134217728,0,0,67108864,32,0,0,0,0,0,0,0,1024,0,8388608,0,262144,128,0,0,0,0,0,0,0,2,0,524288,524288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,536870912,0,0,0,0,1048576,67108864,536870912,0,0,0,0]),2048),V:new V.A(new Uint32Array([2,0,0,0,0,0,0,0,134217728,0,0,0,32,0,0,0,0,0,0,0,1024,0,8388608,0,262144,128,0,0,0,0,0,1073741824,128,2,0,524288,524288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8192,0,1048576,0,536870912,0,0,0,0]),2048),W:new V.A(new Uint32Array([2,0,98304,8388608,0,0,0,0,0,0,256,4096,32,0,0,0,0,0,0,0,1024,0,0,0,262144,192,0,0,0,0,0,0,0,0,67108865,0,524288,32768,32,0,0,0,8224,16,524288,0,0,0,0,32,128,0,2097152,0,4194304,8388608,0,34603008,8519680,536870912,131072,262144,0,0]),2048),Y:new V.A(new Uint32Array([2,0,98304,0,0,0,0,0,0,4194304,0,0,32,0,0,0,0,0,0,0,1024,0,0,512,262144,128,33554432,0,0,0,0,33554432,0,0,0,0,524288,0,32,0,0,2,0,16,524288,0,0,0,0,0,4,0,0,0,71303168,262144,0,34603008,131072,536870912,0,0,0,0]),2048)},Cn={RNA:{A:new V.A(new Uint32Array([0,0,0,0,0,0,0,0,0,1024,0,67108864,0,0,0,512,0,0,0,8388608,0,0,512,0,0,64,4,0,0,0,4,0,0,0,67108864,0,524289,0,0,0,0,0,0,16,0,659456,0,256,0,16,0,0,0,268435456,0,0,262144,0,131072,0,0,0,8388608,0]),2048),C:new V.A(new Uint32Array([0,1073741824,0,0,0,0,0,2147483648,4,67108864,0,67108864,0,256,0,0,0,0,0,0,1024,0,128,0,0,64,0,0,0,0,0,0,0,0,67108864,0,524289,0,65536,0,0,0,0,16,0,131072,0,4,0,0,0,0,0,0,4194304,0,0,2147483648,131072,0,4096,0,0,0]),2048),G:new V.A(new Uint32Array([0,0,0,0,1024,0,0,0,0,67109888,16384,67108864,0,0,0,0,0,0,0,33562624,1024,33554432,512,16384,0,64,4,0,0,33554432,0,0,0,0,67108864,0,524289,0,0,0,0,0,0,16,0,135168,0,268435456,0,0,0,0,0,268435456,131072,0,0,2147483648,131072,0,0,0,8388608,0]),2048),T:new V.A(new Uint32Array([8388608,0,0,0,0,0,0,0,0,67108864,0,0,0,4,0,0,0,0,0,0,1024,0,0,16384,0,64,0,0,0,0,0,0,0,2,67108864,0,0,0,0,0,0,0,0,40976,0,0,0,0,0,0,0,0,0,67108864,131072,524288,0,0,8519680,0,1,33554432,1048576,0]),2048),U:new V.A(new Uint32Array([0,0,131072,1073741824,0,0,0,0,0,67108864,0,0,0,0,0,0,0,0,0,0,1024,0,128,0,0,64,0,0,0,0,0,0,0,32768,67108864,0,0,0,0,0,0,0,0,16,0,0,0,4,0,0,2048,0,0,0,4341760,0,0,0,131072,0,0,33554432,1048576,0]),2048)},PEPTIDE:wn};async function An(t,e,n=0){if(!Object.keys(Cn).includes(e))return null;const i=await async function(t){const e=a.Func.find({package:"Chem",name:"getMorganFingerprint"})?.[0];if(!e)return null;try{const n=(await e.apply({molString:t}))?.getBuffer().buffer;if(n)return new V.A(new Uint32Array(n),2048)}catch(t){return null}}(t);if(!i)return null;if(!Cn[e])return null;const o=Cn[e];let r=0,s=null;for(const[t,e]of Object.entries(o)){const o=(0,k.$1)(i,e);o>r&&o>=n&&(r=o,s=t)}return s}var Sn,xn=n(857),En={};En.styleTagTransform=A(),En.setAttributes=b(),En.insert=g().bind(null,"head"),En.domAPI=m(),En.insertStyleElement=w(),d()(xn.A,En),xn.A&&xn.A.locals&&xn.A.locals,function(t){t.MONOMER="Monomer",t.SYMBOL="Symbol",t.NAME="Name",t.R_GROUPS="~R-Groups",t.MONOMER_TYPE="Monomer Type",t.POLYMER_TYPE="Polymer Type",t.NATURAL_ANALOG="Natural Analog",t.AUTHOR="Author",t.CREATE_DATE="Create Date",t.ID="ID",t.META="Meta",t.SOURCE="Source"}(Sn||(Sn={}));const Tn={[Sn.MONOMER]:a.COLUMN_TYPE.STRING,[Sn.SYMBOL]:a.COLUMN_TYPE.STRING,[Sn.NAME]:a.COLUMN_TYPE.STRING,[Sn.R_GROUPS]:a.COLUMN_TYPE.STRING,[Sn.MONOMER_TYPE]:a.COLUMN_TYPE.STRING,[Sn.POLYMER_TYPE]:a.COLUMN_TYPE.STRING,[Sn.NATURAL_ANALOG]:a.COLUMN_TYPE.STRING,[Sn.AUTHOR]:a.COLUMN_TYPE.STRING,[Sn.CREATE_DATE]:a.COLUMN_TYPE.DATE_TIME,[Sn.ID]:a.COLUMN_TYPE.INT,[Sn.META]:a.COLUMN_TYPE.STRING,[Sn.SOURCE]:a.COLUMN_TYPE.STRING};class _n{monomerLibManamger;adjustTable(){this.tv?.dataFrame&&(r.data.detectSemanticTypes(this.tv.dataFrame),this.tv.dataFrame.meta.detectSemanticTypes()),setTimeout((()=>{this.tv?.grid&&(this.tv.grid.props.allowEdit=!1,this.tv.grid.col(Sn.NAME).width=100,this.tv.grid.col(Sn.SYMBOL).width=70)}),200)}static VIEW_NAME="Manage Monomers";_newMonomer=bn.pe;_newMonomerForm;monomerLib;tv=null;libInput;static instance;activeMonomerLib=null;constructor(t){this.monomerLibManamger=t,this.monomerLib=t.getBioLib(),this._newMonomerForm=new Pn(t,(()=>this.activeMonomerLib),(async t=>{const e=await this.getMonomersDf(this.libInput.value);this.tv?.dataFrame&&(this.tv.dataFrame=e,this.adjustTable(),null!=t&&setTimeout((()=>{const n=e.col(Sn.SYMBOL).toList().indexOf(t);-1!==n&&(this.tv?.grid.scrollToCell(e.columns.byIndex(0),n),e.currentRow=e.rows.get(n))}),500))}),(()=>this.tv?.dataFrame))}static async getInstance(){if(!this.instance){const t=await pn.getInstance();await t.awaitLoaded(),await t.loadLibrariesPromise,this.instance=new _n(t)}return this.instance}static async getNewInstance(){const t=await pn.getInstance();return await t.awaitLoaded(),await t.loadLibrariesPromise,new _n(t)}async createNewMonomerLib(t,e){this.tv?.grid&&s.setUpdateIndicator(this.tv.grid.root,!0);try{const n=JSON.stringify(e.map((t=>({...t,lib:void 0,wem:void 0}))),null,2);t.endsWith(".json")||(t+=".json"),await(await this.monomerLibManamger.getFileManager()).addLibraryFile(n,t),await r.dapi.files.writeAsText(hn.so+t,n),await this.monomerLibManamger.loadLibraries(!1),r.shell.v=await this.getViewRoot(t)}catch(t){r.shell.error("Error creating library"),console.error(t)}finally{this.tv?.grid&&s.setUpdateIndicator(this.tv.grid.root,!1)}}async createNewLibDialog(t){const e=(await this.monomerLibManamger.getFileManager()).getValidLibraryPaths(),n=s.input.string("Library Name",{placeholder:"Enter library name",nullable:!1,onValueChanged:()=>{const t=i(n.value);o.getButton("Create")?.classList?.toggle("d4-disabled",!!t)}});function i(t){return t&&t.trim()?t.endsWith(".json")&&e.includes(t)||e.includes(t+".json")?"Library with this name already exists":null:"Library name cannot be empty"}n.addValidator(i);const o=s.dialog("Create New Library").add(n).addButton("Create",(async()=>{const e=i(n.value);if(e)r.shell.warning(e);else{try{await this.createNewMonomerLib(function(){let t=n.value;return t.endsWith(".json")||(t+=".json"),t}(),t??[])}catch(t){r.shell.error("Error creating library"),console.error(t)}o.close()}})).show();o.getButton("Create")?.classList?.toggle("d4-disabled",!0)}get newMonomer(){return this._newMonomer}getNewMonomerForm(){return this._newMonomerForm}async getMonomersTableView(t,e=!0){const n=await this.getMonomersDf(t);return this.tv=a.TableView.create(n,e),this.adjustTable(),this.tv.subs.push(r.events.onContextMenu.subscribe((({args:t})=>{if(!t||!t.menu||!t.context||t.context.type!==a.VIEWER.GRID||!t.context.tableView||t.context.tableView.id!==(this.tv.id??"")||!t.item||!t.item.isTableCell||(t.item.tableRowIndex??-1)<0)return;const e=t.item.tableRowIndex;t.menu.item("Edit Monomer",(async()=>{await this.editMonomer(this.tv.dataFrame.rows.get(e))})),t.menu.item("Fix all monomers",(()=>{this.fixAllMonomers()})),this.tv.dataFrame.selection.trueCount>0?(t.menu.item("Remove Selected Monomers",(async()=>{const t=await Promise.all(Array.from(this.tv.dataFrame.selection.getSelectedIndexes()).map((t=>Hn(this.tv.dataFrame.rows.get(t)))));this._newMonomerForm.removeMonomers(t,this.libInput.value)})),t.menu.item("Selection To New Library",(async()=>{const t=await Promise.all(Array.from(this.tv.dataFrame.selection.getSelectedIndexes()).map((t=>Hn(this.tv.dataFrame.rows.get(t)))));this.createNewLibDialog(t)}))):t.menu.item("Remove Monomer",(async()=>{const t=await Hn(this.tv.dataFrame.rows.get(e));this._newMonomerForm.removeMonomers([t],this.libInput.value)}))}))),this.tv.grid&&(this.tv.grid.props.allowEdit=!1),this.tv}static closeAllMonomerManagers(){Array.from(r.shell.tableViews??[]).filter((t=>t.name===_n.VIEW_NAME)).forEach((t=>t.close()))}findActiveManagerView(){if(!this.tv)return null;const t=Array.from(r.shell.tableViews??[]).find((t=>t.id===this.tv.id));return t?r.shell.v=t:_n.closeAllMonomerManagers(),t??null}_skipLibInputOnchange=!1;async getViewRoot(t,e=!0){const n=(await this.monomerLibManamger.getFileManager()).getValidLibraryPaths();if(this._newMonomerForm.molSketcher.resize(),e&&(this.tv=this.findActiveManagerView())&&(t??this.libInput.value)){try{this._skipLibInputOnchange=!0,this.libInput&&(this.libInput.items=n),t&&(this.libInput.value=t)}catch(t){r.shell.error("Error updating library list"),console.error(t)}finally{this._skipLibInputOnchange=!1}const e=await this.getMonomersDf(t);return this.tv.dataFrame=e,this.adjustTable(),this.tv}t??=n[0],this.tv=await this.getMonomersTableView(t,e);let i=this.tv.getRibbonPanels();i.forEach(((t,e)=>{i[e]=t.filter((t=>0!==t.getElementsByClassName("grok-icon-filter").length))})),i=i.filter((t=>t.length>0));const o=s.icons.add((()=>{this._newMonomerForm.setEmptyMonomer()}),"Add New Monomer"),l=s.iconFA("wand-magic",(()=>{this.fixAllMonomers()}),"Fix all monomers"),c=s.icons.edit((async()=>{(this.tv?.dataFrame?.currentRowIdx??-1)<0||await this.editMonomer(this.tv.dataFrame.rows.get(this.tv.dataFrame.currentRowIdx))}),"Edit Monomer"),h=s.icons.delete((async()=>{const t=this.tv?.dataFrame?.currentRowIdx??-1,e=Array.from(this.tv?.dataFrame?.selection?.getSelectedIndexes()??[]);if(t<0&&0===e.length)return;if(e.length>0){const t=await Promise.all(e.map((t=>Hn(this.tv.dataFrame.rows.get(t)))));return void await this._newMonomerForm.removeMonomers(t,this.libInput.value)}const n=await Hn(this.tv.dataFrame.rows.get(t));await this._newMonomerForm.removeMonomers([n],this.libInput.value)}));s.tooltip.bind(h,(()=>(this.tv?.dataFrame?.selection?.trueCount??0)>0?"Delete selected monomers":"Delete monomer"));const u=s.iconFA("arrow-to-bottom",(async()=>{const t=this.libInput.value;if(!t)return r.shell.error("No library selected");let e=null;try{e=await r.dapi.files.readAsText(hn.so+t)}catch(e){return r.shell.error(`Error reading library ${t}`),console.error(e)}if(!e)return r.shell.error(`Library ${t} is empty`);a.Utils.download(t,e,"text/plain")}),"Download Monomer Library");i.push([o,c,l,h,u]),this.tv.setRibbonPanels(i),this.tv.name=_n.VIEW_NAME,this.libInput=s.input.choice("Monomer Library",{value:t,items:n,nullable:!1,onValueChanged:async()=>{try{if(this._skipLibInputOnchange)return;const t=await this.getMonomersDf(this.libInput.value);this.tv.dataFrame=t,this.adjustTable()}catch(t){console.error(t)}}}),this.libInput.addOptions(s.icons.add((()=>{this.createNewLibDialog()}),"Create new monomer library..."));const d=this._newMonomerForm.form;return d.prepend(this.libInput.root),s.tools.waitForElementInDom(this.tv.root).then((()=>{this.tv.dockManager.dock(d,a.DOCK_TYPE.LEFT,null,void 0,.4)})),this.tv}async editMonomer(t){return this._newMonomer=await Hn(t),this._newMonomerForm.setMonomer(this._newMonomer),this._newMonomer}async getMonomersDf(t){this.tv?.grid&&s.setUpdateIndicator(this.tv.grid.root,!0);try{if(t??=(await this.monomerLibManamger.getFileManager()).getValidLibraryPaths()[0],this.activeMonomerLib=await this.monomerLibManamger.readLibrary(hn.so,t),!this.activeMonomerLib)return r.shell.error(`Library ${t} not found`),a.DataFrame.create();const e=this.activeMonomerLib.getPolymerTypes().flatMap((t=>this.activeMonomerLib.getMonomerSymbolsByType(t).map((e=>this.activeMonomerLib.getMonomer(t,e))))),n=a.DataFrame.create(e.length),i=new Set;for(const t of e)t.rgroups.forEach((t=>{t.label&&i.add(t.label)}));const o=Array.from(i);o.sort();for(const[t,e]of Object.entries(Tn))if(n.columns.addNew(t,e),t===Sn.R_GROUPS)for(const t of o)n.columns.addNew(t,a.COLUMN_TYPE.STRING);n.col(Sn.SYMBOL).semType="Monomer",n.col(Sn.SYMBOL).setTag(Rt.Mn.applyToBackground,"true");for(let t=0;t<e.length;t++){let i=Rn(e[t].rgroups,e[t].smiles,e[t].molfile);i=Mn(i),e[t].rgroups=Nn(e[t].rgroups);const r=o.map((n=>{const i=e[t].rgroups.find((t=>t.label===n));return i?Ln(i,"capGroupSmiles"):""}));let s=null;if(e[t].createDate)try{s=Date.parse(e[t].createDate)}catch(n){console.error(`Error parsing date ${e[t].createDate}`)}n.rows.setValues(t,[i,e[t].symbol,e[t].name,JSON.stringify(e[t].rgroups??[]),...r,e[t].monomerType,e[t].polymerType,e[t].naturalAnalog,e[t].author,s,e[t].id,JSON.stringify(e[t].meta??{}),e[t].lib?.source??""]);try{s&&n.col(Sn.CREATE_DATE)?.set(t,s,!1)}catch(n){console.error(`Error setting date ${e[t].createDate}`)}}return n.col(Sn.MONOMER).semType=a.SEMTYPE.MOLECULE,o.forEach((t=>{n.col(t).semType=a.SEMTYPE.MOLECULE})),n.currentRowIdx=-1,n.onCurrentRowChanged.subscribe((async t=>{try{if(-1===n.currentRowIdx||this._newMonomerForm.molChanged)return;await this.editMonomer(n.rows.get(n.currentRowIdx))}catch(t){console.error(t)}})),n}catch(t){throw r.shell.error("Error creating monomers dataframe"),console.error(t),t}finally{this.tv?.grid&&s.setUpdateIndicator(this.tv.grid.root,!1)}}async fixAllMonomers(){s.dialog("Fix All Monomers").add(s.divText("This action will fix all monomers in the library, standardize their smiles, molblocks and r-groups, assign correct natural analogs and save the library.")).add(s.divText("Do you wish to continue?")).onOK((async()=>{const t=this.tv?.dataFrame;let e=this.libInput.value;if(t&&e){this.tv?.grid&&s.setUpdateIndicator(this.tv.grid.root,!0);try{const n=await Promise.all(new Array(t.rowCount).fill(0).map(((e,n)=>Hn(t.rows.get(n))))),i=JSON.stringify(n.map((t=>({...t,lib:void 0,wem:void 0}))),null,2);e.endsWith(".json")||(e+=".json"),await r.dapi.files.writeAsText(hn.so+e,i),await this.monomerLibManamger.loadLibraries(!0),r.shell.v=await this.getViewRoot(e)}catch(t){r.shell.error("Error saving library"),console.error(t)}finally{this.tv?.grid&&s.setUpdateIndicator(this.tv.grid.root,!1)}}else r.shell.error("No monomer library loaded")})).show()}resetCurrentRowFollowing(){this._newMonomerForm.molChanged=!1}}function Mn(t){let e=t.replaceAll(/\[R[1-9]\]/g,(t=>`[*:${t[2]}]`));return e=e.replaceAll(/\[\d\*\]/g,(t=>`[*:${t[1]}]`)),e.replaceAll(/\[\d\*\:\d\]/g,(t=>`[*:${t[1]}]`))}const In=["alternateId","capGroupName","capGroupSMILES","label"];function Ln(t,e){const n=Object.keys(t).find((t=>t.toLowerCase()===e.toLowerCase()));if(n)return t[n]}function Nn(t){return t.map((t=>{const e=function(t,e){const n={};return t.forEach((t=>{const i=Object.keys(e).find((e=>e.toLowerCase()===t.toLowerCase()));i&&(n[t]=e[i])})),n}(In,t),n=Ln(e,"capGroupSMILES"),i=Ln(e,"alternateId"),o=Ln(e,"capGroupName"),r=Ln(e,"label")??"R1";if(n&&i&&o||r.length<2)return e;if(i&&-1!==i.indexOf(`${r}-`)){const t=i.replace(`${r}-`,"");o||(e.capGroupName=t),n||(e.capGroupSMILES=`[*:${r.substring(1)}][${t}]`)}else o&&(n||(e.capGroupSMILES=`[*:${r.substring(1)}][${o}]`),i||(e.alternateId=`${r}-${o}`));return e})).sort(((t,e)=>t.label?.localeCompare(e.label??"")??0))}class Pn{monomerLibManager;getMonomerLib;refreshTable;getMonomersDataFrame;molSketcher;monomerTypeInput;polymerTypeInput;monomerSymbolInput;monomerNameInput;monomerIdInput;monomerNaturalAnalogInput;rgroupsGrid;metaGrid;colors;colorsEditor;saveButton;rgroupsGridRoot;_molChanged=!1;get molChanged(){return this._molChanged}set molChanged(t){this._molChanged=t}saveValidationResult=null;triggerMolChange=!0;inputsTabControl;constructor(t,e,n,i){this.monomerLibManager=t,this.getMonomerLib=e,this.refreshTable=n,this.getMonomersDataFrame=i,this.colors={line:"#000000",background:"#000000",text:"#000000"},this.colorsEditor=new Gn(this.colors),this.molSketcher=new a.chem.Sketcher,this.molSketcher.root.classList.add("monomer-manager-sketcher"),this.polymerTypeInput=s.input.choice("Polymer Type",{value:"PEPTIDE",items:["PEPTIDE","RNA","CHEM","BLOB","G"],onValueChanged:()=>this.onMonomerInputChanged(),nullable:!1}),this.monomerTypeInput=s.input.choice("Monomer Type",{value:"Backbone",items:["Backbone","Branch","Terminal"],onValueChanged:()=>this.onMonomerInputChanged(),nullable:!1}),this.monomerSymbolInput=s.input.string("Monomer Symbol",{nullable:!1,onValueChanged:()=>this.onMonomerInputChanged()}),this.monomerNameInput=s.input.string("Monomer Name",{nullable:!1,onValueChanged:()=>this.onMonomerInputChanged()}),this.monomerNameInput.nullable=!1,this.monomerIdInput=s.input.int("Monomer ID",{nullable:!0,value:0,onValueChanged:()=>this.onMonomerInputChanged()}),this.monomerNaturalAnalogInput=s.input.string("Natural Analog",{nullable:!0,onValueChanged:()=>this.onMonomerInputChanged()}),this.saveButton=s.bigButton("Save",(async()=>{const t=this.validateInputs();t?r.shell.warning(t):await this.saveMonomer()})),this.molSketcher.subs.push(this.molSketcher.onChanged.subscribe((async()=>{if(this.triggerMolChange){try{this.rgroupsGridRoot.style.display="none";const t=this.inputsTabControl.panes.find((t=>"r-groups"===t.name?.toLowerCase()));t&&t.header.style.removeProperty("background-color");let e=this.molSketcher.getSmiles();if(!e)return this.rgroupsGrid.items=[],this.rgroupsGrid.render(),this.saveValidationResult="Monomer molecule is required",void this.invalidateSaveButton();e=Rn([],e);const n=this.findRgroupsInSmiles(e);if(0===n.length)return this.rgroupsGrid.items=[],this.rgroupsGrid.render(),this.saveValidationResult="At least one R-group is required",t&&t.header.style.setProperty("background-color","#ff000030"),void this.invalidateSaveButton();if(new Set(n.map((t=>t[0]))).size!==n.length)return this.saveValidationResult="Duplicate R-groups are not allowed",this.rgroupsGridRoot.style.display="flex",t&&t.header.style.setProperty("background-color","#ff000030"),void this.invalidateSaveButton();const i=n.map((t=>Number.parseInt(t[0].match(/[1-9]/g)[0]))).map((t=>this.rgroupsGrid.items.find((e=>e.label===`R${t}`))??{capGroupSMILES:`[*:${t}][H]`,alternateId:`R${t}-H`,capGroupName:"H",label:`R${t}`}));this.rgroupsGrid.items=i.sort(((t,e)=>t.label?.localeCompare(e.label??"")??0)),this.rgroupsGrid.render(),this.rgroupsGridRoot.style.display="flex";const o=await An(On(e,i),this.polymerTypeInput.value??"");o&&(this.monomerNaturalAnalogInput.value=o)}catch(t){console.error(t)}this.onMonomerInputChanged(),this._molChanged=!0}else this.triggerMolChange=!0})));const o=[a.Property.js("capGroupSMILES",a.TYPE.STRING,{caption:"R-group SMILES",nullable:!1}),a.Property.js("alternateId",a.TYPE.STRING,{caption:"Alternate ID",nullable:!1}),a.Property.js("capGroupName",a.TYPE.STRING,{caption:"R-group name",nullable:!1}),a.Property.js("label",a.TYPE.STRING,{fieldName:"R-group Label",nullable:!1,userEditable:!1})];this.rgroupsGrid=new vn(o,[],{allowAdd:!1,allowRemove:!1,validators:{capGroupSMILES:t=>t?r.chem.checkSmiles(t)?null:"Invalid SMILES":"Cap group smiles is required",alternateId:t=>t?null:"Alternate ID is required",capGroupName:t=>t?null:"Cap group name is required",label:t=>t?null:"R-group label is required"},customLabels:{capGroupSMILES:"R-group SMILES",alternateId:"Alternate ID",capGroupName:"Cap Group Name",label:"Label"}}),this.rgroupsGrid.onItemChanged.subscribe((()=>this.onMonomerInputChanged())),this.rgroupsGridRoot=s.divV([this.rgroupsGrid.root]),this.rgroupsGridRoot.style.display="none";const l=[a.Property.js("Property",a.TYPE.STRING,{caption:"Property",nullable:!0}),a.Property.js("Value",a.TYPE.STRING,{caption:"Value",nullable:!0})];this.metaGrid=new vn(l,[]),this.onMonomerInputChanged();const c=s.divV([this.polymerTypeInput,this.monomerTypeInput,this.monomerSymbolInput,this.monomerNameInput,this.monomerIdInput,this.monomerNaturalAnalogInput]);this.inputsTabControl=s.tabControl({Monomer:c,"R-groups":this.rgroupsGridRoot,Meta:s.divV([this.metaGrid.root]),Colors:this.colorsEditor.form},!1)}invalidateSaveButton(){this.saveValidationResult?this.saveButton.classList.add("d4-disabled"):this.saveButton.classList.remove("d4-disabled")}onMonomerInputChanged(){setTimeout((()=>{this.saveValidationResult=this.validateInputs(),this.invalidateSaveButton();const t=this.polymerTypeInput.value&&this.polymerTypeInput.value&&!!this.getMonomerLib()?.getMonomer(this.polymerTypeInput.value,this.monomerSymbolInput.value);this.saveButton.textContent=t?"Save Monomer":"Add Monomer"}),200)}setEmptyMonomer(){this.triggerMolChange=!1,this.molSketcher.setSmiles(""),this.monomerSymbolInput.value="",this.monomerNameInput.value="",this.monomerIdInput.value=null,this.monomerNaturalAnalogInput.value=null,this.rgroupsGrid.items=[],this.metaGrid.items=[],this.rgroupsGrid.render(),this.metaGrid.render(),this.rgroupsGridRoot.style.display="none",this.onMonomerInputChanged(),this.colorsEditor.colors={line:"#000000",background:"#000000",text:"#000000"}}setMonomer(t){this.triggerMolChange=!1,this.molSketcher.setSmiles(t.smiles),this.polymerTypeInput.value=t.polymerType,this.monomerTypeInput.value=t.monomerType,this.monomerSymbolInput.value=t.symbol,this.monomerNameInput.value=t.name,this.monomerIdInput.value=t.id,this.monomerNaturalAnalogInput.value=t.naturalAnalog??null,this.rgroupsGrid.items=Nn(t.rgroups),this.metaGrid.items=Object.entries(t.meta??{}).filter((([t,e])=>"colors"!==t?.toLowerCase())).map((([t,e])=>({Property:t,Value:e}))),this.rgroupsGrid.render(),this.metaGrid.render(),this.rgroupsGridRoot.style.display="flex",this.onMonomerInputChanged(),!t.naturalAnalog&&t.polymerType&&An(On(t.smiles,this.rgroupsGrid.items),t.polymerType).then((t=>{t&&(this.monomerNaturalAnalogInput.value=t)}));const e=t.meta?.colors??"";let n={};try{n=e?JSON.parse(e)?.default:{}}catch(t){console.error(t)}this.colorsEditor.colors={line:n.line??"#000000",background:n.background??"#000000",text:n.text??"#000000"}}validateInputs(){const t=this.inputsTabControl.panes.find((t=>"r-groups"===t.name?.toLowerCase()));if(t&&t.header.style.removeProperty("background-color"),!this.molSketcher.getSmiles())return"Monomer Molecule field is required";for(const t of[this.polymerTypeInput,this.monomerTypeInput,this.monomerSymbolInput,this.monomerNameInput])if(null==t.value||""===t.value)return`${t.caption} field is required`;let e=null;if(this.rgroupsGrid.items.length<1&&(e="At least one R-group is required"),!e)t:for(const t of this.rgroupsGrid.items)for(const[n,i]of Object.entries(t))if(!i){e=`R-group ${n} field is required for ${t.label}`;break t}return!e&&this.rgroupsGrid.hasErrors()&&(e="R-group fields contain errors"),e?(t&&t.header.style.setProperty("background-color","#ff000030"),e):null}findRgroupsInSmiles(t){return[...Array.from(t.matchAll(/\[[1-9]\*\]/g)),...Array.from(t.matchAll(/\[\*\:[1-9]\]/g))]}get form(){this.inputsTabControl.root.classList.add("monomer-manager-form-tab-control"),this.inputsTabControl.header.style.marginBottom="10px";const t=s.buttonsInput([this.saveButton]);return s.tooltip.bind(t,(()=>this.saveValidationResult??"Save monomer to library")),s.divV([this.molSketcher.root,this.inputsTabControl.root,t],{classes:"ui-form",style:{paddingLeft:"10px",overflow:"scroll",maxWidth:"unset"}})}get fieldInputs(){return{molecule:this.molSketcher,polymerType:this.polymerTypeInput,monomerType:this.monomerTypeInput,symbol:this.monomerSymbolInput,name:this.monomerNameInput,id:this.monomerIdInput,naturalAnalog:this.monomerNaturalAnalogInput}}get metaInputs(){return[]}get rgroupInputs(){return[]}getMonomerInfoTable(t){const e=Rn(t.rgroups,t.smiles,t.molfile),n=r.chem.drawMolecule(e,150,150),i=s.tableFromMap({name:t.name,author:t.author,createDate:t.createDate});return s.divH([n,i],{style:{alignItems:"center"}})}async removeMonomers(t,e,n=!0){let i=[];try{const t=await r.dapi.files.readAsText(hn.so+e);i=JSON.parse(t)}catch(t){return r.shell.error(`Error reading library ${e}`),console.error(t)}const o=t.map((t=>$n(i,(e=>e.symbol===t.symbol&&e.polymerType===t.polymerType))));for(let n=0;n<o.length;n++)if(-1===o[n])return void r.shell.error(`Monomer ${t[n].symbol} not found in library ${e}`);const a=o.map((t=>i[t])),l=s.divV(a.map((t=>this.getMonomerInfoTable(t))),{style:{maxHeight:"500px",overflow:"scroll"}}),c=a.length>1,h=c?`Are you sure you want to remove monomers ${a.map((t=>t.symbol)).join(", ")} from ${e} library?`:`Are you sure you want to remove monomer with symbol ${a[0].symbol} from ${e} library?`,u=s.dialog("Remove Monomer"+(c?"s":"")).add(s.h1(h)).add(l).addButton("Remove",(async()=>{i=i.filter((t=>!a.includes(t))),await r.dapi.files.writeAsText(hn.so+e,JSON.stringify(i,null,2)),await(await pn.getInstance()).loadLibraries(!0),await this.refreshTable(),n&&r.shell.info(`Monomer${c?"s":""} ${a.map((t=>t.symbol)).join(", ")} ${c?"were":"was"} successfully removed from ${e} library`),u.close()})).show()}async addMonomerToLib(t,e){let n=[];try{const t=await r.dapi.files.readAsText(hn.so+e);n=JSON.parse(t)}catch(t){return r.shell.error(`Error reading library ${e}`),console.error(t)}const i=$n(n,(e=>e.symbol===t.symbol&&e.polymerType===t.polymerType)),o=this.getMonomersDataFrame()?.col(Sn.MONOMER)?.toList()?.findIndex((e=>e===t.smiles)),a=async()=>{try{const i=n.findIndex((e=>e.symbol===t.symbol&&e.polymerType===t.polymerType));i>=0?n[i]={...t,lib:void 0,wem:void 0}:n.push({...t,lib:void 0,wem:void 0}),await r.dapi.files.writeAsText(hn.so+e,JSON.stringify(n,null,2)),await(await pn.getInstance()).loadLibraries(!0),await this.refreshTable(t.symbol),this._molChanged=!1,r.shell.info(`Monomer ${t.symbol} was successfully saved in library ${e}`)}catch(t){r.shell.error("Error saving monomer"),console.error(t)}this.onMonomerInputChanged()};let l=null,c="";if(i>=0)l=this.getMonomerInfoTable(n[i]),c=`Monomer with symbol '${t.symbol}' already exists in library ${e}.\nAre you sure you want to overwrite it?`;else if((o??-1)>=0){const t=await Hn(this.getMonomersDataFrame().rows.get(o));l=this.getMonomerInfoTable(t),c=`Monomer with the same structure already exists in library ${e} with different symbol (${t.symbol}).\nAre you sure you want to duplicate it?`}if(l){const t=s.dialog("Save Monomer").add(s.divText(c)).add(l).addButton("Save",(()=>{t.close(),a()})).show()}else await a()}async saveMonomer(){let t=this.molSketcher.getSmiles();if(!t||!r.chem.checkSmiles(t))return void r.shell.warning("Invalid SMILES");t=Rn([],t);let e=r.chem.convert(t,a.chem.Notation.Smiles,a.chem.Notation.MolBlock);e=kn(e);const n={};this.metaGrid.items.filter((t=>!!t.Property&&!!t.Value)).forEach((t=>{n[t.Property]=t.Value}));const i=this.metaGrid.addingItem;i&&i.Property&&i.Value&&(n[i.Property]=i.Value),"#000000"===this.colorsEditor.colors.line&&"#000000"===this.colorsEditor.colors.background&&"#000000"===this.colorsEditor.colors.text||(n.colors={default:this.colorsEditor.colors});const o={symbol:this.monomerSymbolInput.value,name:this.monomerNameInput.value,molfile:e,smiles:t,polymerType:this.polymerTypeInput.value,monomerType:this.monomerTypeInput.value,naturalAnalog:this.monomerNaturalAnalogInput.value?this.monomerNaturalAnalogInput.value:void 0,id:this.monomerIdInput.value??0,rgroups:this.rgroupsGrid.items,author:a.User.current().friendlyName,createDate:(new Date).toISOString(),meta:n},s=this.getMonomerLib()?.source;s?await this.addMonomerToLib(o,s):r.shell.warning("Monomer library source is not specified")}}function $n(t,e){let n=-1;for(let i=t.length-1;i>=0;i--)if(e(t[i])){n=i;break}return n}function Rn(t,e,n){const i=!e||!r.chem.checkSmiles(e);if(i&&!n)throw new Error("Both SMILES and MOL block are empty or malformed");let o=i?r.chem.convert(n,a.chem.Notation.Unknown,a.chem.Notation.Smiles):e;return o=function(t,e){let n=t;return e.forEach((t=>{const e=t.label[1]??"1",i=new RegExp(`\\[\\${t.capGroupName}:${e}\\]`,"g");n=n.replace(i,`[*:${e}]`)})),n=n.replaceAll(/\[\d[A-Z]{1,2}\]/g,(t=>`[*:${t[1]}]`)),n}(o,t),o=Mn(o),i?o:r.chem.convert(o,a.chem.Notation.Unknown,a.chem.Notation.Smiles)}function kn(t){const e=t.split("\n"),n=e.findIndex((t=>t.startsWith("M")&&t.includes("ISO")));if(-1!==n){const t=e[n].indexOf("ISO");e[n]=e[n].substring(0,t)+"RGP"+e[n].substring(t+3)}const i=e.findIndex((t=>t.includes("V2000")));if(-1===i)return console.error("Mol start line not found"),t;const o=Number.parseInt(e[i].trim().split(" ")[0].slice(0,3).trim()),r={};for(let t=i+1;t<i+1+o;t++){const n=e[t].indexOf("R ");if(-1===n)continue;"#"!==e[t][n+1]&&(e[t]=e[t].replace("R ","R#"));const o=e[t].trim().split(" ").map((t=>t.trim())).filter(Boolean);if(r[t-i]=1,o.length<14)continue;const s=Number.parseInt(o[13]);Number.isNaN(s)||(r[t-i]=s)}const s=Object.keys(r);if(-1===e.findIndex((t=>t.startsWith("M")&&t.includes("RGP")))){const t=`M RGP${s.length.toString().padStart(3," ")}${Object.entries(r).map((([t,e])=>`${t.toString().padStart(4," ")}${e.toString().padStart(4," ")}`)).join("")}`,n=e.findIndex((t=>t.startsWith("M")&&t.includes("END")));e.splice(n,0,t)}return s.filter((t=>!!Number.parseInt(t))).map((t=>Number.parseInt(t)+i)).forEach((t=>{const n=e[t].split(" "),i=n.findIndex((t=>"R#"===t));if(-1!==i){for(let t=i+1;t<n.length;t++)n[t]&&1==n[t].length&&(Number.parseInt(n[t])??0)>0&&(n[t]="0");e[t]=n.join(" ")}})),e.join("\n")}function On(t,e){let n=t;return e.forEach((t=>{const e=t.label[1]??"1",i=Ln(t,"capGroupName");n=n.replace(`[*:${e}]`,`[${i}]`)})),n}async function Hn(t){let e;try{e=JSON.parse(t.get(Sn.META)??"{}");for(const t in e)"object"==typeof e[t]&&(e[t]=JSON.stringify(e[t])),("string"!=typeof e[t]||e[t]!==a.INT_NULL.toString()&&e[t]!==a.FLOAT_NULL.toString())&&("number"!=typeof e[t]||e[t]!==a.INT_NULL&&e[t]!==a.FLOAT_NULL)||(e[t]=null)}catch(t){console.error(t)}const n=t.get(Sn.MONOMER);if(!n)throw new Error("Monomer SMILES is empty");let i="";try{i=r.chem.convert(n,a.chem.Notation.Smiles,a.chem.Notation.MolBlock),i=kn(i)}catch(t){r.shell.error(`Error converting SMILES to molfile, \n ${n}`),console.error(t)}let o=t.get(Sn.NATURAL_ANALOG);const s=t.get(Sn.POLYMER_TYPE);let l=[];try{if(l=JSON.parse(t.get(Sn.R_GROUPS)??"[]"),!o&&s){const t=await An(On(n,l),s);t&&(o=t)}}catch(t){l??=[]}return{symbol:t.get(Sn.SYMBOL),name:t.get(Sn.NAME),molfile:i,smiles:n,polymerType:s,monomerType:t.get(Sn.MONOMER_TYPE),naturalAnalog:o,id:t.get(Sn.ID),rgroups:l,meta:e,author:t.get(Sn.AUTHOR),createDate:t.get(Sn.CREATE_DATE)}}class Gn{_colors;_colorInputs;constructor(t){this._colors=t,this._colorInputs={line:s.input.color("Line",{value:t.line,onValueChanged:t=>this._colors.line=t}),background:s.input.color("Background",{value:t.background,onValueChanged:t=>this._colors.background=t}),text:s.input.color("Text",{value:t.text,onValueChanged:t=>this._colors.text=t})}}get colors(){return this._colors}set colors(t){const e={line:a.Color.toHtml(a.Color.fromHtml(t.line??"#000000")),background:a.Color.toHtml(a.Color.fromHtml(t.background??"#000000")),text:a.Color.toHtml(a.Color.fromHtml(t.text??"#000000"))};this._colors=e;for(const t in this._colorInputs)this._colorInputs[t].value=e[t]}get colorsMetaFormat(){return{colors:{default:this._colors}}}get form(){return s.form(Object.values(this._colorInputs))}}class Fn{monomer;root=s.divV([],{classes:"monomer-card-root"});_selected=!1;get selected(){return this._selected}set selected(t){this._selected=t,this.root.style.border=t?"2px solid var(--green-2)":"2px solid var(--grey-2)"}constructor(t){this.monomer=t}render(){s.empty(this.root);const t=this.monomer.smiles&&r.chem.checkSmiles(this.monomer.smiles)?r.chem.drawMolecule(this.monomer.smiles,200,200):r.chem.drawMolecule(this.monomer.molfile??"",200,200);this.root.appendChild(t);const e=s.divH([s.divText("Monomer Name: "),s.divText(this.monomer.name)],{classes:"monomer-card-info-row"});if(this.root.appendChild(e),s.tooltip.bind(e,this.monomer.name),this.monomer.lib?.source){const t=s.divH([s.divText("Source: "),s.divText(this.monomer.lib.source)],{classes:"monomer-card-info-row"});this.root.appendChild(t),s.tooltip.bind(t,this.monomer.lib.source)}const n=s.divH([s.divText("Polymer Type: "),s.divText(this.monomer.polymerType)],{classes:"monomer-card-info-row"});this.root.appendChild(n),s.tooltip.bind(n,this.monomer.polymerType),s.tooltip.bind(this.root,"Select Monomer")}}class Dn{monomerSymbol;monomers;root=s.divH([],{style:{alignItems:"center",width:"100%",overflow:"hidden",visibility:"visible"},classes:"duplicate-monomer-symbol-row"});monomerCards;constructor(t,e,n,i){this.monomerSymbol=t,this.monomers=e,this.monomerCards=e.map((t=>new Fn(t)));const o=s.divH([],{style:{overflowX:"auto",width:"100%"}}),r=s.h1(t,{style:{lineHeight:"2em",fontSize:"1.5em",marginRight:"20px",width:"100px",overflow:"hidden",textOverflow:"elipsis"}});s.tooltip.bind(r,t),this.root.appendChild(r),this.root.appendChild(o),this.monomerCards.forEach((t=>{t.root.onclick=()=>{this.monomerCards.forEach((t=>t.selected=!1)),t.selected=!0,i(t.monomer)},n&&t.monomer===n&&(t.selected=!0),o.appendChild(t.root)}))}render(){this.monomerCards.forEach((t=>t.render()))}}class Bn{monomerCardRows=[];saveSettingsPromise=Promise.resolve();searchInput;_root;monomers;settings;filteredMonomerRows=[];static _instance;vv;static async getInstance(){return Bn._instance||(Bn._instance=new Bn,await Bn._instance.refresh(),(await pn.getInstance()).getMonomerLib().onChanged.subscribe((async()=>await Bn._instance.refresh()))),Bn._instance.refresh(),Bn._instance}async refresh(){this.settings=await(0,Nt.ub)();const t=await pn.getInstance();await t.awaitLoaded(),await t.loadLibrariesPromise,this.monomers=t.duplicateMonomers,this.monomerCardRows=[];for(const e in this.monomers)for(const n in this.monomers[e]){const i=this.settings.duplicateMonomerPreferences?.[e]?.[n]??null,o=i?this.monomers[e][n].find((t=>t.lib?.source===i))??null:null;this.monomerCardRows.push(new Dn(n,this.monomers[e][n],o,(async i=>{this.saveSettingsPromise=this.saveSettingsPromise.then((async()=>{i.lib?.source&&(this.settings.duplicateMonomerPreferences=this.settings.duplicateMonomerPreferences??{},this.settings.duplicateMonomerPreferences[e]=this.settings.duplicateMonomerPreferences[e]??{},this.settings.duplicateMonomerPreferences[e][n]=i.lib.source,await(0,Nt.Eu)(this.settings),r.shell.info(`Monomer '${i.name}' from source '${i.lib.source}' selected for symbol '${n}'.`),t.assignDuplicatePreferances(this.settings))}))})))}if(this.filteredMonomerRows=this.monomerCardRows,this.vv)this.vv.setData(this.filteredMonomerRows.length,(t=>(this.filteredMonomerRows[t].render(),this.filteredMonomerRows[t].root)));else{this.vv=s.virtualView(this.monomerCardRows.length,(t=>(this.monomerCardRows[t].render(),this.monomerCardRows[t].root))),this.vv.root.classList.add("duplicate-monomers-virtual-view"),this.searchInput=s.input.string("Search",{placeholder:"Monomer Symbol",value:"",onValueChanged:()=>t(this.searchInput.value)}),this.searchInput.root.style.justifyContent="center",this.searchInput.input.style.width="200px",this._root=s.divV([s.h1("Manage Duplicate Monomer Symbols",{style:{textAlign:"center"}}),this.searchInput.root,s.divV([this.vv.root],{style:{overflowY:"auto",height:"100%"}})],{style:{height:"100%"}});const t=t=>{this.filteredMonomerRows=this.monomerCardRows.filter((e=>e.monomerSymbol.toLowerCase().includes(t.toLowerCase()))),this.vv.setData(this.filteredMonomerRows.length,(t=>(this.filteredMonomerRows[t].render(),this.filteredMonomerRows[t].root)))}}}constructor(){}get root(){return this._root}}async function Vn(){await qn.showDialog()}async function Wn(t=!0){return await zn.showView(t)}class Un{_fileManager;_widget;get widget(){return this._widget}constructor(){}static instancePromise;static async getInstance(){return void 0===Un.instancePromise&&(Un.instancePromise=(async()=>{const t=new Un,e=await(0,bt.pj)();return t._fileManager=await e.getFileManager(),t._widget=await t.createWidget(),t})()),Un.instancePromise}static async reloadWidget(){const t=await Un.getInstance();t._widget=await t.createWidget()}async createWidget(){const t=await this.getWidgetContent();return(await(0,bt.pj)()).eventManager.addLibraryFileRequested$.subscribe((()=>this.promptToAddLibraryFiles())),new a.Widget(t)}async getWidgetContent(){const t=await jn.createControlsForm();return fn()(t).addClass("monomer-lib-controls-form"),setTimeout((()=>{t&&fn()(t)&&fn()(t).removeClass("ui-form-condensed")}),200),s.divV([t])}async promptToAddLibraryFiles(){a.Utils.openFile({accept:".json",open:async t=>{const e=await t.text(),n=t.name,i=a.TaskBarProgressIndicator.create(`Adding ${n} as a monomer library`);try{await this._fileManager.addLibraryFile(e,n)}catch(t){r.shell.error(`File ${n} is not a valid monomer library, verify it is aligned to HELM JSON schema.`)}finally{i.close()}}})}}class jn{fileManager;userLibSettings;constructor(t,e){this.fileManager=t,this.userLibSettings=e,this.fileManager.eventManager.updateUIControlsRequested$.subscribe((()=>{this.updateControlsForm()})),this.fileManager.eventManager.librarySelectionRequested$.subscribe((([t,e])=>{this.updateLibrarySelectionStatus(e,t)}))}toLog(){return"LibraryControlsManager<#>"}static async createControlsForm(){eo.logger.debug("LibraryControlsForm.createControlsForm(), start");const[t,e]=await Promise.all([(0,bt.pj)().then((t=>t.getFileManager())),await(0,Nt.ub)()]);return new jn(t,e)._createControlsForm()}_createControlsForm(){const t=this.createLibraryControls(),e=s.wideForm(t,void 0);return fn()(e).addClass("monomer-lib-controls-form"),e}updateControlsForm(){const t=this._createControlsForm();fn()(".monomer-lib-controls-form").replaceWith(t)}createLibraryControls(){return this.fileManager.getValidLibraryPaths().map((t=>this.createLibInput(t)))}createLibInput(t){const e=`${this.toLog()}.createLibInput()`;eo.logger.debug(`${e}, libFileName = '${t}', start`);const n=!this.userLibSettings.exclude.includes(t),i=s.input.bool(t,{value:n,onValueChanged:()=>{this.fileManager.eventManager.updateLibrarySelectionStatus(t,i.value)}});s.tooltip.bind(i.root,`Include monomers from ${t}`);const o=s.iconFA("trash-alt",(()=>this.promptForLibraryDeletion(t))),a=s.icons.edit((async()=>{r.shell.v=await(await _n.getInstance()).getViewRoot(t)}),"Edit monomer library");return s.tooltip.bind(o,`Delete ${t}`),i.addOptions(a),i.addOptions(o),eo.logger.debug(`${e}, libFileName = '${t}', end`),i}async updateLibrarySelectionStatus(t,e){this.updateLibrarySettings(t,e),await(0,Nt.Eu)(this.userLibSettings);const n=await(0,bt.pj)();await n.loadMonomerLib(!0),r.shell.info("Monomer library user settings saved")}updateLibrarySettings(t,e){t?this.userLibSettings.exclude=this.userLibSettings.exclude.filter((t=>t!==e)):this.userLibSettings.exclude.includes(e)||this.userLibSettings.exclude.push(e)}promptForLibraryDeletion(t){s.dialog("Warning").add(s.divText(`Delete file ${t}?`)).onOK((async()=>{try{const e=a.TaskBarProgressIndicator.create(`Deleting ${t} library`);await this.updateLibrarySelectionStatus(!1,t),await this.fileManager.deleteLibraryFile(t),e.close()}catch(e){console.error(e),r.shell.error(`Failed to delete ${t} library`)}})).showModal(!1)}}class qn{constructor(){}static _instance;dialog;closeDialogSubject$=new h.Subject;static async showDialog(){qn._instance||(qn._instance=new qn,qn._instance.closeDialogSubject$.subscribe((()=>{qn._instance.dialog=void 0}))),qn._instance.dialog||(qn._instance.dialog=await qn._instance.getDialog()),qn._instance.dialog.show()}async getDialog(){const t=dn.getInstance(),e=(await Un.getInstance()).widget,n=s.dialog({title:"Manage monomer libraries",helpUrl:"/help/datagrok/solutions/domains/bio/bio.md#manage-monomer-libraries"});fn()(n.root).css("width","350px"),n.clear(),n.addButton("Add",(()=>t.addLibraryFile()),void 0,"Upload new HELM monomer library"),n.add(e);const i=n.onClose.subscribe((()=>{this.closeDialogSubject$.next(),i.unsubscribe()}));return n}}class zn{constructor(){}static _instance;static viewName="Manage Monomer Libraries";_view;_duplicateManager;libManager;async getView(t=!0){const e=dn.getInstance(),n=(await Un.getInstance()).widget,i=s.bigButton("Add",(()=>e.addLibraryFile()),"Upload new HELM monomer library"),o=s.bigButton("Merge",(()=>{this.mergeSelectedLibs()}),"Merge selected libraries into one"),l=s.splitH([s.divV([n.root,s.buttonsInput([i,o])],{classes:"ui-form"}),this._duplicateManager.root],{style:{width:"100%",height:"100%"}},!0);return this._view=a.View.fromRoot(l),this._view.name=zn.viewName,t&&r.shell.addView(this._view),s.tools.waitForElementInDom(l).then((()=>{setTimeout((()=>{const t=Array.from(l.children).filter((t=>t.classList.contains("ui-box")));if(2!==t.length)return;const[e,n]=t,i=e.getBoundingClientRect().width+n.getBoundingClientRect().width,o=.3*i;e.style.width=`${o}px`;const r=i-o;n.style.width=`${r}px`}),100),this._view.subs.push(r.events.onCurrentViewChanged.subscribe((()=>{try{const t=zn._instance;t&&t._view&&"id"in r.shell.v&&r.shell.v.id===t._view.id&&t._duplicateManager?.refresh()}catch(t){console.error(t)}})))})),this._view}static async showView(t=!0){return zn._instance||(zn._instance=new zn),zn._instance._duplicateManager||(zn._instance._duplicateManager=await Bn.getInstance()),zn._instance.libManager||(zn._instance.libManager=await pn.getInstance()),t&&zn._instance._view&&Array.from(r.shell.views).find((t=>t.id&&t.id===zn._instance._view.id))?(r.shell.v=zn._instance._view,await zn._instance._duplicateManager.refresh(),zn._instance._view):(zn.closeExistingViews(),zn._instance.getView(t))}static closeExistingViews(){Array.from(r.shell.views).filter((t=>t.name===zn.viewName)).forEach((t=>t.close()))}async mergeSelectedLibs(){const t="Library with this name already exists",e=await pn.getInstance();if(await e.awaitLoaded(),await e.loadLibrariesPromise,!e.duplicatesHandled)return void r.shell.warning("Selected libraries contain repeating symbols with different monomers.\n Please choose the correct monomer for each symbol using duplicate monomomer manager.");const n=e.getBioLib().toJSON(),i=s.dialog("Merge selected libraries"),o=s.input.string("Library Name",{placeholder:"Enter new library name",nullable:!1,onValueChanged:()=>{const e=h(o.value);i.getButton("Download")?.classList?.toggle("d4-disabled",!!e&&e!==t),i.getButton("Save")?.classList?.toggle("d4-disabled",!!e)}}),l=(await this.libManager.getFileManager()).getValidLibraryPaths();function c(){let t=o.value;return t.endsWith(".json")||(t+=".json"),t}function h(e){return e&&e.trim()?e.endsWith(".json")&&l.includes(e)||l.includes(e+".json")?t:null:"Library name cannot be empty"}o.addValidator(h),i.add(o).add(s.divText(`Total monomers: ${n.length}`)).addButton("Download",(()=>{a.Utils.download(c(),JSON.stringify(n))})).addButton("Save",(async()=>{i.close();const t=c(),e=JSON.stringify(n),o=await this.libManager.getFileManager();this._view&&s.setUpdateIndicator(this._view.root,!0);try{await o.addLibraryFile(e,t,!1);const n=await(0,Nt.ub)();n.exclude=l,await(0,Nt.Eu)(n),await this.libManager.loadLibraries(!0),await Un.reloadWidget()}catch(e){r.shell.error(`Failed to save library ${t}. see console for details.`),console.error(e)}finally{this._view&&s.setUpdateIndicator(this._view.root,!1)}})).show(),i.getButton("Download")?.classList?.add("d4-disabled"),i.getButton("Save")?.classList?.add("d4-disabled")}}var Yn,Kn=function(t,e,n,i){return new(n||(n=Promise))((function(o,r){function s(t){try{l(i.next(t))}catch(t){r(t)}}function a(t){try{l(i.throw(t))}catch(t){r(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,a)}l((i=i.apply(t,e||[])).next())}))};class Zn{_setBreadcrumbsInViewName(){var t,e;const n=["Home","Demo",...(null!==(t=this._path)&&void 0!==t?t:"").split("/")],i=s.breadcrumbs(n);if(i.onPathClick.subscribe((t=>Kn(this,void 0,void 0,(function*(){const e=t[t.length-1];if(e===i.path[i.path.length-1])return;const n=r.shell.browsePanel.mainTree.getOrCreateGroup("Apps").getOrCreateGroup("Demo");n.currentItem="Demo"===e?n:n.items.find((t=>t.text===e))})))),r.shell.v){if(0!==i.path.length&&"Home"===i.path[0]){const t=s.iconFA("home",(()=>{r.shell.v.close(),r.shell.v=a.View.createByType(a.VIEW_TYPE.HOME)}));t.classList.add("demo-breadcrumbs-home-element"),i.root.firstElementChild.replaceWith(t)}const t=null===(e=r.shell.v.ribbonMenu.root.parentElement)||void 0===e?void 0:e.getElementsByClassName("d4-ribbon-name")[0];t&&(t.textContent="",t.appendChild(i.root))}}constructor(t,e,n=!1,i){var o,r;this.name="",this.description="",this._isAutomatic=!1,this._autoStartFirstStep=!1,this._currentStep=0,this._isStopped=!1,this._isCancelled=!1,this._isStepProcessed=!1,this._root=s.div([],{id:"demo-script",classes:"tutorials-root tutorials-track demo-app-script"}),this._steps=[],this._mainHeader=s.panel([],"tutorials-main-header"),this._header=s.h2(""),this._headerDiv=s.divH([],"tutorials-root-header"),this._stopStartBtn=s.button(s.iconFA("pause"),(()=>Kn(this,void 0,void 0,(function*(){return yield this._changeStopState()}))),"Play / pause"),this._restartBtn=s.button(s.iconFA("redo"),(()=>Kn(this,void 0,void 0,(function*(){return yield this._restartScript()}))),"Restart"),this._nextStepBtn=s.button(s.iconFA("play"),(()=>Kn(this,void 0,void 0,(function*(){this._isStepProcessed||(yield this._nextStep())}))),"Next step"),this._activity=s.panel([],"tutorials-root-description"),this._progressDiv=s.divV([],"tutorials-root-progress"),this._progress=s.element("progress"),this._progressSteps=s.divText(""),this._closeBtn=s.button(s.iconFA("chevron-left"),(()=>this._closeDock()),"Back to demo"),this.DEMO_PATH="apps/Tutorials/Demo",this.name=t,this.description=e,this._isAutomatic=n,this._autoStartFirstStep=null!==(o=null==i?void 0:i.autoStartFirstStep)&&void 0!==o&&o,this._path=null!==(r=null==i?void 0:i.path)&&void 0!==r?r:"",this._progress.max=0,this._progress.value=1,Zn.currentObject=this}get steps(){return this._steps}get stepNumber(){return this._steps.length}_addHeader(){this._createHeaderDiv(),this._createProgressDiv(),this._mainHeader.append(this._headerDiv,this._progressDiv)}_createHeaderDiv(){this._header.innerText=this.name,this._headerDiv.append(this._closeBtn),this._headerDiv.append(this._header),this._nextStepBtn.firstChild.className="grok-icon fas fa-play",this._headerDiv.append(this._isAutomatic?this._stopStartBtn:this._nextStepBtn)}_createProgressDiv(){this._progress.max=this.stepNumber,this._progressDiv.append(this._progress),this._progressSteps=s.divText(`Step: ${this._progress.value} of ${this.stepNumber}`),this._progressDiv.append(this._progressSteps)}_addDescription(){var t;this._activity.append(s.div(this.description,"tutorials-root-description"));for(let e=0;e<this.stepNumber;e++){let n=s.iconFA("clock");this._isAutomatic||0===e&&(n=s.iconFA("play",(()=>this._nextStep()),"Next step"),n.className="grok-icon fas fa-play");const i=s.div(this._steps[e].name,"grok-tutorial-entry-instruction"),o=s.div(null===(t=this._steps[e].options)||void 0===t?void 0:t.description,"grok-tutorial-step-description hidden"),r=s.divH([n,i],"grok-tutorial-entry");this._activity.append(r,o)}}_initRoot(){r.shell.windows.showContextPanel=!0,r.shell.windows.showHelp=!1,this._node=r.shell.dockManager.dock(this._root,a.DOCK_TYPE.FILL,r.shell.dockManager.findNode(r.shell.browsePanel.root),this.name),this._node.container.containerElement.classList.add("tutorials-demo-script-container"),this._addHeader(),this._root.append(this._mainHeader),this._addDescription(),this._root.append(this._activity)}_setViewParams(){var t;r.shell.v&&(r.shell.v.name=this.name,r.shell.v.path=`${this.DEMO_PATH}/${(null!==(t=this._path)&&void 0!==t?t:"").replaceAll(" ","-")}`,this._setBreadcrumbsInViewName())}_nextStep(){return Kn(this,void 0,void 0,(function*(){var t,e;this._isStepProcessed=!0,this._isAutomatic||(this._nextStepBtn.classList.add("disabled"),this._nextStepBtn.firstChild.classList.add("fa-disabled"));const n=this._activity.getElementsByClassName("grok-tutorial-entry")[this._currentStep],i=this._activity.getElementsByClassName("grok-icon")[this._currentStep],o=this._activity.getElementsByClassName("grok-tutorial-step-description")[this._currentStep];i.className="grok-icon far fa-spinner-third fa-spin",o.classList.remove("hidden"),o.classList.add("visible");const l=n,c=(null===(t=this._steps[this._currentStep].options)||void 0===t?void 0:t.delay)?null===(e=this._steps[this._currentStep].options)||void 0===e?void 0:e.delay:2e3;try{this._setViewParams(),yield this._steps[this._currentStep].func(),this._setViewParams()}catch(t){console.error(t)}this._scrollTo(this._root,l.offsetTop-this._mainHeader.offsetHeight),this._isAutomatic&&(yield this._countdown(n,i,c),yield(0,te.cb)(c));const h=s.iconFA("check");if(i.replaceWith(h),h.className="grok-icon far fa-check",this._progress.value++,this._progressSteps.innerText=`Step: ${this._progress.value} of ${this.stepNumber}`,this._currentStep++,this._isStepProcessed=!1,this._currentStep!==this.stepNumber){if(!this._isAutomatic){const t=this._activity.getElementsByClassName("grok-icon")[this._currentStep],e=s.iconFA("play",(()=>this._nextStep()),"Next step");e.className="grok-icon fas fa-play",t.replaceWith(e),this._nextStepBtn.classList.remove("disabled"),this._nextStepBtn.firstChild.classList.remove("fa-disabled")}r.shell.v instanceof a.TableView&&(yield r.data.detectSemanticTypes(r.shell.tv.dataFrame))}else this._isAutomatic?this._stopStartBtn.replaceWith(this._restartBtn):this._nextStepBtn.replaceWith(this._restartBtn)}))}_startScript(){return Kn(this,void 0,void 0,(function*(){for(let t=this._currentStep;t<this.stepNumber&&!this._isStopped&&!this._isCancelled;t++)yield this._nextStep()}))}_scrollTo(t,e){t.focus(),t.scrollTop=e}_countdown(t,e,n){return Kn(this,void 0,void 0,(function*(){const i=s.div([],"demo-script-countdown");e.classList.add("hidden");let o=n/1e3;const r=this._createSVGIndicator(o);i.append(r),t.prepend(i);const a=setInterval((()=>{o--,0===o&&(clearInterval(a),i.remove(),e.classList.remove("hidden"),e.classList.add("visible"))}),1e3)}))}_createSVGIndicator(t){const e=document.createElementNS("http://www.w3.org/2000/svg","svg"),n=document.createElementNS("http://www.w3.org/2000/svg","circle");return n.setAttributeNS(null,"cx","7"),n.setAttributeNS(null,"cy","7"),n.setAttributeNS(null,"r","6"),n.setAttributeNS(null,"style",`animation: countdown ${t}s linear infinite forwards`),e.append(n),e}_changeStopState(){return Kn(this,void 0,void 0,(function*(){const t=this._stopStartBtn.getElementsByClassName("grok-icon");t[0].className="grok-icon fas fa-play",this._isStopped=!this._isStopped,this._isStopped||(t[0].className="grok-icon fal fa-pause",this._isStepProcessed||(yield this._startScript()))}))}_restartScript(){return Kn(this,void 0,void 0,(function*(){r.shell.dockManager.close(this._node),this._clearRoot(),this._setInitParams(),yield this.start()}))}_clearRoot(){this._root=s.div([],{id:"demo-script",classes:"tutorials-root tutorials-track demo-app-script"}),this._mainHeader=s.panel([],"tutorials-main-header"),this._header=s.h2(""),this._headerDiv=s.divH([],"tutorials-root-header"),this._activity=s.panel([],"tutorials-root-description"),this._progressDiv=s.divV([],"tutorials-root-progress"),this._progress=s.element("progress"),this._progressSteps=s.divText(""),this._progress.max=0,this._progress.value=1}_setInitParams(){this._currentStep=0,this._isStopped=!1,this._isCancelled=!1,this._stopStartBtn.getElementsByClassName("grok-icon")[0].className="grok-icon fal fa-pause",this._nextStepBtn.classList.remove("disabled")}_closeDock(){r.shell.dockManager.close(this._node),this.cancelScript()}cancelScript(){this._isCancelled=!0,Zn.currentObject=null}step(t,e,n){return this._steps[this.steps.length]={name:t,func:e,options:n},this}start(){return Kn(this,void 0,void 0,(function*(){this._initRoot(),r.shell.v.name===this.name&&(r.shell.v.close(),this._node=r.shell.dockManager.dock(this._root,a.DOCK_TYPE.FILL,r.shell.dockManager.findNode(r.shell.browsePanel.root),this.name)),this._isAutomatic?yield this._startScript():this._autoStartFirstStep&&(yield this._nextStep())}))}}Zn.currentObject=null,function(t){t.X="Embed_X",t.Y="Embed_Y"}(Yn||(Yn={}));var Xn=n(966),Jn=n(608),Qn=n(1619);class ti{urlParams;funcName;options;df;view;constructor(t,e,n={}){this.urlParams=t,this.funcName=e,this.options=n}async init(t){this.df=t,await this.buildView()}async buildView(){const t=ot()(this.urlParams.entries()).map((([t,e])=>`${t}=${encodeURIComponent(e)}`)).toArray().join("&");this.view=r.shell.addTableView(this.df),this.view.path=this.view.basePath=`func/${eo.name}.${this.funcName}?${t}`;const e={...this.options,sequenceColumnName:"sequence"};for(const[t,n]of this.urlParams.entries())switch(t){case oe.n5.fixWidth:case oe.n5.fitArea:e[t]=["1","on","true"].includes(n.toLowerCase());break;default:e[t]=n}const n=await this.view.dataFrame.plot.fromType("WebLogo",e);this.view.dockManager.dock(n,a.DOCK_TYPE.DOWN,null,"WebLogo",.35)}}class ei{tableInput;seqColInput;funcParamsDiv;get funcParams(){return{table:this.tableInput.value,sequence:this.seqColInput.value}}get paramsUI(){return this.funcParamsDiv}constructor(){this.tableInput=s.input.table("Table",{value:r.shell.tv.dataFrame,onValueChanged:()=>{this.onTableInputChanged()}});const t=this.tableInput.value.columns.bySemType(a.SEMTYPE.MACROMOLECULE);this.seqColInput=s.input.column("Sequence",{table:this.tableInput.value,value:t,filter:t=>t.semType===a.SEMTYPE.MACROMOLECULE}),this.funcParamsDiv=s.inputs([this.tableInput,this.seqColInput],{style:{minWidth:"320px"}})}onTableInputChanged(){this.seqColInput=s.input.column("Sequence",{table:this.tableInput.value,value:this.tableInput.value.columns.bySemType(a.SEMTYPE.MACROMOLECULE)})}}var ni=n(6869);new class{tooltipHandlerTemp="tooltip-handler.Monomer"};class ii extends Vt{constructor(t,e){super(t,e)}render(t,e,n,i,o,r,s){t.save();try{if(!r.isTableCell)return;const s=r.cell?.column&&r.cell.column?.dart&&"true"===r.cell.column.getTag(Rt.Mn.applyToBackground);t.font="12px monospace",t.textBaseline="middle",t.textAlign="center";const a=r.cell.value;if(!a||a==wt._S)return;let l=kt.S$,c="rgb(255, 255, 255)";if(this.monomerLib){const t=this.tableCol.getTag(wt.gp.alphabet),e=t===gt.YI.RNA||t===gt.YI.DNA?ni.o.NUCLEOTIDE:ni.o.AA;if(s){const t=this.monomerLib.getMonomerColors(e,a);l=t?.textcolor??l,c=t?.backgroundcolor??c}else l=this.monomerLib.getMonomerTextColor(e,a)}const h=Math.max(2,Math.floor(.15*i));s&&(t.fillStyle=c,t.fillRect(e,n,i,o)),t.fillStyle=l,t.fillText((0,gt.zS)(a,h),e+i/2,n+o/2,i)}finally{t.restore()}}onMouseMove(t,e){if(t.grid.dart!=this.gridCol?.grid.dart||t.gridColumn.dart!=this.gridCol?.dart||!t.tableColumn||!t.isTableCell)return!1;const n=t.tableColumn.getTag(wt.gp.alphabet),i=t.cell.value,o=t.grid.canvas.getBoundingClientRect(),r=t.bounds.right+o.left-4,a=t.bounds.bottom+o.top-4;if(i==wt._S)return s.tooltip.show(s.divText("gap"),r,a),!0;if(!this.monomerLib)return s.tooltip.show(s.divText("Monomer library is not available."),r,a),!0;const l=n===gt.YI.RNA||n===gt.YI.DNA?ni.o.NUCLEOTIDE:ni.o.AA,c=this.monomerLib.getTooltip(l,i);return s.tooltip.show(c,r,a),!0}async awaitRendered(t=1e4,e=`${t} timeout`){return Promise.resolve()}static getOrCreate(t){const[e,n,i]=(0,Gt.BG)(t);let o=i.rendererBack;return o||(o=i.rendererBack=new ii(e,n)),o}}class oi extends a.GridCellRenderer{get name(){return Wt.uF.MONOMER}get cellType(){return Wt.uF.MONOMER}get defaultHeight(){return 15}get defaultWidth(){return 40}render(t,e,n,i,o,r,s){ii.getOrCreate(r).render(t,e,n,i,o,r,s)}onMouseMove(t,e){ii.getOrCreate(t).onMouseMove(t,e)}}class ri{constructor(t,e,n=""){this.target=t,this.debugEnabled=e,this.prefix=n}error(t,e,n){return this.target.error(this.prefix+t,e,n)}warning(t,e){return this.target.warning(this.prefix+t,e)}info(t,e){return this.target.info(this.prefix+t,e)}debug(t,e){if(this.debugEnabled)return this.target.debug(this.prefix+t,e)}}class si extends Map{_onPropertyChanged=new h.Subject;get onPropertyChanged(){return this._onPropertyChanged}get fontSize(){const t=super.get("FontSize");return t&&!isNaN(t)?Number.parseInt(t):12}set fontSize(t){super.set("FontSize",t),this._onPropertyChanged.next("FontSize")}get maxMonomerLength(){const t=super.get("MaxMonomerLength");return"long"===t?null:parseInt(t)}set maxMonomerLength(t){const e=null===t?"long":t.toString();super.set("MaxMonomerLength",e),this._onPropertyChanged.next("MaxMonomerLength")}get tooltipWebLogo(){return super.get("TooltipWebLogo")}set tooltipWebLogo(t){super.set("TooltipWebLogo",t),this._onPropertyChanged.next("TooltipWebLogo")}get defaultSeparator(){return super.get("DefaultSeparator")}set defaultSeparator(t){if(1!==t.length)throw new Error("The separator must be of length one.");super.set("DefaultSeparator",t),this._onPropertyChanged.next("DefaultSeparator")}constructor(t){super(Object.entries(t))}}class ai extends a.Package{_properties;_seqHelper;get seqHelper(){if(!this._seqHelper)throw new Error("Package Bio .seqHelper is not initialized.");return this._seqHelper}_monomerLib;get monomerLib(){if(!this._monomerLib)throw new Error("Package Bio .monomerLib is not initialized.");return this._monomerLib}_monomerSets;get monomerSets(){if(!this._monomerSets)throw new Error("Package Bio .monomerSets is not initialized.");return this._monomerSets}_rdKitModule;get rdKitModule(){if(!this._rdKitModule)throw new Error("Package Bio .rdKitModule is not initialized.");return this._rdKitModule}get properties(){return this._properties}set properties(t){this._properties=t}_initialized=!1;get initialized(){return this._initialized}constructor(t={debug:!1}){super(),super._logger=new ri(super.logger,t.debug)}completeInit(t,e,n,i){this._seqHelper=t,this._monomerLib=e,this._monomerSets=n,this._rdKitModule=i,this._initialized=!0}handleErrorUI(t){const[e,n]=(0,Ct.AP)(t);r.shell.error(e),this.logger.error(e,void 0,n)}}var li=n(5999),ci={};ci.styleTagTransform=A(),ci.setAttributes=b(),ci.insert=g().bind(null,"head"),ci.domAPI=m(),ci.insertStyleElement=w(),d()(li.A,ci),li.A&&li.A.locals&&li.A.locals;var hi=n(6307);class ui extends a.Widget{seqCol;seqHelper;viewed=!1;wlViewer=null;constructor(t,e){super(s.divV([])),this.seqCol=t,this.seqHelper=e}async init(){const t=this.seqHelper.getSeqHandler(this.seqCol),e=eo.properties.tooltipWebLogo,n=this.seqCol.getTag(ee.gp.tooltipWebLogo);!1===e||["false","off","disable","disabled"].includes(n)||(this.wlViewer=await this.seqCol.dataFrame.plot.fromType("WebLogo",{sequenceColumnName:this.seqCol.name,backgroundColor:0,positionHeight:"Entropy",positionWidth:t.getAlphabetIsMultichar()?24:16,fixWidth:!0,fitArea:!1,positionNames:"",endPositionName:"50"}),this.wlViewer.root.style.height="50px",this.root.appendChild(this.wlViewer.root),this.root.style.width="100%")}detach(){this.wlViewer&&(this.wlViewer.detach(),this.wlViewer=null),super.detach()}}function di(t,e,n,i){const o=eo.seqHelper.getSeqHandler(t);let r=null,s=null;for(let t=0;t<o.posList.length;++t)o.posList[t]==e&&(r=t),o.posList[t]==n&&(s=t);if(null===r&&null!==e)throw new Error(`Start position ${e} not found.`);if(null===s&&null!==n)throw new Error(`End position ${n} not found.`);if(o.posList.length<s)throw new Error(`End position ${s} exceeds positions length`);const a=i||`${t.name}: (${e??""}-${n??""})`;return o.getRegion(r,s,a)}const pi={df:a.DataFrame.fromCsv("seq,value\nATCCGTCGT,0.5\nTGTTCGTCA,0.4\nATGGTCGTA,0.7\nATCCGTGCA,0.1"),colName:"seq",positionNames:["1","1A","1C","2","4","4A","4B","5","6"].join(gt.z1),regions:[{name:"first region",start:"1",end:"2"},{name:"second region",start:"1C",end:"4"},{name:"overlapping second",start:"1C",end:"4A"},{name:"whole sequence",start:"1",end:"6"},{name:"bad start",start:"0",end:"6"},{name:"bad end",start:"1",end:"4C"},{name:"bad start & end",start:"0",end:"4C"}]};class mi{urlParams;funcName;view;data;constructor(t,e){this.urlParams=t,this.funcName=e}async init(t){this.data=t??pi;const e=this.data.df.getCol(this.data.colName);this.data.positionNames&&e.setTag(gt.gp.positionNames,this.data.positionNames),this.data.regions&&e.setTag(gt.gp.regions,JSON.stringify(this.data.regions)),await this.buildView()}async buildView(){await r.data.detectSemanticTypes(this.data.df),this.view=r.shell.addTableView(this.data.df),this.view.path=this.view.basePath=`func/${eo.name}.${this.funcName}`;const t=await this.view.dataFrame.plot.fromType("WebLogo",{sequenceColumnName:this.data.colName});this.view.dockManager.dock(t,a.DOCK_TYPE.DOWN,null,"WebLogo",.35)}}class fi{call;seqHelper;inputs=new class{table;sequence;region;start;end;name};constructor(t,e){this.call=t,this.seqHelper=e;const n=t=>this.call.inputParams[t].property.description;this.inputs.table=s.input.table("Table",{value:this.call.inputParams.table.value??r.shell.tv.dataFrame});const i=this.call.inputParams.sequence.value??this.inputs.table.value.columns.bySemType(a.SEMTYPE.MACROMOLECULE);this.inputs.sequence=s.input.column("Sequence",{table:r.shell.tv.dataFrame,value:i,onValueChanged:this.sequenceInputChanged.bind(this),filter:t=>t.semType===a.SEMTYPE.MACROMOLECULE}),this.inputs.start=s.input.choice("Start",{onValueChanged:this.startInputChanged.bind(this)}),this.inputs.end=s.input.choice("End",{onValueChanged:this.endInputChanged.bind(this)}),this.inputs.region=s.input.choice("Region",{value:null,items:[],onValueChanged:this.regionInputChanged.bind(this)}),this.inputs.name=s.input.string("Column name",{value:this.getDefaultName(),onValueChanged:this.nameInputChanged.bind(this),clearIcon:!0}),this.inputs.name.onInput.subscribe((()=>this.nameInputInput.bind(this)));for(const t in this.call.inputParams)s.tooltip.bind(this.inputs[t].captionLabel,n(t));this.sequenceInputChanged()}sequenceInputChanged(){const t=this.inputs.sequence.value;t&&this.seqHelper.getSeqHandler(t),this.updateRegionItems(),this.updateStartEndInputItems(),this.updateRegion(!0),this.updateNameInput()}fixRegion=!1;regionInputChanged(){this.fixRegion=!0;try{const t=this.inputs.region.stringValue,e=t?JSON.parse(t):null;if(null!==e)this.inputs.start.value=e?.start,this.inputs.end.value=e?.end;else{const t=this.seqHelper.getSeqHandler(this.inputs.sequence.value);this.inputs.start.value=t.posList[0],this.inputs.end.value=t.posList[t.posList.length-1]}}finally{this.fixRegion=!1}}startInputChanged(){this.updateRegion(!1),this.updateNameInput()}endInputChanged(){this.updateRegion(!1),this.updateNameInput()}nameInputChanged(){this.defaultNameUpdating||(this.defaultName=!1)}nameInputInput(){this.inputs.name.value||(this.defaultName=!0,this.inputs.name.input.focus())}updateStartEndInputItems(){const t=this.inputs.sequence.value,e=t?this.seqHelper.getSeqHandler(t):null,n=this.inputs.start.input,i=this.inputs.end.input;for(let t=n.options.length-1;t>=0;--t)n.options.remove(t);for(let t=i.options.length-1;t>=0;--t)i.options.remove(t);for(const t of e?.posList??[]){const e=document.createElement("option"),o=document.createElement("option");e.text=o.text=t,e.value=o.value=t,n.options.add(e),i.options.add(o)}n.value=e?.posList[0]??"",i.value=e?.posList[e?.posList.length-1]??""}updateRegionItems(){const t=this.inputs.sequence.value,e=t?t.getTag(gt.gp.regions):null,n=e?JSON.parse(e):null,i=this.inputs.region.input;for(let t=i.options.length-1;t>=0;--t)i.options.remove(t);const o=document.createElement("option");if(o.text="",o.value=JSON.stringify(null),i.options.add(o),null!=n){this.inputs.region.root.style.removeProperty("display");for(const t of n){const e=document.createElement("option");e.text=`${t.name}: ${t.start}-${t.end}`,e.value=JSON.stringify(t),i.options.add(e)}}else this.inputs.region.root.style.display="none"}updateRegion(t){const e=this.inputs.start.stringValue??"",n=this.inputs.end.stringValue??"";if(!this.fixRegion){const t=this.inputs.region.input;t.selectedIndex=-1;for(let i=t.options.length-1;i>=0;--i){const o=t.options[i],r=JSON.parse(o.value);r&&e===r.start&&n===r.end&&(t.selectedIndex=i)}}}defaultName=!0;defaultNameUpdating=!1;updateNameInput(){this.defaultNameUpdating=!0;try{this.defaultName&&(this.inputs.name.value=this.getDefaultName())}finally{this.defaultNameUpdating=!1}}getDefaultName(){const t=this.inputs.region.stringValue,e=t?JSON.parse(t):null,n=this.inputs.sequence.value,i=this.inputs.start.stringValue??"",o=this.inputs.end.stringValue??"";return null!=e?`${n.name}(${e.name}): ${e.start}-${e.end}`:`${n?.name}: (${i}-${o})`}getParams(){return{table:this.inputs.table.value,sequence:this.inputs.sequence.value,start:this.getStart(),end:this.getEnd(),name:this.getName()}}getStart(){return this.inputs.start.stringValue}getEnd(){return this.inputs.end.stringValue}getName(){const t=this.inputs.name.stringValue;return""==t?null:t}dialog(){const t=s.inputs(Object.values(this.inputs),{style:{minWidth:"320px"}});s.dialog({title:"Get Region"}).add(t).onOK((()=>{(async()=>{const t=this.getParams();await this.call.func.prepare(t).call(!0)})().catch((t=>{eo.handleErrorUI(t)}))})).show()}widget(){const t=s.inputs(Object.entries(this.inputs).filter((([t,e])=>!["table","sequence"].includes(t))).map((([t,e])=>e))),e=s.button("Get Region",(()=>{(async()=>{const t=this.getParams();await this.call.func.prepare(t).call(!0)})().catch((t=>{eo.handleErrorUI(t)}))}));return a.Widget.fromRoot(s.divV([t,s.div(e)]))}}var gi=n(8754);async function yi(t,e,n,i,o){const r=await async function(t,e,n,i,o){const r=(0,vt.R)(e,o),s=o.getSeqHandler(e).getNewColumnFromList("ref",[n]),l=o.getSeqHandler(s).getSplitted(0),c=i===ft.IDENTITY?function(t,e){const n=e.columns.length,i=new Array(n),o=new Array(n),r=new Array(n);for(let s=0;s<n;++s){const n=e.columns.byIndex(s);i[s]=n.getRawData(),o[s]=n.categories.indexOf("");const a=s<t.length?t.getOriginal(s):wt._S;r[s]=n.categories.indexOf(a)}const s=a.Column.float("Identity",e.rowCount),l=s.getRawData();for(let n=0;n<e.rowCount;++n){l[n]=0;for(let e=0;e<t.length;++e)(i[e]?i[e][n]:0)===r[e]&&++l[n];l[n]/=t.length}return s}(l,r):i===ft.SIMILARITY?await async function(t,e,n){const i=e.columns.toList();return await(0,bt.uL)(i,t,n)}(l,r,o):null;if(null===c)throw new Error(`In bio library: Unknown sequence scoring method: ${i}`);return c.name=t.columns.getUnusedName(c.name),t.columns.add(c),c}(t,e,n,i,o);for(let t=0;t<r.length;t++)e.isNone(t)&&r.set(t,null,!1);return r}var bi=n(294),vi=n(330);const wi=OCL;var Ci=n(9099);class Ai{monomerSymbol;constructor(t){this.monomerSymbol=t}atoms;bonds;rGroups;get atomCount(){return this.atoms.count}get bondCount(){return this.bonds.count}shiftR1GroupToOrigin(){const t=this.rGroups.getAtomicIdx(1);if(null===t)throw new Error(`Cannot find R1 group for monomer ${this.monomerSymbol}`);const{x:e,y:n}=this.atoms.atomCoordinates[t];this.atoms.shift({x:-e,y:-n})}alignR2AlongX(){const t=this.rGroups.getAtomicIdx(2);if(null===t)throw new Error(`Cannot find R2 group for monomer ${this.monomerSymbol}`);const e=this.atoms.atomCoordinates[t],n=e.y/e.x,i=Math.atan(n);if(isNaN(i))throw new Error(`Cannot calculate angle for R2 group for monomer ${this.monomerSymbol}`);this.rotateCoordinates(-i)}shiftMonomerToDefaultPosition(){this.shiftR1GroupToOrigin(),null!==this.rGroups.getAtomicIdx(2)&&this.alignR2AlongX()}deleteBondLineWithSpecifiedRGroup(t){this.rGroups.deleteBondLineWithSpecifiedRGroup(t)}shiftCoordinates(t){this.atoms.shift(t)}rotateCoordinates(t){this.atoms.rotate(t)}getBondLines(){return this.bonds.getBondLines()}getAtomLines(){return this.atoms.atomLines}removeRGroups(t){this.rGroups.removeRGroups(t)}replaceRGroupWithAttachmentAtom(t,e){this.rGroups.replaceRGroupWithAttachmentAtom(t,e)}getAttachmentAtomByRGroupId(t){return this.rGroups.getAttachmentAtomIdByRGroupId(t)}shiftBonds(t){this.bonds.shift(t)}capRGroups(t){this.rGroups.capRGroups(t)}}var Si=n(6956);class xi{atoms;bonds;constructor(t,e,n){this.atoms=e,this.bonds=n,this.rGroupIdToAtomicIndexMap=t.getRGroupIdToAtomicIdxMap()}rGroupIdToAtomicIndexMap;rGroupBondPositionMap=new Map;getAtomicIdx(t){const e=this.rGroupIdToAtomicIndexMap.get(t);return void 0===e?null:e}removeRGroupsFromAtomBlock(t){t.forEach((t=>{if(void 0===this.rGroupIdToAtomicIndexMap.get(t))throw new Error(`Cannot find atomic index for R group ${t}`)}));const e=Array.from(this.rGroupIdToAtomicIndexMap.entries()).filter((([e,n])=>t.includes(e))).map((([t,e])=>e));this.atoms.deleteAtoms(e)}removeRGroups(t){this.removeRGroupsFromAtomBlock(t),t.forEach((t=>{const e=this.replaceRGroupInBondsByDummy(t);this.rGroupBondPositionMap.set(t,e)}))}replaceRGroupInBondsByDummy(t){const e=this.rGroupIdToAtomicIndexMap.get(t);if(this.rGroupBondPositionMap.has(t))throw new Error(`R group ${t} is already handled`);const n=this.bonds.getPositionsInBonds(e+1);if(0===n.length)throw new Error(`Cannot find position for R group ${t}`);if(n.length>1)throw new Error(`More than one position for R group ${t}`);const i=n[0];return this.bonds.replacePositionsInBondsByDummy([i]),this.bonds.removeAtomIdFromBonds(e+1),this.removeRGroupFromAtomicIdxMap(t,e),i}removeRGroupFromAtomicIdxMap(t,e){this.rGroupIdToAtomicIndexMap.delete(t);for(const[t,n]of this.rGroupIdToAtomicIndexMap)n>e&&this.rGroupIdToAtomicIndexMap.set(t,n-1)}deleteBondLineWithSpecifiedRGroup(t){const e=this.rGroupBondPositionMap.get(t);if(!e)throw new Error(`Cannot find position for R group ${t}`);const{bondLineIdx:n}=e;this.bonds.deleteBondLines([n]),this.rGroupBondPositionMap.delete(t),this.rGroupIdToAtomicIndexMap.delete(t),this.rGroupBondPositionMap.forEach((t=>{t.bondLineIdx>n&&(t.bondLineIdx-=1)}))}replaceRGroupWithAttachmentAtom(t,e){const n=this.rGroupBondPositionMap.get(t);if(!n)throw new Error(`Cannot find position for R group ${t}`);const{bondLineIdx:i,nodeIdx:o}=n;this.bonds.bondedAtoms[i][o]=e}getAttachmentAtomIdByRGroupId(t){const e=this.rGroupBondPositionMap.get(t);if(!e)throw new Error(`Cannot find position for R group ${t}`);const{bondLineIdx:n,nodeIdx:i}=e;return this.bonds.bondedAtoms[n][(i+1)%2]}capRGroups(t){this.rGroupIdToAtomicIndexMap.forEach(((e,n)=>{const i=t[n-1];i===Si.mP?(this.removeRGroups([n]),this.deleteBondLineWithSpecifiedRGroup(n)):this.atoms.replaceRGroupSymbolByElement(e,i)}))}}class Ei{coordinates=[];rawAtomLines=[];get count(){return this.coordinates.length}get atomCoordinates(){return this.coordinates}replaceRGroupSymbolByElement(t,e){this.rawAtomLines[t]=this.rawAtomLines[t].replace("R#",e)}deleteAtoms(t){this.coordinates=this.coordinates.filter(((e,n)=>!t.includes(n))),this.rawAtomLines=this.rawAtomLines.filter(((e,n)=>!t.includes(n)))}shift(t){this.coordinates=this.coordinates.map((e=>{const n=e.x+t.x,i=e.y+t.y;if(isNaN(n)||isNaN(i))throw new Error(`Cannot shift coordinates by ${t.x}, ${t.y}`);return{x:n,y:i}}))}rotate(t){this.coordinates=this.coordinates.map((e=>{const n=e.x,i=e.y,o=n*Math.cos(t)-i*Math.sin(t),r=n*Math.sin(t)+i*Math.cos(t);if(isNaN(o)||isNaN(r))throw new Error(`Cannot rotate coordinates by ${t}`);return{x:o,y:r}}))}}class Ti extends Ei{constructor(t){super(),this.rawAtomLines=t.getAtomLines(),this.coordinates=this.rawAtomLines.map((t=>({x:parseFloat(t.substring(0,10)),y:parseFloat(t.substring(10,20))})))}get atomLines(){return this.rawAtomLines.map(((t,e)=>{const n=this.coordinates[e];return`${n.x.toFixed(4).padStart(10," ")}${n.y.toFixed(4).padStart(10," ")}${t.substring(20)}`}))}}class _i{bondedAtomPairs=[];rawBondLines=[];get count(){return this.bondedAtomPairs.length}get bondedAtoms(){return this.bondedAtomPairs}deleteBondLines(t){this.rawBondLines=this.rawBondLines.filter(((e,n)=>!t.includes(n))),this.bondedAtomPairs=this.bondedAtomPairs.filter(((e,n)=>!t.includes(n)))}getPositionsInBonds(t){const e=[];return this.bondedAtomPairs.forEach(((n,i)=>{n.forEach(((n,o)=>{n===t&&e.push({bondLineIdx:i,nodeIdx:o})}))})),e}replacePositionsInBondsByDummy(t,e){void 0===e&&(e=-1),t.forEach((t=>{const{bondLineIdx:n,nodeIdx:i}=t;this.bondedAtomPairs[n][i]=e}))}removeAtomIdFromBonds(t){this.bondedAtomPairs=this.bondedAtomPairs.map((e=>e.map((e=>e>t?e-1:e))))}shift(t){this.bondedAtomPairs=this.bondedAtomPairs.map((e=>e.map((e=>e+t))))}}class Mi extends _i{constructor(t){super(),this.rawBondLines=t.getBondLines(),this.bondedAtomPairs=this.rawBondLines.map((t=>[parseInt(t.substring(0,3)),parseInt(t.substring(3,6))]))}getBondLines(){return this.bondedAtomPairs.map(((t,e)=>{if(t.some((t=>-1===t)))throw new Error(`Bonded pair ${t} contains -1`);return`${t[0].toString().padStart(3," ")}${t[1].toString().padStart(3," ")}${this.rawBondLines[e].substring(6)}`}))}}class Ii extends Ai{constructor(t,e){super(e);const n=Re.getInstance(t);this.atoms=new Ti(n),this.bonds=new Mi(n),this.rGroups=new xi(n,this.atoms,this.bonds),this.shiftMonomerToDefaultPosition()}}class Li extends Ei{molfileHandler;constructor(t){super(),this.molfileHandler=t,this.rawAtomLines=t.getAtomLines(),this.coordinates=this.getCoordinates()}getCoordinates(){const t=this.molfileHandler.x,e=this.molfileHandler.y;return Array.from(t).map(((t,n)=>({x:t,y:e[n]})))}get atomLines(){const t=/^(M V30 [^-]*)(-?\d+\.\d+)( )(-?\d+\.\d+)( -?\d+\.\d+.*)$/,e=/\sRGROUPS=\(\d+(\s+\d+)*\)/;return this.rawAtomLines.map(((n,i)=>{const o=this.coordinates[i],r=o.x.toFixed(4)+"00",s=o.y.toFixed(4)+"00";return n.replace(t,((t,e,n,i,o,a)=>e+r+i+s+a)).replace(e,"")}))}replaceRGroupSymbolByElement(t,e){super.replaceRGroupSymbolByElement(t,e);const n=this.rawAtomLines[t].substring(3).split(" ");n.length>7&&(this.rawAtomLines[t]=`M ${n.slice(0,7).join(" ")}`)}}class Ni extends _i{molfileHandler;constructor(t){super(),this.molfileHandler=t,this.rawBondLines=t.getBondLines(),this.bondedAtomPairs=this.getBondedAtomPairs()}getBondedAtomPairs(){return this.molfileHandler.pairsOfBondedAtoms.map((t=>[t[0],t[1]]))}getBondLines(){const t=/^(M\s+V30\s+\d+\s+\d+\s+)(\d+)(\s+)(\d+)(.*)$/;return this.bondedAtomPairs.map(((e,n)=>{if(e.some((t=>-1===t)))throw new Error(`Bonded pair ${e} contains -1`);return this.rawBondLines[n].replace(t,((t,n,i,o,r,s)=>`${n}${e[0]}${o}${e[1]}${s}`))}))}}class Pi extends Ai{constructor(t,e){super(e);const n=Re.getInstance(t);this.atoms=new Li(n),this.bonds=new Ni(n),this.rGroups=new xi(n,this.atoms,this.bonds),this.shiftMonomerToDefaultPosition()}}class $i{static getInstance(t,e){if(Re.isMolfileV2K(t))return new Ii(t,e);if(Re.isMolfileV3K(t))return new Pi(t,e);throw new Error("Unsupported molfile version")}}class Ri{monomerSymbol;monomerIdx;helm;monomerLib;molfileWrapper;capGroupElements=[];static molfileV2KToV3KCache=new Map;constructor(t,e,n,i,o,r){this.monomerSymbol=t,this.monomerIdx=e,this.helm=n,this.monomerLib=r;const s=this.getLibraryMonomerObject();let a=s.molfile;Re.isMolfileV2K(a)&&(a=this.convertMolfileToV3KFormat(a,t,o)),this.molfileWrapper=$i.getInstance(a,t),this.capGroupElements=this.getCapGroupElements(s),this.removeRGroups(n.bondedRGroupsMap[e]),this.capRemainingRGroups(),this.shiftCoordinates(i)}get atomCount(){return this.molfileWrapper.atomCount}get bondCount(){return this.molfileWrapper.bondCount}convertMolfileToV3KFormat(t,e,n){if(Ri.molfileV2KToV3KCache.has(t))return Ri.molfileV2KToV3KCache.get(t);let i=null;try{if(i=n.get_mol(t,JSON.stringify({mergeQueryHs:!0})),i){const e=i.get_v3Kmolblock();return Ri.molfileV2KToV3KCache.set(t,e),e}throw new Error(`Cannot convert ${e} to molV3000`)}finally{i?.delete()}}getLibraryMonomerObject(){const t=this.helm.getPolymerTypeByMonomerIdx(this.monomerIdx),e=this.monomerLib.getMonomer(t,this.monomerSymbol);if(!e)throw new Error(`Monomer ${this.monomerSymbol} is not found in the library`);return e}getCapGroupElements(t){return t.rgroups.map((t=>(t.capGroupSmiles||t.capGroupSMILES).replace(/(\[|\]|\*|:|\d)/g,"")))}shiftCoordinates(t){this.molfileWrapper.shiftCoordinates(t)}getAtomLines(){return this.molfileWrapper.getAtomLines()}getBondLines(){return this.molfileWrapper.getBondLines()}removeRGroups(t){this.molfileWrapper.removeRGroups(t)}capRemainingRGroups(){this.molfileWrapper.capRGroups(this.capGroupElements)}replaceRGroupWithAttachmentAtom(t,e){this.molfileWrapper.replaceRGroupWithAttachmentAtom(t,e)}getAttachmentAtomByRGroupId(t){return this.molfileWrapper.getAttachmentAtomByRGroupId(t)}deleteBondLineWithSpecifiedRGroup(t){this.molfileWrapper.deleteBondLineWithSpecifiedRGroup(t)}shiftBonds(t){this.molfileWrapper.shiftBonds(t)}}class ki{rdKitModule;monomerLib;constructor(t,e,n){this.rdKitModule=e,this.monomerLib=n,this.helm=new Ci.f(t)}monomerWrappers=[];helm;addMonomer(t,e,n){if(t===wt.b9[gt.Hi.HELM])return;const i=this.monomerWrappers.length,o=new Ri(t,i,this.helm,n,this.rdKitModule,this.monomerLib);this.monomerWrappers.push(o)}getAtomNumberShifts(){const t=[];let e=0;return this.monomerWrappers.forEach((n=>{t.push(e),e+=n.getAtomLines().length})),t}restoreBondsBetweenMonomers(){this.helm.bondData.forEach((t=>{const e=t.map((t=>t.monomerIdx)),n=t.map((t=>t.rGroupId)),i=e.map((t=>this.monomerWrappers[t])),o=i[1].getAttachmentAtomByRGroupId(n[1]);i[0].replaceRGroupWithAttachmentAtom(n[0],o),i[1].deleteBondLineWithSpecifiedRGroup(n[1])}))}compileToMolfile(){const t=[],e=[],n=this.getAtomNumberShifts();this.monomerWrappers.forEach(((t,e)=>{t.shiftBonds(n[e])})),this.restoreBondsBetweenMonomers();const i=new bi.Cg;for(const[n,o]of ot().enumerate(this.monomerWrappers)){const r=t.length,s=e.length;t.push(...n.getAtomLines()),e.push(...n.getBondLines());const a="RNA"==this.helm.getPolymerTypeByMonomerIdx(o)?Ft.o.NUCLEOTIDE:Ft.o.AA;i.set(o,{biotype:a,symbol:n.monomerSymbol,atoms:ot().count(r).take(n.atomCount).toArray(),bonds:ot().count(s).take(n.bondCount).toArray()})}const o=t.length,r=e.length;return{molfile:[this.getV3KHeader(o,r),this.getV3KAtomBlock(t),this.getV3KBondBlock(e),"M V30 END CTAB\nM END"].join("\n"),monomers:i}}getV3KHeader(t,e){return`\n Datagrok\n\n 0 0 0 0 0 0 0 0 0 0999 V3000\nM V30 BEGIN CTAB\nM V30 COUNTS ${t} ${e} 0 0 1`}getV3KAtomBlock(t){const e=/^(M V30 )(\d+)( .*)$/;return["M V30 BEGIN ATOM",...t.map(((t,n)=>{const i=n+1;return t.replace(e,((t,e,n,o)=>e+i+o))})),"M V30 END ATOM"].join("\n")}getV3KBondBlock(t){const e=/^(M V30 )(\d+)( .*)$/;return["M V30 BEGIN BOND",...t.map(((t,n)=>{const i=n+1;return t.replace(e,((t,e,n,o)=>e+i+o))})),"M V30 END BOND"].join("\n")}}class Oi{constructor(t){this.molfileHandler=Re.getInstance(t)}molfileHandler;get monomerSymbols(){return this.molfileHandler.atomTypes}getMonomerShifts(t){return{x:this.molfileHandler.x[t],y:this.molfileHandler.y[t]}}}class Hi{helmHelper;rdKitModule;monomerLib;constructor(t,e,n){this.helmHelper=t,this.rdKitModule=e,this.monomerLib=n}convertToSmiles(t){const e=t.dataFrame,n=this.getSmilesList(t),i=`smiles(${t.name})`,o=e?e.columns.getUnusedName(i):i;return a.Column.fromStrings(o,n.map((t=>null===t?"":t)))}getSmilesList(t){return this.convertToMolfileV3KColumn(t).toList().map((t=>a.chem.convert(t,a.chem.Notation.MolBlock,a.chem.Notation.Smiles)))}molV3KtoMolV3KOCL(t){try{if(!t)return"";return wi.Molecule.fromMolfile(t).toMolfileV3().replace("STERAC1","STEABS")}catch(t){const[e,n]=(0,Ct.AP)(t);return eo.logger.error(e,void 0,n),""}}getMolV3000ViaOCL(t,e){const n=t.map((t=>{if(null===t)return"";const e=t.get_v3Kmolblock();return t.delete(),e})),i=new Array(n.length),o=a.TaskBarProgressIndicator.create("Handling chirality...");for(let t=0;t<n.length;t++){i[t]=this.molV3KtoMolV3KOCL(n[t]);const e=t/n.length*100;o.update(e,`${e?.toFixed(2)}% of molecules completed`)}return o.close(),a.Column.fromStrings(e,i)}convertToRdKitBeautifiedMolfileColumn(t,e,n,i){const o=t.dataFrame,r=this.convertToMolfileV3KColumn(t).toList().map((t=>{if(""===t)return null;const e=n.get_mol(t);return e?(e.set_new_coords(),e.normalize_depiction(1),e.straighten_depiction(!0),e):null})),s=`molfile(${t.name})`,l=o?o.columns.getUnusedName(s):s;return e?this.getMolV3000ViaOCL(r,l):a.Column.fromStrings(l,r.map((t=>{if(null===t)return"";const e=t.get_v3Kmolblock();return t.delete(),e})))}convertToMolfileV3KColumn(t){const e=t.dataFrame,n=this.convertToMolfileV3K(t.toList()).map((t=>t.molfile)),i=(0,vi.kA)(e,`molfileV3K(${t.name})`);return a.Column.fromList("string",i,n)}convertToMolfileV3K(t){const e=new Array(t.length);for(let n=0;n<t.length;++n){const i=t[n];if(!i){e[n]=bi.vF.createEmpty();continue}let o;try{o=this.getPolymerMolfile(i)}catch(t){const[e,n]=(0,Ct.AP)(t);eo.logger.error(e,void 0,n),o=bi.vF.createEmpty()}e[n]=o}return e}getPolymerGraphColumn(t){const e=t.toList(),n=this.helmHelper.getMolfiles(e);return a.Column.fromStrings("mols",n)}getPolymerMolfile(t){const e=this.helmHelper.removeGaps(t),n=e.resHelm,i=new Map;for(const[t,n]of e.monomerMap?.entries()??[])i.set(n,t);const o=this.helmHelper.getMolfiles([n])[0],r=new Oi(o),s=new ki(n,this.rdKitModule,this.monomerLib);r.monomerSymbols.forEach(((t,e)=>{const n=r.getMonomerShifts(e);s.addMonomer(t,e,n)}));const a=s.compileToMolfile(),l=new bi.Cg;for(const[t,e]of a.monomers.entries()){const n=i.get(t);l.set(n,e)}return new bi.vF(a.molfile,l)}}class Gi{seqHelper;_column;_units;_notation;_defaultGapOriginal;notationProvider;_splitter=null;constructor(t,e){if(this.seqHelper=e,t.type!==a.TYPE.STRING)throw new Error(`Unexpected column type '${t.type}', must be '${a.TYPE.STRING}'.`);this._column=t;const n=this._column.meta.units;if(!n)throw new Error("Units are not specified in column");this._units=n,this._notation=this.getNotation(),this.isCustom()&&(this.notationProvider=this.column.temp[Ut.notationProvider]??null);const i=this.isFasta()?wt.b9[gt.Hi.FASTA]:this.isSeparator()?wt.b9[gt.Hi.SEPARATOR]:this.isHelm()?wt.b9[gt.Hi.HELM]:this.isCustom()?this.notationProvider?.defaultGapOriginal??wt.b9[gt.Hi.SEPARATOR]:void 0;if(null==i)throw new Error(`Unexpected defaultGapOriginal for notation '${this.notation}'`);if(this._defaultGapOriginal=i,!this.column.tags.has(gt.gp.aligned)||!this.column.tags.has(gt.gp.alphabet)||!this.column.tags.has(gt.gp.alphabetIsMultichar)&&!this.isHelm()&&this.alphabet===gt.YI.UN)if(this.isFasta())this.seqHelper.setUnitsToFastaColumn(this);else if(this.isSeparator()){const e=t.getTag(gt.gp.separator);this.seqHelper.setUnitsToSeparatorColumn(this,e)}else if(this.isHelm())this.seqHelper.setUnitsToHelmColumn(this);else{if(!this.isCustom())throw new Error(`Unexpected units '${this.column.meta.units}'.`);this.notationProvider.setUnits(this)}if(!this.column.tags.has(gt.gp.alphabetIsMultichar))if(this.isHelm())this.column.setTag(gt.gp.alphabetIsMultichar,"true");else if(["UN"].includes(this.alphabet))throw new Error(`For column '${this.column.name}' of alphabet '${this.alphabet}' tag '${gt.gp.alphabetIsMultichar}' is mandatory.`);this.columnVersion=this.column.version,!this.isSeparator()||this.isCustom()&&this.notationProvider||t.temp.seqHandlerRefined||(this.refineSeparatorNotation(),t.temp.seqHandlerRefined=!0)}async refineSeparatorNotation(){const t=((t,e,n)=>{const i={};let o=!0,r=null;for(const e of t){const t=e?n(e):[];if(null===r?r=t.length:t.length!==r&&(o=!1),t.length>=3)for(const e of t)e in i||(i[e]=0),i[e]+=1}return{freq:i,sameLength:o}})([...new Set((this.column.length<100?ot().count(0).take(Math.min(100,this.column.length)).map((t=>this.column.get(t))):this.column.categories.slice(0,100)).map((t=>t?t.substring(0,500):"")).filter((t=>0!==t.length)))],0,(t=>t.split(this.separator)));let e=!1;const n=[{package:"SequenceTranslator",name:"refineNotationProviderForHarmonizedSequence"}];for(const i of n)try{const n=a.Func.find(i);if(0===n.length)continue;const o=n[0].prepare({col:this.column,stats:t,separator:this.separator}),r=(await o.call()).getOutputParamValue();e||=r}catch(t){console.error(t)}e&&(delete this.column.temp[Ut.seqHandler],this.column.fireValuesChanged())}static setTags(t){const e=t.column.meta.units;if([gt.Hi.FASTA,gt.Hi.SEPARATOR].includes(e)){if(!t.column.getTag(gt.gp.alphabet)&&0===Object.keys(t.stats.freq).length)throw new Error("Alphabet is empty and not annotated.");let e=t.column.getTag(gt.gp.aligned);null===e&&(e=t.stats.sameLength?"SEQ.MSA":"SEQ",t.column.setTag(gt.gp.aligned,e));let n=t.column.getTag(gt.gp.alphabet);if(null===n&&(n=(0,Ot.pc)(t.stats.freq,gt.q7),t.column.setTag(gt.gp.alphabet,n)),n===gt.YI.UN){const e=Object.keys(t.stats.freq).length,n=Object.keys(t.stats.freq).some((t=>t.length>1));t.column.setTag(gt.gp.alphabetSize,e.toString()),t.column.setTag(gt.gp.alphabetIsMultichar,n?"true":"false")}}else if(e===gt.Hi.HELM){let e=t.column.getTag(gt.gp.alphabet);null===e&&(e=(0,Ot.p0)(t.stats.freq,gt.q7,t.defaultGapOriginal),t.column.setTag(gt.gp.alphabet,e))}}get column(){return this._column}get length(){return this._column.length}get units(){return this._units}get notation(){return this._notation}get defaultGapOriginal(){return this._defaultGapOriginal}get separator(){const t=this.column.getTag(gt.gp.separator)??void 0;if(this.notation===gt.Hi.SEPARATOR&&void 0===t)throw new Error(`Separator is mandatory for column '${this.column.name}' of notation '${this.notation}'.`);return t}get aligned(){const t=this.column.getTag(gt.gp.aligned);if(!t&&(this.isFasta()||this.isSeparator()))throw new Error("Tag aligned not set");return t}get alphabet(){const t=this.column.getTag(gt.gp.alphabet);if(!t&&(this.isFasta()||this.isSeparator()))throw new Error("Tag alphabet not set");return t}get defaultBiotype(){return this.alphabet===gt.YI.RNA||this.alphabet===gt.YI.DNA?Ft.o.NUCLEOTIDE:Ft.o.AA}get helmCompatible(){return this.column.getTag(gt.gp.isHelmCompatible)}getAlphabetSize(){if(this.notation==gt.Hi.HELM||this.alphabet==gt.YI.UN){const t=this.column.getTag(gt.gp.alphabetSize);let e;if(t)e=parseInt(t);else{const t=this.stats;e=Object.keys(t.freq).length}return e}switch(this.alphabet){case gt.YI.PT:return 20;case gt.YI.DNA:case gt.YI.RNA:return 4;case"NT":return console.warn("Unexpected alphabet 'NT'."),4;default:throw new Error(`Unexpected alphabet '${this.alphabet}'.`)}}getAlphabetIsMultichar(){return this.notation===gt.Hi.HELM||this.alphabet===gt.YI.UN&&"true"===this.column.getTag(gt.gp.alphabetIsMultichar)}cached=!0;_splitted=null;columnVersion=null;getSplitted(t,e){if(this.cached&&void 0===e){this.column.version===this.columnVersion&&null!==this._splitted||(this.columnVersion=this.column.version,this._splitted=new Array(this.column.length));let e=this._splitted[t]?this._splitted[t].deref():void 0;if(!e){const n=this.column.get(t);e=this.splitter(n),this._splitted[t]=new WeakRef(e)}return e}{const n=this.column.get(t);return this.getSplitter(e)(n)}}getMonomerAtPosition(t,e,n){if(this.isCanonicalAlphabet&&this.isFasta()&&!this.getAlphabetIsMultichar()){const i=(this.column.get(t)??"")[e];return n?i===wt.b9[gt.Hi.FASTA]?wt._S:i??wt._S:i??""}const i=this.getSplitted(t);return e<0||e>=i.length?this.defaultGapOriginal:n?i.getCanonical(e):i.getOriginal(e)}getMonomersAtPosition(t,e){const n=this.column.length,i=new Array(n).fill(wt._S);if(this.isCanonicalAlphabet&&this.isFasta()&&!this.getAlphabetIsMultichar()){const o=this.column.categories,r=this.column.getRawData();for(let s=0;s<n;s++){const n=o[r[s]]??"";if(t<n.length){const o=n[t];i[s]=e?o===wt.b9[gt.Hi.FASTA]?wt._S:o??wt._S:o??""}}}else for(let o=0;o<n;o++){const n=this.getSplitted(o);t>=0&&t<n.length&&(i[o]=e?n.getCanonical(t):n.getOriginal(t))}return i}getValue(t,e){return this.column.get(t),new jt(t,this)}getHelm(t){let e;const n=this.column.get(t);return e=this.notation===gt.Hi.HELM?n:this.notation===gt.Hi.CUSTOM?this.notationProvider.getHelm(n,{}):this.getConverter(gt.Hi.HELM)(n),e}_stats=null;get isCanonicalAlphabet(){const t=this.alphabet;return t===gt.YI.DNA||t===gt.YI.RNA||t===gt.YI.PT}get stats(){if(null===this._stats){const t={};let e=!0,n=null;const i=this.column.length;for(let o=0;o<i;++o){const i=this.getSplitted(o);null==n?n=i.length:i.length!==n&&(e=!1);for(let e=0;e<i.length;++e){const n=i.getCanonical(e);n in t||(t[n]=0),t[n]+=1}}this._stats={freq:t,sameLength:e}}return this._stats}_maxLength=null;get maxLength(){return null===this._maxLength&&(this._maxLength=0===this.column.length?0:ot().count(0).take(this.column.length).map((t=>this.getSplitted(t).length)).reduce(((t,e)=>t>e?t:e),0)),this._maxLength}_posList=null;get posList(){if(null===this._posList){const t=this.column.getTag(gt.gp.positionNames);this._posList=t?t.split(gt.z1).map((t=>t.trim())):ot().count(1).take(this.maxLength).map((t=>t.toString())).toArray()}return this._posList}isFasta(){return this.notation===gt.Hi.FASTA}isSeparator(){return this.notation===gt.Hi.SEPARATOR||!!this.separator}isFastaOrSeparator(){return this.isFasta()||this.isSeparator()}isHelm(){return this.notation===gt.Hi.HELM}isCustom(){return this.notation===gt.Hi.CUSTOM}isRna(){return this.alphabet===gt.YI.RNA}isDna(){return this.alphabet===gt.YI.DNA}isPeptide(){return this.alphabet===gt.YI.PT}isMsa(){return!!this.aligned&&this.aligned.toUpperCase().includes("MSA")}isHelmCompatible(){return"true"===this.helmCompatible}isGap(t){return!t||t===this._defaultGapOriginal}getNotation(){if(this.units.toLowerCase().startsWith(gt.Hi.FASTA))return gt.Hi.FASTA;if(this.units.toLowerCase().startsWith(gt.Hi.SEPARATOR))return gt.Hi.SEPARATOR;if(this.units.toLowerCase().startsWith(gt.Hi.HELM))return gt.Hi.HELM;if(this.units.toLowerCase().startsWith(gt.Hi.CUSTOM))return gt.Hi.CUSTOM;throw new Error(`Column '${this.column.name}' has unexpected notation '${this.units}'.`)}getHelmWrappers(){return[this.isDna()||this.isRna()||this.isHelmCompatible()?"RNA1{":"PEPTIDE1{",this.isDna()?"d(":this.isRna()?"r(":"",this.isDna()||this.isRna()?")p":"","}$$$$"]}getNewColumn(t,e,n,i){const o=this.column,r=t.toLowerCase()+"("+o.name+")",s=n??o.dataFrame?.columns.getUnusedName(r)??r,l=a.Column.fromList("string",s,i??new Array(this.column.length).fill(""));if(l.semType=a.SEMTYPE.MACROMOLECULE,l.meta.units=t,t===gt.Hi.SEPARATOR){if(!e)throw new Error(`Notation '${gt.Hi.SEPARATOR}' requires separator value.`);l.setTag(gt.gp.separator,e)}l.setTag(a.TAGS.CELL_RENDERER,t===gt.Hi.HELM?"helm":"sequence");const c=o.getTag(gt.gp.aligned);c&&l.setTag(gt.gp.aligned,c);let h=o.getTag(gt.gp.alphabet);h||this.notation!==gt.Hi.HELM||t===gt.Hi.HELM||(h=gt.YI.UN),null!=h&&l.setTag(gt.gp.alphabet,h);let u=o.getTag(gt.gp.alphabetSize);null!=h&&u&&l.setTag(gt.gp.alphabetSize,u);const d=o.getTag(gt.gp.alphabetIsMultichar);return null!=h&&void 0!==d&&l.setTag(gt.gp.alphabetIsMultichar,d),t==gt.Hi.HELM&&(u=this.getAlphabetSize().toString(),l.setTag(gt.gp.alphabetSize,u)),l}getNewColumnFromList(t,e){return this.getNewColumn(this.notation,this.separator,t,e)}static unitsStringIsValid(t){return t=t.toLowerCase(),[gt.Hi.FASTA,gt.Hi.SEPARATOR,gt.Hi.HELM].some((e=>t.startsWith(e.toLowerCase())))}static getNewColumnFromParams(t,e,n){if(!Gi.unitsStringIsValid(n))throw new Error("Invalid format of 'units' parameter");const i=a.Column.fromList("string",e,new Array(t).fill(""));return i.semType=a.SEMTYPE.MACROMOLECULE,i.meta.units=n,i}get splitter(){return null===this._splitter&&(this._splitter=this.getSplitter()),this._splitter}getSplitter(t){let e=null;if(e=this.notationProvider?this.notationProvider.splitter:null,e)return e;if(this.units.toLowerCase().startsWith(gt.Hi.FASTA))return null===this.column.getTag(gt.gp.alphabet)||this.getAlphabetIsMultichar()?gt.J9:Ot.tm;if(this.units.toLowerCase().startsWith(gt.Hi.SEPARATOR))return(0,gt.dh)(this.separator,t);if(this.units.toLowerCase().startsWith(gt.Hi.HELM))return gt.qp;throw new Error(`Unexpected units ${this.units} .`)}split(t){return this.splitter(t)}getDistanceFunctionName(){if(!this.isFasta())throw new Error("Only FASTA notation is supported");if(this.isMsa())return ue.Z.HAMMING;switch(this.alphabet){case gt.YI.DNA:case gt.YI.RNA:case gt.YI.PT:}return ue.Z.LEVENSHTEIN}getDistanceFunction(){return ue.V[this.getDistanceFunctionName()]()}async checkHelmCompatibility(){if(this.column.tags.has(gt.gp.isHelmCompatible))return"true"===this.column.getTag(gt.gp.isHelmCompatible);const t=(await(0,bt.pj)()).getMonomerLib().getMonomerSymbolsByType("PEPTIDE"),e=new Set(t),n=((0,gt.dh)(this.separator),new Set),i=this.column.length,o=this.column.getRawData();for(let t=0;t<i;++t){const i=o[t];if(!(i in n)){n.add(i);const o=this.getSplitted(t);for(let t=0;t<o.length;++t){const n=o.getCanonical(t);if(!e.has(n))return this.column.setTag(gt.gp.isHelmCompatible,"false"),!1}}}return this.column.setTag(gt.gp.isHelmCompatible,"true"),!0}toFasta(t){return t===gt.Hi.FASTA}toSeparator(t){return t===gt.Hi.SEPARATOR}toHelm(t){return t===gt.Hi.HELM}convertHelmToFastaSeparator(t,e,n,i){i||(i=this.toFasta(e)?wt.b9[gt.Hi.FASTA]:wt.b9[gt.Hi.SEPARATOR]),n||(n=this.toFasta(e)?"":this.separator);const o=t.startsWith("RNA"),r=(0,gt.qp)(t),s=[];for(let t=0;t<r.length;++t){let n=r.getOriginal(t);if(o&&(n=n.replace(bn.EK,"$1")),n===wt.b9[gt.Hi.HELM])s.push(i);else if(this.toFasta(e)&&n.length>1){const t="["+n+"]";s.push(t)}else s.push(n)}return s.join(n)}convert(t,e){const n=this.getJoiner({notation:t,separator:e}),i=this.getNewColumn(t,e);return i.init((t=>{const e=this.getSplitted(t);return n(e)})),i}getRegion(t,e,n){const i=this.getNewColumn(this.notation,this.separator);i.name=n;const o=t??0,r=e??this.maxLength-1,s=this.getJoiner(),a=r-o+1,l=wt.b9[this.notation];i.init((t=>{const e=this.getSplitted(t),n=new Array(a);for(let t=0;t<a;++t){const i=o+t;n[t]=i<e.length?e.getOriginal(i):l}return s(new Ot.Mu(n,l))}));const c=t=>{const e=t.split(",").map((t=>t.trim())),n=new Array(a);for(let t=0;t<a;++t){const i=o+t;n[t]=i<e.length?e[i]:"?"}return n.join(gt.z1)},h=this.column.getTag(gt.gp.positionNames);h&&i.setTag(gt.gp.positionNames,c(h));const u=this.column.getTag(gt.gp.positionLabels);return u&&i.setTag(gt.gp.positionLabels,c(u)),i}_joiner=void 0;get joiner(){return this._joiner||(this._joiner=this.getJoiner()),this._joiner}getJoiner(t){const e=t?t.notation:this.notation,n=t?t.separator:this.separator;let i;const o=this;switch(e){case gt.Hi.FASTA:i=function(t){return o.joinToFasta(t,o.isHelm())};break;case gt.Hi.SEPARATOR:if(!n)throw new Error(`Separator is mandatory for notation '${e}'.`);i=function(t){return Fi(t,n,o.isHelm())};break;case gt.Hi.HELM:{const t=o.alphabet===gt.YI.DNA||o.alphabet===gt.YI.RNA,e=o.getHelmWrappers();i=function(n){return Di(n,e,t)};break}default:throw new Error(`Unexpected notation '${e}'.`)}return i}getConverter(t,e=void 0){if(t===gt.Hi.SEPARATOR&&!e)throw new Error(`Target separator is not specified for target units '${gt.Hi.SEPARATOR}'.`);const n=this;if(t===gt.Hi.FASTA)return function(t){return n.convertToFasta(t)};if(t===gt.Hi.HELM)return function(t){return n.convertToHelm(t)};if(t===gt.Hi.SEPARATOR)return function(t){return n.convertToSeparator(t,e)};throw new Error}static forColumn(t,e){let n=t.temp[Ut.seqHandler];return n&&n.columnVersion===t.version||(n=t.temp[Ut.seqHandler]=new Gi(t,e)),n}joinToFasta(t,e){const n=new Array(t.length);for(let i=0;i<t.length;++i){const o=t.getOriginal(i);let r=t.getOriginal(i);e&&(r=r.replace(bn.EK,"$1")),o===wt._S?r=wt.b9[gt.Hi.FASTA]:o===bn.q7?r="":r.length>1&&(r="["+r+"]"),n[i]=r}return n.join("")}convertToFasta(t){const e=this.splitter,n=this.isHelm()?this.splitterAsHelmNucl(t):e(t);return this.joinToFasta(n,this.isHelm())}convertToSeparator(t,e){return Fi(this.isHelm()?this.splitterAsHelmNucl(t):this.splitter(t),e,this.isHelm())}convertToHelm(t){if(this.notation==gt.Hi.HELM)return t;const e=this.getHelmWrappers(),n=t.startsWith("DNA")||t.startsWith("RNA");return Di(this.splitter(t),e,n)}splitterAsHelmNucl(t){const e=this.splitter(t),n=new Array(e.length),i=t.startsWith("DNA"),o=t.startsWith("RNA");for(let t=0;t<e.length;++t){let r=e.getOriginal(t);(i||o)&&(r=r.replace(bn.EK,"$1"),r=r===bn.q7?null:r),n[t]=r||null}return new Ot.Mu(n.filter((t=>!!t)),wt.b9[gt.Hi.HELM])}getRendererBack(t,e){const n=this.column.temp;let i=n.rendererBack;return i||(i=n.rendererBack=this.notationProvider.createCellRendererBack(t,e)),i}}function Fi(t,e,n){const i=new Array(t.length);for(let e=0;e<t.length;++e){const o=t.getCanonical(e);let r=t.getOriginal(e);n&&(r=r.replace(bn.EK,"$1")),o===wt._S?r=wt.b9[gt.Hi.SEPARATOR]:o===bn.q7&&(r=""),i[e]=r}return i.join(e)}function Di(t,e,n){const[i,o,r,s]=e,a=new Array(t.length);for(let e=0;e<t.length;++e){const i=t.getCanonical(e);let s=t.getOriginal(e);i===wt._S?s=wt.b9[gt.Hi.HELM]:(n&&(s=s.replace(bn.EK,"$1")),s=1===s.length?`${o}${s}${r}`:`${o}[${s}]${r}`),a[e]=s}return`${i}${a.join(".")}${s}`}class Bi{libHelper;rdKitModule;constructor(t,e){this.libHelper=t,this.rdKitModule=e}getSeqHandler(t){return Gi.forColumn(t,this)}getSeqMonomers(t){const e=this.getSeqHandler(t);return Object.keys(e.stats.freq)}async getHelmToMolfileConverter(t){const e=await(0,Oe.b2)();return new Hi(e,this.rdKitModule,t)}helmToAtomicLevelSingle(t,e,n,i=!0){if(!t)return bi.vF.createEmpty();const o=e.convertToMolfileV3K([t])[0];if(!o||!o.molfile)return bi.vF.createEmpty();let r=null;try{let t=o.molfile;if(i){if(r=this.rdKitModule.get_mol(t),!r)return bi.vF.createEmpty();r.set_new_coords(),r.normalize_depiction(1),r.straighten_depiction(!0),t=r.get_v3Kmolblock()}return n&&(t=e.molV3KtoMolV3KOCL(t)),new bi.vF(t,o.monomers)}catch(t){const[e,n]=(0,Ct.AP)(t);return eo.logger.error(e,void 0,n),bi.vF.createEmpty()}finally{r?.delete()}}async helmToAtomicLevel(t,e,n,i){const o=i??this.libHelper.getMonomerLib(),s=t.dataFrame,l=(0,vi.qj)(s,t.name),c=await this.getHelmToMolfileConverter(o),h=t.toList(),u=new Array(t.length),d=a.Func.find({package:"Chem",name:"beautifyMols"})[0],p=a.Func.find({package:"Chem",name:"convertToV3KViaOCL"})[0];for(let n=0;n<t.length;n++)u[n]=this.helmToAtomicLevelSingle(h[n],c,e&&!p,!d).molfile;if(d){const e=await d.apply({mols:u});if(e&&Array.isArray(e)&&e.length===t.length)for(let n=0;n<t.length;n++)e[n]&&(u[n]=e[n])}if(e&&p){const e=await p.apply({mols:u});if(e&&Array.isArray(e)&&e.length===t.length)for(let n=0;n<t.length;n++)e[n]&&(u[n]=e[n]);else r.shell.warning("OCL function returned an unexpected result")}const m=a.Column.fromStrings(l,u);return m.semType=a.SEMTYPE.MOLECULE,m.meta.units=a.UNITS.Molecule.MOLBLOCK,m.setTag(".sequence-src-col",t.name),{molCol:m,warnings:[]}}setUnitsToFastaColumn(t){if(t.column.semType!==a.SEMTYPE.MACROMOLECULE||t.column.meta.units!==gt.Hi.FASTA)throw new Error(`The column of notation '${gt.Hi.FASTA}' must be '${a.SEMTYPE.MACROMOLECULE}'.`);t.column.meta.units=gt.Hi.FASTA,Gi.setTags(t)}setUnitsToSeparatorColumn(t,e){if(t.column.semType!==a.SEMTYPE.MACROMOLECULE||t.column.meta.units!==gt.Hi.SEPARATOR)throw new Error(`The column of notation '${gt.Hi.SEPARATOR}' must be '${a.SEMTYPE.MACROMOLECULE}'.`);if(!e)throw new Error(`The column of notation '${gt.Hi.SEPARATOR}' must have the separator tag.`);t.column.meta.units=gt.Hi.SEPARATOR,t.column.setTag(gt.gp.separator,e),Gi.setTags(t)}setUnitsToHelmColumn(t){if(t.column.semType!==a.SEMTYPE.MACROMOLECULE)throw new Error(`The column of notation '${gt.Hi.HELM}' must be '${a.SEMTYPE.MACROMOLECULE}'`);t.column.meta.units=gt.Hi.HELM,Gi.setTags(t)}}const Vi="#333333",Wi="rgba(60, 177, 115, 0.1)",Ui="rgba(240, 240, 240, 0.5)",ji="rgba(100, 100, 100, 0.3)";class qi{constructor(t=Ki.DEFAULT_TRACK_HEIGHT,e=Ki.MIN_TRACK_HEIGHT,n=""){this.ctx=null,this.visible=!0,this.title="",this.tooltipEnabled=!1,this.tooltipContent=null,this.height=t,this.defaultHeight=t,this.minHeight=e,this.title=n}init(t){this.ctx=t}getMonomerAt(t,e,n){return null}enableTooltip(t){this.tooltipEnabled=t}setTooltipContentGenerator(t){this.tooltipContent=t}getTooltipContent(t,e){if(!this.tooltipEnabled||!this.tooltipContent)return null;const n=this.getPositionData(t)??new Map;return this.tooltipContent(t,e,n)}getPositionData(t){return null}setVisible(t){this.visible=t}getHeight(){return this.visible?this.height:0}getDefaultHeight(){return this.defaultHeight}getMinHeight(){return this.minHeight}setHeight(t){this.height=Math.max(this.minHeight,t)}resetHeight(){this.height=this.defaultHeight}isVisible(){return this.visible}setTitle(t){this.title=t}getTitle(){return this.title}}class zi extends qi{constructor(t=new Map,e=Ki.DEFAULT_TRACK_HEIGHT,n="",i="WebLogo"){super(e,Ki.DEFAULT_TRACK_HEIGHT,i),this.data=new Map,this.monomerLib=null,this.biotype="HELM_AA",this.hoveredPosition=-1,this.hoveredMonomer=null,this.data=t,this.visible=t.size>0}setHovered(t,e){this.hoveredPosition=t,this.hoveredMonomer=e}getPositionData(t){return this.data.get(t)||null}setupDefaultTooltip(){this.enableTooltip(!0),this.setTooltipContentGenerator(((t,e,n)=>this.createTooltipContent(t,e,n)))}createFrequencyTable(t){let e;switch(this.biotype){case"HELM_BASE":case"HELM_SUGAR":case"HELM_NUCLETIDE":e=Ft.o.NUCLEOTIDE;break;default:e=Ft.o.AA}const n=Array.from(t.values()).reduce(((t,e)=>t+e),0),i={};for(const[e,o]of t.entries())i[e]=Math.max(1,Math.round(o/n*100));const o=(0,hi.F)(i,e,this.monomerLib);return o.style.fontSize="11px",o.style.marginTop="4px",o}createTooltipContent(t,e,n){const i=[];if(i.push(s.divText(`Position: ${t+1}`,{style:{fontWeight:"bold",marginBottom:"6px",fontSize:"13px"}})),e&&(i.push(s.divText(`Monomer: ${e}`,{style:{marginBottom:"6px",fontSize:"13px"}})),n.has(e)&&i.push(s.divText(`${(100*n.get(e)).toFixed(2)}%`,{style:{marginBottom:"6px",fontSize:"13px"}}))),n&&n.size>0){const t=this.createFrequencyTable(n);i.push(t)}else i.push(s.divText("No data available",{style:{fontStyle:"italic",color:"#666"}}));const o=s.divV(i);return o.style.maxHeight="80vh",o}setMonomerLib(t){this.monomerLib=t}setBiotype(t){this.biotype=t}getMonomerAt(t,e,n){if(!this.ctx||!this.visible||0===this.data.size)return null;const i=this.data.get(n);if(!i||0===i.size)return null;const o=e,r=Array.from(i.entries()).sort(((t,e)=>e[1]-t[1])),s=r.reduce(((t,[e,n])=>t+n),0),a=this.height;let l=0;for(const[t,e]of r){const n=e*a/s;if(o>=l&&o<l+n)return t;l+=n}return null}updateData(t){this.data=t,this.visible=t.size>0}draw(t,e,n,i,o,r,s,a){if(!this.ctx||!this.visible||0===this.data.size)return;const l=Math.floor(n/r),c=i-4,h=e+2;for(let u=0;u<l;u++)this.drawWebLogoColumn(u,t,e,n,i,o,r,s,a,h,c)}drawWebLogoColumn(t,e,n,i,o,r,s,a,l,c,h){const u=r+t-1;if(u<0||u>=a)return;const d=this.data.get(u);if(!d||0===d.size)return;const p=e+t*s,m=s-2;r+t===l&&(this.ctx.fillStyle=Wi,this.ctx.fillRect(p,n,s,o)),this.ctx.fillStyle=Ui,this.ctx.fillRect(p+1,c,m,h),this.drawLettersInColumn(u,p,m,c,h,d),this.drawColumnBorder(p,c,m,h)}drawLettersInColumn(t,e,n,i,o,r){const s=Array.from(r.entries()).sort(((t,e)=>e[1]-t[1])),a=s.reduce(((t,[e,n])=>t+n),0),l=Math.min(1,o/(a*o));let c=i;const h=i+o;for(const[i,r]of s){const s=r*o*l,a=Math.max(4,Math.floor(s));if(a<4)continue;const u=t===this.hoveredPosition&&i===this.hoveredMonomer,d=Math.min(a,h-c);if(d<4)break;this.drawLetter(i,e+1,c,n,d,u),c+=d}}drawColumnBorder(t,e,n,i){this.ctx.strokeStyle=ji,this.ctx.lineWidth=1,this.ctx.strokeRect(t+1,e,n,i)}drawLetter(t,e,n,i,o,r=!1){if(!this.ctx)return;const s=this.getMonomerBackgroundColor(t),a=this.getMonomerTextColor(t);this.ctx.fillStyle=s,this.ctx.fillRect(e,n,i,o),r&&(this.ctx.shadowColor="rgba(255, 255, 255, 0.8)",this.ctx.shadowBlur=8,this.ctx.strokeStyle="white",this.ctx.lineWidth=2,this.ctx.strokeRect(e,n,i,o),this.ctx.shadowBlur=0),this.drawLetterSeparators(e,n,i,o),this.drawLetterText(t,e,n,i,o,a)}drawLetterSeparators(t,e,n,i){this.ctx.strokeStyle="rgba(255, 255, 255, 0.4)",this.ctx.lineWidth=1,e+i<e+this.ctx.canvas.height&&(this.ctx.beginPath(),this.ctx.moveTo(t,e+i),this.ctx.lineTo(t+n,e+i),this.ctx.stroke())}drawLetterText(t,e,n,i,o,r){const s=Math.min(.8*o,.8*i);s>=7&&(this.ctx.fillStyle=r,this.ctx.font=`bold ${s}px Roboto, Roboto Local`,this.ctx.textAlign="center",this.ctx.textBaseline="middle",this.ctx.fillText(t,e+i/2,n+o/2))}getMonomerBackgroundColor(t){if(this.monomerLib)try{const e=this.monomerLib.getMonomerColors(this.biotype,t);if(e&&e.backgroundcolor)return e.backgroundcolor}catch(t){console.warn("Error getting background color from monomerLib:",t)}return"#CCCCCC"}getMonomerTextColor(t){const e=this.getMonomerBackgroundColor(t);try{const t=a.Color.fromHtml(e),n=a.Color.getContrastColor(t);return a.Color.toHtml(n)}catch(t){return console.warn("Error calculating contrast color:",t),"#000000"}}}class Yi extends qi{constructor(t,e=Ki.DEFAULT_TRACK_HEIGHT,n="default",i="Conservation"){super(e,Ki.MIN_TRACK_HEIGHT,i),this.data=t,this.colorScheme=n,this.visible=t.length>0}updateData(t){this.data=t,this.visible=t.length>0}draw(t,e,n,i,o,r,s,a){if(!this.ctx||!this.visible||0===this.data.length)return;const l=Math.floor(n/r);for(let n=0;n<l;n++){const l=o+n;if(l>s)break;const c=t+n*r,h=r,u=c+h/2;l-1<this.data.length&&(this.drawConservationBar(l-1,c,h,u,e,i),l===a&&(this.ctx.fillStyle=Wi,this.ctx.fillRect(c,e,h,i)))}}drawConservationBar(t,e,n,i,o,r){if(!this.ctx)return;const s=this.data[t];this.ctx.fillStyle=Ui,this.ctx.fillRect(e+2,o,n-4,r);let a="#3CB173";if("default"===this.colorScheme)s<.5?a="#E74C3C":s<.75&&(a="#F39C12");else if("rainbow"===this.colorScheme)a=s<.2?"#E74C3C":s<.4?"#FF7F00":s<.6?"#FFFF00":s<.8?"#00FF00":"#0000FF";else if("heatmap"===this.colorScheme){const t=Math.round(255*s);a=`rgb(255, ${t}, ${t})`}const l=s*r;this.ctx.fillStyle=a,this.ctx.fillRect(e+2,o+r-l,n-4,l),this.ctx.strokeStyle=ji,this.ctx.lineWidth=1,this.ctx.strokeRect(e+2,o,n-4,r),n>20&&(this.ctx.fillStyle=Vi,this.ctx.font="9px monospace",this.ctx.textAlign="center",this.ctx.textBaseline="middle",this.ctx.fillText(`${Math.round(100*s)}%`,i,o+r/2))}}const Ki={TITLE_HEIGHT:16,TRACK_GAP:4,DOTTED_CELL_HEIGHT:30,SLIDER_HEIGHT:8,TOP_PADDING:5,DEFAULT_TRACK_HEIGHT:45,MIN_TRACK_HEIGHT:35},Zi={BASE:Ki.DOTTED_CELL_HEIGHT+Ki.SLIDER_HEIGHT,WITH_TITLE:function(){return this.BASE+Ki.TITLE_HEIGHT+Ki.TRACK_GAP},WITH_WEBLOGO:function(){return this.WITH_TITLE()+Ki.DEFAULT_TRACK_HEIGHT+Ki.TRACK_GAP},WITH_BOTH:function(){return this.WITH_WEBLOGO()+Ki.DEFAULT_TRACK_HEIGHT+Ki.TRACK_GAP}};class Xi{constructor(t){this.canvas=null,this.ctx=null,this.tracks=new Map,this.currentHoverPosition=-1,this.currentHoverTrack=null,this.currentHoverMonomer=null,this.previousHoverPosition=-1,this.previousHoverTrack=null,this.previousHoverMonomer=null,this.dataFrame=null,this.seqHandler=null,this.seqColumn=null,this.onSelectionCallback=null,this.trackButtons=[],this.userSelectedTracks=null,this.config={x:t.x||0,y:t.y||0,width:t.width||0,height:t.height||0,windowStartPosition:t.windowStartPosition||1,positionWidth:t.positionWidth||15,totalPositions:t.totalPositions||5e3,headerHeight:t.headerHeight||Zi.BASE,sliderHeight:t.sliderHeight||Ki.SLIDER_HEIGHT,currentPosition:t.currentPosition||1,cellBackground:void 0===t.cellBackground||t.cellBackground,sliderColor:t.sliderColor||"rgba(220, 220, 220, 0.4)",onPositionChange:t.onPositionChange||((t,e)=>{}),onHeaderHeightChange:t.onHeaderHeightChange||(()=>{}),...t},this.eventElement=s.div(),this.eventElement.style.position="absolute",this.config.canvas.parentElement?.appendChild(this.eventElement),this.state={isDragging:!1,dragStartX:0},this.setupEventListeners(),this.init()}determineVisibleTracks(){const t=this.config.headerHeight,e=this.getTrack("weblogo"),n=this.getTrack("conservation");if(this.tracks.forEach((t=>{t.setVisible(!1),t.setHeight(Ki.DEFAULT_TRACK_HEIGHT)})),!(t<Zi.WITH_TITLE()||t<Zi.WITH_WEBLOGO()))if(t<Zi.WITH_BOTH()){if(e){e.setVisible(!0);const n=t-Zi.WITH_WEBLOGO();e.setHeight(Ki.DEFAULT_TRACK_HEIGHT+n)}}else{if(e&&e.setVisible(!0),n&&n.setVisible(!0),e&&t>Zi.WITH_BOTH()){const n=t-Zi.WITH_BOTH();e.setHeight(Ki.DEFAULT_TRACK_HEIGHT+n)}this.userSelectedTracks&&(this.tracks.forEach(((t,e)=>{this.userSelectedTracks[e]||t.setVisible(!1)})),t<Zi.WITH_WEBLOGO()&&e&&e.setVisible(!1),t<Zi.WITH_BOTH()&&n&&n.setVisible(!1))}}drawTrackButtons(){if(!this.ctx||this.config.width<280)return;this.trackButtons=[];const t=this.getTrack("conservation"),e=this.getTrack("weblogo"),n=t?.isVisible()??!1,i=e?.isVisible()??!1;let o=this.config.width-16;const r=this.config.headerHeight>=Zi.WITH_TITLE()?(Ki.TITLE_HEIGHT-14)/2:2;n&&i||(!n&&t&&(o-=70,this.drawTrackButton("conservation","Conservation",o,r,70,14),o-=4),!i&&e&&(o-=70,this.drawTrackButton("weblogo","WebLogo",o,r,70,14)))}drawTrackButton(t,e,n,i,o,r,s=!1){this.ctx&&(this.trackButtons.push({id:t,label:e,x:n,y:i,width:o,height:r}),this.ctx.fillStyle=s?"rgba(100, 150, 200, 0.8)":"rgba(240, 240, 240, 0.8)",this.ctx.fillRect(n,i,o,r),this.ctx.strokeStyle=s?"rgba(70, 120, 170, 0.8)":"rgba(180, 180, 180, 0.8)",this.ctx.lineWidth=1,this.ctx.strokeRect(n,i,o,r),this.ctx.fillStyle=s?"#ffffff":"#666666",this.ctx.font="9px Roboto, Roboto Local",this.ctx.textAlign="center",this.ctx.textBaseline="middle",this.ctx.fillText(e,n+o/2,i+r/2))}handleTrackButtonClick(t,e){for(const n of this.trackButtons)if(t>=n.x&&t<=n.x+n.width&&e>=n.y&&e<=n.y+n.height)return this.snapToTrackHeight(n.id),!0;return!1}snapToTrackHeight(t){let e;if("weblogo"===t)e=Zi.WITH_WEBLOGO();else{if("conservation"!==t)return;e=Zi.WITH_BOTH()}this.userSelectedTracks||(this.userSelectedTracks={},this.tracks.forEach(((t,e)=>{this.userSelectedTracks[e]=!1}))),"conservation"===t?(this.userSelectedTracks.weblogo=!0,this.userSelectedTracks.conservation=!0):"weblogo"===t&&(this.userSelectedTracks.weblogo=!0),this.config.onHeaderHeightChange&&this.config.onHeaderHeightChange(e),window.requestAnimationFrame((()=>this.redraw()))}resetToAutoMode(){this.userSelectedTracks=null;const t=this.tracks.size>0?Zi.WITH_BOTH():Zi.BASE;this.config.onHeaderHeightChange&&this.config.onHeaderHeightChange(t),window.requestAnimationFrame((()=>this.redraw()))}drawColumnTitle(t,e,n,i){this.ctx&&i&&this.config.headerHeight>=Zi.WITH_TITLE()&&(this.ctx.fillStyle="rgba(255, 255, 255, 0.95)",this.ctx.fillRect(t,e,n,Ki.TITLE_HEIGHT),this.ctx.fillStyle=Vi,this.ctx.font="bold 13px Roboto, Roboto Local",this.ctx.textAlign="center",this.ctx.textBaseline="middle",this.ctx.fillText(i,t+n/2,e+Ki.TITLE_HEIGHT/2))}clearHoverStates(){(-1!==this.previousHoverPosition||null!==this.previousHoverTrack||null!==this.previousHoverMonomer)&&(this.previousHoverPosition=-1,this.previousHoverTrack=null,this.previousHoverMonomer=null,this.tracks.forEach((t=>{t instanceof zi&&t.setHovered(-1,null)})),window.requestAnimationFrame((()=>this.redraw())))}redraw(){this.draw(this.config.x,this.config.y,this.config.width,this.config.height,this.config.currentPosition,this.config.windowStartPosition,{preventDefault:()=>{}},this.seqColumn?.name)}setSelectionData(t,e,n,i){this.dataFrame=t,this.seqColumn=e,this.seqHandler=n,this.onSelectionCallback=i||null}setupTooltipHandling(){this.eventElement.addEventListener("mousemove",this.handleTooltipMouseMove.bind(this)),this.eventElement.addEventListener("mouseleave",this.handleTooltipMouseLeave.bind(this))}handleTooltipMouseMove(t){if(!this.isValid)return;const{x:e,y:n}=this.getCoords(t),i=this.config.positionWidth,o=Math.floor(e/i),r=this.config.windowStartPosition+o-1;if(r<0||r>=this.config.totalPositions)return this.hideTooltip(),void this.clearHoverStates();const a=this.config.headerHeight>=Zi.WITH_TITLE()?Ki.TITLE_HEIGHT:0,l=this.config.headerHeight-Ki.SLIDER_HEIGHT-Ki.DOTTED_CELL_HEIGHT,c=l-Ki.TRACK_GAP;if(n>=l||n<a)return this.hideTooltip(),void this.clearHoverStates();let h=null,u=0;const d=[],p=this.getTrack("weblogo");p&&p.isVisible()&&d.push({id:"weblogo",track:p});const m=this.getTrack("conservation");m&&m.isVisible()&&d.push({id:"conservation",track:m});let f=c;for(const{id:t,track:e}of d){const i=f-e.getHeight();if(n>=i&&n<f){h=t,u=n-i;break}f=i-Ki.TRACK_GAP}let g=null;if(h){const t=this.tracks.get(h);t&&(g=t.getMonomerAt(e,u,r))}if((this.previousHoverPosition!==r||this.previousHoverTrack!==h||this.previousHoverMonomer!==g)&&(this.previousHoverPosition=r,this.previousHoverTrack=h,this.previousHoverMonomer=g,h)){const t=this.tracks.get(h);t instanceof zi&&(t.setHovered(r,g),window.requestAnimationFrame((()=>this.redraw())))}if((r!==this.currentHoverPosition||h!==this.currentHoverTrack||g!==this.currentHoverMonomer)&&(this.currentHoverPosition=r,this.currentHoverTrack=h,this.currentHoverMonomer=g,h)){const e=this.tracks.get(h);if(e){const n=e.getTooltipContent(r,g);if(n)return void s.tooltip.show(n,t.clientX+16,t.clientY+16)}}h&&g||(this.hideTooltip(),this.clearHoverStates())}handleTooltipMouseLeave(){this.hideTooltip(),this.clearHoverStates(),window.requestAnimationFrame((()=>this.draw(this.config.x,this.config.y,this.config.width,this.config.height,this.config.currentPosition,this.config.windowStartPosition,{preventDefault:()=>{}},this.seqColumn?.name)))}hideTooltip(){this.currentHoverPosition=-1,this.currentHoverTrack=null,s.tooltip.hide()}draw(t,e,n,i,o,r,s,a){if(Object.assign(this.config,{x:t,y:e,width:n,height:i,currentPosition:o,windowStartPosition:r}),!this.isValid)return void(this.eventElement.style.display="none");this.ctx.save(),this.ctx.clearRect(t,e,n,i),this.ctx.translate(t,e),this.ctx.rect(0,0,n,i),this.ctx.clip(),this.determineVisibleTracks();const l=this.config.headerHeight>=Zi.WITH_TITLE();l&&Ki.TITLE_HEIGHT,a&&l&&this.drawColumnTitle(0,0,n,a);const c=i-Ki.SLIDER_HEIGHT,h=c-Ki.DOTTED_CELL_HEIGHT,u=h-Ki.TRACK_GAP,d=[],p=[],m=this.getTrack("weblogo");m&&m.isVisible()&&p.push({id:"weblogo",track:m});const f=this.getTrack("conservation");f&&f.isVisible()&&p.push({id:"conservation",track:f});let g=u;for(const{track:t}of p){const e=t.getHeight(),i=g-e;t.draw(0,i,n,e,this.config.windowStartPosition,this.config.positionWidth,this.config.totalPositions,this.config.currentPosition),d.unshift({y:i,height:e}),g=i-Ki.TRACK_GAP}if(this.drawDottedCells(0,h,n,Ki.DOTTED_CELL_HEIGHT,c),d.push({y:h,height:Ki.DOTTED_CELL_HEIGHT}),this.config.currentPosition>=1&&this.config.currentPosition<=this.config.totalPositions){const t=this.config.positionWidth,e=this.config.currentPosition-this.config.windowStartPosition;if(e>=0&&e<Math.floor(n/t)){const n=e*t+t/2;for(let t=0;t<d.length-1;t++){const e=d[t],i=d[t+1];this.ctx.strokeStyle="rgba(60, 177, 115, 0.4)",this.ctx.lineWidth=1,this.ctx.beginPath(),this.ctx.moveTo(n,e.y+e.height),this.ctx.lineTo(n,i.y),this.ctx.stroke()}}}this.drawTrackButtons(),this.ctx.restore(),s.preventDefault(),this.setupEventElement()}drawDottedCells(t,e,n,i,o){if(!this.ctx)return;const r=this.config.totalPositions,s=this.config.positionWidth,a=this.config.currentPosition,l=this.config.windowStartPosition,c=Math.floor(n/s),h=e+Ki.TOP_PADDING;this.drawSlider(t,o,n);for(let n=0;n<c;n++){const c=l+n;if(c>r)break;const u=t+n*s,d=s,p=u+d/2;this.config.cellBackground&&(this.ctx.fillStyle=n%2==0?"rgba(248, 248, 248, 0.3)":"rgba(242, 242, 242, 0.2)",this.ctx.fillRect(u,e,d,i),this.ctx.strokeStyle="rgba(220, 220, 220, 0.7)",this.ctx.beginPath(),this.ctx.moveTo(u,e),this.ctx.lineTo(u,o),this.ctx.stroke()),this.ctx.fillStyle="#999999",this.ctx.beginPath(),this.ctx.arc(p,h+5,1,0,2*Math.PI),this.ctx.fill(),(c===a||(1===c||c%10==0)&&Math.abs(c-a)>1)&&(this.ctx.fillStyle=Vi,this.ctx.font="12px monospace",this.ctx.textAlign="center",this.ctx.textBaseline="middle",this.ctx.fillText(c.toString(),p,h+15)),c===a&&(this.ctx.fillStyle="rgba(60, 177, 115, 0.2)",this.ctx.fillRect(u,e,d,i))}}drawSlider(t,e,n){if(!this.ctx)return;this.ctx.fillStyle=this.config.sliderColor,this.ctx.fillRect(t,e,n,Ki.SLIDER_HEIGHT);const i=Math.floor(n/this.config.positionWidth),o=this.config.windowStartPosition,r=this.config.totalPositions-i,s=this.sliderWidth,a=r<=0?0:(o-1)/r*(n-s),l=r<=0?n:s;if(this.ctx.fillStyle="rgba(150, 150, 150, 0.5)",this.ctx.fillRect(t+a,e,l,Ki.SLIDER_HEIGHT),this.config.currentPosition>=1&&this.config.currentPosition<=this.config.totalPositions){const i=(this.config.currentPosition-1)/(this.config.totalPositions-1),o=Math.round(i*n);this.ctx.fillStyle="#3CB173",this.ctx.fillRect(t+o-1,e-2,3,Ki.SLIDER_HEIGHT+4)}}setupEventElement(){this.eventElement.style.display="block",this.eventElement.style.left=`${this.config.x}px`,this.eventElement.style.top=`${this.config.y}px`,this.eventElement.style.width=`${this.config.width}px`,this.eventElement.style.height=`${this.config.height}px`}getCoords(t){const e=this.canvas.getBoundingClientRect();return{x:t.clientX-e.left-this.config.x,y:t.clientY-e.top-this.config.y}}isInHeaderArea(t){const{x:e,y:n}=this.getCoords(t);return e>=0&&e<=this.config.width&&n>=0&&n<=this.config.headerHeight}get positionWidth(){return this.config.positionWidth}set positionWidth(t){this.config.positionWidth=t}isInSliderArea(t){const{y:e}=this.getCoords(t),n=this.config.headerHeight-Ki.SLIDER_HEIGHT;return e>n&&e<n+Ki.SLIDER_HEIGHT}get sliderWidth(){const t=this.config.width/this.config.totalPositions*(this.config.width/this.config.positionWidth);return Math.max(t,20)}isInSliderDraggableArea(t){const{x:e,y:n}=this.getCoords(t),i=this.config.headerHeight-Ki.SLIDER_HEIGHT,o=Math.floor(this.config.width/this.config.positionWidth),r=this.config.windowStartPosition,s=this.config.totalPositions-o,a=s<=0?0:(r-1)/s*(this.config.width-this.sliderWidth);return n>i&&n<i+Ki.SLIDER_HEIGHT&&e>=a&&e<a+this.sliderWidth}setupEventListeners(){this.eventElement.addEventListener("mousemove",(t=>{this.isValid&&(this.isInSliderDraggableArea(t)?this.eventElement.style.cursor="grab":this.isInSliderArea(t)||this.isInHeaderArea(t)?this.eventElement.style.cursor="pointer":this.eventElement.style.cursor="default")})),this.eventElement.addEventListener("mousedown",this.handleMouseDown.bind(this)),this.eventElement.addEventListener("mousemove",this.handleMouseMove.bind(this)),this.eventElement.addEventListener("mouseup",this.handleMouseUp.bind(this)),this.eventElement.addEventListener("mouseleave",this.handleMouseUp.bind(this)),this.eventElement.addEventListener("click",this.handleSelectionClick.bind(this)),this.eventElement.addEventListener("click",this.handleClick.bind(this)),this.eventElement.addEventListener("wheel",this.handleMouseWheel.bind(this)),window.addEventListener("keydown",this.handleKeyDown.bind(this))}handleSelectionClick(t){if(!(this.isValid&&this.dataFrame&&this.seqColumn&&this.seqHandler))return;const{x:e,y:n}=this.getCoords(t);if(this.handleTrackButtonClick(e,n))return;const i=this.config.positionWidth,o=Math.floor(e/i),r=this.config.windowStartPosition+o-1;if(r<0||r>=this.config.totalPositions)return;const s=this.config.headerHeight>=Zi.WITH_TITLE()?Ki.TITLE_HEIGHT:0,a=this.config.headerHeight-Ki.SLIDER_HEIGHT-Ki.DOTTED_CELL_HEIGHT,l=a-Ki.TRACK_GAP;if(n>=a||n<s)return;let c=null,h=0;const u=[],d=this.getTrack("weblogo");d&&d.isVisible()&&u.push({id:"weblogo",track:d});const p=this.getTrack("conservation");p&&p.isVisible()&&u.push({id:"conservation",track:p});let m=l;for(const{id:t,track:e}of u){const i=m-e.getHeight();if(n>=i&&n<m){c=t,h=n-i;break}m=i-Ki.TRACK_GAP}if(c){const n=this.tracks.get(c);if(n){const i=n.getMonomerAt(e,h,r);if(i){if(this.onSelectionCallback)return void this.onSelectionCallback(r,i);this.selectRowsWithMonomerAtPosition(r,i),t.stopPropagation(),t.stopImmediatePropagation()}}}}selectRowsWithMonomerAtPosition(t,e){if(this.dataFrame&&this.seqHandler)try{const n=this.dataFrame.selection,i=this.seqHandler.getMonomersAtPosition(t,!0);n.init((t=>i[t]===e))}catch(t){console.error("Error selecting rows:",t)}}init(){if(this.canvas=this.config.canvas,!this.canvas)return void console.error("Canvas not found");const t=this.canvas.getContext("2d");t?(this.ctx=t,this.tracks.forEach((e=>e.init(t)))):console.error("Failed to get 2D context from canvas")}addTrack(t,e){this.ctx&&e.init(this.ctx),this.tracks.set(t,e)}removeTrack(t){this.tracks.delete(t)}getTrack(t){return this.tracks.get(t)}updateTrack(t,e){const n=this.getTrack(t);n&&e(n)}get isValid(){return!!this.canvas&&!!this.ctx&&this.config.height>=Zi.WITH_TITLE()}handleMouseDown(t){if(!this.isValid)return;const{x:e}=this.getCoords(t);this.isInSliderDraggableArea(t)&&(this.state.isDragging=!0,this.state.dragStartX=e,this.handleSliderDrag(e),t.preventDefault(),t.stopPropagation(),t.stopImmediatePropagation())}handleMouseWheel(t){if(this.isValid&&this.isInHeaderArea(t)){t.preventDefault(),t.stopPropagation(),t.stopImmediatePropagation();const e=t.shiftKey?Math.sign(t.deltaY):Math.sign(t.deltaX||t.deltaY),n=t.shiftKey?3:1,i=this.config.windowStartPosition+e*n,o=Math.floor(this.config.width/this.config.positionWidth),r=this.config.totalPositions-o+1;this.config.windowStartPosition=Math.max(1,Math.min(r,i)),"function"==typeof this.config.onPositionChange&&this.config.onPositionChange(this.config.currentPosition,this.getWindowRange())}}handleMouseMove(t){if(!this.state.isDragging||!this.isValid)return;const e=this.canvas.getBoundingClientRect(),n=t.clientX-e.left-this.config.x;this.handleSliderDrag(n),t.preventDefault(),t.stopPropagation(),t.stopImmediatePropagation()}handleKeyDown(t){if(this.isValid&&!(this.config.currentPosition<1)&&document.activeElement?.contains(this.eventElement)&&"block"===this.eventElement.style.display){if("ArrowLeft"===t.key||"ArrowRight"===t.key){t.preventDefault(),t.stopPropagation(),t.stopImmediatePropagation();const e="ArrowLeft"===t.key?-1:1,n=Math.min(Math.max(this.config.currentPosition+e,1),this.config.totalPositions);if(n===this.config.currentPosition)return;this.config.currentPosition=n;const i=Math.floor(this.config.width/this.config.positionWidth),o=this.config.windowStartPosition;(n<o||n>o+i-1)&&(this.config.windowStartPosition=e<0?n:Math.max(1,n-i+1))}else{if("Escape"!==t.key)return;this.config.currentPosition=-2,t.preventDefault(),t.stopPropagation(),t.stopImmediatePropagation()}"function"==typeof this.config.onPositionChange&&this.config.onPositionChange(this.config.currentPosition,this.getWindowRange())}}handleMouseUp(){this.state.isDragging=!1}handleSliderDrag(t){if(!this.isValid)return;const e=this.sliderWidth,n=this.config.width-e,i=Math.max(0,Math.min(this.config.width,t)),o=Math.floor(this.config.width/this.config.positionWidth),r=Math.floor(this.config.width/this.config.positionWidth),s=this.config.totalPositions-r,a=Math.max(0,i-e/2)/n*s;this.config.windowStartPosition=Math.max(1,Math.min(a,this.config.totalPositions-o+1)),"function"==typeof this.config.onPositionChange&&this.config.onPositionChange(this.config.currentPosition,this.getWindowRange())}get headerHeight(){return this.config.headerHeight}set headerHeight(t){this.config.headerHeight=t}handleClick(t){if(!this.isValid)return;t.clientX,this.canvas.getBoundingClientRect().left,t.clientY,this.canvas.getBoundingClientRect().top;const{x:e,y:n}=this.getCoords(t);if(this.handleTrackButtonClick(e,n))return t.preventDefault(),void t.stopPropagation();if(n<this.config.headerHeight-Ki.SLIDER_HEIGHT&&n>=0){const t=this.config.positionWidth,n=Math.round(e/t-.5),i=this.config.windowStartPosition+n;i>=1&&i<=this.config.totalPositions&&(this.config.currentPosition=i,"function"==typeof this.config.onPositionChange&&this.config.onPositionChange(this.config.currentPosition,this.getWindowRange()))}}getWindowRange(){return{start:this.config.windowStartPosition,end:Math.min(this.config.totalPositions,this.config.windowStartPosition+Math.floor(this.config.width/this.config.positionWidth))}}updateConfig(t){Object.assign(this.config,t),this.config.currentPosition=Math.min(this.config.currentPosition,this.config.totalPositions),"function"==typeof this.config.onPositionChange&&this.config.onPositionChange(this.config.currentPosition,this.getWindowRange())}getCurrentPosition(){return this.config.currentPosition}setCurrentPosition(t){this.config.currentPosition=Math.max(1,Math.min(this.config.totalPositions,t)),"function"==typeof this.config.onPositionChange&&this.config.onPositionChange(this.config.currentPosition,this.getWindowRange())}getHeightThresholds(){return{BASE:Zi.BASE,WITH_TITLE:Zi.WITH_TITLE(),WITH_WEBLOGO:Zi.WITH_WEBLOGO(),WITH_BOTH:Zi.WITH_BOTH()}}}class Ji{static conservationCache=new a.LruCache(100);static webLogoCache=new a.LruCache(100);static lastInvalidationTime=0;static CHUNK_SIZE=50;static clearAllCaches(){Ji.conservationCache=new a.LruCache(100),Ji.webLogoCache=new a.LruCache(100),Ji.lastInvalidationTime=Date.now()}static getLastInvalidationTime(){return Ji.lastInvalidationTime}static getChunkCacheKey(t,e,n){const i=t.dataFrame;return`${i.id}_${t.name}_f${i.filter.version}_${e}_${n}`}static getConservationChunk(t,e,n,i){return Ji.conservationCache.getOrCreate(i,(()=>{const o=Ji.getWebLogoChunk(t,e,n,i),r=new Array(n-e).fill(0);for(let i=e;i<n;i++){const n=o.get(i);if(!n||0===n.size)continue;let s=0,a=0;const l=t.defaultGapOriginal;for(const[t,e]of n.entries())t&&t!==l&&(s+=e,e>a&&(a=e));r[i-e]=s>0?a/s:0}return r}))}static getWebLogoChunk(t,e,n,i){return Ji.webLogoCache.getOrCreate(i,(()=>{const i=t.column.dataFrame,o=new Map,r=i.filter.trueCount;if(r<=1)return o;for(let t=e;t<n;t++)o.set(t,new Map);const s=i.filter,a=1/r;for(let i=-1;-1!==(i=s.findNext(i,!0));){const r=t.getSplitted(i).getOriginalRegion(e,n);if(0!==r.length)for(let t=0;t<r.length;t++){const n=r[t],i=o.get(e+t);i.set(n,(i.get(n)||0)+a)}}return o}))}static getConservationForViewport(t,e,n,i){const o=new Array(i).fill(0),r=Math.floor(e/Ji.CHUNK_SIZE)*Ji.CHUNK_SIZE,s=Math.ceil(n/Ji.CHUNK_SIZE)*Ji.CHUNK_SIZE;for(let e=r;e<s;e+=Ji.CHUNK_SIZE){const n=Math.min(e+Ji.CHUNK_SIZE,i),r=Ji.getChunkCacheKey(t.column,e,n),s=Ji.getConservationChunk(t,e,n,r);for(let t=0;t<s.length&&e+t<i;t++)o[e+t]=s[t]}return o}static getWebLogoForViewport(t,e,n,i){const o=new Map,r=Math.floor(e/Ji.CHUNK_SIZE)*Ji.CHUNK_SIZE,s=Math.ceil(n/Ji.CHUNK_SIZE)*Ji.CHUNK_SIZE;for(let e=r;e<s;e+=Ji.CHUNK_SIZE){const n=Math.min(e+Ji.CHUNK_SIZE,i),r=Ji.getChunkCacheKey(t.column,e,n),s=Ji.getWebLogoChunk(t,e,n,r);for(const[t,e]of s.entries())t<i&&o.set(t,e)}return o}}class Qi extends zi{seqHandler;maxLength;lastViewportStart=-1;lastViewportEnd=-1;lastInvalidationTime=0;forceNextUpdate=!1;constructor(t,e,n=45,i="WebLogo"){super(new Map,n,"",i),this.seqHandler=t,this.maxLength=e,this.visible=t.column.dataFrame.filter.trueCount>1}forceUpdate(){this.forceNextUpdate=!0}resetViewportTracking(){this.lastViewportStart=-1,this.lastViewportEnd=-1}updateForViewport(t,e){const n=Ji.getLastInvalidationTime(),i=n>this.lastInvalidationTime;if(!(Math.abs(this.lastViewportStart-t)>=10||Math.abs(this.lastViewportEnd-e)>=10||i||this.forceNextUpdate))return;this.forceNextUpdate=!1,this.lastViewportStart=t,this.lastViewportEnd=e,this.lastInvalidationTime=n;const o=Math.max(0,t-20),r=Math.min(this.maxLength,e+20),s=Ji.getWebLogoForViewport(this.seqHandler,o,r,this.maxLength);this.updateData(s)}draw(t,e,n,i,o,r,s,a){const l=Math.ceil(n/r)+2,c=Math.min(o+l,s);this.updateForViewport(o-1,c-1),super.draw(t,e,n,i,o,r,s,a)}}class to extends Yi{seqHandler;maxLength;lastViewportStart=-1;lastViewportEnd=-1;lastInvalidationTime=0;forceNextUpdate=!1;constructor(t,e,n=45,i="default",o="Conservation"){super([],n,i,o),this.seqHandler=t,this.maxLength=e,this.visible=t.column.dataFrame.filter.trueCount>1}forceUpdate(){this.forceNextUpdate=!0}resetViewportTracking(){this.lastViewportStart=-1,this.lastViewportEnd=-1}updateForViewport(t,e){const n=Ji.getLastInvalidationTime(),i=n>this.lastInvalidationTime;if(!(Math.abs(this.lastViewportStart-t)>=10||Math.abs(this.lastViewportEnd-e)>=10||i||this.forceNextUpdate))return;this.forceNextUpdate=!1,this.lastViewportStart=t,this.lastViewportEnd=e,this.lastInvalidationTime=n;const o=Math.max(0,t-20),r=Math.min(this.maxLength,e+20),s=Ji.getConservationForViewport(this.seqHandler,o,r,this.maxLength);this.updateData(s)}draw(t,e,n,i,o,r,s,a){const l=Math.ceil(n/r)+2,c=Math.min(o+l,s);this.updateForViewport(o-1,c-1),super.draw(t,e,n,i,o,r,s,a)}}const eo=new ai;async function no(){return await pn.getInstance()}class io{_palette;constructor(t){this._palette=t}get(t){return this._palette[t]}}let oo=null;async function ro(){null===oo&&(oo=async function(){const t="Bio: _package.initBio()";eo.logger.debug(`${t}, start`);const e=window.performance.now(),n=await(0,Pt.j)(),i=await eo.getProperties(),o=new si(i);eo.properties=o;const s=await pn.getInstance(),l=await(0,Nt.ub)();l.explicit&&(l.explicit=[],await(0,Nt.Eu)(l)),await s.awaitLoaded(1/0),s.initialLoadCompleted||await s.loadMonomerLib(),s.loadMonomerSets();const c=s.getMonomerLib(),u=s.getMonomerSets(),d=window.performance.now();eo.logger.debug(`${t}, loading ET: ${d-e} ms`);const p=new Bi(s,n);eo.completeInit(p,c,u,n),eo.logger.debug(`${t}, end`),function(){const t=t=>{setTimeout((()=>{if(t.isDetached)return;const e=t.dataFrame;if(!e)return;const n=e.columns.bySemTypeAll(a.SEMTYPE.MACROMOLECULE);for(const i of n){const n=eo.seqHelper.getSeqHandler(i);if(!n)continue;if(n.isHelm()||n.alphabet===gt.YI.UN)continue;const o=t.col(i.name);if(!o)continue;let s=!!t.tableView&&Array.from(t.tableView.viewers).some((t=>"Sequence Position Statistics"===t.type));const l=n.isMsa(),c=(t,e)=>Number.isNaN(t)?e:t,u=()=>c(Math.max(Number.parseInt(i.getTag(gt.gp.positionShift)??"0"),0),0)+1,d=()=>c(Number.parseInt(i.getTag(gt.gp.selectedPosition)??"-2"),-2),p=()=>kt.Jy.getFontSettings(i).fontWidth;let m=0,f=0;const g=i.categories;for(let t=0;t<g.length;t++){const e=g[t];e&&e.length>f&&(f=e.length,m=t)}const y=g[m],b=n.splitter(y),v=b?b.length:30,w={WITH_TITLE:58,WITH_WEBLOGO:107,WITH_BOTH:156};let C;C=i.length>1e5||v<50?w.WITH_TITLE:i.length>5e4?w.WITH_WEBLOGO:w.WITH_BOTH;let A=null,S=null;const x=a.debounce(h.merge(e.onFilterChanged,e.onDataChanged.pipe((0,R.filter)((t=>t?.args?.column===i)))),100).subscribe((()=>{Ji.clearAllCaches(),A&&(A.resetViewportTracking(),A.forceUpdate()),S&&(S.resetViewportTracking(),S.forceUpdate()),setTimeout((()=>{t.isDetached||t.invalidate()}),50)}));t.sub(x);const E=r=>{const c=[],h=new to(n,v,45,"default","Conservation");S=h,c.push({id:"conservation",track:h,priority:1});const m=new Qi(n,v,45,"WebLogo");A=m,r&&(m.setMonomerLib(r),m.setBiotype(n.defaultBiotype||"HELM_AA")),m.setupDefaultTooltip(),c.push({id:"weblogo",track:m,priority:2});const f=new Xi({canvas:t.overlay,headerHeight:C,totalPositions:v+1,onPositionChange:(e,n)=>{setTimeout((()=>{const o=u(),r=d();if(o!==n.start&&i.setTag(gt.gp.positionShift,(n.start-1).toString()),r!==e&&(i.setTag(gt.gp.selectedPosition,e.toString()),e>=0&&!s&&t.tableView)){s=!0;const e=t.tableView.addViewer("Sequence Position Statistics",{sequenceColumnName:i.name});t.tableView.dockManager.dock(e,a.DOCK_TYPE.DOWN,null,"Sequence Position Statistics",.4)}}))},onHeaderHeightChange:e=>{t.isDetached||e<w.WITH_TITLE||setTimeout((()=>t.props.colHeaderHeight=e))}});f.setupTooltipHandling(),c.forEach((({id:t,track:e})=>{f.addTrack(t,e)})),f.setSelectionData(e,i,n),v>50&&(t.props.colHeaderHeight=C,setTimeout((()=>{t.isDetached||(o.width=400)}),300)),t.sub(t.onCellRender.subscribe((t=>{const e=t.cell;if(!e||!e.isColHeader||e?.gridColumn?.name!==o?.name)return;const n=t.bounds;if(!n)return;f.headerHeight=n.height;const r=p();f.positionWidth=r+(l?8:0);const s=u(),a=l?0:4;f.draw(n.x+a,n.y,n.width-a,n.height,d(),s,t,i.name)})))};(0,bt.pj)().then((t=>{const e=t.getMonomerLib();E(e)})).catch((t=>{r.shell.warning("Failed to initialize monomer library"),console.error("Failed to initialize monomer library:",t)}))}}),1e3)},e=(r.events.onViewerAdded.subscribe((e=>{if(!(e.args&&e.args.viewer instanceof a.Grid))return;const n=e.args.viewer;t(n)})),r.shell.tableViews);for(const n of e){const e=n?.grid;e&&t(e)}}()}()),await oo}function so(t){const e=new ui(t,eo.seqHelper);return e.init().then((()=>{})).catch((t=>{const e=t instanceof Error?t.message:t.toString();r.shell.error(e)})),e}function ao(){return eo.monomerLib}function lo(t){return eo.seqHelper.getSeqHandler(t)}function co(t){const e="getRegionTopMenu",n=a.Func.find({package:eo.name,name:e});if(1!==n.length)throw new Error(`Package '${eo.name}' func '${e}' not found`);const i=n[0].prepare({table:t.dataFrame,sequence:t});return new fi(i,eo.seqHelper).widget()}async function ho(t){return async function(){const t=s.label("Manage monomer libraries");return fn()(t).addClass("d4-link-action"),t.onclick=async()=>await Vn(),new a.Widget(t)}()}function uo(t){try{new fi(t,eo.seqHelper).dialog()}catch(t){const e=t instanceof Error?t.message:t.toString(),n=t instanceof Error?t.stack:void 0;r.shell.error(`Get region editor error: ${e}`),eo.logger.error(e,void 0,n)}}function po(t){const e=new ei;s.dialog({title:"Split to Monomers"}).add(e.paramsUI).onOK((async()=>t.func.prepare(e.funcParams).call(!0))).show()}function mo(t){const e=new $({semtype:a.SEMTYPE.MACROMOLECULE}),n=s.dialog({title:"Sequence Space"}).add(e.getEditor()).onOK((async()=>{const n=e.getParams();return t.func.prepare({molecules:n.col,table:n.table,methodName:n.methodName,similarityMetric:n.similarityMetric,plotEmbeddings:n.plotEmbeddings,options:n.options,preprocessingFunction:n.preprocessingFunction,clusterEmbeddings:n.clusterEmbeddings}).call()}));n.history((()=>({editorSettings:e.getStringInput()})),(t=>e.applyStringInput(t.editorSettings))),n.show()}function fo(t){const e=new St({semtype:a.SEMTYPE.MACROMOLECULE}),n=s.dialog({title:"Activity Cliffs"}).add(e.getEditor()).onOK((async()=>{const n=e.getParams();return t.func.prepare({table:n.table,molecules:n.col,activities:n.activities,similarity:n.similarityThreshold,methodName:n.methodName,similarityMetric:n.similarityMetric,preprocessingFunction:n.preprocessingFunction,options:n.options}).call()}));n.history((()=>({editorSettings:e.getStringInput()})),(t=>e.applyStringInput(t.editorSettings))),n.show()}function go(){return new Yt}function yo(){return new Yt}function bo(){return new Yt}function vo(t){return function(t){const e=Array.from(t.dataFrame.columns).filter((t=>t.semType===a.SEMTYPE.MOLECULE)).map((t=>t.name));new Set(e).delete(t.name);let n=eo.properties?eo.properties.maxMonomerLength:4;if(Rt.gp.maxMonomerLength in t.tags){const e=parseInt(t.getTag(Rt.gp.maxMonomerLength));n=isNaN(e)?n:e}if(".mm.cellRenderer.maxMonomerLength"in t.temp){const e=parseInt(t.temp[".mm.cellRenderer.maxMonomerLength"]);n=isNaN(e)?n:e}const i=s.input.int("Max Monomer Length",{value:n,nullable:!0,min:1,max:50,step:1,onValueChanged:e=>{if(0==e)setTimeout((()=>{i.value=null}),0);else{const n=e??"",i=null==n?"":n.toString();t.temp[".mm.cellRenderer.maxMonomerLength"]=i,t.temp[".mm.cellRenderer.settingsChanged"]=Dt.s.true,t.dataFrame.fireValuesChanged()}},tooltipText:"The max length of monomer symbol displayed without shortening, empty to no limit"});let o=eo.properties?eo.properties.fontSize:12;".mm.cellRenderer.fontSize"in t.temp&&t.temp[".mm.cellRenderer.fontSize"]&&!isNaN(t.temp[".mm.cellRenderer.fontSize"])&&(o=t.temp[".mm.cellRenderer.fontSize"]);const r=s.input.int("Font Size",{value:o,nullable:!0,min:1,max:50,step:1,onValueChanged:e=>{if(e&&e>0){const n=e??12;t.temp[".mm.cellRenderer.fontSize"]=n,t.temp[".mm.cellRenderer.settingsChanged"]=Dt.s.true,t.dataFrame.fireValuesChanged()}},tooltipText:"The font size of monomer symbol in sequence renderer"}),l=s.input.int("Monomer Margin",{value:t.temp[".mm.cellRenderer.gapLength"]??0,onValueChanged:e=>{t.temp[".mm.cellRenderer.gapLength"]=e,t.temp[".mm.cellRenderer.settingsChanged"]=Dt.s.true,t.dataFrame.fireValuesChanged()},tooltipText:"The size of margin between monomers (in pixels)"}),c=s.input.bool("Color Code",{value:null==t?.temp["color-code"]||t.temp["color-code"],onValueChanged:e=>{t.temp["color-code"]=e,t.dataFrame.fireValuesChanged()},tooltipText:"Color code"}),h=s.input.string("Reference Sequence",{value:null!=t?.temp["reference-sequence"]?t?.temp["reference-sequence"]:"",nullable:!0,onValueChanged:e=>{t.temp["reference-sequence"]=e,t.dataFrame.fireValuesChanged()},tooltipText:"Reference sequence is not empty, then the sequence will be render \nas a difference from the reference sequence"}),u=s.input.bool("Compare with current",{value:null==t?.temp["compare-with-current"]||t.temp["compare-with-current"],onValueChanged:e=>{t.temp["compare-with-current"]=e,t.dataFrame.fireValuesChanged()},tooltipText:'When on, all sequences get rendered in the "diff" mode'}),d=s.inputs([r,i,l,h,c,u]);return new a.Widget(d)}(t)}function wo(t){return function(t,e,n){const i=s.div();i.classList.add("macromolecule-cell-comp-analysis-host");const o=t.cell.column.tags[gt.gp.alphabet],r=o===gt.YI.DNA||o===gt.YI.RNA?Ft.o.NUCLEOTIDE:Ft.o.AA,l={},c=n.getSeqHandler(t.cell.column),h=t.cell.rowIndex,u=c.getSplitted(h);ot().count(0).take(u.length).filter((t=>!u.isGap(t))).forEach((t=>{let e=u.getCanonical(t);r===Ft.o.NUCLEOTIDE&&c.isHelm()&&"("===e[1]&&")"===e[e.length-2]&&(e=e.substring(2,e.length-2));const n=l[e]||0;l[e]=n+1}));const d=(0,hi.F)(l,r,e);return Array.from(d.rows).forEach((t=>{const e=t.getElementsByClassName("macromolecule-cell-comp-analysis-bar")[0].style.backgroundColor;t.cells[0].style.color=e})),i.appendChild(d),new a.Widget(i)}(t,eo.monomerLib,eo.seqHelper)}function Co(){return new Zt}function Ao(t,e,n,i,o){const r=new he.$(i,o,n,e);return"Local alignment"==t?r.smithWaterman():r.needlemanWunsch()}function So(){return new oe.oP}function xo(){return new ce}function Eo(t,e,n,i){return di(t,e??null,n??null,i??null)}async function To(t,e,n,i,o){const s=di(e,n??null,i??null,o??null);e.dataFrame.columns.add(s),await r.data.detectSemanticTypes(e.dataFrame)}async function _o(t,e,n,i,o,h,u,d,p){if(t.name!==r.shell.tv.dataFrame.name)return void r.shell.error(`Table ${t.name} is not a current table view`);if(!(0,Xn.V)(e,"Activity Cliffs"))return;const m=Mt(t),f={units:e.meta.units,aligned:e.getTag(gt.gp.aligned),separator:e.getTag(gt.gp.separator),alphabet:e.getTag(gt.gp.alphabet)},g=h,y=e,b=async()=>await mt(t,y,m,"Activity cliffs",n,i,g,o,{...d??{}},a.SEMTYPE.MACROMOLECULE,f,u,me,fe,ve,void 0,p),v=o===c.c.UMAP?2e5:2e4,w=o===c.c.UMAP?5e3:2e3;if(t.rowCount>v)return void r.shell.warning(`Too many rows, maximum for sequence activity cliffs is ${v}`);const C=a.TaskBarProgressIndicator.create("Running sequence activity cliffs ...");return new Promise(((e,n)=>{t.rowCount>w&&!d?.[l.vb]?s.dialog().add(s.divText("Activity cliffs analysis might take several minutes.\n Do you want to continue?")).onOK((async()=>{b().then((t=>e(t))).catch((t=>n(t)))})).onCancel((()=>{e(void 0)})).show():b().then((t=>e(t))).catch((t=>n(t)))})).catch((t=>{const[e,n]=(0,Ct.AP)(t);throw eo.logger.error(e,void 0,n),t})).finally((()=>{C.close()}))}async function Mo(t,e,n=1,i=.6,o="Morgan"){if(t.semType!==a.SEMTYPE.MACROMOLECULE)return{entries:t.toList(),options:{}};const{seqList:r,options:s}=await de(t,e,o);return{entries:r,options:{...s,gapOpen:n,gapExtend:i}}}async function Io(t,e){t.version!==t.temp["last-invalidated-version"]&&await(0,pe.BQ)(t,eo.seqHelper,!1);const n=t.temp["monomeric-mols"],i=await r.functions.call("Chem:getMorganFingerprints",{molColumn:n}),o=new Array(i.length).fill(null);for(let t=0;t<i.length;t++){if(i.isNone(t)||!i.get(t))continue;const e=i.get(t);o[t]=V.A.fromUint32Array(e.length,new Uint32Array(e.getBuffer().buffer))}return{entries:o,options:{}}}async function Lo(t,e,i,o,c,h,u,d,p){if(t.name!==r.shell.tv.dataFrame.name)return void r.shell.error(`Table ${t.name} is not a current table view`);const m=r.shell.tv.dataFrame==t?r.shell.tv:void 0;return(0,Xn.V)(e,"Sequence Space")?(h||(h=a.Func.find({name:"macromoleculePreprocessingFunction",package:"Bio"})[0]),u??={},await async function(t,e,i,o,c,h,u,d=!0,p=!1,m={preprocessingFuncArgs:[]},f={},g=null,y={},b){const v={showXAxis:!1,showYAxis:!1,showXSelector:!1,showYSelector:!1};if(e.length!==o.length||e.length!==h.length||e.length!==c.length||e.length!==m.preprocessingFuncArgs.length)throw new Error("columns, metrics and preprocessing functions, weights and function argumentsmust have the same length");const w=d?f.tableView??r.shell.tableView(t.name)??r.shell.addTableView(t):null,C=async()=>{const C=a.TaskBarProgressIndicator.create(`Initializing ${f.scatterPlotName??"dimensionality reduction"} ...`);let A;try{const S=Mt(t);function x(n,o,r){let c=null,h=null;t.columns.names().includes(S[0])?(c=t.columns.byName(S[0]),h=t.columns.byName(S[1])):(c=t.columns.add(a.Column.float(S[0],t.rowCount)),h=t.columns.add(a.Column.float(S[1],t.rowCount)),d&&!A&&(A=w.scatterPlot({...v,x:S[0],y:S[1],title:f.scatterPlotName??It(e,i)}))),f[l.YP]&&(A?.root&&s.setUpdateIndicator(A.root,!1),c.init((t=>r[0]?r[0][t]:void 0)),h.init((t=>r[1]?r[1][t]:void 0)));const u=n/o*100;C.update(u,`Running ${f.scatterPlotName??"dimensionality reduction"}... ${u.toFixed(0)}%`)}async function E(){t.columns.add(a.Column.float(S[0],t.rowCount)),t.columns.add(a.Column.float(S[1],t.rowCount));let n=null;d&&(A=w.scatterPlot({...v,x:S[0],y:S[1],title:f.scatterPlotName??It(e,i)}),s.setUpdateIndicator(A.root,!0));const p=r.events.onViewerClosed.subscribe((t=>{const e=t.args.viewer;e?.getOptions()?.look?.title&&A?.getOptions()?.look?.title&&e?.getOptions()?.look?.title===A?.getOptions()?.look?.title&&(r.events.fireCustomEvent(q.S,{}),p.unsubscribe(),n?.(),C.close())})),g=new Promise((async(r,s)=>{try{n=r;const s=[];let a=o,d=c,p=u;if(b&&e.every((t=>t.isNumerical))){const n=e.map((t=>t.toList())),i=new Array(t.rowCount).fill(0).map(((t,n)=>new Float32Array(e.length)));for(let o=0;o<e.length;++o)for(let e=0;e<t.rowCount;++e)i[e][o]=n[o][e];m.distanceFnArgs=[{}],s.push({entries:i,options:{}}),a=[b],d=[1],p="MANHATTAN"}else for(let t=0;t<h.length;++t){const n=h[t];if(m.distanceFnArgs||(m.distanceFnArgs=[]),n){const i=n.inputs[0].name,r=n.inputs[1].name,{entries:a,options:l}=await n.apply({[i]:e[t],[r]:o[t],...m.preprocessingFuncArgs[t]??{}});s.push({entries:a,options:l}),m.distanceFnArgs.push(l)}else{const n=e[t].toList(),i={};s.push({entries:n,options:i}),m.distanceFnArgs.push(i)}}r(await Y(s.map((t=>t.entries)),i,a,d,u,m,f[l.vb]?void 0:x))}catch(t){s(t)}})),y=await g;return C.close(),p.unsubscribe(),y}const T=await E();if(p&&T){const _=a.TaskBarProgressIndicator.create("Clustering embeddings ...");try{const M=await function(t,e,i,o){return _t(this,void 0,void 0,(function*(){return new Promise((function(r,s){const a=new Worker(new URL(n.p+n.u(682),n.b));a.postMessage({embedX:t,embedY:e,minPts:o,epsilon:i}),a.onmessage=({data:{error:t,clusters:e}})=>{a.terminate(),t?s(t):r(e)}}))}))}(T[0],T[1],m.dbScanEpsilon??.01,m.dbScanMinPts??4),I=t.columns.getUnusedName("Cluster (DBSCAN)");t.columns.addNewString(I).init((t=>M[t].toString())),A&&(A.props.colorColumnName=I)}catch(L){r.shell.error("Clustering embeddings failed"),console.error(L)}finally{_.close()}}if(T){const N=t.columns.byName(S[0]),P=t.columns.byName(S[1]);if(N.init((t=>T[0][t])),P.init((t=>T[1][t])),g)try{const $=g.inputs[0].name,R=g.inputs[1].name;await g.prepare({[$]:N,[R]:P,...y}).call(!0)}catch(k){r.shell.error("Post-processing failed"),console.error(k)}if(A)return s.setUpdateIndicator(A.root,!1),A.helpUrl="/help/compute/sequence-space",A}}catch(O){r.shell.error("Dimensionality reduction failed"),console.error(O),C.close(),A&&s.setUpdateIndicator(A.root,!1)}};return new Promise((async(e,n)=>{try{if(f.fastRowCount&&t.rowCount>f.fastRowCount&&!f[l.vb])s.dialog().add(s.divText("Analysis might take several minutes. Do you want to continue?")).onOK((async()=>{try{const t=await C();e(t)}catch(t){n(t)}})).onCancel((()=>e(void 0))).show();else{const t=await C();e(t)}}catch(t){n(t)}}))}(t,[e],i,[o],[1],[h],"MANHATTAN",c,d??!1,{...u,preprocessingFuncArgs:[u.preprocessingFuncArgs??{}]},{fastRowCount:1e4,scatterPlotName:"Sequence space",bypassLargeDataWarning:u?.[l.vb],tableView:m})):void 0}async function No(t,e,n,i=!1){const o=a.TaskBarProgressIndicator.create("Converting to atomic level ...");try{await oo;const o=e.temp[".mm.cellRenderer.overriddenLibrary"]??eo.monomerLib,r=eo.seqHelper,s=eo.rdKitModule;await(0,gi.V)(t,e,n,i,o,r,s)}finally{o.close()}}async function Po(t){if(!t?.dataFrame)throw new Error("Sequence column is not found or its data frame is not empty");const e=a.Func.find({name:"toAtomicLevel",package:"Bio"})[0];if(!e)throw new Error("To Atomic level Function not found");e.prepare({table:t.dataFrame,seqCol:t}).edit()}async function $o(t){return async function(t){const e=s.divText(""),n=a.Widget.fromRoot(e);try{if(!t||!t.value)return e.innerText="No sequence provided",n;if(!(t.cell&&t.cell.dart&&t.cell.dataFrame&&t.cell.column))return e.innerText="Atomic level conversion requeires a sequence column",n;if(![gt.Hi.FASTA,gt.Hi.SEPARATOR,gt.Hi.HELM].includes(t.cell.column.meta.units?.toLowerCase()??""))return e.innerText="Unsupported sequence notation. please use Bio | Polytool | Convert",n;const i=(await Sr()).getSeqHandler(t.cell.column);if(!i)return e.innerText="No sequence handler found",n;if((i.getSplitted(t.cell.rowIndex,50)?.length??100)>40)return e.innerText="Maximum number of monomers is 40",n;const o=a.Column.fromStrings("singleVal",[t.value]),l=a.DataFrame.fromColumns([o]);if(Object.entries(t.cell.column.tags).forEach((([t,e])=>{o.setTag(t,e)})),await No(l,o,t.cell.column.meta.units===gt.Hi.HELM,!1),l.columns.length<2)return e.innerText="No structure generated",n;const c=l.columns.byIndex(1),h=c.get(0);if(!h)return e.innerText="No structure generated",n;c.semType=a.SEMTYPE.MOLECULE;const u=a.SemanticValue.fromTableCell(l.cell(0,c.name)),d=s.panels.infoPanel(u);let p=null;d&&(p=a.Widget.fromRoot(d.root));const m=r.chem.drawMolecule(h,300,300,!1);return m.style.cursor="pointer",s.tooltip.bind(m,"Click to expand"),m.onclick=()=>{const t=window.innerWidth-200,e=window.innerHeight-200,n=r.chem.drawMolecule(h,t,e,!1);s.dialog({title:"Molecule"}).add(n).showModal(!0)},p&&p.root.prepend(m),p??a.Widget.fromRoot(m)}catch(t){eo.logger.error(t)}return e.innerText="No Structure generated",n}(t)}function Ro(){(0,Qn.D)({},eo.seqHelper).catch((t=>{const[e,n]=(0,Ct.AP)(t);if(t instanceof Jn.Ap)return r.shell.warning(t.element),void eo.logger.warning(e);r.shell.error(e),eo.logger.error(e,void 0,n)}))}async function ko(t=null,e=null,n){return(0,Qn.D)({col:t,clustersCol:e,...n},eo.seqHelper)}async function Oo(){const t=r.shell.tv,e=t.dataFrame.columns.toList().filter((t=>t.semType==a.SEMTYPE.MACROMOLECULE&&(eo.seqHelper.getSeqHandler(t),!0))),n=async e=>{if(!(0,Xn.V)(e,"Composition"))return;const n=t.addViewer("WebLogo",{sequenceColumnName:e.name});r.shell.tv.dockManager.dock(n,a.DOCK_TYPE.DOWN,null,"Composition analysis",.25)};let i=null;if(0!=e.length){if(e.length>1){const t=e.map((t=>t.name)),i=e.find((t=>eo.seqHelper.getSeqHandler(t).isMsa())),o=s.input.choice("Column",{value:i?i.name:t[0],items:t});s.dialog({title:"Composition Analysis",helpUrl:"https://datagrok.ai/help/datagrok/solutions/domains/bio/#sequence-composition"}).add(s.div([o])).onOK((async()=>{const t=e.find((t=>t.name==o.value))??null;t&&await n(t)})).show()}else i=e[0];i&&await n(i)}else r.shell.error("Current table does not contain sequences")}function Ho(t){return new yt.m(t).importFasta()}function Go(t){return console.log(t),[]}function Fo(){const t=(0,$t.me)()[0];(0,_e.C)(t,eo.seqHelper)}function Do(t){(0,_e.C)(t,eo.seqHelper)}function Bo(){return new oi}async function Vo(t){const e=a.TaskBarProgressIndicator.create("Test detectMacromolecule..."),n=(await r.dapi.files.list(t,!0,"")).filter((t=>t.fileName.endsWith(".csv")));let i=0;const o=[];for(const s of n)try{const e=await r.dapi.files.readAsText(t+s.fullPath),n=a.DataFrame.fromCsv(e);for(const t of n.columns)await r.functions.call("Bio:detectMacromolecule",{col:t})===a.SEMTYPE.MACROMOLECULE&&o.push({file:s.path,result:"detected",column:t.name,message:`units: ${t.meta.units}`})}catch(t){o.push({file:s.path,result:"error",column:null,message:t instanceof Error?t.message:t.toString()})}finally{i+=1,e.update(100*i/n.length,`Test ${s.fileName}`)}r.shell.info("Test Demo:Files for detectMacromolecule finished."),e.close();const s=a.DataFrame.fromObjects(o);return s.name=`datasets_detectMacromolecule_${t}`,s}async function Wo(t,e){return await async function(t,e){if(await(0,te.cb)(10),!(0,Xn.V)(e,"Sequence space"))return t;const n=eo.seqHelper,i=(0,vt.R)(e,n);i.name="splitToMonomers";const o=e.dataFrame;for(const t of i.columns)t.semType=Wt.uF.MONOMER,t.setTag(wt.gp.alphabet,e.getTag(wt.gp.alphabet));const s=/(\d+)(?: \((\d+)\))?/,l=t=>{s.lastIndex=0;const e=t.match(s);return e?`${e[1]} (${parseInt(e[2]??"0")+1})`:t};for(let t=0;t<i.columns.length;t++){const n=i.columns.byIndex(t);n.semType=Wt.uF.MONOMER,n.setTag(wt.gp.alphabet,e.getTag(wt.gp.alphabet));const r=100;let s=0;for(;o.columns.byName(n.name)&&s<r;)n.name=l(n.name),s++;o.columns.add(n)}await r.data.detectSemanticTypes(o);for(let t=0;t<i.columns.length;t++){const e=i.columns.byIndex(t);e.setTag(a.TAGS.CELL_RENDERER,"Monomer"),e.setTag(".use-as-filter","false")}return o}(t,e)}function Uo(t){return eo.seqHelper.getSeqMonomers(t)}function jo(){return new Se(eo.seqHelper)}function qo(){const t=r.shell.v,e=t.addViewer("Sequence Similarity Search");t.dockManager.dock(e,"down")}function zo(){return new Ee(eo.seqHelper)}function Yo(){const t=r.shell.v,e=t.addViewer("Sequence Diversity Search");t.dockManager.dock(e,"down")}function Ko(t){const e=(0,$t.me)();1===e.length?t.func.prepare({macromolecules:e[0]}).call(!0):new pe.a7(e,eo.seqHelper)}function Zo(t){r.shell.tv.getFiltersGroup({createDefaultFilters:!1}).updateOrAdd({type:"Bio:bioSubstructureFilter",column:t.name,columnName:t.name}),r.shell.tv.grid.scrollToCell(t,0)}async function Xo(t,e,n){const i=eo.seqHelper;return yi(t,e,n,ft.IDENTITY,i)}async function Jo(t,e,n){const i=eo.seqHelper;return yi(t,e,n,ft.SIMILARITY,i)}async function Qo(){Vn()}async function tr(){await Wn()}async function er(){const t=await _n.getInstance();await t.getViewRoot()}async function nr(){return await Wn(!1)}async function ir(t,e){(await(await pn.getInstance()).getFileManager()).getValidLibraryPaths().forEach((e=>{const n=e.endsWith(".json")?e.substring(0,e.length-5):e;t.item(n).onSelected.subscribe((async()=>{const t=await _n.getInstance();await t.getViewRoot(e,!0),t.resetCurrentRowFollowing()}))}))}function or(){(0,Me.TE)()}function rr(){return new Ie._i(eo.seqHelper,eo.logger)}function sr(){return new Ie._i(eo.seqHelper,eo.logger)}async function ar(){const t=a.TaskBarProgressIndicator.create("WebLogo");try{const t=new URLSearchParams(window.location.search),e=new ti(t,"webLogoLargeApp"),n=await eo.files.readCsv("data/sample_PT_100000x5.csv");await r.data.detectSemanticTypes(n),await e.init(n)}finally{t.close()}}async function lr(){const t=a.TaskBarProgressIndicator.create("WebLogo ...");try{const t=new URLSearchParams(window.location.search),e=new ti(t,"webLogoAggApp"),n=await eo.files.readCsv("samples/FASTA_PT_activity.csv");await r.data.detectSemanticTypes(n),await e.init(n)}finally{t.close()}}async function cr(){const t=a.TaskBarProgressIndicator.create("getRegion ...");try{const t=new URLSearchParams(window.location.search),e=new mi(t,"getRegionApp");await e.init()}finally{t.close()}}async function hr(){const t=a.TaskBarProgressIndicator.create("getRegion ...");try{const t=new URLSearchParams(window.location.search),e=await eo.files.readCsv("samples/HELM_empty_vals.csv"),n=new mi(t,"getRegionHelmApp");await n.init({df:e,colName:"HELM"})}finally{t.close()}}function ur(){const t=a.DataFrame.fromColumns((0,Lt.dW)());r.shell.addTableView(t)}function dr(){const t=a.DataFrame.fromColumns([(0,Lt.Hx)(eo.seqHelper,gt.Hi.FASTA)]);r.shell.addTableView(t)}function pr(){const t=a.DataFrame.fromColumns([(0,Lt.Hx)(eo.seqHelper,gt.Hi.HELM)]);r.shell.addTableView(t)}function mr(t,e){!function(t,e,n){const i=n.getSeqHandler(t.column),o=Object.values(gt.Hi).filter((t=>t!==i.units));e.group("Copy").items(o,(e=>{const i=t.column,o=t.rowIndex,s=n.getSeqHandler(i),a=e===gt.Hi.SEPARATOR?eo.properties.defaultSeparator:void 0,l=s.getJoiner({notation:e,separator:a})(s.getSplitted(o));navigator.clipboard?(navigator.clipboard.writeText(l),r.shell.info(`Value of notation '${e}' copied to clipboard`)):r.shell.warning("The clipboard functionality requires a secure origin — either HTTPS or localhost")}))}(t,e,eo.seqHelper)}async function fr(){await async function(){const t=await eo.files.readCsv("samples/peptides-non-natural.csv");t.name="Similarity and Diversity Demo",t.col("activity").setTag("format","3 significant digits"),t.col("sequence").temp[".mm.cellRenderer.maxMonomerLength"]=4;const e=r.shell.addTableView(t);await t.meta.detectSemanticTypes(),await r.data.detectSemanticTypes(t);const n=e.addViewer("Sequence Similarity Search",{limit:20}),i=e.dockManager.dock(n,a.DOCK_TYPE.RIGHT,null,"Similarity search",.45);(0,$t.Kd)(e.grid,"sequence",500,30);const o=e.addViewer("Sequence Diversity Search",{limit:20});e.dockManager.dock(o,a.DOCK_TYPE.DOWN,i,"Diversity search",.4),r.functions.call("Dendrogram:HierarchicalClustering",{df:r.shell.t,colNameList:["sequence"],distance:"euclidian",linkage:"complete"})}()}async function gr(){await async function(){const t=await r.functions.eval("Bio:SeqSpaceDemo"),e=await r.dapi.projects.find(t.id);await e.open(),r.shell.windows.help.showHelp("/help/datagrok/solutions/domains/bio/bio.md#sequence-space")}()}async function yr(){await async function(){const t=await eo.files.readCsv("tests/helm_cyclic_cliffs.csv");t.name="Activity Cliffs Demo",await r.data.detectSemanticTypes(t),await t.meta.detectSemanticTypes();const e=r.shell.addTableView(t);s.setUpdateIndicator(e.root,!0);try{const n=a.Func.find({name:"macromoleculePreprocessingFunction",package:"Bio"})[0],i=await _o(t,t.getCol("Sequence"),t.getCol("Activity"),96,c.c.UMAP,ue.Z.MONOMER_CHEMICAL_DISTANCE,n,{},!0);e.dockManager.dock(i,a.DOCK_TYPE.RIGHT,null,"Activity Cliffs",.65),await a.delay(100),fn()(i.root).find("button.scatter_plot_link,cliffs_grid").get()[0].click(),await a.delay(100),e.grid.props.rowHeight=180,e.grid.col("sequence")&&(e.grid.col("sequence").width=300),e.grid.col("structure")&&(e.grid.col("structure").width=300);const o=Array.from(e.viewers).find((t=>t!==e.grid&&t.type===a.VIEWER.GRID));o&&(o.props.rowHeight=40,o.col("seq_diff").width=600,e.dockManager.dock(o,a.DOCK_TYPE.DOWN,null,"Cliffs",.35),e.dockManager.dock(i,a.DOCK_TYPE.RIGHT,null,"Activity Cliffs",.55))}catch(t){!function(t){const e=t instanceof Error?t.message:t.toString(),n=t instanceof Error?t.stack:void 0;r.shell.error(e),eo.logger.error(t.message,void 0,n)}(t)}finally{s.setUpdateIndicator(e.root,!1)}r.shell.windows.help.showHelp("/help/datagrok/solutions/domains/bio/bio.md#activity-cliffs")}()}async function br(){await async function(){const t=await eo.files.readCsv("samples/HELM_BI_CYCLIC.csv");t.name="To Atomic Level",await t.meta.detectSemanticTypes(),await r.data.detectSemanticTypes(t);const e=r.shell.addTableView(t),n=t.col("HELM");await No(t,n,!0,!1),(0,$t.Kd)(e.grid,"molfile(HELM)",500,300,!0),(0,$t.Kd)(e.grid,"HELM",500,void 0,!0),r.shell.info("Hover over monomers in HELM column to highlight them in molecular structure.",{timeout:10}),r.shell.windows.help.showHelp("/help/datagrok/solutions/domains/bio/bio.md#get-atomic-level-structure")}()}async function vr(t){const e=(0,bt.uX)(t),n=JSON.stringify(e);a.Utils.download(`${t.name}.json`,n)}async function wr(t,e){if(!t.trim())return"";try{const n=a.Column.fromList(a.COLUMN_TYPE.STRING,"helm",[t]),i=a.DataFrame.fromColumns([n]),o=await r.functions.call("Bio:detectMacromolecule",{col:n});o&&(n.semType=o);const s=(await no()).getMonomerLib(),l=eo.seqHelper,c=await(0,Pt.j)(),h=(await(0,gi.V)(i,n,e,!1,s,l,c))?.molCol?.get(0);return h??void 0}catch(t){const[e,n]=(0,Ct.AP)(t);throw eo.logger.error(e,void 0,n),t}}async function Cr(t,e){if(!t.trim())return null;try{const n=a.Column.fromList(a.COLUMN_TYPE.STRING,"seq",[t]),i=a.DataFrame.fromColumns([n]);if(!await r.functions.call("Bio:detectMacromolecule",{col:n}))throw new Error("Macromolecule required");return(await yi(i,n,e,ft.IDENTITY,eo.seqHelper)).get(0)}catch(t){const[e,n]=(0,Ct.AP)(t);throw eo.logger.error(e,void 0,n),t}}async function Ar(t,e,n){const i=await t.readAsString();await async function(t,e,n){const i=a.TaskBarProgressIndicator.create("detectMacromolecule probe ...");try{let o=0;const s=await r.functions.call("Bio:detectMacromoleculeEnableStore");let l=0;for(let c=0;c<n;++c){const h=a.DataFrame.fromCsv(t),u=e?h.getCol(e):h.columns.byIndex(0);await r.functions.call("Bio:detectMacromolecule",{col:u})!==a.SEMTYPE.MACROMOLECULE&&(++l,console.warn(`Reject reason: ${s.last.rejectReason}`));const d=c/n;d-o>=.1&&(o=d,i.update(100*d,`detectMacromolecule probe ${l}/${c}/${n} ...`),await(0,te.cb)(0))}l>0?r.shell.warning(`detectMacromolecule failed ${l} / ${n}`):r.shell.info(`detectMacromolecule success ${n}`)}finally{i.close()}}(i,e,n)}async function Sr(){return await ro(),eo.seqHelper}function xr(t,e,n){return async function(t,e,n=!0,i){const o=eo.seqHelper,r=(await o.getHelmToMolfileConverter(i)).convertToRdKitBeautifiedMolfileColumn(e,n,eo.rdKitModule,i);return r.semType=a.SEMTYPE.MOLECULE,r}(0,e,n,eo.monomerLib)}function Er(){return eo.logger.debug("Bio:test1() function"),{value:"value1"}}},6625:(t,e,n)=>{"use strict";n.d(e,{$:()=>r});class i{value;parentI;parentJ;constructor(){this.value=0,this.parentI=0,this.parentJ=0}}class o{seq1;seq2;score;constructor(t,e,n){this.seq1=t,this.seq2=e,this.score=n}}class r{seq1="";seq2="";gap=1;len1=0;len2=0;step=1;alignGrid=[];scores=[];dpGrid=[];connections={};BLOSUM45=[[5,-2,-1,-2,-1,-1,-1,0,-2,-1,-1,-1,-1,-2,-1,1,0,-2,-2,0,-1,-1,0,-5],[-2,7,0,-1,-3,1,0,-2,0,-3,-2,3,-1,-2,-2,-1,-1,-2,-1,-2,-1,0,-1,-5],[-1,0,6,2,-2,0,0,0,1,-2,-3,0,-2,-2,-2,1,0,-4,-2,-3,4,0,-1,-5],[-2,-1,2,7,-3,0,2,-1,0,-4,-3,0,-3,-4,-1,0,-1,-4,-2,-3,5,1,-1,-5],[-1,-3,-2,-3,12,-3,-3,-3,-3,-3,-2,-3,-2,-2,-4,-1,-1,-5,-3,-1,-2,-3,-2,-5],[-1,1,0,0,-3,6,2,-2,1,-2,-2,1,0,-4,-1,0,-1,-2,-1,-3,0,4,-1,-5],[-1,0,0,2,-3,2,6,-2,0,-3,-2,1,-2,-3,0,0,-1,-3,-2,-3,1,4,-1,-5],[0,-2,0,-1,-3,-2,-2,7,-2,-4,-3,-2,-2,-3,-2,0,-2,-2,-3,-3,-1,-2,-1,-5],[-2,0,1,0,-3,1,0,-2,10,-3,-2,-1,0,-2,-2,-1,-2,-3,2,-3,0,0,-1,-5],[-1,-3,-2,-4,-3,-2,-3,-4,-3,5,2,-3,2,0,-2,-2,-1,-2,0,3,-3,-3,-1,-5],[-1,-2,-3,-3,-2,-2,-2,-3,-2,2,5,-3,2,1,-3,-3,-1,-2,0,1,-3,-2,-1,-5],[-1,3,0,0,-3,1,1,-2,-1,-3,-3,5,-1,-3,-1,-1,-1,-2,-1,-2,0,1,-1,-5],[-1,-1,-2,-3,-2,0,-2,-2,0,2,2,-1,6,0,-2,-2,-1,-2,0,1,-2,-1,-1,-5],[-2,-2,-2,-4,-2,-4,-3,-3,-2,0,1,-3,0,8,-3,-2,-1,1,3,0,-3,-3,-1,-5],[-1,-2,-2,-1,-4,-1,0,-2,-2,-2,-3,-1,-2,-3,9,-1,-1,-3,-3,-3,-2,-1,-1,-5],[1,-1,1,0,-1,0,0,0,-1,-2,-3,-1,-2,-2,-1,4,2,-4,-2,-1,0,0,0,-5],[0,-1,0,-1,-1,-1,-1,-2,-2,-1,-1,-1,-1,-1,-1,2,5,-3,-1,0,0,-1,0,-5],[-2,-2,-4,-4,-5,-2,-3,-2,-3,-2,-2,-2,-2,1,-3,-4,-3,15,3,-3,-4,-2,-2,-5],[-2,-1,-2,-2,-3,-1,-2,-3,2,0,0,-1,0,3,-3,-2,-1,3,8,-1,-2,-2,-1,-5],[0,-2,-3,-3,-1,-3,-3,-3,-3,3,1,-2,1,0,-3,-1,0,-3,-1,5,-3,-3,-1,-5],[-1,-1,4,5,-2,0,1,-1,0,-3,-3,0,-2,-3,-2,0,0,-4,-2,-3,4,2,-1,-5],[-1,0,0,1,-3,4,4,-2,0,-3,-2,1,-1,-3,-1,0,-1,-2,-2,-3,2,4,-1,-5],[0,-1,-1,-1,-2,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,0,0,-2,-1,-1,-1,-1,-1,-5],[-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,1]];BLOSUM50=[[5,-2,-1,-2,-1,-1,-1,0,-2,-1,-2,-1,-1,-3,-1,1,0,-3,-2,0,-2,-1,-1,-5],[-2,7,-1,-2,-4,1,0,-3,0,-4,-3,3,-2,-3,-3,-1,-1,-3,-1,-3,-1,0,-1,-5],[-1,-1,7,2,-2,0,0,0,1,-3,-4,0,-2,-4,-2,1,0,-4,-2,-3,4,0,-1,-5],[-2,-2,2,8,-4,0,2,-1,-1,-4,-4,-1,-4,-5,-1,0,-1,-5,-3,-4,5,1,-1,-5],[-1,-4,-2,-4,13,-3,-3,-3,-3,-2,-2,-3,-2,-2,-4,-1,-1,-5,-3,-1,-3,-3,-2,-5],[-1,1,0,0,-3,7,2,-2,1,-3,-2,2,0,-4,-1,0,-1,-1,-1,-3,0,4,-1,-5],[-1,0,0,2,-3,2,6,-3,0,-4,-3,1,-2,-3,-1,-1,-1,-3,-2,-3,1,5,-1,-5],[0,-3,0,-1,-3,-2,-3,8,-2,-4,-4,-2,-3,-4,-2,0,-2,-3,-3,-4,-1,-2,-2,-5],[-2,0,1,-1,-3,1,0,-2,10,-4,-3,0,-1,-1,-2,-1,-2,-3,2,-4,0,0,-1,-5],[-1,-4,-3,-4,-2,-3,-4,-4,-4,5,2,-3,2,0,-3,-3,-1,-3,-1,4,-4,-3,-1,-5],[-2,-3,-4,-4,-2,-2,-3,-4,-3,2,5,-3,3,1,-4,-3,-1,-2,-1,1,-4,-3,-1,-5],[-1,3,0,-1,-3,2,1,-2,0,-3,-3,6,-2,-4,-1,0,-1,-3,-2,-3,0,1,-1,-5],[-1,-2,-2,-4,-2,0,-2,-3,-1,2,3,-2,7,0,-3,-2,-1,-1,0,1,-3,-1,-1,-5],[-3,-3,-4,-5,-2,-4,-3,-4,-1,0,1,-4,0,8,-4,-3,-2,1,4,-1,-4,-4,-2,-5],[-1,-3,-2,-1,-4,-1,-1,-2,-2,-3,-4,-1,-3,-4,10,-1,-1,-4,-3,-3,-2,-1,-2,-5],[1,-1,1,0,-1,0,-1,0,-1,-3,-3,0,-2,-3,-1,5,2,-4,-2,-2,0,0,-1,-5],[0,-1,0,-1,-1,-1,-1,-2,-2,-1,-1,-1,-1,-2,-1,2,5,-3,-2,0,0,-1,0,-5],[-3,-3,-4,-5,-5,-1,-3,-3,-3,-3,-2,-3,-1,1,-4,-4,-3,15,2,-3,-5,-2,-3,-5],[-2,-1,-2,-3,-3,-1,-2,-3,2,-1,-1,-2,0,4,-3,-2,-2,2,8,-1,-3,-2,-1,-5],[0,-3,-3,-4,-1,-3,-3,-4,-4,4,1,-3,1,-1,-3,-2,0,-3,-1,5,-4,-3,-1,-5],[-2,-1,4,5,-3,0,1,-1,0,-4,-4,0,-3,-4,-2,0,0,-5,-3,-4,5,2,-1,-5],[-1,0,0,1,-3,4,5,-2,0,-3,-3,1,-1,-4,-1,0,-1,-2,-2,-3,2,5,-1,-5],[-1,-1,-1,-1,-2,-1,-1,-2,-1,-1,-1,-1,-1,-2,-2,-1,0,-3,-1,-1,-1,-1,-1,-5],[-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,1]];BLOSUM62=[[4,-1,-2,-2,0,-1,-1,0,-2,-1,-1,-1,-1,-2,-1,1,0,-3,-2,0,-2,-1,0,-4],[-1,5,0,-2,-3,1,0,-2,0,-3,-2,2,-1,-3,-2,-1,-1,-3,-2,-3,-1,0,-1,-4],[-2,0,6,1,-3,0,0,0,1,-3,-3,0,-2,-3,-2,1,0,-4,-2,-3,3,0,-1,-4],[-2,-2,1,6,-3,0,2,-1,-1,-3,-4,-1,-3,-3,-1,0,-1,-4,-3,-3,4,1,-1,-4],[0,-3,-3,-3,9,-3,-4,-3,-3,-1,-1,-3,-1,-2,-3,-1,-1,-2,-2,-1,-3,-3,-2,-4],[-1,1,0,0,-3,5,2,-2,0,-3,-2,1,0,-3,-1,0,-1,-2,-1,-2,0,3,-1,-4],[-1,0,0,2,-4,2,5,-2,0,-3,-3,1,-2,-3,-1,0,-1,-3,-2,-2,1,4,-1,-4],[0,-2,0,-1,-3,-2,-2,6,-2,-4,-4,-2,-3,-3,-2,0,-2,-2,-3,-3,-1,-2,-1,-4],[-2,0,1,-1,-3,0,0,-2,8,-3,-3,-1,-2,-1,-2,-1,-2,-2,2,-3,0,0,-1,-4],[-1,-3,-3,-3,-1,-3,-3,-4,-3,4,2,-3,1,0,-3,-2,-1,-3,-1,3,-3,-3,-1,-4],[-1,-2,-3,-4,-1,-2,-3,-4,-3,2,4,-2,2,0,-3,-2,-1,-2,-1,1,-4,-3,-1,-4],[-1,2,0,-1,-3,1,1,-2,-1,-3,-2,5,-1,-3,-1,0,-1,-3,-2,-2,0,1,-1,-4],[-1,-1,-2,-3,-1,0,-2,-3,-2,1,2,-1,5,0,-2,-1,-1,-1,-1,1,-3,-1,-1,-4],[-2,-3,-3,-3,-2,-3,-3,-3,-1,0,0,-3,0,6,-4,-2,-2,1,3,-1,-3,-3,-1,-4],[-1,-2,-2,-1,-3,-1,-1,-2,-2,-3,-3,-1,-2,-4,7,-1,-1,-4,-3,-2,-2,-1,-2,-4],[1,-1,1,0,-1,0,0,0,-1,-2,-2,0,-1,-2,-1,4,1,-3,-2,-2,0,0,0,-4],[0,-1,0,-1,-1,-1,-1,-2,-2,-1,-1,-1,-1,-2,-1,1,5,-2,-2,0,-1,-1,0,-4],[-3,-3,-4,-4,-2,-2,-3,-2,-2,-3,-2,-3,-1,1,-4,-3,-2,11,2,-3,-4,-3,-2,-4],[-2,-2,-2,-3,-2,-1,-2,-3,2,-1,-1,-2,-1,3,-3,-2,-2,2,7,-1,-3,-2,-1,-4],[0,-3,-3,-3,-1,-2,-2,-3,-3,3,1,-2,1,-1,-2,-2,0,-3,-1,4,-3,-2,-1,-4],[-2,-1,3,4,-3,0,1,-1,0,-3,-4,0,-3,-3,-2,0,-1,-4,-3,-3,4,1,-1,-4],[-1,0,0,1,-3,3,4,-2,0,-3,-3,1,-1,-3,-1,0,-1,-3,-2,-2,1,4,-1,-4],[0,-1,-1,-1,-2,-1,-1,-1,-1,-1,-1,-1,-1,-1,-2,0,0,-2,-1,-1,-1,-1,-1,-4],[-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,1]];BLOSUM80=[[7,-3,-3,-3,-1,-2,-2,0,-3,-3,-3,-1,-2,-4,-1,2,0,-5,-4,-1,-3,-2,-1,-8],[-3,9,-1,-3,-6,1,-1,-4,0,-5,-4,3,-3,-5,-3,-2,-2,-5,-4,-4,-2,0,-2,-8],[-3,-1,9,2,-5,0,-1,-1,1,-6,-6,0,-4,-6,-4,1,0,-7,-4,-5,5,-1,-2,-8],[-3,-3,2,10,-7,-1,2,-3,-2,-7,-7,-2,-6,-6,-3,-1,-2,-8,-6,-6,6,1,-3,-8],[-1,-6,-5,-7,13,-5,-7,-6,-7,-2,-3,-6,-3,-4,-6,-2,-2,-5,-5,-2,-6,-7,-4,-8],[-2,1,0,-1,-5,9,3,-4,1,-5,-4,2,-1,-5,-3,-1,-1,-4,-3,-4,-1,5,-2,-8],[-2,-1,-1,2,-7,3,8,-4,0,-6,-6,1,-4,-6,-2,-1,-2,-6,-5,-4,1,6,-2,-8],[0,-4,-1,-3,-6,-4,-4,9,-4,-7,-7,-3,-5,-6,-5,-1,-3,-6,-6,-6,-2,-4,-3,-8],[-3,0,1,-2,-7,1,0,-4,12,-6,-5,-1,-4,-2,-4,-2,-3,-4,3,-5,-1,0,-2,-8],[-3,-5,-6,-7,-2,-5,-6,-7,-6,7,2,-5,2,-1,-5,-4,-2,-5,-3,4,-6,-6,-2,-8],[-3,-4,-6,-7,-3,-4,-6,-7,-5,2,6,-4,3,0,-5,-4,-3,-4,-2,1,-7,-5,-2,-8],[-1,3,0,-2,-6,2,1,-3,-1,-5,-4,8,-3,-5,-2,-1,-1,-6,-4,-4,-1,1,-2,-8],[-2,-3,-4,-6,-3,-1,-4,-5,-4,2,3,-3,9,0,-4,-3,-1,-3,-3,1,-5,-3,-2,-8],[-4,-5,-6,-6,-4,-5,-6,-6,-2,-1,0,-5,0,10,-6,-4,-4,0,4,-2,-6,-6,-3,-8],[-1,-3,-4,-3,-6,-3,-2,-5,-4,-5,-5,-2,-4,-6,12,-2,-3,-7,-6,-4,-4,-2,-3,-8],[2,-2,1,-1,-2,-1,-1,-1,-2,-4,-4,-1,-3,-4,-2,7,2,-6,-3,-3,0,-1,-1,-8],[0,-2,0,-2,-2,-1,-2,-3,-3,-2,-3,-1,-1,-4,-3,2,8,-5,-3,0,-1,-2,-1,-8],[-5,-5,-7,-8,-5,-4,-6,-6,-4,-5,-4,-6,-3,0,-7,-6,-5,16,3,-5,-8,-5,-5,-8],[-4,-4,-4,-6,-5,-3,-5,-6,3,-3,-2,-4,-3,4,-6,-3,-3,3,11,-3,-5,-4,-3,-8],[-1,-4,-5,-6,-2,-4,-4,-6,-5,4,1,-4,1,-2,-4,-3,0,-5,-3,7,-6,-4,-2,-8],[-3,-2,5,6,-6,-1,1,-2,-1,-6,-7,-1,-5,-6,-4,0,-1,-8,-5,-6,6,0,-3,-8],[-2,0,-1,1,-7,5,6,-4,0,-6,-5,1,-3,-6,-2,-1,-2,-5,-4,-4,0,6,-1,-8],[-1,-2,-2,-3,-4,-2,-2,-3,-2,-2,-2,-2,-2,-3,-3,-1,-1,-5,-3,-2,-3,-1,-2,-8],[-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,1]];BLOSUM90=[[5,-2,-2,-3,-1,-1,-1,0,-2,-2,-2,-1,-2,-3,-1,1,0,-4,-3,-1,-2,-1,-1,-6],[-2,6,-1,-3,-5,1,-1,-3,0,-4,-3,2,-2,-4,-3,-1,-2,-4,-3,-3,-2,0,-2,-6],[-2,-1,7,1,-4,0,-1,-1,0,-4,-4,0,-3,-4,-3,0,0,-5,-3,-4,4,-1,-2,-6],[-3,-3,1,7,-5,-1,1,-2,-2,-5,-5,-1,-4,-5,-3,-1,-2,-6,-4,-5,4,0,-2,-6],[-1,-5,-4,-5,9,-4,-6,-4,-5,-2,-2,-4,-2,-3,-4,-2,-2,-4,-4,-2,-4,-5,-3,-6],[-1,1,0,-1,-4,7,2,-3,1,-4,-3,1,0,-4,-2,-1,-1,-3,-3,-3,-1,4,-1,-6],[-1,-1,-1,1,-6,2,6,-3,-1,-4,-4,0,-3,-5,-2,-1,-1,-5,-4,-3,0,4,-2,-6],[0,-3,-1,-2,-4,-3,-3,6,-3,-5,-5,-2,-4,-5,-3,-1,-3,-4,-5,-5,-2,-3,-2,-6],[-2,0,0,-2,-5,1,-1,-3,8,-4,-4,-1,-3,-2,-3,-2,-2,-3,1,-4,-1,0,-2,-6],[-2,-4,-4,-5,-2,-4,-4,-5,-4,5,1,-4,1,-1,-4,-3,-1,-4,-2,3,-5,-4,-2,-6],[-2,-3,-4,-5,-2,-3,-4,-5,-4,1,5,-3,2,0,-4,-3,-2,-3,-2,0,-5,-4,-2,-6],[-1,2,0,-1,-4,1,0,-2,-1,-4,-3,6,-2,-4,-2,-1,-1,-5,-3,-3,-1,1,-1,-6],[-2,-2,-3,-4,-2,0,-3,-4,-3,1,2,-2,7,-1,-3,-2,-1,-2,-2,0,-4,-2,-1,-6],[-3,-4,-4,-5,-3,-4,-5,-5,-2,-1,0,-4,-1,7,-4,-3,-3,0,3,-2,-4,-4,-2,-6],[-1,-3,-3,-3,-4,-2,-2,-3,-3,-4,-4,-2,-3,-4,8,-2,-2,-5,-4,-3,-3,-2,-2,-6],[1,-1,0,-1,-2,-1,-1,-1,-2,-3,-3,-1,-2,-3,-2,5,1,-4,-3,-2,0,-1,-1,-6],[0,-2,0,-2,-2,-1,-1,-3,-2,-1,-2,-1,-1,-3,-2,1,6,-4,-2,-1,-1,-1,-1,-6],[-4,-4,-5,-6,-4,-3,-5,-4,-3,-4,-3,-5,-2,0,-5,-4,-4,11,2,-3,-6,-4,-3,-6],[-3,-3,-3,-4,-4,-3,-4,-5,1,-2,-2,-3,-2,3,-4,-3,-2,2,8,-3,-4,-3,-2,-6],[-1,-3,-4,-5,-2,-3,-3,-5,-4,3,0,-3,0,-2,-3,-2,-1,-3,-3,5,-4,-3,-2,-6],[-2,-2,4,4,-4,-1,0,-2,-1,-5,-5,-1,-4,-4,-3,0,-1,-6,-4,-4,4,0,-2,-6],[-1,0,-1,0,-5,4,4,-3,0,-4,-4,1,-2,-4,-2,-1,-1,-4,-3,-3,0,4,-1,-6],[-1,-2,-2,-2,-3,-1,-2,-2,-2,-2,-2,-1,-1,-2,-2,-1,-1,-3,-2,-2,-2,-1,-2,-6],[-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,1]];NUCLEOTIDES=[[1,-1,-1,-1],[-1,1,-1,-1],[-1,-1,1,-1],[-1,-1,-1,1]];PAM30=[[6,-7,-4,-3,-6,-4,-2,-2,-7,-5,-6,-7,-5,-8,-2,0,-1,-13,-8,-2,-3,-3,-3,-17],[-7,8,-6,-10,-8,-2,-9,-9,-2,-5,-8,0,-4,-9,-4,-3,-6,-2,-10,-8,-7,-4,-6,-17],[-4,-6,8,2,-11,-3,-2,-3,0,-5,-7,-1,-9,-9,-6,0,-2,-8,-4,-8,6,-3,-3,-17],[-3,-10,2,8,-14,-2,2,-3,-4,-7,-12,-4,-11,-15,-8,-4,-5,-15,-11,-8,6,1,-5,-17],[-6,-8,-11,-14,10,-14,-14,-9,-7,-6,-15,-14,-13,-13,-8,-3,-8,-15,-4,-6,-12,-14,-9,-17],[-4,-2,-3,-2,-14,8,1,-7,1,-8,-5,-3,-4,-13,-3,-5,-5,-13,-12,-7,-3,6,-5,-17],[-2,-9,-2,2,-14,1,8,-4,-5,-5,-9,-4,-7,-14,-5,-4,-6,-17,-8,-6,1,6,-5,-17],[-2,-9,-3,-3,-9,-7,-4,6,-9,-11,-10,-7,-8,-9,-6,-2,-6,-15,-14,-5,-3,-5,-5,-17],[-7,-2,0,-4,-7,1,-5,-9,9,-9,-6,-6,-10,-6,-4,-6,-7,-7,-3,-6,-1,-1,-5,-17],[-5,-5,-5,-7,-6,-8,-5,-11,-9,8,-1,-6,-1,-2,-8,-7,-2,-14,-6,2,-6,-6,-5,-17],[-6,-8,-7,-12,-15,-5,-9,-10,-6,-1,7,-8,1,-3,-7,-8,-7,-6,-7,-2,-9,-7,-6,-17],[-7,0,-1,-4,-14,-3,-4,-7,-6,-6,-8,7,-2,-14,-6,-4,-3,-12,-9,-9,-2,-4,-5,-17],[-5,-4,-9,-11,-13,-4,-7,-8,-10,-1,1,-2,11,-4,-8,-5,-4,-13,-11,-1,-10,-5,-5,-17],[-8,-9,-9,-15,-13,-13,-14,-9,-6,-2,-3,-14,-4,9,-10,-6,-9,-4,2,-8,-10,-13,-8,-17],[-2,-4,-6,-8,-8,-3,-5,-6,-4,-8,-7,-6,-8,-10,8,-2,-4,-14,-13,-6,-7,-4,-5,-17],[0,-3,0,-4,-3,-5,-4,-2,-6,-7,-8,-4,-5,-6,-2,6,0,-5,-7,-6,-1,-5,-3,-17],[-1,-6,-2,-5,-8,-5,-6,-6,-7,-2,-7,-3,-4,-9,-4,0,7,-13,-6,-3,-3,-6,-4,-17],[-13,-2,-8,-15,-15,-13,-17,-15,-7,-14,-6,-12,-13,-4,-14,-5,-13,13,-5,-15,-10,-14,-11,-17],[-8,-10,-4,-11,-4,-12,-8,-14,-3,-6,-7,-9,-11,2,-13,-7,-6,-5,10,-7,-6,-9,-7,-17],[-2,-8,-8,-8,-6,-7,-6,-5,-6,2,-2,-9,-1,-8,-6,-6,-3,-15,-7,7,-8,-6,-5,-17],[-3,-7,6,6,-12,-3,1,-3,-1,-6,-9,-2,-10,-10,-7,-1,-3,-10,-6,-8,6,0,-5,-17],[-3,-4,-3,1,-14,6,6,-5,-1,-6,-7,-4,-5,-13,-4,-5,-6,-14,-9,-6,0,6,-5,-17],[-3,-6,-3,-5,-9,-5,-5,-5,-5,-5,-6,-5,-5,-8,-5,-3,-4,-11,-7,-5,-5,-5,-5,-17],[-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,1]];PAM70=[[5,-4,-2,-1,-4,-2,-1,0,-4,-2,-4,-4,-3,-6,0,1,1,-9,-5,-1,-1,-1,-2,-11],[-4,8,-3,-6,-5,0,-5,-6,0,-3,-6,2,-2,-7,-2,-1,-4,0,-7,-5,-4,-2,-3,-11],[-2,-3,6,3,-7,-1,0,-1,1,-3,-5,0,-5,-6,-3,1,0,-6,-3,-5,5,-1,-2,-11],[-1,-6,3,6,-9,0,3,-1,-1,-5,-8,-2,-7,-10,-4,-1,-2,-10,-7,-5,5,2,-3,-11],[-4,-5,-7,-9,9,-9,-9,-6,-5,-4,-10,-9,-9,-8,-5,-1,-5,-11,-2,-4,-8,-9,-6,-11],[-2,0,-1,0,-9,7,2,-4,2,-5,-3,-1,-2,-9,-1,-3,-3,-8,-8,-4,-1,5,-2,-11],[-1,-5,0,3,-9,2,6,-2,-2,-4,-6,-2,-4,-9,-3,-2,-3,-11,-6,-4,2,5,-3,-11],[0,-6,-1,-1,-6,-4,-2,6,-6,-6,-7,-5,-6,-7,-3,0,-3,-10,-9,-3,-1,-3,-3,-11],[-4,0,1,-1,-5,2,-2,-6,8,-6,-4,-3,-6,-4,-2,-3,-4,-5,-1,-4,0,1,-3,-11],[-2,-3,-3,-5,-4,-5,-4,-6,-6,7,1,-4,1,0,-5,-4,-1,-9,-4,3,-4,-4,-3,-11],[-4,-6,-5,-8,-10,-3,-6,-7,-4,1,6,-5,2,-1,-5,-6,-4,-4,-4,0,-6,-4,-4,-11],[-4,2,0,-2,-9,-1,-2,-5,-3,-4,-5,6,0,-9,-4,-2,-1,-7,-7,-6,-1,-2,-3,-11],[-3,-2,-5,-7,-9,-2,-4,-6,-6,1,2,0,10,-2,-5,-3,-2,-8,-7,0,-6,-3,-3,-11],[-6,-7,-6,-10,-8,-9,-9,-7,-4,0,-1,-9,-2,8,-7,-4,-6,-2,4,-5,-7,-9,-5,-11],[0,-2,-3,-4,-5,-1,-3,-3,-2,-5,-5,-4,-5,-7,7,0,-2,-9,-9,-3,-4,-2,-3,-11],[1,-1,1,-1,-1,-3,-2,0,-3,-4,-6,-2,-3,-4,0,5,2,-3,-5,-3,0,-2,-1,-11],[1,-4,0,-2,-5,-3,-3,-3,-4,-1,-4,-1,-2,-6,-2,2,6,-8,-4,-1,-1,-3,-2,-11],[-9,0,-6,-10,-11,-8,-11,-10,-5,-9,-4,-7,-8,-2,-9,-3,-8,13,-3,-10,-7,-10,-7,-11],[-5,-7,-3,-7,-2,-8,-6,-9,-1,-4,-4,-7,-7,4,-9,-5,-4,-3,9,-5,-4,-7,-5,-11],[-1,-5,-5,-5,-4,-4,-4,-3,-4,3,0,-6,0,-5,-3,-3,-1,-10,-5,6,-5,-4,-2,-11],[-1,-4,5,5,-8,-1,2,-1,0,-4,-6,-1,-6,-7,-4,0,-1,-7,-4,-5,5,1,-2,-11],[-1,-2,-1,2,-9,5,5,-3,1,-4,-4,-2,-3,-9,-2,-2,-3,-10,-7,-4,1,5,-3,-11],[-2,-3,-2,-3,-6,-2,-3,-3,-3,-3,-4,-3,-3,-5,-3,-1,-2,-7,-5,-2,-2,-3,-3,-11],[-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,1]];PAM250=[[2,-2,0,0,-2,0,0,1,-1,-1,-2,-1,-1,-3,1,1,1,-6,-3,0,0,0,0,-8],[-2,6,0,-1,-4,1,-1,-3,2,-2,-3,3,0,-4,0,0,-1,2,-4,-2,-1,0,-1,-8],[0,0,2,2,-4,1,1,0,2,-2,-3,1,-2,-3,0,1,0,-4,-2,-2,2,1,0,-8],[0,-1,2,4,-5,2,3,1,1,-2,-4,0,-3,-6,-1,0,0,-7,-4,-2,3,3,-1,-8],[-2,-4,-4,-5,12,-5,-5,-3,-3,-2,-6,-5,-5,-4,-3,0,-2,-8,0,-2,-4,-5,-3,-8],[0,1,1,2,-5,4,2,-1,3,-2,-2,1,-1,-5,0,-1,-1,-5,-4,-2,1,3,-1,-8],[0,-1,1,3,-5,2,4,0,1,-2,-3,0,-2,-5,-1,0,0,-7,-4,-2,3,3,-1,-8],[1,-3,0,1,-3,-1,0,5,-2,-3,-4,-2,-3,-5,0,1,0,-7,-5,-1,0,0,-1,-8],[-1,2,2,1,-3,3,1,-2,6,-2,-2,0,-2,-2,0,-1,-1,-3,0,-2,1,2,-1,-8],[-1,-2,-2,-2,-2,-2,-2,-3,-2,5,2,-2,2,1,-2,-1,0,-5,-1,4,-2,-2,-1,-8],[-2,-3,-3,-4,-6,-2,-3,-4,-2,2,6,-3,4,2,-3,-3,-2,-2,-1,2,-3,-3,-1,-8],[-1,3,1,0,-5,1,0,-2,0,-2,-3,5,0,-5,-1,0,0,-3,-4,-2,1,0,-1,-8],[-1,0,-2,-3,-5,-1,-2,-3,-2,2,4,0,6,0,-2,-2,-1,-4,-2,2,-2,-2,-1,-8],[-3,-4,-3,-6,-4,-5,-5,-5,-2,1,2,-5,0,9,-5,-3,-3,0,7,-1,-4,-5,-2,-8],[1,0,0,-1,-3,0,-1,0,0,-2,-3,-1,-2,-5,6,1,0,-6,-5,-1,-1,0,-1,-8],[1,0,1,0,0,-1,0,1,-1,-1,-3,0,-2,-3,1,2,1,-2,-3,-1,0,0,0,-8],[1,-1,0,0,-2,-1,0,0,-1,0,-2,0,-1,-3,0,1,3,-5,-3,0,0,-1,0,-8],[-6,2,-4,-7,-8,-5,-7,-7,-3,-5,-2,-3,-4,0,-6,-2,-5,17,0,-6,-5,-6,-4,-8],[-3,-4,-2,-4,0,-4,-4,-5,0,-1,-1,-4,-2,7,-5,-3,-3,0,10,-2,-3,-4,-2,-8],[0,-2,-2,-2,-2,-2,-2,-1,-2,4,2,-2,2,-1,-1,-1,0,-6,-2,4,-2,-2,-1,-8],[0,-1,2,3,-4,1,3,0,1,-2,-3,1,-2,-4,-1,0,0,-5,-3,-2,3,2,-1,-8],[0,0,1,3,-5,3,3,0,2,-2,-3,0,-2,-5,0,0,-1,-6,-4,-2,2,3,-1,-8],[0,-1,0,-1,-3,-1,-1,-1,-1,-1,-1,-1,-1,-2,-1,0,0,-4,-2,-1,-1,-1,-1,-8],[-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,1]];SCHNEIDER=[[11.6,-2.7,9.7,-1.7,-2.7,-6.4,-3.9,-5.6,5.1,-5,3.6,-4.2,-6.3,-13,-7.1,-11.5,.4,-6,-1.9,-5.3,-8.5,-11.2,-8.9,-10.8,2.1,0,1.4,.2,-10.2,-13.5,-13,-12.5,-2.6,-8.5,-5,-8.1,-6.3,-9.9,-7.5,-9,-7.1,-10.2,-8.2,-9.2,-8.2,-12.5,-11.1,-11.4,-50,-14.8,-50,-13.8,-7.3,-10.1,-8.4,-9.1,-50,-13,-13.5,-12.4,-10.7,-18.1,-11.8,-17.2],[-2.7,13,-3.3,10.9,-3.5,-.4,-3.3,-1.8,-5.4,4.6,-5.5,3,-10.2,-7.9,-9.9,-9.6,-5,.5,-5.5,-1,-10.3,-8.1,-9.4,-9.6,-8.1,-5,-7.3,-6.3,-13.4,-11.3,-14.4,-12.9,-6.3,.8,-6.4,-1.1,-7.4,-5,-6.2,-6.5,-5.6,-1.6,-4.7,-3,-10.8,-8.7,-11.9,-10,-50,-6.2,-50,-7.5,-6.3,-4.3,-6.2,-5.4,-50,-7,-16.3,-8.2,-13.2,-12.3,-13.1,-13.3],[9.7,-3.3,11.6,-2.8,-4.5,-6.7,-3.1,-6.9,3.3,-5.5,4.8,-5.1,-8.9,-13.2,-5.7,-12.6,-1.5,-6.1,-.6,-6.1,-10,-11.8,-8.6,-11.9,1.2,.5,2.2,.1,-11.8,-14,-11.9,-13.4,-4.9,-9.1,-3.4,-8.9,-8,-10,-7.2,-10,-9.1,-10.2,-7.1,-9.9,-10.1,-13,-10.6,-12.7,-50,-14.9,-50,-14.4,-8.9,-10.8,-8.9,-10.4,-50,-13.1,-11.8,-13,-12.4,-19.4,-11.5,-17.8],[-1.7,10.9,-2.8,12.9,-2.7,-2.2,-2.8,.2,-4.8,2.9,-5.2,5.2,-9.1,-9.5,-9,-7,-4,-1,-5,1,-9,-8.8,-8.9,-7.7,-7,-6.8,-7.1,-4.3,-12.4,-12.9,-13.9,-10,-4.9,-.7,-5.6,1.4,-6,-6.5,-6.2,-4.8,-5.1,-3.2,-5,-1.2,-9.8,-9.9,-11.3,-8.2,-50,-7.6,-50,-5.1,-5.5,-5.8,-5.9,-4.2,-50,-8.3,-15.5,-5.9,-11.6,-14.2,-12,-11.6],[-2.7,-3.5,-4.5,-2.7,11.7,9,10.6,9.6,-3.2,-.7,-5.1,-.4,.7,-4.6,-.4,-3.6,-4.8,-8.9,-6.5,-7.8,-1.4,-4.1,-2.9,-3.3,-8,-9.1,-8,-8.2,-6,-9.3,-7.7,-8.5,-6.4,-10.1,-7.5,-8.6,2.8,-.7,.9,.1,-5.9,-7.3,-6.5,-6.5,-.4,-3.9,-2.6,-3.1,-50,-14.6,-50,-12.6,2.9,.1,1.8,1,-50,-9.2,-13.6,-7.7,-4.8,-12.2,-6.2,-11],[-6.4,-.4,-6.7,-2.2,9,12.3,9.8,9.6,-7.1,2.4,-7.2,.3,-2.9,-1.2,-3,-3.3,-7.6,-6.7,-8.1,-7.9,-4.9,-1.9,-4.5,-3.8,-9.5,-7.8,-9.3,-8.9,-9.4,-7.1,-9,-9,-9.4,-7.5,-9.3,-9.2,-.7,2.6,.2,-.1,-8,-4.6,-7.7,-6.1,-3.6,-1,-4.1,-3.1,-50,-11.6,-50,-11.6,.2,2.3,.4,.5,-50,-6.5,-15.3,-7.8,-8.4,-9.5,-8.3,-11.1],[-3.9,-3.3,-3.1,-2.8,10.6,9.8,12.2,9.8,-4.9,.1,-3.6,-.2,-1.7,-4.1,.9,-3.5,-5.9,-8.9,-5.6,-8.5,-3.9,-3.9,-2.2,-4.5,-7.3,-7.5,-6.4,-8.5,-7.1,-8.2,-6.7,-7.8,-7.9,-9.1,-7.1,-9.4,.9,-.2,2.5,-.3,-6.9,-6.5,-5.5,-6.8,-1.7,-3.4,-1.7,-2.8,-50,-13,-50,-11.5,1.5,.7,2.7,.6,-50,-8.9,-12.1,-7.4,-6.1,-11.5,-5.4,-10.4],[-5.6,-1.8,-6.9,.2,9.6,9.6,9.8,11.6,-6.6,.9,-7.2,2.5,-2.3,-3.4,-2.3,-.6,-6.5,-8.2,-8,-6.3,-3.7,-3.5,-3.9,-1.6,-9.9,-8.9,-9.6,-7,-8.6,-8.9,-8.8,-6.8,-8.6,-8.2,-8.8,-6.8,.3,.1,.2,2.4,-7.4,-6.2,-6.9,-4.4,-2.9,-2.9,-3.5,-.9,-50,-12.2,-50,-10.1,1.2,.6,1.2,2.4,-50,-7.6,-16.1,-5.8,-7.2,-10.8,-7.4,-9],[5.1,-5.4,3.3,-4.8,-3.2,-7.1,-4.9,-6.6,13.3,-2.8,11.2,-1.9,-5.7,-12.5,-7.2,-11.6,-.7,-4.8,-3.1,-4.3,-10,-11.6,-8.8,-11.7,10.5,7.7,9.1,8.5,-9.8,-12.7,-11.7,-11.8,-6.3,-11.4,-8.8,-11,-7.5,-10.3,-8.3,-9.9,-1.9,-6.7,-4.1,-6.4,-7.9,-12.5,-11.4,-11.7,-50,-14,-50,-13.2,-8.5,-10.4,-9.1,-9.6,-50,-9.8,-7.7,-8.8,-10.3,-17.9,-11.8,-16],[-5,4.6,-5.5,2.9,-.7,2.4,.1,.9,-2.8,12.8,-2.6,11,-8.4,-6.3,-8.3,-7.7,-6.1,-2.9,-6.5,-4.2,-8.5,-5.9,-7.5,-7.7,-5.5,-2.4,-5.5,-4.1,-12.9,-10.3,-12.7,-11.3,-7.4,-3.1,-7.4,-4.9,-4.4,-1.8,-3.5,-3.5,-1.6,3,-.8,.9,-8.4,-6.3,-9.6,-7.3,-50,-9,-50,-9.7,-2.3,-.2,-1.2,-1.5,-50,-.7,-13.3,-2,-11.8,-11.9,-12.3,-12.7],[3.6,-5.5,4.8,-5.2,-5.1,-7.2,-3.6,-7.2,11.2,-2.6,13.4,-2.1,-7.7,-12.5,-5.3,-11.9,-2.2,-4.4,-1.9,-4.8,-10.2,-11.5,-8.1,-12,9.3,8.2,10,8,-10.8,-11.9,-10.7,-12.4,-8.2,-11.8,-6.9,-11.5,-8.4,-9.9,-7.1,-10.6,-4.7,-6.8,-1.2,-7,-9.8,-11.6,-9.6,-12.1,-50,-14.1,-50,-12.7,-10,-10.8,-8.8,-10.5,-50,-9.2,-4.2,-9.3,-11,-18.2,-11.1,-16.1],[-4.2,3,-5.1,5.2,-.4,.3,-.2,2.5,-1.9,11,-2.1,13.2,-7.6,-8.5,-8,-5.3,-5.6,-4.5,-6.8,-2.4,-7.8,-7.9,-7.9,-6.2,-5.7,-5.1,-5.4,-2.1,-12.4,-12.3,-13.1,-10.1,-6.6,-4.4,-6.9,-2.6,-3.6,-3.8,-3.7,-2,-1.4,.8,-.9,3,-8.2,-8.1,-9.2,-5.8,-50,-10.1,-50,-7.4,-1.7,-2,-1.5,-.5,-50,-2.1,-12.6,-.4,-11.6,-13.9,-11.4,-11.1],[-6.3,-10.2,-8.9,-9.1,.7,-2.9,-1.7,-2.3,-5.7,-8.4,-7.7,-7.6,13.2,9.6,3.5,9.7,-8.7,-12.4,-10.7,-10.7,-7.8,-10.2,-8.8,-9.6,-9.5,-11.9,-10.9,-10.5,2.3,-.4,-.2,-.3,-9.7,-15.5,-11.4,-13.7,-3,-6.4,-4.1,-5.4,-9.6,-11.9,-10.5,-11.8,6.2,3.3,3.7,3.6,-50,-13.6,-50,-11.9,-5.6,-8.8,-7.2,-8.9,-50,-12.4,-14.1,-11.6,2.8,-6.4,.5,-5.2],[-13,-7.9,-13.2,-9.5,-4.6,-1.2,-4.1,-3.4,-12.5,-6.3,-12.5,-8.5,9.6,12.7,.2,10.5,-12.4,-11.6,-13.2,-12,-12.4,-10.1,-11.6,-12,-15.1,-13.1,-14.3,-13.4,-1.4,1.4,-1.6,-.5,-14.9,-14.3,-15.2,-16.8,-7.7,-4.7,-6.3,-6.6,-14.6,-10.8,-12.8,-13,2.3,6,2.5,3.6,-50,-11.2,-50,-11.9,-10.5,-9.2,-10.5,-10.5,-50,-10.3,-16.2,-11.3,-1.7,-3.7,-2.5,-5.4],[-7.1,-9.9,-5.7,-9,-.4,-3,.9,-2.3,-7.2,-8.3,-5.3,-8,3.5,.2,14.3,1,-7.3,-11.2,-6.9,-9.7,-8.5,-10.2,-7.7,-9.8,-10,-10.4,-8.4,-10.2,1,-.6,1.7,-.5,-11.1,-14.8,-9.7,-14.5,-3.7,-5.8,-3.1,-5.6,-10.4,-11.5,-8.2,-11.1,.6,-1.6,1.6,-1.1,-50,-12.4,-50,-11.5,-5.5,-8,-4.9,-7.2,-50,-12.4,-10.3,-11.6,.7,-6.8,2.4,-6],[-11.5,-9.6,-12.6,-7,-3.6,-3.3,-3.5,-.6,-11.6,-7.7,-11.9,-5.3,9.7,10.5,1,12.6,-12,-12.2,-12.5,-9.7,-11.1,-11.2,-11.9,-9.4,-12.9,-14.3,-14,-11.9,-1,-.4,-1.6,1.2,-13.9,-15.4,-13.7,-12.6,-6.2,-6.7,-6.3,-4.4,-13,-12.2,-13,-10.4,2.9,3.8,2.5,5.8,-50,-12.5,-50,-10.2,-9.6,-9.7,-9.6,-8.3,-50,-11.6,-15.4,-9.4,-1.1,-5.4,-1.6,-3.3],[.4,-5,-1.5,-4,-4.8,-7.6,-5.9,-6.5,-.7,-6.1,-2.2,-5.6,-8.7,-12.4,-7.3,-12,12.8,2.3,10.2,3,0,-3.4,-.7,-3.2,2.5,-.8,.9,.2,-3,-7.2,-5.7,-6.1,-.2,-6.6,-1.8,-6,-5.3,-8.2,-5.7,-7.6,-6.7,-9.6,-7.5,-9.3,-7.1,-10.5,-9.6,-9.4,-50,-8.1,-50,-7.2,-4.3,-6.8,-5.7,-6.3,-50,-9.5,-9.6,-8.9,-6.2,-12.8,-6.8,-11.8],[-6,.5,-6.1,-1,-8.9,-6.7,-8.9,-8.2,-4.8,-2.9,-4.4,-4.5,-12.4,-11.6,-11.2,-12.2,2.3,14.6,1.9,12.9,-5.5,-2.6,-4.1,-4.7,-1.2,3,-1.1,1.6,-8,-4.7,-8.7,-6,-8.2,-4.7,-7.8,-6.7,-10,-8.3,-8.9,-9.9,-10.8,-7.1,-10,-9.2,-11.6,-10.1,-12.3,-11.9,-50,2.2,-50,.9,-7.9,-5.9,-7.4,-6.9,-50,-4.6,-11.6,-5.6,-9.7,-5.9,-9.9,-7.3],[-1.9,-5.5,-.6,-5,-6.5,-8.1,-5.6,-8,-3.1,-6.5,-1.9,-6.8,-10.7,-13.2,-6.9,-12.5,10.2,1.9,11.9,2.1,-2.3,-4.1,-.5,-4.6,-.1,-.9,2.4,-.8,-5.1,-6.9,-4.8,-6.7,-2.3,-7.1,-.8,-7.2,-7.2,-8,-5.6,-8.5,-9.4,-9.7,-7.2,-9.8,-9.2,-11.1,-9.5,-10.7,-50,-8.7,-50,-8.6,-6.1,-7.5,-5.5,-7.7,-50,-10.4,-7.7,-10,-7.3,-13.6,-6.4,-13.3],[-5.3,-1,-6.1,1,-7.8,-7.9,-8.5,-6.3,-4.3,-4.2,-4.8,-2.4,-10.7,-12,-9.7,-9.7,3,12.9,2.1,14.7,-4.9,-3.8,-4,-2.4,-1,.8,-1.3,3.4,-7.6,-5.7,-8.1,-3.5,-6.8,-5.8,-7.2,-4.2,-8.9,-10.2,-8.4,-8.2,-9.9,-8.4,-9.7,-6.4,-11.1,-11.1,-11.8,-10,-50,.4,-50,2.6,-7.2,-7,-7.4,-5.1,-50,-5.7,-9.8,-3.2,-8.4,-7.4,-8.9,-5.9],[-8.5,-10.3,-10,-9,-1.4,-4.9,-3.9,-3.7,-10,-8.5,-10.2,-7.8,-7.8,-12.4,-8.5,-11.1,0,-5.5,-2.3,-4.9,12.6,10,11.1,10.5,-6,-8.3,-6.9,-7.5,-2.2,-7.4,-5.3,-5.9,-8.9,-12.5,-9.4,-11.6,-.7,-3.9,-2.3,-3,-9.1,-9.8,-9.2,-9.5,-5.6,-9,-8,-8.5,-50,-15.3,-50,-14.1,2.3,-1.4,.3,-.5,-50,-13.6,-14.3,-11.5,-5.3,-13.7,-6.1,-12.7],[-11.2,-8.1,-11.8,-8.8,-4.1,-1.9,-3.9,-3.5,-11.6,-5.9,-11.5,-7.9,-10.2,-10.1,-10.2,-11.2,-3.4,-2.6,-4.1,-3.8,10,13.1,10.7,10.6,-8.1,-5.2,-8,-6.7,-6.1,-3.7,-7.5,-5.6,-11.1,-10.3,-10.6,-11.9,-3.2,-1,-2.2,-2.8,-10.5,-8.1,-9.4,-9.5,-8.3,-6.9,-9.4,-8.8,-50,-11.3,-50,-12.8,-.6,2.2,-.3,.1,-50,-10.1,-17.5,-11.1,-8.6,-9.9,-8.6,-11.9],[-8.9,-9.4,-8.6,-8.9,-2.9,-4.5,-2.2,-3.9,-8.8,-7.5,-8.1,-7.9,-8.8,-11.6,-7.7,-11.9,-.7,-4.1,-.5,-4,11.1,10.7,13.2,10.4,-5.7,-5.8,-3.5,-6.1,-3.6,-6.5,-3.3,-5.5,-9.4,-11,-8.7,-11.2,-1.8,-2.7,.7,-3,-9.1,-8.2,-7.3,-9.4,-7.2,-8.2,-7.2,-8.2,-50,-13.2,-50,-13.3,.5,-.9,1.8,-.6,-50,-11.4,-11.1,-10.5,-6.1,-12.9,-5,-11.9],[-10.8,-9.6,-11.9,-7.7,-3.3,-3.8,-4.5,-1.6,-11.7,-7.7,-12,-6.2,-9.6,-12,-9.8,-9.4,-3.2,-4.7,-4.6,-2.4,10.5,10.6,10.4,12.6,-8.2,-7.9,-9,-4.7,-6.1,-6,-7.5,-2.9,-10.9,-12.2,-11.2,-10.9,-2.4,-2.9,-2.7,-.9,-10.4,-9.7,-10.2,-8,-8.4,-9.1,-9.3,-6.5,-50,-13.3,-50,-11,-0,-.4,-.4,2.3,-50,-10.9,-17.2,-8.3,-8.3,-12.7,-7.8,-9.3],[2.1,-8.1,1.2,-7,-8,-9.5,-7.3,-9.9,10.5,-5.5,9.3,-5.7,-9.5,-15.1,-10,-12.9,2.5,-1.2,-.1,-1,-6,-8.1,-5.7,-8.2,13.8,11.3,11.8,12.1,-6,-9.1,-9,-9.5,-8.9,-13.4,-10,-13.1,-9.9,-11.7,-9.8,-12.8,-5.9,-9.4,-6.5,-8.1,-10.7,-14,-13.3,-13.9,-50,-11.9,-50,-9.7,-8.9,-10.8,-9,-11.1,-50,-6.5,-5.3,-6.3,-10.5,-16.2,-10.4,-15.2],[0,-5,.5,-6.8,-9.1,-7.8,-7.5,-8.9,7.7,-2.4,8.2,-5.1,-11.9,-13.1,-10.4,-14.3,-.8,3,-.9,.8,-8.3,-5.2,-5.8,-7.9,11.3,15,11.2,12.8,-9.7,-5.3,-9.2,-7.8,-11.7,-10.6,-10.1,-12.2,-11.7,-8.8,-8.9,-11.8,-9.3,-5,-8,-8.2,-13.6,-11.4,-12.8,-13,-50,-7.2,-50,-8.4,-11,-7.7,-8.7,-10.2,-50,-1.5,-7.1,-4.9,-11.2,-11.6,-11.6,-15],[1.4,-7.3,2.2,-7.1,-8,-9.3,-6.4,-9.6,9.1,-5.5,10,-5.4,-10.9,-14.3,-8.4,-14,.9,-1.1,2.4,-1.3,-6.9,-8,-3.5,-9,11.8,11.2,13.4,11.4,-7.3,-8.8,-6.5,-8.5,-10,-12.5,-7.8,-12.5,-9.6,-11,-7.1,-10.7,-7.9,-8,-4.3,-9.4,-11.4,-12.3,-10.9,-12.9,-50,-11.8,-50,-11.2,-9.4,-9.8,-7.3,-10.5,-50,-6.2,-2.2,-6.7,-9.8,-15.2,-8.5,-14.9],[.2,-6.3,.1,-4.3,-8.2,-8.9,-8.5,-7,8.5,-4.1,8,-2.1,-10.5,-13.4,-10.2,-11.9,.2,1.6,-.8,3.4,-7.5,-6.7,-6.1,-4.7,12.1,12.8,11.4,14.7,-8.7,-7.4,-9.4,-5.3,-9.9,-11.8,-10.5,-10.3,-9.9,-10.1,-9.3,-9.3,-8.1,-7.2,-8,-5.2,-12,-12.1,-12.6,-10.9,-50,-7.9,-50,-5.3,-9.3,-8.8,-8.9,-7,-50,-3.6,-7.1,-1.2,-10.2,-12.7,-9.9,-11],[-10.2,-13.4,-11.8,-12.4,-6,-9.4,-7.1,-8.6,-9.8,-12.9,-10.8,-12.4,2.3,-1.4,1,-1,-3,-8,-5.1,-7.6,-2.2,-6.1,-3.6,-6.1,-6,-9.7,-7.3,-8.7,11.2,7.9,8.9,8.1,-12.1,-17.4,-13.2,-16.8,-6.3,-9.5,-7.5,-8.8,-12.7,-15.2,-13.1,-14.2,0,-3.1,-1.8,-3.1,-50,-10.7,-50,-9.3,-4.6,-8.9,-5.9,-8.3,-50,-12.8,-9.6,-10.6,9.5,-3.2,8.2,-2.8],[-13.5,-11.3,-14,-12.9,-9.3,-7.1,-8.2,-8.9,-12.7,-10.3,-11.9,-12.3,-.4,1.4,-.6,-.4,-7.2,-4.7,-6.9,-5.7,-7.4,-3.7,-6.5,-6,-9.1,-5.3,-8.8,-7.4,7.9,11.9,7.8,9.3,-15.2,-15.1,-14.6,-17.2,-9.7,-7.3,-8.2,-9.2,-15,-12.8,-14.1,-14.9,-2.8,.2,-2.9,-2.3,-50,-7.4,-50,-8.7,-9.4,-7.3,-9.4,-9.4,-50,-8,-11.9,-9.7,6.5,.5,6.4,-1.8],[-13,-14.4,-11.9,-13.9,-7.7,-9,-6.7,-8.8,-11.7,-12.7,-10.7,-13.1,-.2,-1.6,1.7,-1.6,-5.7,-8.7,-4.8,-8.1,-5.3,-7.5,-3.3,-7.5,-9,-9.2,-6.5,-9.4,8.9,7.8,10.1,7.8,-14.3,-17.7,-13,-17.8,-8,-9.4,-6.2,-9.2,-15.1,-14.9,-12.2,-14.9,-1.8,-3.2,-.8,-3.2,-50,-10.8,-50,-9.9,-7.3,-9.6,-6.4,-9.4,-50,-12.3,-8.7,-11.3,7.6,-3.3,8.7,-2.9],[-12.5,-12.9,-13.4,-10,-8.5,-9,-7.8,-6.8,-11.8,-11.3,-12.4,-10.1,-.3,-.5,-.5,1.2,-6.1,-6,-6.7,-3.5,-5.9,-5.6,-5.5,-2.9,-9.5,-7.8,-8.5,-5.3,8.1,9.3,7.8,11.8,-14.4,-15.7,-14.5,-14.6,-8.4,-8.7,-7.9,-7.1,-14.3,-13.8,-13.8,-12.3,-2.4,-2.2,-2.9,-.2,-50,-8.9,-50,-7.1,-8.1,-9.1,-8.7,-6.6,-50,-9.7,-11.4,-8,6.8,-1.8,6.9,.4],[-2.6,-6.3,-4.9,-4.9,-6.4,-9.4,-7.9,-8.6,-6.3,-7.4,-8.2,-6.6,-9.7,-14.9,-11.1,-13.9,-.2,-8.2,-2.3,-6.8,-8.9,-11.1,-9.4,-10.9,-8.9,-11.7,-10,-9.9,-12.1,-15.2,-14.3,-14.4,11.1,2.9,9.2,3.5,-3,-7,-4.3,-6.2,-2.2,-6.6,-3.7,-5.7,-6,-10.4,-8.6,-9.5,-50,-15.5,-50,-13.9,-7.8,-10.5,-8.7,-9.6,-50,-16.5,-17.1,-14.8,-12.1,-18.9,-12.4,-17.4],[-8.5,.8,-9.1,-.7,-10.1,-7.5,-9.1,-8.2,-11.4,-3.1,-11.8,-4.4,-15.5,-14.3,-14.8,-15.4,-6.6,-4.7,-7.1,-5.8,-12.5,-10.3,-11,-12.2,-13.4,-10.6,-12.5,-11.8,-17.4,-15.1,-17.7,-15.7,2.9,12.5,3.1,10.3,-7.7,-5.2,-6.2,-7.3,-5.4,-1.7,-5.4,-3.7,-11.6,-9.1,-13,-10.8,-50,-10.3,-50,-11.2,-9.8,-8.3,-9.1,-9.7,-50,-12.7,-20.6,-13.1,-16,-16.6,-17,-18.4],[-5,-6.4,-3.4,-5.6,-7.5,-9.3,-7.1,-8.8,-8.8,-7.4,-6.9,-6.9,-11.4,-15.2,-9.7,-13.7,-1.8,-7.8,-.8,-7.2,-9.4,-10.6,-8.7,-11.2,-10,-10.1,-7.8,-10.5,-13.2,-14.6,-13,-14.5,9.2,3.1,10.8,3,-4.5,-6.7,-2.7,-6.7,-5,-6.8,-2.5,-6.7,-7.5,-10.4,-7.4,-10.2,-50,-15.5,-50,-14.2,-8.9,-10.2,-8.5,-10,-50,-15.6,-15.3,-15.5,-13,-18.8,-12.6,-18.3],[-8.1,-1.1,-8.9,1.4,-8.6,-9.2,-9.4,-6.8,-11,-4.9,-11.5,-2.6,-13.7,-16.8,-14.5,-12.6,-6,-6.7,-7.2,-4.2,-11.6,-11.9,-11.2,-10.9,-13.1,-12.2,-12.5,-10.3,-16.8,-17.2,-17.8,-14.6,3.5,10.3,3,12.4,-6.9,-7.5,-6.8,-4.9,-5.4,-4.2,-5.4,-1.3,-10.8,-11.5,-12.4,-8.2,-50,-12.5,-50,-8.9,-9.2,-10,-9.4,-7.9,-50,-14.3,-19.9,-11.4,-16.2,-19.2,-15.8,-15.9],[-6.3,-7.4,-8,-6,2.8,-.7,.9,.3,-7.5,-4.4,-8.4,-3.6,-3,-7.7,-3.7,-6.2,-5.3,-10,-7.2,-8.9,-.7,-3.2,-1.8,-2.4,-9.9,-11.7,-9.6,-9.9,-6.3,-9.7,-8,-8.4,-3,-7.7,-4.5,-6.9,11.3,8.2,9.4,9.1,-1,-3.3,-1.8,-2.4,1.5,-2.1,-.4,-1.1,-50,-14.5,-50,-12.9,2.8,-0,1.4,.7,-50,-8.7,-14.1,-7.5,-5.2,-12.5,-6.5,-10.7],[-9.9,-5,-10,-6.5,-.7,2.6,-.2,.1,-10.3,-1.8,-9.9,-3.8,-6.4,-4.7,-5.8,-6.7,-8.2,-8.3,-8,-10.2,-3.9,-1,-2.7,-2.9,-11.7,-8.8,-11,-10.1,-9.5,-7.3,-9.4,-8.7,-7,-5.2,-6.7,-7.5,8.2,11.6,8.8,9.1,-3.7,-.9,-3.1,-3,-2,1.2,-2.3,-1.3,-50,-12.1,-50,-12.6,.1,2.5,.7,.6,-50,-6,-14.8,-7.5,-8.6,-9.4,-8.5,-11.2],[-7.5,-6.2,-7.2,-6.2,.9,.2,2.5,.2,-8.3,-3.5,-7.1,-3.7,-4.1,-6.3,-3.1,-6.3,-5.7,-8.9,-5.6,-8.4,-2.3,-2.2,.7,-2.7,-9.8,-8.9,-7.1,-9.3,-7.5,-8.2,-6.2,-7.9,-4.3,-6.2,-2.7,-6.8,9.4,8.8,12.1,8.8,-2.1,-2,.1,-2.4,0,-1.1,1.3,-.8,-50,-11.9,-50,-12.6,1.2,.7,3.5,.8,-50,-7.1,-12.4,-7.1,-7.1,-10.6,-5,-10.6],[-9,-6.5,-10,-4.8,.1,-.1,-.3,2.4,-9.9,-3.5,-10.6,-2,-5.4,-6.6,-5.6,-4.4,-7.6,-9.9,-8.5,-8.2,-3,-2.8,-3,-.9,-12.8,-11.8,-10.7,-9.3,-8.8,-9.2,-9.2,-7.1,-6.2,-7.3,-6.7,-4.9,9.1,9.1,8.8,11.2,-3.1,-3,-3.3,-1,-1.1,-1.4,-2,1.2,-50,-12.8,-50,-10.9,.8,.5,.7,2.3,-50,-7.5,-16.5,-5.9,-7.8,-11.1,-7.8,-9],[-7.1,-5.6,-9.1,-5.1,-5.9,-8,-6.9,-7.4,-1.9,-1.6,-4.7,-1.4,-9.6,-14.6,-10.4,-13,-6.7,-10.8,-9.4,-9.9,-9.1,-10.5,-9.1,-10.4,-5.9,-9.3,-7.9,-8.1,-12.7,-15,-15.1,-14.3,-2.2,-5.4,-5,-5.4,-1,-3.7,-2.1,-3.1,12.8,9.6,11.1,10.1,-4.8,-9.4,-8.1,-8.6,-50,-18.3,-50,-15.4,-5.9,-7.5,-6.6,-7.1,-50,-9.5,-11.7,-8.4,-12.5,-17.3,-13.2,-15.4],[-10.2,-1.6,-10.2,-3.2,-7.3,-4.6,-6.5,-6.2,-6.7,3,-6.8,.8,-11.9,-10.8,-11.5,-12.2,-9.6,-7.1,-9.7,-8.4,-9.8,-8.1,-8.2,-9.7,-9.4,-5,-8,-7.2,-15.2,-12.8,-14.9,-13.8,-6.6,-1.7,-6.8,-4.2,-3.3,-.9,-2,-3,9.6,12.8,9.7,10.5,-8.5,-5.6,-9.3,-7.8,-50,-12.7,-50,-13.8,-6.8,-5.1,-5.3,-6.5,-50,-4.1,-12.8,-5.8,-14.4,-14.1,-13.6,-14.8],[-8.2,-4.7,-7.1,-5,-6.5,-7.7,-5.5,-6.9,-4.1,-.8,-1.2,-.9,-10.5,-12.8,-8.2,-13,-7.5,-10,-7.2,-9.7,-9.2,-9.4,-7.3,-10.2,-6.5,-8,-4.3,-8,-13.1,-14.1,-12.2,-13.8,-3.7,-5.4,-2.5,-5.4,-1.8,-3.1,.1,-3.3,11.1,9.7,12.9,9.8,-5.5,-8.1,-5.4,-7.8,-50,-16.4,-50,-14.8,-5.9,-7.1,-4.7,-7.2,-50,-8.4,-6.4,-8.1,-12.1,-16.2,-10.3,-15.8],[-9.2,-3,-9.9,-1.2,-6.5,-6.1,-6.8,-4.4,-6.4,.9,-7,3,-11.8,-13,-11.1,-10.4,-9.3,-9.2,-9.8,-6.4,-9.5,-9.5,-9.4,-8,-8.1,-8.2,-9.4,-5.2,-14.2,-14.9,-14.9,-12.3,-5.7,-3.7,-6.7,-1.3,-2.4,-3,-2.4,-1,10.1,10.5,9.8,13.1,-7.2,-8,-8.4,-5,-50,-14.7,-50,-11.4,-6.3,-6.7,-5.8,-5,-50,-6.1,-13.4,-3.6,-13,-16,-13.7,-13.3],[-8.2,-10.8,-10.1,-9.8,-.4,-3.6,-1.7,-2.9,-7.9,-8.4,-9.8,-8.2,6.2,2.3,.6,2.9,-7.1,-11.6,-9.2,-11.1,-5.6,-8.3,-7.2,-8.4,-10.7,-13.6,-11.4,-12,0,-2.8,-1.8,-2.4,-6,-11.6,-7.5,-10.8,1.5,-2,0,-1.1,-4.8,-8.5,-5.5,-7.2,11.9,8.6,10,9,-50,-14.2,-50,-12.8,-4.1,-7.4,-5.7,-6.5,-50,-11,-14.3,-9.9,1.4,-7.9,-.7,-6.8],[-12.5,-8.7,-13,-9.9,-3.9,-1,-3.4,-2.9,-12.5,-6.3,-11.6,-8.1,3.3,6,-1.6,3.8,-10.5,-10.1,-11.1,-11.1,-9,-6.9,-8.2,-9.1,-14,-11.4,-12.3,-12.1,-3.1,.2,-3.2,-2.2,-10.4,-9.1,-10.4,-11.5,-2.1,1.2,-1.1,-1.4,-9.4,-5.6,-8.1,-8,8.6,12.4,8.6,9.5,-50,-10.4,-50,-11.6,-7.2,-5.7,-7.5,-7.4,-50,-8.6,-15.7,-9.7,-3,-3.7,-3.2,-5.9],[-11.1,-11.9,-10.6,-11.3,-2.6,-4.1,-1.7,-3.5,-11.4,-9.6,-9.6,-9.2,3.7,2.5,1.6,2.5,-9.6,-12.3,-9.5,-11.8,-8,-9.4,-7.2,-9.3,-13.3,-12.8,-10.9,-12.6,-1.8,-2.9,-.8,-2.9,-8.6,-13,-7.4,-12.4,-.4,-2.3,1.3,-2,-8.1,-9.3,-5.4,-8.4,10,8.6,11.4,8.9,-50,-13.7,-50,-13.2,-6.1,-8.1,-5.5,-7.5,-50,-11.3,-12.7,-10.1,-1.6,-7.8,-.3,-7.2],[-11.4,-10,-12.7,-8.2,-3.1,-3.1,-2.8,-.9,-11.7,-7.3,-12.1,-5.8,3.6,3.6,-1.1,5.8,-9.4,-11.9,-10.7,-10,-8.5,-8.8,-8.2,-6.5,-13.9,-13,-12.9,-10.9,-3.1,-2.3,-3.2,-.2,-9.5,-10.8,-10.2,-8.2,-1.1,-1.3,-.8,1.2,-8.6,-7.8,-7.8,-5,9,9.5,8.9,12,-50,-13,-50,-10.3,-6.2,-7,-7.1,-5.4,-50,-9.3,-14,-8.2,-2.4,-6.3,-2.4,-3.9],[-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,33.3,-50,30.6,-50,-50,-50,-50,-50,29.2,-50,-50,-50,-50,-50,-50,-50],[-14.8,-6.2,-14.9,-7.6,-14.6,-11.6,-13,-12.2,-14,-9,-14.1,-10.1,-13.6,-11.2,-12.4,-12.5,-8.1,2.2,-8.7,.4,-15.3,-11.3,-13.2,-13.3,-11.9,-7.2,-11.8,-7.9,-10.7,-7.4,-10.8,-8.9,-15.5,-10.3,-15.5,-12.5,-14.5,-12.1,-11.9,-12.8,-18.3,-12.7,-16.4,-14.7,-14.2,-10.4,-13.7,-13,-50,15.1,-50,13.3,-9.9,-5.8,-8.9,-7.6,-50,-1.5,-7.8,-3,-8.1,3.6,-9.4,2],[-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,30.6,-50,35.2,-50,-50,-50,-50,-50,28.5,-50,-50,-50,-50,-50,-50,-50],[-13.8,-7.5,-14.4,-5.1,-12.6,-11.6,-11.5,-10.1,-13.2,-9.7,-12.7,-7.4,-11.9,-11.9,-11.5,-10.2,-7.2,.9,-8.6,2.6,-14.1,-12.8,-13.3,-11,-9.7,-8.4,-11.2,-5.3,-9.3,-8.7,-9.9,-7.1,-13.9,-11.2,-14.2,-8.9,-12.9,-12.6,-12.6,-10.9,-15.4,-13.8,-14.8,-11.4,-12.8,-11.6,-13.2,-10.3,-50,13.3,-50,15.2,-8.6,-7,-8.4,-4.8,-50,-3,-7.1,-.1,-7.3,2.3,-8.7,3.9],[-7.3,-6.3,-8.9,-5.5,2.9,.2,1.5,1.2,-8.5,-2.3,-10,-1.7,-5.6,-10.5,-5.5,-9.6,-4.3,-7.9,-6.1,-7.2,2.3,-.6,.5,-0,-8.9,-11,-9.4,-9.3,-4.6,-9.4,-7.3,-8.1,-7.8,-9.8,-8.9,-9.2,2.8,.1,1.2,.8,-5.9,-6.8,-5.9,-6.3,-4.1,-7.2,-6.1,-6.2,-50,-9.9,-50,-8.6,12.5,9.4,11,9.8,-50,-4.8,-8.7,-3.5,-0,-8.6,-2.1,-7],[-10.1,-4.3,-10.8,-5.8,.1,2.3,.7,.6,-10.4,-.2,-10.8,-2,-8.8,-9.2,-8,-9.7,-6.8,-5.9,-7.5,-7,-1.4,2.2,-.9,-.4,-10.8,-7.7,-9.8,-8.8,-8.9,-7.3,-9.6,-9.1,-10.5,-8.3,-10.2,-10,-0,2.5,.7,.5,-7.5,-5.1,-7.1,-6.7,-7.4,-5.7,-8.1,-7,-50,-5.8,-50,-7,9.4,12.7,10.1,10,-50,-1.5,-11.3,-3.3,-5.4,-4.2,-5.6,-6.8],[-8.4,-6.2,-8.9,-5.9,1.8,.4,2.7,1.2,-9.1,-1.2,-8.8,-1.5,-7.2,-10.5,-4.9,-9.6,-5.7,-7.4,-5.5,-7.4,.3,-.3,1.8,-.4,-9,-8.7,-7.3,-8.9,-5.9,-9.4,-6.4,-8.7,-8.7,-9.1,-8.5,-9.4,1.4,.7,3.5,.7,-6.6,-5.3,-4.7,-5.8,-5.7,-7.5,-5.5,-7.1,-50,-8.9,-50,-8.4,11,10.1,13.2,10.2,-50,-4.2,-6.1,-3.6,-3.5,-8.4,-1.2,-6.8],[-9.1,-5.4,-10.4,-4.2,1,.5,.6,2.4,-9.6,-1.5,-10.5,-.5,-8.9,-10.5,-7.2,-8.3,-6.3,-6.9,-7.7,-5.1,-.5,.1,-.6,2.3,-11.1,-10.2,-10.5,-7,-8.3,-9.4,-9.4,-6.6,-9.6,-9.7,-10,-7.9,.7,.6,.8,2.3,-7.1,-6.5,-7.2,-5,-6.5,-7.4,-7.5,-5.4,-50,-7.6,-50,-4.8,9.8,10,10.2,12.1,-50,-3.1,-11.4,-.7,-4.6,-6.6,-4.9,-3.9],[-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,29.2,-50,28.5,-50,-50,-50,-50,-50,33.3,-50,-50,-50,-50,-50,-50,-50],[-13,-7,-13.1,-8.3,-9.2,-6.5,-8.9,-7.6,-9.8,-.7,-9.2,-2.1,-12.4,-10.3,-12.4,-11.6,-9.5,-4.6,-10.4,-5.7,-13.6,-10.1,-11.4,-10.9,-6.5,-1.5,-6.2,-3.6,-12.8,-8,-12.3,-9.7,-16.5,-12.7,-15.6,-14.3,-8.7,-6,-7.1,-7.5,-9.5,-4.1,-8.4,-6.1,-11,-8.6,-11.3,-9.3,-50,-1.5,-50,-3,-4.8,-1.5,-4.2,-3.1,-50,16.4,-5.1,14.2,-10.1,-4.3,-10,-5.4],[-13.5,-16.3,-11.8,-15.5,-13.6,-15.3,-12.1,-16.1,-7.7,-13.3,-4.2,-12.6,-14.1,-16.2,-10.3,-15.4,-9.6,-11.6,-7.7,-9.8,-14.3,-17.5,-11.1,-17.2,-5.3,-7.1,-2.2,-7.1,-9.6,-11.9,-8.7,-11.4,-17.1,-20.6,-15.3,-19.9,-14.1,-14.8,-12.4,-16.5,-11.7,-12.8,-6.4,-13.4,-14.3,-15.7,-12.7,-14,-50,-7.8,-50,-7.1,-8.7,-11.3,-6.1,-11.4,-50,-5.1,18.6,-4.8,-8.6,-8.1,-4.5,-7.3],[-12.4,-8.2,-13,-5.9,-7.7,-7.8,-7.4,-5.8,-8.8,-2,-9.3,-.4,-11.6,-11.3,-11.6,-9.4,-8.9,-5.6,-10,-3.2,-11.5,-11.1,-10.5,-8.3,-6.3,-4.9,-6.7,-1.2,-10.6,-9.7,-11.3,-8,-14.8,-13.1,-15.5,-11.4,-7.5,-7.5,-7.1,-5.9,-8.4,-5.8,-8.1,-3.6,-9.9,-9.7,-10.1,-8.2,-50,-3,-50,-.1,-3.5,-3.3,-3.6,-.7,-50,14.2,-4.8,16.4,-8.9,-5.8,-8.9,-3.4],[-10.7,-13.2,-12.4,-11.6,-4.8,-8.4,-6.1,-7.2,-10.3,-11.8,-11,-11.6,2.8,-1.7,.7,-1.1,-6.2,-9.7,-7.3,-8.4,-5.3,-8.6,-6.1,-8.3,-10.5,-11.2,-9.8,-10.2,9.5,6.5,7.6,6.8,-12.1,-16,-13,-16.2,-5.2,-8.6,-7.1,-7.8,-12.5,-14.4,-12.1,-13,1.4,-3,-1.6,-2.4,-50,-8.1,-50,-7.3,-0,-5.4,-3.5,-4.6,-50,-10.1,-8.6,-8.9,13.2,-.9,9.7,-.3],[-18.1,-12.3,-19.4,-14.2,-12.2,-9.5,-11.5,-10.8,-17.9,-11.9,-18.2,-13.9,-6.4,-3.7,-6.8,-5.4,-12.8,-5.9,-13.6,-7.4,-13.7,-9.9,-12.9,-12.7,-16.2,-11.6,-15.2,-12.7,-3.2,.5,-3.3,-1.8,-18.9,-16.6,-18.8,-19.2,-12.5,-9.4,-10.6,-11.1,-17.3,-14.1,-16.2,-16,-7.9,-3.7,-7.8,-6.3,-50,3.6,-50,2.3,-8.6,-4.2,-8.4,-6.6,-50,-4.3,-8.1,-5.8,-.9,14.2,-1.8,11.6],[-11.8,-13.1,-11.5,-12,-6.2,-8.3,-5.4,-7.4,-11.8,-12.3,-11.1,-11.4,.5,-2.5,2.4,-1.6,-6.8,-9.9,-6.4,-8.9,-6.1,-8.6,-5,-7.8,-10.4,-11.6,-8.5,-9.9,8.2,6.4,8.7,6.9,-12.4,-17,-12.6,-15.8,-6.5,-8.5,-5,-7.8,-13.2,-13.6,-10.3,-13.7,-.7,-3.2,-.3,-2.4,-50,-9.4,-50,-8.7,-2.1,-5.6,-1.2,-4.9,-50,-10,-4.5,-8.9,9.7,-1.8,11.3,-.9],[-17.2,-13.3,-17.8,-11.6,-11,-11.1,-10.4,-9,-16,-12.7,-16.1,-11.1,-5.2,-5.4,-6,-3.3,-11.8,-7.3,-13.3,-5.9,-12.7,-11.9,-11.9,-9.3,-15.2,-15,-14.9,-11,-2.8,-1.8,-2.9,.4,-17.4,-18.4,-18.3,-15.9,-10.7,-11.2,-10.6,-9,-15.4,-14.8,-15.8,-13.3,-6.8,-5.9,-7.2,-3.9,-50,2,-50,3.9,-7,-6.8,-6.8,-3.9,-50,-5.4,-7.3,-3.4,-.3,11.6,-.9,14.1]];TRANS=[[5,0,0,4],[0,5,4,0],[0,4,5,0],[4,0,0,5]];CONBLO={A:0,R:1,N:2,D:3,C:4,Q:5,E:6,G:7,H:8,I:9,L:10,K:11,M:12,F:13,P:14,S:15,T:16,W:17,Y:18,V:19,B:20,Z:21,X:22,"*":23};CONNUCL={A:0,T:1,C:2,G:3};CONSCHN={AAA:0,AAC:1,AAG:2,AAT:3,ACA:4,ACC:5,ACG:6,ACT:7,AGA:8,AGC:9,AGG:10,AGT:11,ATA:12,ATC:13,ATG:14,ATT:15,CAA:16,CAC:17,CAG:18,CAT:19,CCA:20,CCC:21,CCG:22,CCT:23,CGA:24,CGC:25,CGG:26,CGT:27,CTA:28,CTC:29,CTG:30,CTT:31,GAA:32,GAC:33,GAG:34,GAT:35,GCA:36,GCC:37,GCG:38,GCT:39,GGA:40,GGC:41,GGG:42,GGT:43,GTA:44,GTC:45,GTG:46,GTT:47,TAA:48,TAC:49,TAG:50,TAT:51,TCA:52,TCC:53,TCG:54,TCT:55,TGA:56,TGC:57,TGG:58,TGT:59,TTA:60,TTC:61,TTG:62,TTT:63};fillNeedleman(){for(let t=0;t<=this.len1;t++)this.dpGrid[t][0].value=-t*this.gap,this.dpGrid[t][0].parentI=t-1,this.dpGrid[t][0].parentJ=0;for(let t=1;t<=this.len2;t++)this.dpGrid[0][t].value=-t*this.gap,this.dpGrid[0][t].parentI=0,this.dpGrid[0][t].parentJ=t-1}fillOne(t,e){this.dpGrid[t][e].value=Math.max(this.dpGrid[t-1][e-1].value+this.scores[t-1][e-1],Math.max(this.dpGrid[t-1][e].value-this.gap,this.dpGrid[t][e-1].value-this.gap)),this.dpGrid[t][e].value==this.dpGrid[t-1][e-1].value+this.scores[t-1][e-1]?(this.dpGrid[t][e].parentI=t-1,this.dpGrid[t][e].parentJ=e-1):this.dpGrid[t][e].value==this.dpGrid[t-1][e].value-this.gap?(this.dpGrid[t][e].parentI=t-1,this.dpGrid[t][e].parentJ=e):(this.dpGrid[t][e].parentI=t,this.dpGrid[t][e].parentJ=e-1)}gridFromName(t){switch(t){case"BLOSUM45":this.alignGrid=this.BLOSUM45,this.connections=this.CONBLO,this.step=1;break;case"BLOSUM50":this.alignGrid=this.BLOSUM50,this.connections=this.CONBLO,this.step=1;break;case"BLOSUM62":this.alignGrid=this.BLOSUM62,this.connections=this.CONBLO,this.step=1;break;case"BLOSUM80":this.alignGrid=this.BLOSUM80,this.connections=this.CONBLO,this.step=1;break;case"BLOSUM90":this.alignGrid=this.BLOSUM90,this.connections=this.CONBLO,this.step=1;break;case"PAM30":this.alignGrid=this.PAM30,this.connections=this.CONBLO,this.step=1;break;case"PAM70":this.alignGrid=this.PAM70,this.connections=this.CONBLO,this.step=1;break;case"PAM250":this.alignGrid=this.PAM250,this.connections=this.CONBLO,this.step=1;break;case"NUCLEOTIDES":this.alignGrid=this.NUCLEOTIDES,this.connections=this.CONNUCL,this.step=1;break;case"TRANS":this.alignGrid=this.TRANS,this.connections=this.CONNUCL,this.step=1;break;case"SCHNEIDER":this.alignGrid=this.SCHNEIDER,this.connections=this.CONSCHN,this.step=3}this.fillScores()}constructResult(t,e){let n="",i="",r="";const s=this.dpGrid[t][e].value;for(let t=0;t<this.step;t++)r+="|";for(;t>0||e>0;){this.dpGrid[t][e].parentI==t?(n=r+n,i=this.seq2.substr((e-1)*this.step,this.step)+i):this.dpGrid[t][e].parentJ==e?(i=r+i,n=this.seq1.substr((t-1)*this.step,this.step)+n):(n=t-1>=0?this.seq1.substr((t-1)*this.step,this.step)+n:r+n,i=e-1>=0?this.seq2.substr((e-1)*this.step,this.step)+i:r+i);const o=t;t=this.dpGrid[t][e].parentI,e=this.dpGrid[o][e].parentJ}return new o(n,i,s)}fillScores(){this.scores=[];for(let t=0;t<this.len1;t++){this.scores.push([]);for(let e=0;e<this.len2;e++)this.scores[t].push(this.alignGrid[this.connections[this.seq1.substr(t*this.step,this.step)]][this.connections[this.seq2.substr(e*this.step,this.step)]])}}typeRec(){if(/[ATGC]*/.test(this.seq1)&&/[ATGC]*/.test(this.seq2))return"NUCLEOTIDES";if(/[ARNDCQEGHILKMFPSTWYVBZX*]*/.test(this.seq1)&&/[ARNDCQEGHILKMFPSTWYVBZX*]*/.test(this.seq2))return"BLOSUM62";throw Error("Can't recognize sequence type")}needlemanWunsch(){this.dpGrid=[];for(let t=0;t<this.len1+1;t++){const t=[];for(let e=0;e<this.len2+1;e++)t.push(new i);this.dpGrid.push(t)}this.fillNeedleman();for(let t=1;t<=this.len1;t++)for(let e=1;e<=this.len2;e++)this.fillOne(t,e);return this.constructResult(this.len1,this.len2)}smithWaterman(){this.dpGrid=[];for(let t=0;t<this.len1+1;t++){const t=[];for(let e=0;e<this.len2+1;e++)t.push(new i);this.dpGrid.push(t)}let t=0,e=0,n=0;for(let i=1;i<=this.len1;i++)for(let o=1;o<=this.len2;o++)this.fillOne(i,o),this.dpGrid[i][o].value<=0?(this.dpGrid[i][o].value=0,this.dpGrid[i][o].parentI=0,this.dpGrid[i][o].parentJ=0):0==this.dpGrid[this.dpGrid[i][o].parentI][this.dpGrid[i][o].parentJ].value&&(this.dpGrid[i][o].parentI=0,this.dpGrid[i][o].parentJ=0),this.dpGrid[i][o].value>t&&(t=this.dpGrid[i][o].value,e=i,n=o);return this.constructResult(e,n)}setSequences(t,e){this.seq1=t,this.seq2=e,this.len1=this.seq1.length/this.step,this.len2=this.seq2.length/this.step,this.fillScores()}setGap(t){this.gap=t}setMethod(t=""){"AUTO"==t&&(t=this.typeRec()),this.gridFromName(t)}constructor(t,e,n,i=""){this.setMethod(i),this.setSequences(t,e),this.setGap(n)}}},8115:(t,e,n)=>{"use strict";n.d(e,{BQ:()=>m,a7:()=>u,if:()=>p,nI:()=>d});var i=n(4328),o=n(7389),r=n(6082),s=n(8070),a=n(2003),l=n(1407),c=n(4870);const h="substr_helm";class u{seqHelper;units;separator;inputsDiv;substructureInput;separatorInput;editHelmLink;columnsInput;grid;col;dialog;constructor(t,e){this.seqHelper=e,this.col=t[0],this.createUI()}editHelmLinkAction(){(0,c.Ku)(this.inputsDiv,this.grid.root),o.tools.waitForElementInDom(this.grid.root).then((()=>{setTimeout((()=>{this.grid.cell(h,0).element.children[0].dispatchEvent(new KeyboardEvent("keydown",{key:"Enter"}))}),100)}))}updateInputs(){const t=this.units===a.Hi.HELM?o.divV([this.columnsInput,this.editHelmLink]):this.units===a.Hi.SEPARATOR?o.inputs([this.columnsInput,this.substructureInput,this.separatorInput]):o.inputs([this.columnsInput,this.substructureInput]);(0,c.Ku)(this.inputsDiv,t)}updateNotationDiv(){this.units=this.col.meta.units,this.separator=this.col.getTag(a.gp.separator);const t=this.dialog.root.getElementsByClassName("notation-text")[0];t&&(t.textContent=`Notation: ${this.units}`)}createUI(){const t=i.shell.tv.dataFrame;this.columnsInput=o.input.column("Column",{table:t,value:this.col,onValueChanged:t=>{this.col=t,this.updateNotationDiv(),this.updateInputs()},filter:t=>t.semType===r.SEMTYPE.MACROMOLECULE}),this.substructureInput=o.input.string("Substructure",{value:""}),this.editHelmLink=o.link("Edit helm",(()=>this.editHelmLinkAction()),void 0,{style:{position:"relative",left:"95px"}});const e=r.DataFrame.create(1);e.columns.addNewString(h).init((t=>"")),e.col(h).semType=this.col.semType,e.col(h).meta.units=a.Hi.HELM,this.grid=e.plot.grid(),this.separatorInput=o.input.string("Separator",{value:this.separator}),this.inputsDiv=o.div(),this.units=this.col.meta.units,this.separator=this.col.getTag(a.gp.separator),this.updateInputs(),this.dialog=o.dialog("Substructure Search").add(o.divV([o.divText(`Notation: ${this.units}`,"notation-text"),this.inputsDiv])).onOK((async()=>{let t,n=this.units===a.Hi.HELM?e.get(h,0):this.substructureInput.value;this.units===a.Hi.SEPARATOR&&this.separatorInput.value!==this.separator&&this.separatorInput.value&&(n=n.replaceAll(this.separatorInput.value,this.separator)),t=this.units===a.Hi.HELM?await p(n,this.col,this.seqHelper):d(n,this.col),this.col.dataFrame.filter.and(t)})).show()}}function d(t,e,n){const i=n?function(t,e){const n=`${e}`.replace(/[\-\[\]\/\{\}\(\)\*\+\?\.\\\^\$\|]/g,"\\$&"),i=t.charAt(0)===e,o=t.charAt(t.length-1)===e,r=t.replace(new RegExp(`^${n}|${n}$`,"g"),"");return i?o?`${n}${r}${n}`:`${n}${r}${n}|${n}${r}$`:o?`^${r}${n}|${n}${r}${n}`:`^${r}${n}|${n}${r}${n}|${n}${r}$`}(t,n):t,o=r.BitSet.create(e.length);for(let n=0;n<e.length;n++){const r=e.get(n);(r.match(i)||r===t)&&o.set(n,!0,!1)}return o}async function p(t,e,n){e.version!==e.temp["last-invalidated-version"]&&await m(e,n,!0);const o=r.Column.string("helm",1).init((e=>t));o.semType=r.SEMTYPE.MACROMOLECULE,o.meta.units=a.Hi.HELM;const s=await(0,l.R)(o,n,!0,e.temp["monomers-dict"]);return(await i.functions.call("Chem:searchSubstructure",{molStringsColumn:e.temp["monomeric-mols"],molString:s.get(0),molBlockFailover:""})).get(0)}async function m(t,e,n){const i=r.TaskBarProgressIndicator.create(`Invalidating molfiles for ${t.name}`);try{await(0,s.cb)(10);const i=new Map,o=await(0,l.R)(t,e,n,i);t.temp["monomeric-mols"]=o,t.temp["monomers-dict"]=i,t.temp["last-invalidated-version"]=t.version}finally{i.close()}}},966:(t,e,n)=>{"use strict";n.d(e,{V:()=>s,l:()=>a});var i=n(4328),o=n(6082),r=n(6723);function s(t,e,n=[],o=[],s=!0){const l=r._package.seqHelper,[c,h]=a(t,e,l,n,o);return s&&!c&&i.shell.warning(h),c}function a(t,e,n,r=[],s=[]){let a=!0,l="";if(t.semType!==o.SEMTYPE.MACROMOLECULE)i.shell.warning(e+" analysis is allowed for Macromolecules semantic type"),a=!1;else{const i=n.getSeqHandler(t),o=i.notation;if(r.length>0&&!r.some((t=>o.toUpperCase()==t.toUpperCase())))l=`${e} + ' analysis is allowed for Macromolecules with notation ${0==r.length?"any notation":`notation${r.length>1?"s":""} ${r.map((t=>`"${t}"`)).join(", ")} `}.`,a=!1;else if(!i.isHelm()){const t=i.alphabet;s.length>0&&!s.some((e=>t.toUpperCase()==e.toUpperCase()))&&(l=`${e} + ' analysis is allowed for Macromolecules with alphabet ${0==s.length?"any alphabet":`alphabet${s.length>1?"s":""} ${s.map((t=>`"${t}"`)).join(", ")}.`}.`,a=!1)}}return[a,l]}},4139:(t,e,n)=>{"use strict";n.d(e,{HX:()=>h,J:()=>a,b9:()=>c,uF:()=>r});var i,o,r,s,a,l=n(8152);!function(t){t.SPLIT_COL="~split",t.ACTIVITY="~activity",t.ACTIVITY_SCALED="activity_scaled",t.ALIGNED_SEQUENCE="~aligned_sequence",t.AMINO_ACID_RESIDUE="AAR",t.POSITION="Pos",t.P_VALUE="pValue",t.MEAN_DIFFERENCE="Mean difference"}(i||(i={})),function(t){t.AAR="AAR",t.POSITION="Pos",t.SELECTION="selection"}(o||(o={})),function(t){t.MONOMER="Monomer",t.MACROMOLECULE_DIFFERENCE="MacromoleculeDifference",t.ACTIVITY="activity",t.ACTIVITY_SCALED="activityScaled"}(r||(r={})),function(t){t.CELL_CHANGING="isCellChanging"}(s||(s={})),function(t){t.SEPARATOR="."}(a||(a={}));const c="3.3.1",h={pepsea:{gapOpen:1.53,gapExtend:0,method:l.ZY[0]},kalign:{gapOpen:-1,gapExtend:-1,terminalGap:-1}}},5433:(t,e,n)=>{"use strict";n.d(e,{C:()=>u});var i=n(6082),o=n(7389),r=n(4328),s=n(1757),a=n.n(s),l=n(2003);let c=null,h=[];function u(t,e){let n=t??r.shell.t.columns.bySemType("Macromolecule");if(!n)throw new Error("No column with Macromolecule semantic type found");let s=e.getSeqHandler(n),u=s.notation;const d=o.divText("Current notation: "+u,{style:{"text-align":"center","font-weight":"bold","font-size":"14px",padding:"5px"}}),p=[l.Hi.FASTA,l.Hi.SEPARATOR,l.Hi.HELM],m=o.input.column("Column",{table:r.shell.t,value:n,filter:t=>t.semType===i.SEMTYPE.MACROMOLECULE,nullable:!1,onValueChanged:t=>(n=t,s=e.getSeqHandler(n),u=s.notation,u===l.Hi.HELM&&(y.value="/"),d.textContent="Current notation: "+u,g=p.filter((t=>t!==u)),v=o.input.choice("Convert to",{value:g[0],items:g,onValueChanged:b}),b(),c?.clear(),void c?.add(o.div([d,m.root,v.root,y.root])))}),f=["-",".","/"];let g=p.filter((t=>t!==u));const y=o.input.choice("Separator",{value:f[0],items:f}),b=()=>{v.value!==l.Hi.SEPARATOR?a()(y.root).hide():a()(y.root).show()};let v=o.input.choice("Convert to",{value:g[0],items:g,onValueChanged:b});b(),v.onChanged.subscribe((()=>{b()})),null==c&&(c=o.dialog("Convert Sequence Notation").add(o.div([d,m.root,v.root,y.root])).onOK((async()=>{const t=v.value,i=t===l.Hi.SEPARATOR?y.value:void 0;await async function(t,e,n,i){const o=e.getSeqHandler(t).convert(n,i);t.dataFrame.columns.add(o);const s=await r.functions.call("Bio:detectMacromolecule",{col:o});return s&&(o.semType=s),await r.data.detectSemanticTypes(t.dataFrame),o}(n,e,t,i)})).show({x:350,y:100}),h.push(c.onClose.subscribe((t=>{h.forEach((t=>{t.unsubscribe()})),h=[],c=null}))))}},536:(t,e,n)=>{"use strict";n.d(e,{Z:()=>o});var i=n(6956);class o{constructor(t){const e=t.split(i.xe).filter((t=>t));e.forEach((t=>this.validateConnectionItem(t))),this.connectionItems=e}connectionItems;validateConnectionItem(t){const e="(PEPTIDE|RNA)",n=new RegExp(`${e}[0-9]+,${e}[0-9]+,[0-9]+:R[0-9]+-[0-9]+:R[0-9]+`,"g");if(!t.match(n))throw new Error(`Cannot parse connection item from ${t}`)}getConnectionData(){const t=[];return this.connectionItems.forEach((e=>{const n=[],i=e.split(",");i[2].split("-").forEach(((t,e)=>{const o=i[e],r=t.split(":"),s={monomerIdx:parseInt(r[0])-1,rGroupId:parseInt(r[1].slice(1))};n.push({polymerId:o,bond:s})})),t.push(n)})),t}}},6956:(t,e,n)=>{"use strict";n.d(e,{mP:()=>r,pk:()=>o,xe:()=>i});const i="|",o="$",r="H"},9099:(t,e,n)=>{"use strict";n.d(e,{f:()=>s});var i=n(536),o=n(6956),r=n(9034);class s{helmString;constructor(t){this.helmString=t;const e=this.helmString.split(o.pk),n=e[0].split(o.xe);this.simplePolymers=n.map((t=>new r.d(t))),this.connectionList=new i.Z(e[1]),this.bondData=this.getBondData(),this.bondedRGroupsMap=this.getBondedRGroupsMap()}bondData;simplePolymers;connectionList;bondedRGroupsMap;getBondedRGroupsMap(){const t=this.simplePolymers.map((t=>t.monomers.length)).reduce(((t,e)=>t+e),0),e=Array.from({length:t},(()=>[]));return this.bondData.forEach((t=>{t.forEach((t=>{const n=t.monomerIdx,i=t.rGroupId;e[n].push(i)}))})),e}toString(){return this.helmString}getPolymerTypeByMonomerIdx(t){return this.getSimplePolymerByMonomerIdx(t).polymerType}getSimplePolymerByMonomerIdx(t){const e=this.getMonomerIdxShifts(),n=Object.values(e).sort(((t,e)=>t-e)).find((e=>t>=e));if(void 0===n)throw new Error(`Cannot find simple polymer for monomer ${t}`);const i=Object.keys(e).find((t=>e[t]===n));return this.simplePolymers.find((t=>t.id===i))}shiftBondMonomerIds(t,e){e.forEach((e=>{e.forEach((e=>{e.monomerIdx+=t}))}))}getMonomerIdxShifts(){const t={};let e=0;return this.simplePolymers.forEach((n=>{t[n.id]=e,e+=n.monomers.length})),t}getBondData(){const t=this.getMonomerIdxShifts(),e=[];return this.simplePolymers.forEach((n=>{const i=n.getBondData(),o=t[n.id];this.shiftBondMonomerIds(o,i),e.push(...i)})),this.connectionList.getConnectionData().forEach((n=>{const i=[];n.forEach((e=>{const n=t[e.polymerId],o=e.bond;o.monomerIdx+=n,i.push(o)})),e.push(i)})),e}}},9034:(t,e,n)=>{"use strict";n.d(e,{d:()=>o});var i=n(8438);class o{simplePolymer;isNucleotideSequence=!1;constructor(t){this.simplePolymer=t,this.polymerType=this.getPolymerType(),this.isNucleotideSequence="RNA"===this.polymerType,this.idx=this.getIdx();const{monomers:e,monomerTypes:n}=this.getMonomerSymbolsAndTypes();this.monomers=e,this.monomerTypes=n}polymerType;monomers;idx;monomerTypes;get id(){return this.polymerType+this.idx.toString()}getPolymerType(){const t=new RegExp("(PEPTIDE|RNA)[0-9]+{"),e=this.simplePolymer.match(t);if(!e)throw new Error(`Unsupported polymer type in ${this.simplePolymer}`);return e[1]}getIdx(){const t=new RegExp(`${this.polymerType}([0-9]+){`),e=this.simplePolymer.match(t);if(!e)throw new Error(`Cannot parse simple polymer id from ${this.simplePolymer}`);return parseInt(e[1])}getMonomerSymbolsAndTypes(){const t=new RegExp(`${this.polymerType}${this.idx}{|}`,"g"),e=this.simplePolymer.replace(t,"").split("."),n=[],o=[];return e.forEach((t=>{if(this.isNucleotideSequence){const e=t.split(/\(|\)/).filter((t=>!!t)).map((t=>(0,i.D)(t)));n.push(...e),e.forEach(((t,e)=>o.push(e%3==1?"Branch":"Backbone")))}else n.push((0,i.D)(t)),o.push("Backbone")})),{monomers:n,monomerTypes:o}}getBondData(){const t=[],e=this.monomerTypes.map(((t,e)=>{if("Backbone"===t)return e})).filter((t=>void 0!==t)),n=this.monomerTypes.map(((t,e)=>{if("Branch"===t)return e})).filter((t=>void 0!==t));for(let n=0;n<e.length-1;n++){const i=e[n],o=e[n+1];t.push([{monomerIdx:i,rGroupId:2},{monomerIdx:o,rGroupId:1}])}for(let e=0;e<n.length;e++){const i=n[e],o=i-1;t.push([{monomerIdx:o,rGroupId:3},{monomerIdx:i,rGroupId:1}])}return t}}},8604:(t,e,n)=>{"use strict";n.d(e,{Es:()=>o,G3:()=>s,gt:()=>r,so:()=>i});const i="System:AppData/Bio/monomer-libraries/",o="System:AppData/Bio/monomer-sets/",r="System:AppData/Bio/tests/libraries/HELMmonomerSchema.json",s={explicit:["HELMCoreLibrary.json","polytool-lib.json"],exclude:[],duplicateMonomerPreferences:{}}},1619:(t,e,n)=>{"use strict";n.d(e,{D:()=>_});var i=n(4328),o=n(6082),r=n(7389),s=n(8070),a=n(2003),l=n(608),c=n(8152),h=n(966),u=n(4139),d=n(5072),p=n.n(d),m=n(7825),f=n.n(m),g=n(7659),y=n.n(g),b=n(5056),v=n.n(b),w=n(540),C=n.n(w),A=n(1113),S=n.n(A),x=n(6369),E={};E.styleTagTransform=S(),E.setAttributes=v(),E.insert=y().bind(null,"head"),E.domAPI=f(),E.insertStyleElement=C(),p()(x.A,E),x.A&&x.A.locals&&x.A.locals;var T=n(6723);async function _(t,e){return new Promise((async(n,a)=>{t.clustersCol??=null,t.pepsea??={},t.pepsea.method??=u.HX.pepsea.method,t.pepsea.gapOpen??=u.HX.pepsea.gapOpen,t.pepsea.gapExtend??=u.HX.pepsea.gapExtend;const h=t.col?.dataFrame??i.shell.t,d=t.col??h.columns.bySemType(o.SEMTYPE.MACROMOLECULE);if(null==d){const t="Multiple Sequence Alignment analysis requires a dataset with a macromolecule column.";return i.shell.warning(t),void a(new l.Ap(r.divText(t)))}const p=r.input.choice("Method",{value:t.pepsea.method,items:c.ZY});p.setTooltip("Alignment method");const m=r.input.float("Terminal gap",{value:t?.kalign?.terminalGap});m.setTooltip("Penalty for opening a gap at the beginning or end of the sequence");const f=r.p(`Kalign version: ${u.b9}`,"kalign-version"),g=r.input.float("Gap open",{value:t.pepsea.gapOpen});g.setTooltip("Gap opening penalty at group-to-group alignment");const y=r.input.float("Gap extend",{value:t.pepsea.gapExtend});y.setTooltip("Gap extension penalty to skip the alignment");const b=r.inputs([g,y,m]),v=r.button("Alignment parameters",(()=>{b.hidden=!b.hidden,[g,y,m].forEach((t=>{t.root.style.removeProperty("max-width"),t.captionLabel.style.removeProperty("max-width")}))}),"Adjust alignment parameters such as penalties for opening and extending gaps");v.classList.add("msa-params-button"),b.hidden=!0,v.prepend(r.icons.settings((()=>null)));const w=[p.root.style],C=[m.root.style,f.style];let A,S=d;const x=r.input.column("Sequence",{table:h,value:d,onValueChanged:async t=>{if(!t||t.semType!==o.SEMTYPE.MACROMOLECULE)return _.disabled=!0,await(0,s.cb)(0),void(x.value=S);S=t,_.disabled=!1,A=await I(x.value,h,e,w,C,p,E,g,y,m)},filter:t=>t.semType===o.SEMTYPE.MACROMOLECULE});x.setTooltip("Sequences column to use for alignment");const E=r.input.column("Clusters",{table:h,value:t.clustersCol});E.nullable=!0;const T=r.dialog("MSA").add(x).add(E).add(p).add(b).add(v).add(f).onOK((async()=>{await M(x,h,A,n,a)})),_=T.getButton("OK");if(x.fireChanged(),t.col)return A=await I(t.col,h,e,w,C,p,E,g,y,m),void await M(x,h,A,n,a);T.show()}))}async function M(t,e,n,r,s){let a=null;const l=o.TaskBarProgressIndicator.create("Analyze for MSA ...");try{if(t.fireChanged(),t.value.semType!==o.SEMTYPE.MACROMOLECULE)throw new Error("Chosen column has to be of Macromolecule semantic type");if(void 0===n)throw new Error("Invalid column format");if(a=await n(),null==a)return s("PepSeA container has not started");e.columns.add(a),await i.data.detectSemanticTypes(e),r(a)}catch(t){s(t)}finally{l.close()}}async function I(t,e,n,r,s,d,p,m,f,g){try{if(t.semType!==o.SEMTYPE.MACROMOLECULE)return;const i=e.columns.getUnusedName(`msa(${t.name})`);if((0,h.l)(t,t.name,n,[a.Hi.FASTA,a.Hi.SEPARATOR],[a.YI.DNA,a.YI.RNA,a.YI.PT])[0]){L(r,s,"kalign"),m.value=null,f.value=null,g.value=null;const e=n.getSeqHandler(t),o=e.isFasta()?t:e.convert(a.Hi.FASTA);return async()=>await(0,l.eE)(o,!1,i,p.value)}if((0,h.l)(t,t.name,n,[a.Hi.HELM],[])[0])return L(r,s,"pepsea"),m.value??=u.HX.pepsea.gapOpen,f.value??=u.HX.pepsea.gapExtend,async()=>(0,c.GD)(t,i,d.value,m.value,f.value,p.value);if((0,h.l)(t,t.name,n,[a.Hi.SEPARATOR],[a.YI.UN])[0]){const e=n.getSeqHandler(t).convert(a.Hi.HELM);return L(r,s,"pepsea"),m.value??=u.HX.pepsea.gapOpen,f.value??=u.HX.pepsea.gapExtend,async()=>(0,c.GD)(e,i,d.value,m.value,f.value,p.value)}return m.value=null,f.value=null,g.value=null,void L(r,s,"kalign")}catch(t){const e=t instanceof Error?t.message:t.toString();i.shell.error(e),T._package.logger.error(e)}}function L(t,e,n){if("kalign"===n){for(const e of t)e.display="none";for(const t of e)t.removeProperty("display")}else{for(const t of e)t.display="none";for(const e of t)e.removeProperty("display")}}},608:(t,e,n)=>{"use strict";n.d(e,{Ap:()=>H,aZ:()=>B,eE:()=>F});var i=n(7389),o=n(6082),r=n(1991),s=n.n(r),a=n(3516),l=n(2003);const c=Symbol("Comlink.proxy"),h=Symbol("Comlink.endpoint"),u=Symbol("Comlink.releaseProxy"),d=Symbol("Comlink.thrown"),p=t=>"object"==typeof t&&null!==t||"function"==typeof t,m=new Map([["proxy",{canHandle:t=>p(t)&&t[c],serialize(t){const{port1:e,port2:n}=new MessageChannel;return f(t,e),[n,[n]]},deserialize:t=>(t.start(),y(t))}],["throw",{canHandle:t=>p(t)&&d in t,serialize({value:t}){let e;return e=t instanceof Error?{isError:!0,value:{message:t.message,name:t.name,stack:t.stack}}:{isError:!1,value:t},[e,[]]},deserialize(t){throw t.isError?Object.assign(new Error(t.value.message),t.value):t.value}}]]);function f(t,e=self){e.addEventListener("message",(function n(i){if(!i||!i.data)return;const{id:o,type:r,path:s}=Object.assign({path:[]},i.data),a=(i.data.argumentList||[]).map(x);let l;try{const e=s.slice(0,-1).reduce(((t,e)=>t[e]),t),n=s.reduce(((t,e)=>t[e]),t);switch(r){case"GET":l=n;break;case"SET":e[s.slice(-1)[0]]=x(i.data.value),l=!0;break;case"APPLY":l=n.apply(e,a);break;case"CONSTRUCT":l=function(t){return Object.assign(t,{[c]:!0})}(new n(...a));break;case"ENDPOINT":{const{port1:e,port2:n}=new MessageChannel;f(t,n),l=function(t,e){return A.set(t,e),t}(e,[e])}break;case"RELEASE":l=void 0;break;default:return}}catch(t){l={value:t,[d]:0}}Promise.resolve(l).catch((t=>({value:t,[d]:0}))).then((t=>{const[i,s]=S(t);e.postMessage(Object.assign(Object.assign({},i),{id:o}),s),"RELEASE"===r&&(e.removeEventListener("message",n),g(e))}))})),e.start&&e.start()}function g(t){(function(t){return"MessagePort"===t.constructor.name})(t)&&t.close()}function y(t,e){return v(t,[],e)}function b(t){if(t)throw new Error("Proxy has been released and is not useable")}function v(t,e=[],n=function(){}){let i=!1;const o=new Proxy(n,{get(n,r){if(b(i),r===u)return()=>E(t,{type:"RELEASE",path:e.map((t=>t.toString()))}).then((()=>{g(t),i=!0}));if("then"===r){if(0===e.length)return{then:()=>o};const n=E(t,{type:"GET",path:e.map((t=>t.toString()))}).then(x);return n.then.bind(n)}return v(t,[...e,r])},set(n,o,r){b(i);const[s,a]=S(r);return E(t,{type:"SET",path:[...e,o].map((t=>t.toString())),value:s},a).then(x)},apply(n,o,r){b(i);const s=e[e.length-1];if(s===h)return E(t,{type:"ENDPOINT"}).then(x);if("bind"===s)return v(t,e.slice(0,-1));const[a,l]=C(r);return E(t,{type:"APPLY",path:e.map((t=>t.toString())),argumentList:a},l).then(x)},construct(n,o){b(i);const[r,s]=C(o);return E(t,{type:"CONSTRUCT",path:e.map((t=>t.toString())),argumentList:r},s).then(x)}});return o}function w(t){return Array.prototype.concat.apply([],t)}function C(t){const e=t.map(S);return[e.map((t=>t[0])),w(e.map((t=>t[1])))]}const A=new WeakMap;function S(t){for(const[e,n]of m)if(n.canHandle(t)){const[i,o]=n.serialize(t);return[{type:"HANDLER",name:e,value:i},o]}return[{type:"RAW",value:t},A.get(t)||[]]}function x(t){switch(t.type){case"HANDLER":return m.get(t.name).deserialize(t.value);case"RAW":return t.value}}function E(t,e,n){return new Promise((i=>{const o=new Array(4).fill(0).map((()=>Math.floor(Math.random()*Number.MAX_SAFE_INTEGER).toString(16))).join("-");t.addEventListener("message",(function e(n){!n.data||!n.data.id||n.data.id!==o||(t.removeEventListener("message",e),i(n.data))})),t.start&&t.start(),t.postMessage(Object.assign({id:o},e),n)}))}const T="(function(){"use strict";const $=Symbol("Comlink.proxy"),A=Symbol("Comlink.endpoint"),R=Symbol("Comlink.releaseProxy"),y=Symbol("Comlink.thrown"),_=e=>typeof e=="object"&&e!==null||typeof e=="function",L={canHandle:e=>_(e)&&e[$],serialize(e){const{port1:r,port2:i}=new MessageChannel;return w(e,r),[i,[i]]},deserialize(e){return e.start(),C(e)}},O={canHandle:e=>_(e)&&y in e,serialize({value:e}){let r;return e instanceof Error?r={isError:!0,value:{message:e.message,name:e.name,stack:e.stack}}:r={isError:!1,value:e},[r,[]]},deserialize(e){throw e.isError?Object.assign(new Error(e.value.message),e.value):e.value}},E=new Map([["proxy",L],["throw",O]]);function w(e,r=self){r.addEventListener("message",function i(s){if(!s||!s.data)return;const{id:o,type:a,path:n}=Object.assign({path:[]},s.data),c=(s.data.argumentList||[]).map(m);let l;try{const u=n.slice(0,-1).reduce((d,p)=>d[p],e),f=n.reduce((d,p)=>d[p],e);switch(a){case"GET":l=f;break;case"SET":u[n.slice(-1)[0]]=m(s.data.value),l=!0;break;case"APPLY":l=f.apply(u,c);break;case"CONSTRUCT":{const d=new f(...c);l=z(d)}break;case"ENDPOINT":{const{port1:d,port2:p}=new MessageChannel;w(e,p),l=N(d,[d])}break;case"RELEASE":l=void 0;break;default:return}}catch(u){l={value:u,[y]:0}}Promise.resolve(l).catch(u=>({value:u,[y]:0})).then(u=>{const[f,d]=S(u);r.postMessage(Object.assign(Object.assign({},f),{id:o}),d),a==="RELEASE"&&(r.removeEventListener("message",i),M(r))})}),r.start&&r.start()}function T(e){return e.constructor.name==="MessagePort"}function M(e){T(e)&&e.close()}function C(e,r){return b(e,[],r)}function h(e){if(e)throw new Error("Proxy has been released and is not useable")}function b(e,r=[],i=function(){}){let s=!1;const o=new Proxy(i,{get(a,n){if(h(s),n===R)return()=>g(e,{type:"RELEASE",path:r.map(c=>c.toString())}).then(()=>{M(e),s=!0});if(n==="then"){if(r.length===0)return{then:()=>o};const c=g(e,{type:"GET",path:r.map(l=>l.toString())}).then(m);return c.then.bind(c)}return b(e,[...r,n])},set(a,n,c){h(s);const[l,u]=S(c);return g(e,{type:"SET",path:[...r,n].map(f=>f.toString()),value:l},u).then(m)},apply(a,n,c){h(s);const l=r[r.length-1];if(l===A)return g(e,{type:"ENDPOINT"}).then(m);if(l==="bind")return b(e,r.slice(0,-1));const[u,f]=F(c);return g(e,{type:"APPLY",path:r.map(d=>d.toString()),argumentList:u},f).then(m)},construct(a,n){h(s);const[c,l]=F(n);return g(e,{type:"CONSTRUCT",path:r.map(u=>u.toString()),argumentList:c},l).then(m)}});return o}function D(e){return Array.prototype.concat.apply([],e)}function F(e){const r=e.map(S);return[r.map(i=>i[0]),D(r.map(i=>i[1]))]}const P=new WeakMap;function N(e,r){return P.set(e,r),e}function z(e){return Object.assign(e,{[$]:!0})}function S(e){for(const[r,i]of E)if(i.canHandle(e)){const[s,o]=i.serialize(e);return[{type:"HANDLER",name:r,value:s},o]}return[{type:"RAW",value:e},P.get(e)||[]]}function m(e){switch(e.type){case"HANDLER":return E.get(e.name).deserialize(e.value);case"RAW":return e.value}}function g(e,r,i){return new Promise(s=>{const o=U();e.addEventListener("message",function a(n){!n.data||!n.data.id||n.data.id!==o||(e.removeEventListener("message",a),s(n.data))}),e.start&&e.start(),e.postMessage(Object.assign({id:o},r),i)})}function U(){return new Array(4).fill(0).map(()=>Math.floor(Math.random()*Number.MAX_SAFE_INTEGER).toString(16)).join("-")}const W=async()=>WebAssembly.validate(new Uint8Array([0,97,115,109,1,0,0,0,1,5,1,96,0,1,123,3,2,1,0,10,10,1,8,0,65,0,253,15,253,98,11])),k="eager",x="lazy",j={ssw:["simd"],minimap2:["simd"]},t={tools:[],config:{},files:[],base:{},fs:{},async init(){if(t.tools.length===0)throw"Expecting at least 1 tool.";if(new Set(t.tools.map(r=>`${r.tool}/${r.program||r.tool}`)).size!==t.tools.length)throw"Found duplicate tools; can only have each tool/program combination at most once.";if(t.base=t.tools.find(r=>r.reinit!==!0),!t.base)throw"Could not find a tool with `reinit: false` to use as the base module. To fix this issue, include the tool `base/1.0.0` when initializing Aioli.";return t.base.isBaseModule=!0,await this._setup(t.base),await this._initModules(),t._log("Ready"),!0},async _initModules(){await Promise.all(t.tools.map(this._setup)),await this._setupFS()},mount(e=[]){const r=`${t.config.dirShared}${t.config.dirData}`,i=`${t.config.dirShared}${t.config.dirMounted}`;let s=[],o=[],a=[];!Array.isArray(e)&&!(e instanceof FileList)&&(e=[e]),t._log(`Mounting ${e.length} files`);for(let n of e){if(n instanceof File||(n==null?void 0:n.data)instanceof Blob&&n.name||typeof(n==null?void 0:n.data)=="string"&&n.name)typeof(n==null?void 0:n.data)=="string"&&(n.data=new Blob([n.data],{type:"text/plain"})),s.push(n);else if(n.name&&n.url)o.push(n);else if(typeof n=="string"&&n.startsWith("http"))n={url:n,name:n.split("//").pop().replace(/\//g,"-")},o.push(n);else throw'Cannot mount file(s) specified. Must be a File, Blob, a URL string, or { name: "file.txt", data: "string" }.';a.push(n.name)}try{t.fs.unmount(i)}catch{}for(let n of o)t.fs.createLazyFile(r,n.name,n.url,!0,!0);return t.files=t.files.concat(s),t.base.module.FS.mount(t.base.module.WORKERFS,{files:t.files.filter(n=>n instanceof File),blobs:t.files.filter(n=>(n==null?void 0:n.data)instanceof Blob)},i),s.map(n=>{const c=`${i}/${n.name}`,l=`${r}/${n.name}`;try{t.fs.unlink(l)}catch{}t._log(`Creating symlink: ${l} --> ${c}`),t.fs.symlink(c,l)}),a.map(n=>`${r}/${n}`)},async exec(e,r=null){if(t._log(`Executing %c${e}%c args=${r}`,"color:darkblue; font-weight:bold",""),!e)throw"Expecting a command";let i=e;r==null&&(r=e.split(" "),i=r.shift());const s=t.tools.find(a=>{var c;let n=i;return((c=a==null?void 0:a.features)==null?void 0:c.simd)===!0&&(n=`${n}-simd`),a.program==n});if(s==null)throw`Program ${i} not found.`;s.stdout="",s.stderr="",s.loading==x&&(s.loading=k,await this._initModules());try{s.module.callMain(r)}catch(a){console.error(a)}try{s.module.FS.close(s.module.FS.streams[1]),s.module.FS.close(s.module.FS.streams[2])}catch{}s.module.FS.streams[1]=s.module.FS.open("/dev/stdout","w"),s.module.FS.streams[2]=s.module.FS.open("/dev/stderr","w");let o={stdout:s.stdout,stderr:s.stderr};return t.config.printInterleaved&&(o=s.stdout),s.reinit===!0&&await this.reinit(s.tool),o},cat(e){return t._fileop("cat",e)},ls(e){return t._fileop("ls",e)},download(e){return t._fileop("download",e)},pwd(){return t.fs.cwd()},cd(e){for(let r of t.tools)!r.module||r.module.FS.chdir(e)},mkdir(e){return t.fs.mkdir(e),!0},read({path:e,length:r,flag:i="r",offset:s=0,position:o=0}){const a=t.fs.open(e,i),n=new Uint8Array(r);return t.fs.read(a,n,s,r,o),t.fs.close(a),n},write({path:e,buffer:r,flag:i="w+",offset:s=0,position:o=0}){const a=t.fs.open(e,i);t.fs.write(a,r,s,r.length,o),t.fs.close(a)},async reinit(e){const r=t.tools.find(s=>s.tool==e),i=t.base.module.FS.cwd();Object.assign(r,r.config),r.ready=!1,await this.init(),r.isBaseModule&&this.mount(),this.cd(i)},_stdinTxt:"",_stdinPtr:0,get stdin(){return t._stdinTxt},set stdin(e=""){t._log(`Setting stdin to %c${e}%c`,"color:darkblue",""),t._stdinTxt=e,t._stdinPtr=0},async _setup(e){if(e.ready)return;if(t._log(`Setting up ${e.tool} (base = ${e.isBaseModule===!0})...`),e.config=Object.assign({},e),e.urlPrefix||(e.urlPrefix=`${t.config.urlCDN}/${e.tool}/${e.version}`),e.program||(e.program=e.tool),e.features||(e.features={},(j[e.program]||[]).includes("simd")&&(await W()?(e.program+="-simd",e.features.simd=!0):t._log(`WebAssembly SIMD is not supported in this browser; will load non-SIMD version of ${e.program}.`))),e.isBaseModule&&(e.loading=k),e.loading===x){t._log(`Will lazy-load ${e.tool}; skipping initialization.`);return}self.importScripts(`${e.urlPrefix}/${e.program}.js`),e.module=await Module({thisProgram:e.program,locateFile:(i,s)=>`${e.urlPrefix}/${i}`,stdin:()=>t._stdinPtr<t.stdin.length?t.stdin.charCodeAt(t._stdinPtr++):(t.stdin="",null),print:i=>{t.config.printStream?postMessage({type:"biowasm",value:{stdout:i}}):e.stdout+=i+`
`},printErr:i=>{const s=t.config.printInterleaved?"stdout":"stderr";t.config.printStream?postMessage({type:"biowasm",value:{[s]:i}}):e[s]+=i+`
`}});const r=e.module.FS;e.isBaseModule?(t._log(`Setting up ${e.tool} with base module filesystem...`),r.mkdir(t.config.dirShared,511),r.mkdir(`${t.config.dirShared}/${t.config.dirData}`,511),r.mkdir(`${t.config.dirShared}/${t.config.dirMounted}`,511),r.chdir(`${t.config.dirShared}/${t.config.dirData}`),t.fs=r):(t._log(`Setting up ${e.tool} with filesystem...`),r.mkdir(t.config.dirShared),r.mount(e.module.PROXYFS,{root:t.config.dirShared,fs:t.fs},t.config.dirShared),r.chdir(t.fs.cwd())),e.stdout="",e.stderr="",e.ready=!0},async _setupFS(){const e=t.fs;for(let r of t.tools){if(!r.ready)continue;const i=r.module.FS,s=`/${r.tool}`,o=`${t.config.dirShared}${s}`;!i.analyzePath(s).exists||e.analyzePath(o).exists||(t._log(`Mounting ${s} onto ${t.base.tool} filesystem at ${o}`),e.mkdir(o),e.mount(t.base.module.PROXYFS,{root:s,fs:i},o))}},_fileop(e,r){t._log(`Running ${e} ${r}`);const i=t.fs.analyzePath(r);if(!i.exists)return t._log(`File ${r} not found.`),!1;switch(e){case"cat":return t.fs.readFile(r,{encoding:"utf8"});case"ls":return t.fs.isFile(i.object.mode)?t.fs.stat(r):t.fs.readdir(r);case"download":const s=new Blob([this.cat(r)]);return URL.createObjectURL(s)}return!1},_log(e){if(!t.config.debug)return;let r=[...arguments];r.shift(),console.log(`%c[WebWorker]%c ${e}`,"font-weight:bold","",...r)}};w(t)})();
",_=typeof window<"u"&&window.Blob&&new Blob([atob(T)],{type:"text/javascript;charset=utf-8"});function M(){const t=_&&(window.URL||window.webkitURL).createObjectURL(_);try{return t?new Worker(t):new Worker("data:application/javascript;base64,"+T)}finally{t&&(window.URL||window.webkitURL).revokeObjectURL(t)}}const I={urlCDN:"https://biowasm.com/cdn/v3",urlCDNStg:"https://stg.biowasm.com/cdn/v3",dirShared:"/shared",dirMounted:"/mnt",dirData:"/data",printInterleaved:!0,printStream:!1,callback:null,debug:!1,env:"prd"};class L{constructor(t,e={}){if(null==t)throw"Expecting array of tools as input to Aioli constructor.";return Array.isArray(t)||(t=[t]),e=Object.assign({},I,e),t=t.map(this._parseTool),"stg"===e.env&&(e.urlCDN=e.urlCDNStg),this.tools=t,this.config=e,null!=this.config.callback&&(this.callback=this.config.callback),delete this.config.callback,this.init()}async init(){const t=new M;this.callback&&(t.onmessage=t=>{"biowasm"===t.data.type&&this.callback(t.data.value)});const e=y(t);return e.tools=this.tools,e.config=this.config,await e.init(),e}_parseTool(t){if("string"!=typeof t)return t;const e=t.split("/");if(2!=e.length&&3!=e.length)throw"Expecting '<tool>/<version>' or '<tool>/<program>/<version>'";return{tool:e[0],program:3==e.length?e[1]:e[0],version:e[e.length-1]}}}var N=n(3629);class P{static getAvailableScales(){return Object.entries(this.scales).map((([t,e])=>t))}static getScale(t){return(0,N.vA)(!(void 0===this.scales[t]),`Scale '${t}' was not found.`),this.scales[t]}}P.scales={WimleyWhite:{"-":0,A:.17,C:-.24,D:-.07,E:-.01,F:-1.13,G:.01,H:.17,I:-.31,K:.99,L:-.56,M:-.23,N:.42,P:.45,Q:.58,R:.81,S:.13,T:.14,V:.07,W:-1.85,Y:-.94},categorial:{"-":0,A:1,C:2,D:3,E:4,F:5,G:6,H:7,I:8,K:9,L:10,M:11,N:12,P:13,Q:14,R:15,S:16,T:17,V:18,W:19,Y:20}};class ${constructor(t="categorial"){this.aa2num=P.getScale(t),this.num2aa={},Object.entries(this.aa2num).forEach((([t,e])=>this.num2aa[e]=t))}static _truncateSequence(t){let e=0,n=t.length;const i=["NH2","COOH"];if(t.startsWith(i[0])){const n=i[0].length;(0,N.vA)("-"==t[n],`Wrong sequence format: ${i[0]} without following '-' in '${t}'.`),e=n}if(t.endsWith(i[1])){const e=i[1].length+1;(0,N.vA)("-"==t[n-e],`Wrong sequence format: ${i[1]} without '-' precending in '${t}'.`),n-=e}return t.substring(e,n)}static _dropDefises(t){return t.replace(/(-)([^-]+)/g,"$2")}static clean(t){return $._dropDefises($._truncateSequence(t))}encode(t){const e=t.length,n=new Array(e).fill(0);for(let i=0;i<e;++i){const e=t[i];(0,N.vA)(e in this.aa2num,`Unknown char '${e}' found in sequence '${t}'`),n[i]=this.encodeLettter(e)}return n}encodeLettter(t){return this.aa2num[t]}decode(t){let e="";for(let n=0;n<t.length;++n){const i=t[n];(0,N.vA)(i in this.num2aa,`Unknown code '${i}' found in vector '${t}'`),e+=this.num2aa[i]}return e}}var R=n(4139);const k="input.fa",O="result.fasta";class H extends Error{element;constructor(t,e){super(t.innerText,e),this.element=t}}function G(t){return t.reduce(((t,e,n)=>t+`>sample${n+1}\n${e}\n`),"")}async function F(t,e=!1,n="",i=null,r,s,c){let h=t.toList();e&&(h=h.map((t=>$.clean(t).replace(/\-/g,""))));const u=t.length;i??=o.Column.string("Clusters",u).init("0"),i.type!=o.COLUMN_TYPE.STRING&&(i=i.convertTo(o.TYPE.STRING)),i.compact();const d=i.categories,p=i.getRawData(),m=new Array(d.length),f=new Array(d.length);for(let t=0;t<u;++t){const e=p[t];(m[e]??=[]).push(h[t]),(f[e]??=[]).push(t)}B(f,d);const g=await new L(["base/1.0.0",{tool:"kalign",version:R.b9,reinit:!0}]),y=o.Column.string(n,u);for(let t=0;t<d.length;++t){const e=G(m[t]);await g.fs.writeFile(k,e);const n=`${void 0!==r?` --gpo ${r}`:""}${void 0!==s?` --gpe ${s}`:""}${void 0!==c?` --tgpe ${c}`:""}`,i=await g.exec(`kalign ${k} -f fasta -o ${O}${n}`);console.warn(i);const o=await g.cat(O);if(!o){const t=D(i,1);throw new Error(t)}const l=new a.m(o).sequencesArray,h=f[t];for(let t=0;t<l.length;++t)y.set(h[t],l[t])}const b=t.meta.units,v=t.getTag(l.gp.alphabet);return y.meta.units=b,y.setTag(l.gp.aligned,"SEQ.MSA"),y.setTag(l.gp.alphabet,v),y.semType=o.SEMTYPE.MACROMOLECULE,y}function D(t,e){const n=[],i=/^.+ERROR : (.+)$/gm;let o;for(;null!=(o=i.exec(t))&&(void 0===e||n.length<e);)n.push(o[1]);return n.join("\n")}function B(t,e){const n=t.map(((t,e)=>[t,e])).filter((([t,e])=>1==t.length)).map((([t,e])=>e));if(n.length>0){const t=i.div([i.divText(`MSA analysis is not available on single sequence clusters #${n.length}:`),...s()(n).take(3).map((t=>{let o=e[t];return o.length>25&&(o=o.slice(0,25)+"..."),i.divText(`"${o}"${t<n.length-1?", ":"."}`)})).toArray(),...n.length>3?[i.divText("...")]:[]]);throw new H(t)}}},8152:(t,e,n)=>{"use strict";n.d(e,{GD:()=>d,ZY:()=>h});var i=n(4328),o=n(6082),r=n(2003),s=n(608),a=n(4139),l=n(6723);const c=new class{dcName="bio";async getDockerContainer(){return await i.dapi.docker.dockerContainers.filter(this.dcName).first()}},h=["mafft --auto","mafft","linsi","ginsi","einsi","fftns","fftnsi","nwns","nwnsi"],u=["AlignedSeq","AlignedSubpeptide","HELM","ID","PolymerID"];async function d(t,e,n="ginsi",i=1.53,l=0,h=null,d){const m=await c.getDockerContainer(),f=t.length;h??=o.Column.int("Clusters",f).init(0),h.type!=o.COLUMN_TYPE.STRING&&(h=h.convertTo(o.TYPE.STRING));const g=h.categories,y=h.getRawData(),b=new Array(g.length),v=new Array(g.length);for(let e=0;e<f;++e){const n=y[e],i=g[n];if(""===i)continue;const o=g.indexOf(i),r=t.get(e);r&&((b[o]??=[]).push({ID:e.toString(),HELM:r}),(v[n]??=[]).push(e))}(0,s.aZ)(v,g);const w=new Array(f);for(const t of b){const e=(await p(m.id,t,n,i,l,d)).Alignment;for(const t of e)w[parseInt(t.ID)]=Object.entries(t).filter((t=>!u.includes(t[0]))).map((t=>"-"!==t[1]?t[1]:"")).join(a.J.SEPARATOR)}const C=o.Column.fromStrings(e,w);return C.meta.units=r.Hi.SEPARATOR,C.setTag(r.gp.separator,a.J.SEPARATOR),C.setTag(r.gp.aligned,"SEQ.MSA"),C.setTag(r.gp.alphabet,r.YI.UN),C.setTag(r.gp.alphabetIsMultichar,"true"),C.semType=o.SEMTYPE.MACROMOLECULE,C}async function p(t,e,n,o,r,s){const a={method:"POST",headers:{Accept:"application/json","Content-Type":"application/json"},body:JSON.stringify(e)},c=`/align?method=${n}&gap_open=${o}&gap_extend=${r}`,h=window.performance.now(),u=await i.dapi.docker.dockerContainers.fetchProxy(t,c,a),d=window.performance.now();l._package.logger.debug(`Bio: requestAlignedObjects() dockerContainers.fetchProxy(), ET: ${d-h} ms`);const p="application/json"===u.headers.get("content-type");if(!u.ok&&p){const t=await u.json(),e=t["pepsea-error"];if(e)throw new Error(`PepSeA error: ${e}`);const n=t["datagrok-error"];if(n)throw new Error(`Datagrok error: ${n}`);throw new Error(u.statusText)}if(!u.ok&&!p){const t=await u.text();throw new Error(`Error: ${t}`)}if(!p){const t=await u.text();throw new Error(`Error: PepSeA expected JSON response, got '${t}'.`)}const m=await u.json();if("pepsea-stderr"in m){const t=m["pepsea-stderr"];s?.warning(t)}return m}},3890:(t,e,n)=>{"use strict";n.d(e,{TE:()=>h});var i=n(6082),o=n(7389),r=n(4328),s=n(1991),a=n.n(s),l=n(6723);const c=60;function h(){const t=r.shell.tv.grid,e=a().count(0).take(t.columns.length).map((e=>t.columns.byIndex(e))).filter((t=>!!t.column&&t.column.semType!==i.SEMTYPE.MACROMOLECULE)).toArray(),n=e.find((t=>-1!==t.name.toLowerCase().indexOf("id"))),s=n?[n.name]:[],h=o.input.multiChoice("Seq id columns",{value:s,items:e.map((t=>t.name))}),d=a().count(0).take(t.columns.length).map((e=>t.columns.byIndex(e))).filter((t=>{const e=t.column;return!(!e||e.semType!==i.SEMTYPE.MACROMOLECULE)&&l._package.seqHelper.getSeqHandler(e).isFasta()})).toArray(),p=d.length>0?d[0].name:[],m=o.input.choice("Seq column",{value:p,items:d.map((t=>t.name))}),f=o.input.int("FASTA line width",{value:c});o.dialog({title:"Save as FASTA"}).add(o.inputs([h,m,f])).onOK((()=>{const e=h.value?h.value.map((e=>t.columns.byName(e).column)):[],n=m.value?t.columns.byName(m.value).column:null,i=f.value??c;n||r.shell.warning("Seq column is mandatory to save as FASTA.");const o=function(t,e,n=c,i="\n"){const o=[];for(let r=0;r<e.length;r++){const s=t.map((t=>t.get(r).toString())).join("|"),a=u(e.getSplitted(r),n);o.push(`>${s}${i}`);for(const t of a)o.push(`${t}${i}`)}return"".concat(...o)}(e,l._package.seqHelper.getSeqHandler(n),i),s=document.createElement("a");s.setAttribute("href",`data:text/plain;charset=utf-8,${encodeURIComponent(o)}`),s.setAttribute("download",`${t.dataFrame.name}.fasta`),s.click()})).show()}function u(t,e=c){let n=0;const i=t.length,o=[];for(;n<i;){const i=a().count(n).take(Math.min(t.length-n,e)).map((e=>t.getOriginal(e))).toArray(),r=i.map((t=>t.length>1?`[${t}]`:t)).reduce(((t,e)=>t+e),"");o.push(r),n+=i.length}return o}},8754:(t,e,n)=>{"use strict";n.d(e,{V:()=>h});var i=n(4328),o=n(6077),r=n(2003),s=n(8312),a=n(5553),l=n(966),c=n(330);async function h(t,e,n,h,u,d,p){let m;if(n){const n=await(0,s.Q)(),i=n.getSeqHandler(e);let o,a;i.isHelm()?o=e:(a=e.name,e.name=`__${a}`,o=i.convert(r.Hi.HELM),o.name=a,t.columns.add(o,!1));try{m=await n.helmToAtomicLevel(o,!0,!0,u)}finally{o!==e&&(t.columns.remove(o.name),e.name=a)}}else{if(!(0,l.l)(e,"To Atomic Level",d)[0])return{molCol:null,warnings:["Column is not suitable"]};m=await(0,o.C4)(t,e,u,d,p)}if(m.molCol){const o=(0,c.qj)(t,e.name);m.molCol.name=o,t.columns.add(m.molCol,!0),await(0,a.Qc)(e,m.molCol,u,d,p,n),m.molCol.setTag(".sequence-src-highlight-monomers",String(h)),await i.data.detectSemanticTypes(t)}return m}},4870:(t,e,n)=>{"use strict";n.d(e,{Kd:()=>a,Ku:()=>s,me:()=>r});var i=n(4328),o=n(6082);function r(){const t=i.shell.t.columns.bySemTypeAll(o.SEMTYPE.MACROMOLECULE);return null===t?(i.shell.error("Current table does not contain macromolecules"),[]):t}function s(t,e){t.innerHTML="",t.append(e)}function a(t,e,n,i,o){const r=()=>{const o=t.col(e);o&&(o.width=n),i&&(t.props.rowHeight=i)};if(o)return void r();const s=t.onAfterDrawOverlay.subscribe((()=>{s.unsubscribe(),setTimeout((()=>{r()}))}))}},250:(t,e,n)=>{"use strict";n.d(e,{n5:()=>C,oP:()=>M});var i=n(4328),o=n(7389),r=n(6082),s=n(1757),a=n.n(s),l=n(1991),c=n.n(l),h=n(1858),u=n(2003),d=n(4326);function p(t){var e;return"string"==typeof t||t instanceof String?t:("object"==typeof t||t instanceof Object)&&"$thrownJsError"in t?p(t.$thrownJsError):t instanceof Error?null!==(e=t.stack)&&void 0!==e?e:t.message:t.toString()}var m=n(8070),f=n(7602),g=n(439),y=n(6882);var b=n(6723);function v(t,e,n){return Math.abs(t-e)<=n}var w,C,A=n(6307);HTMLCanvasElement.prototype.getCursorPosition=function(t,e){const n=this.getBoundingClientRect();return new r.Point((t.clientX-n.left)*e,(t.clientY-n.top)*e)},r.Rect.prototype.contains=function(t,e){return this.left<=t&&t<=this.right&&this.top<=e&&e<=this.bottom};class S{rowCount;value;plotValue;valueList=null;valueIdx=0;bounds;constructor(t=0,e){this.value=this.rowCount=t,this.bounds=e}push(t){this.valueList||(this.valueList=new Array(this.rowCount),this.valueIdx=0),this.valueList[this.valueIdx]=t,++this.valueIdx}aggregate(t){this.value=t(this.valueList)??0,this.valueList=null}}class x{pos;name;_label;get label(){return this._label?this._label:this.name}_freqs;sumRowCount=0;sumPlotValue;sumPlotValueForHeight;constructor(t,e,n,i){this.pos=t,this.name=e,this._freqs=n??{},i?.sumRowCount&&(this.sumRowCount=i.sumRowCount),i?.sumValueForHeight&&(this.sumPlotValue=i.sumValueForHeight),i?.label&&(this._label=i.label)}getMonomers(){return Object.keys(this._freqs)}hasMonomer(t){return t in this._freqs}getFreq(t){let e=this._freqs[t];return e||(e=this._freqs[t]=new S),e}aggregate(t){const e=function(t){return e=>{const n=function(t){let e;const n="agg";return e=t instanceof Float32Array?r.Column.fromFloat32Array(n,t):t instanceof Int32Array?r.Column.fromInt32Array(n,t):r.Column.fromList(r.COLUMN_TYPE.FLOAT,n,t),e}(e);return n.aggregate(t)}}(t);for(const[t,n]of Object.entries(this._freqs))n.aggregate(e)}getMinValue(){return Math.min(...Object.values(this._freqs).map((t=>t.value)))}calcPlotValue(t){for(const e of Object.values(this._freqs))e.plotValue=e.value-t}calcHeights(t){this.sumPlotValue=0;for(const t of Object.values(this._freqs))this.sumPlotValue+=t.plotValue;if(this.sumPlotValueForHeight=0,t===d.fH.Entropy){const t=Object.keys(this._freqs).length,e=.01*this.sumPlotValue,n=e/t;for(const t of Object.values(this._freqs)){const i=(t.plotValue+n)/(this.sumPlotValue+e);this.sumPlotValueForHeight+=-i*Math.log2(i)}}else if(t===d.fH.full)for(const[t,e]of Object.entries(this._freqs)){const t=e.plotValue/this.sumPlotValue;this.sumPlotValueForHeight+=t}}calcScreen(t,e,n,i,o,s,a,l,c){const h=i===d.fH.Entropy?n*(o-this.sumPlotValueForHeight)/o:n;let u=c*l+(n-h-1);const p=Object.entries(this._freqs).sort(((t,e)=>t[0]!==g._S&&e[0]!==g._S?e[1].value-t[1].value:t[0]===g._S&&e[0]===g._S?0:t[0]===g._S?-1:1));for(const[n,i]of p){const n=h*i.plotValue/this.sumPlotValue;i.bounds=new r.Rect((t-e)*l*s,u,a*l,n),u+=n}}render(t,e,n,i,o,r,s){for(const[a,l]of Object.entries(this._freqs))if(a!==g._S){const c=(0,u.zS)(a,s),h=l.bounds,d=h.left;let p=y.S$;r&&(p=r.getMonomerTextColor(o,a)),t.resetTransform(),t.strokeStyle="lightgray",t.lineWidth=1,t.rect(d,h.top,h.width,h.height),t.fillStyle=p,t.textAlign="left",t.font=e;const m=t.measureText(c);t.setTransform(h.width/m.width,0,0,h.height/i,d,h.top),t.fillText(c,0,-n)}}getMonomerAt(t,e){const n=Object.entries(this._freqs).find((([n,i])=>i.bounds.contains(t,e)));return n?n[0]:void 0}buildCompositionTable(t,e){if("-"in this._freqs)throw new Error("Unexpected monomer symbol '-'.");return(0,A.F)(Object.assign({},...Object.entries(this._freqs).map((([t,e])=>({[t]:e.rowCount})))),t,e)}}!function(t){t.STYLE="Style",t.BEHAVIOR="Behavior",t.LAYOUT="Layout",t.DATA="Data"}(w||(w={})),function(t){t.sequenceColumnName="sequenceColumnName",t.valueAggrType="valueAggrType",t.valueColumnName="valueColumnName",t.startPositionName="startPositionName",t.endPositionName="endPositionName",t.skipEmptySequences="skipEmptySequences",t.skipEmptyPositions="skipEmptyPositions",t.shrinkEmptyTail="shrinkEmptyTail",t.backgroundColor="backgroundColor",t.positionHeight="positionHeight",t.positionWidth="positionWidth",t.verticalAlignment="verticalAlignment",t.horizontalAlignment="horizontalAlignment",t.fixWidth="fixWidth",t.fitArea="fitArea",t.minHeight="minHeight",t.maxHeight="maxHeight",t.maxMonomerLetters="maxMonomerLetters",t.showPositionLabels="showPositionLabels",t.positionMarginState="positionMarginState",t.positionMargin="positionMargin",t.filterSource="filterSource"}(C||(C={}));const E=d.Fo;var T;!function(t){t[t.None=0]="None",t[t.Render=1]="Render",t[t.Layout=1]="Layout",t[t.Freqs=2]="Freqs"}(T||(T={}));const _=new class{render=20};class M extends r.JsViewer{static residuesSet="nucleotides";viewed=!1;seqHelper;seqHandler;initialized=!1;monomerLib=null;host;msgHost;canvas;slider;textBaseline;seqCol=null;positions=[];visibleSlider=!1;allowResize=!0;turnOfResizeForOneSetValue=!1;sequenceColumnName;valueAggrType;valueColumnName;skipEmptySequences;skipEmptyPositions;positionWidth;_positionWidth;_positionWidthWithMargin;get positionWidthWithMargin(){return this._positionWidthWithMargin}minHeight;backgroundColor=4294967295;maxHeight;maxMonomerLetters;showPositionLabels;positionMarginState;positionMargin=0;_positionMargin;startPositionName;endPositionName;fixWidth;verticalAlignment;horizontalAlignment;fitArea;shrinkEmptyTail;positionHeight;filterSource;positionNames=[];positionLabels=void 0;startPosition=-1;endPosition=-1;error=null;get Length(){return this.skipEmptyPositions?this.positions.length:this.startPosition<=this.endPosition?this.endPosition-this.startPosition+1:0}get positionMarginValue(){return this.positionMarginState===d.mH.AUTO&&!0===this.seqHandler.getAlphabetIsMultichar()||this.positionMarginState===d.mH.ON?this.positionMargin:0}constructor(){super(),this.seqHelper=b._package.seqHelper,this.textBaseline="top",this.seqHandler=null,this.sequenceColumnName=this.string(C.sequenceColumnName,E.sequenceColumnName,{category:w.DATA,semType:r.SEMTYPE.MACROMOLECULE,description:"Column with sequences"});const t=[r.AGG.KEY,r.AGG.PIVOT,r.AGG.MISSING_VALUE_COUNT,r.AGG.SKEW,r.AGG.KURT,r.AGG.SELECTED_ROWS_COUNT],e=Object.values(r.AGG).filter((e=>!t.includes(e)));this.valueColumnName=this.string(C.valueColumnName,E.valueColumnName,{category:w.DATA,columnTypeFilter:"numerical",description:"Column with values used in aggregation for position heights"}),this.valueAggrType=this.string(C.valueAggrType,E.valueAggrType,{category:w.DATA,choices:e,description:"Aggregation method for value column"}),this.startPositionName=this.string(C.startPositionName,E.startPositionName,{category:w.DATA,description:"Position or column name for start position. If column with given name is found, its values will be used as start position. If number is supplied, it will be used as start position of WebLogo."}),this.endPositionName=this.string(C.endPositionName,E.endPositionName,{category:w.DATA,description:"Position or column name for end position. If column with given name is found, its values will be used as end position. If number is supplied, it will be used as end position of WebLogo."}),this.skipEmptySequences=this.bool(C.skipEmptySequences,E.skipEmptySequences,{category:w.DATA,description:"Skip sequences which are empty in all positions"}),this.skipEmptyPositions=this.bool(C.skipEmptyPositions,E.skipEmptyPositions,{category:w.DATA,description:"Skip positions which are empty in all sequences"}),this.shrinkEmptyTail=this.bool(C.shrinkEmptyTail,E.shrinkEmptyTail,{category:w.DATA,description:"Skip empty tail (if found for all sequences within a subset) in WebLogo"}),this.backgroundColor=this.int(C.backgroundColor,E.backgroundColor,{category:w.STYLE,description:"Background color of WebLogo canvas"}),this.positionHeight=this.string(C.positionHeight,E.positionHeight,{category:w.STYLE,choices:Object.values(d.fH),description:"Monomer-Position height mode. Entropy of 100%(full height)"}),this._positionWidth=this.positionWidth=this.float(C.positionWidth,E.positionWidth,{category:w.LAYOUT,editor:"slider",min:4,max:100,description:'Width of position in WebLogo. If "Fit Area" is enabled, width will be calculated to fit horizontal space'}),this.verticalAlignment=this.string(C.verticalAlignment,E.verticalAlignment,{category:w.LAYOUT,choices:Object.values(d.Lp)}),this.horizontalAlignment=this.string(C.horizontalAlignment,E.horizontalAlignment,{category:w.LAYOUT,choices:Object.values(d.P4)}),this.fixWidth=this.bool(C.fixWidth,E.fixWidth,{category:w.LAYOUT,userEditable:!1}),this.fitArea=this.bool(C.fitArea,E.fitArea,{category:w.LAYOUT,description:"Fit WebLogo to the horizontal space. Calculates position width as maximum between provided width value and value needed to fit whole horizontal space."}),this.minHeight=this.int(C.minHeight,E.minHeight,{category:w.LAYOUT,editor:"slider",min:10,max:250,description:"Minimum height of WebLogo"}),this.maxHeight=this.int(C.maxHeight,E.maxHeight,{category:w.LAYOUT,editor:"slider",min:25,max:Math.max(window.innerHeight??0,1e3),nullable:!0,description:"Maximum height of WebLogo"}),this.maxMonomerLetters=this.int(C.maxMonomerLetters,E.maxMonomerLetters,{category:w.LAYOUT,editor:"slider",min:1,max:40,description:"Maximum monomer letters to display before shortening"}),this.showPositionLabels=this.bool(C.showPositionLabels,E.showPositionLabels,{category:w.LAYOUT,description:"Show position labels on top of the weblogo"}),this.positionMarginState=this.string(C.positionMarginState,E.positionMarginState,{category:w.LAYOUT,choices:Object.values(d.mH),description:"Calculate optimal margins between positions or turn it on/off"});let n=0;"auto"===this.positionMarginState&&(n=4),this.positionMargin=this.int(C.positionMargin,n,{category:w.LAYOUT,min:0,max:25,description:"Margin between positions in WebLogo"}),this.filterSource=this.string(C.filterSource,E.filterSource,{category:w.BEHAVIOR,choices:Object.values(d.lT),description:"Data source for weblogo. Selected or filtered rows."}),this.slider=o.rangeSlider(0,100,0,20,!1,{style:"barbell"}),this.canvas=o.canvas(),this.canvas.classList.value="bio-wl-canvas",this.canvas.style.width="100%",(0,b.getMonomerLibHelper)().then((t=>{this.monomerLib=t.getMonomerLib(),this.render(T.Render,"monomerLib"),this.subs.push(this.monomerLib.onChanged.subscribe((()=>{this.render(T.Render,"monomerLib changed")})))})),this.viewSyncer=new f.g(b._package.logger)}static viewerCounter=-1;viewerId=++M.viewerCounter;toLog(){return`WebLogoViewer<${this.viewerId}>`}setData(){const t=`${this.toLog()}.setData()`;b._package.logger.debug(`${t}, in`),this.viewSyncer.sync(`${t}`,(async()=>{if(!this.setDataInProgress){this.setDataInProgress=!0;try{this.viewed&&(this.renderRequestSub.unsubscribe(),await this.destroyView(),this.viewed=!1),this.updateSeqCol(),this.updateEditors(),this.viewed||(await this.buildView(),this.viewed=!0)}finally{this.setDataInProgress=!1}}})),b._package.logger.debug(`${t}, out`)}viewSyncer;setDataInProgress=!1;viewSubs=[];async destroyView(){for(const t of this.viewSubs)t.unsubscribe();this.viewSubs=[];const t=this.dataFrame?"data":"null";b._package.logger.debug(`${this.toLog()}.destroyView( dataFrame = ${t} ) start`),this.host.remove(),this.msgHost=void 0,this.host=void 0,b._package.logger.debug(`${this.toLog()}.destroyView() end`)}async buildView(){const t=this.dataFrame?"data":"null";b._package.logger.debug(`${this.toLog()}.buildView( dataFrame = ${t} ) start`),window.devicePixelRatio,this.viewSubs.push(r.debounce(this.renderRequest,_.render).subscribe(this.renderRequestOnDebounce.bind(this))),this.helpUrl="/help/visualize/viewers/web-logo.md",this.msgHost=o.div("No message",{classes:"bio-wl-msg"}),this.msgHost.style.display="none",this.canvas=o.canvas(),this.canvas.style.width="100%",this.slider.root.style.position="absolute",this.slider.root.style.zIndex="999",this.slider.root.style.display="none",this.slider.root.style.height="0.7em",this.visibleSlider=!1,this.host=o.div([this.msgHost,this.canvas],{classes:"bio-wl-host",style:{display:"flex",flexDirection:"row",flexGrow:"0",flexWrap:"wrap"}}),this.root.append(this.host),this.root.append(this.slider.root),this.error&&(this.msgHost.innerText=this.error.message,o.tooltip.bind(this.msgHost,this.error.stack),this.msgHost.style.setProperty("display",null)),this.dataFrame&&(this.viewSubs.push(this.dataFrame.filter.onChanged.subscribe(this.dataFrameFilterOnChanged.bind(this))),this.viewSubs.push(this.dataFrame.selection.onChanged.subscribe(this.dataFrameSelectionOnChanged.bind(this)))),this.viewSubs.push(o.onSizeChanged(this.root).subscribe(this.rootOnSizeChanged.bind(this))),this.viewSubs.push(this.slider.onValuesChanged.subscribe(this.sliderOnValuesChanged.bind(this))),this.viewSubs.push((0,h.fromEvent)(this.canvas,"mousemove").subscribe(this.canvasOnMouseMove.bind(this))),this.viewSubs.push((0,h.fromEvent)(this.canvas,"mousedown").subscribe(this.canvasOnMouseDown.bind(this))),this.viewSubs.push((0,h.fromEvent)(this.canvas,"wheel").subscribe(this.canvasOnWheel.bind(this))),this.render(T.Freqs,"buildView"),b._package.logger.debug(`${this.toLog()}.buildView() end`)}lastSize={width:-1,height:-1};rootOnSizeChanged(t){const e={width:t.target.clientWidth,height:t.target.clientHeight};this.lastSize.width==e.width&&this.lastSize.height==e.height||(b._package.logger.debug(`${this.toLog()}.rootOnSizeChanged(), ${JSON.stringify(e)}, start `),this.render(T.Layout,"rootOnSizeChanged")),this.lastSize=e}updateEditors(){this.props.getProperty(C.valueColumnName).choices=c()(this.dataFrame.columns.numerical).map((t=>t.name)).toArray()}updateSeqCol(){if(this.dataFrame&&(this.seqCol=this.sequenceColumnName?this.dataFrame.col(this.sequenceColumnName):null,null==this.seqCol&&(this.seqCol=(0,u.mn)(this.dataFrame),this.sequenceColumnName=this.seqCol?this.seqCol.name:null),this.seqCol)){try{this.seqHandler=this.seqHelper.getSeqHandler(this.seqCol),this.render(T.Freqs,"updateSeqCol()"),this.error=null}catch(t){throw this.seqCol=null,this.error=t instanceof Error?t:new Error(t.toString()),t}this.seqCol||(this.seqHandler=null,this.positionNames=[],this.positionLabels=[],this.startPosition=-1,this.endPosition=-1)}}getFilter(){let t;switch(this.filterSource){case d.lT.Filtered:t=this.dataFrame.filter;break;case d.lT.Selected:t=0===this.dataFrame.selection.trueCount?this.dataFrame.filter:this.dataFrame.selection}return t}setSliderVisibility(t){t?(this.slider.root.style.display="inherit",this.visibleSlider=!0):(this.slider.root.style.display="none",this.visibleSlider=!1)}calcLayout(t){this.host&&this.canvas&&this.slider&&(this.host.classList.remove("bio-wl-fixWidth","bio-wl-fitArea"),this.canvas.classList.remove("bio-wl-fixWidth","bio-wl-fitArea"),this._positionWidth=this.positionWidth,this._positionMargin=this.positionMargin,this._positionWidthWithMargin=this._positionWidth+this.positionMarginValue,this.fixWidth?this.calcLayoutFixWidth(t):this.calcLayoutNoFitArea(t),this.slider.root.style.width=`${this.host.clientWidth}px`)}calcLayoutFixWidth(t){if(!this.host||!this.canvas||!this.slider)return;this.host.classList.add("bio-wl-fixWidth"),this.canvas.classList.add("bio-wl-fitArea");const e=this._positionWidthWithMargin*this.Length,n=Math.min(Math.max(this.minHeight,this.root.clientHeight),this.maxHeight??this.root.clientHeight);this.host.style.justifyContent=d.P4.LEFT,this.host.style.removeProperty("margin-left"),this.host.style.removeProperty("margin-top"),this.host.style.width=this.canvas.style.width=`${e}px`,this.host.style.height=this.canvas.style.height=`${n}px`,this.host.style.left=this.canvas.style.left="0",this.host.style.top=this.canvas.style.top="0",this.host.style.setProperty("overflow","hidden","important"),this.slider.root.style.display="none",this.slider.setValues(0,Math.max(0,this.Length-1),0,Math.max(0,this.Length-1)),this.canvas.width=e*t,this.canvas.height=n*t}calcLayoutNoFitArea(t){if(!this.host||!this.canvas||!this.slider)return;let e=this._positionWidthWithMargin*this.Length,n=Math.min(this.root.clientWidth,e);this.fitArea&&e<this.root.clientWidth&&(this._positionWidth=Math.floor(this._positionWidth*this.root.clientWidth/e),this._positionWidthWithMargin=this._positionWidth+this.positionMarginValue,e=this._positionWidthWithMargin*this.Length,n=Math.min(this.root.clientWidth,e));const i=Math.min(Math.max(this.minHeight,this.root.clientHeight),this.maxHeight??this.root.clientHeight);this.canvas.style.width=`${n}px`,this.canvas.style.height=`${i}px`,this.host.style.width=`${this.root.clientWidth}px`,this.host.style.height=`${this.root.clientHeight}px`,this.host.style.justifyContent=this.horizontalAlignment,this.host.style.alignContent=this.verticalAlignment===d.Lp.TOP?"start":this.verticalAlignment===d.Lp.MIDDLE?"center":this.verticalAlignment===d.Lp.BOTTOM?"end":"inherit",this.root.clientHeight<this.minHeight&&(this.host.style.alignContent="start",this.host.style.width=`${n+8}px`);const o=e>n;if(this.setSliderVisibility(o),o){this.slider.root.style.removeProperty("display"),this.host.style.justifyContent="left",this.host.style.height=this.root.clientHeight-this.slider.root.offsetHeight+"px",this.canvas.style.height=i-this.slider.root.offsetHeight+"px",this.slider.root.style.top=`${this.host.offsetHeight}px`;let t=Math.min(Math.max(0,this.slider.min),this.Length-.001),e=Math.min(Math.max(0,this.slider.max),this.Length-.001);const n=this.canvas.clientWidth/this._positionWidthWithMargin;e=Math.min(Math.max(t,0)+n,this.Length-.001),t=Math.max(0,Math.min(e,this.Length-.001)-n),this.safeUpdateSlider(0,Math.max(this.Length-.001),t,e)}else this.safeUpdateSlider(0,Math.max(0,this.Length-.001),0,Math.max(0,this.Length-.001));this.canvas.width=n*t,this.canvas.height=i*t}calcLayoutFitArea(t){if(!this.host||!this.canvas||!this.slider)return;const e=this._positionWidth*this.Length,n=Math.min(Math.max(this.minHeight,this.root.clientHeight),this.maxHeight??this.root.clientHeight),i=e>0?(this.root.clientWidth-this.positionMarginValue*this.Length)/e:0,o=this.root.clientHeight/n,r=Math.max(1,Math.min(i,o));this._positionWidth=this.positionWidth*r,this._positionWidthWithMargin=this._positionWidth+this.positionMarginValue;const s=(this._positionWidth+this.positionMarginValue)*this.Length,a=r*n,l=Math.min(this.root.clientWidth,s);this.canvas.style.width=`${l}px`,this.canvas.style.height=`${a}px`,this.host.style.width=`${l}px`,this.host.style.height=`${this.root.clientHeight}px`,this.host.style.justifyContent=this.horizontalAlignment,this.host.style.alignContent=this.verticalAlignment===d.Lp.TOP?"start":this.verticalAlignment===d.Lp.MIDDLE?"center":this.verticalAlignment===d.Lp.BOTTOM?"end":"inherit",this.root.clientHeight<this.minHeight&&(this.host.style.alignContent="start",this.host.style.width=`${l+6}px`),this.host.style.width=`${this.host}px`;const c=s>l;if(this.setSliderVisibility(c),c){this.slider.root.style.removeProperty("display"),this.host.style.justifyContent="left",this.host.style.height=this.root.clientHeight-this.slider.root.offsetHeight+"px",this.slider.root.style.top=`${this.host.offsetHeight}px`;let t=Math.min(Math.max(0,this.slider.min),this.Length-.001),e=Math.min(Math.max(0,this.slider.max),this.Length-.001);const n=this.root.clientWidth/this._positionWidthWithMargin;e=Math.min(Math.max(t,0)+n,this.Length-.001),t=Math.max(0,Math.min(e,this.Length-.001)-n),this.safeUpdateSlider(0,Math.max(0,this.Length-.001),t,e)}else this.safeUpdateSlider(0,Math.max(0,this.Length-.001),0,Math.max(0,this.Length-.001));this.canvas.width=l*t,this.canvas.height=a*t}safeUpdateSlider(t,e,n,i){v(t,this.slider.minRange,.1)&&v(e,this.slider.maxRange,.1)&&v(n,this.slider.min,.1)&&v(i,this.slider.max,.1)||this.slider.setValues(t,e,n,i)}onPropertyChanged(t){switch(super.onPropertyChanged(t),t.name){case C.sequenceColumnName:this.updateSeqCol();break;case C.sequenceColumnName:case C.startPositionName:case C.endPositionName:case C.filterSource:case C.shrinkEmptyTail:case C.skipEmptyPositions:case C.positionHeight:case C.valueColumnName:case C.valueAggrType:this.render(T.Freqs,`onPropertyChanged( ${t.name} )`);break;case C.minHeight:case C.maxHeight:case C.maxMonomerLetters:case C.positionWidth:case C.showPositionLabels:case C.fixWidth:case C.fitArea:case C.horizontalAlignment:case C.verticalAlignment:case C.positionMargin:case C.positionMarginState:this.render(T.Layout,`onPropertyChanged(${t.name})`);break;case C.backgroundColor:this.render(T.Render,`onPropertyChanged(${t.name})`)}}onTableAttached(){b._package.logger.debug(`${this.toLog()}.onTableAttached(), `),super.onTableAttached(),this.setData()}detach(){const t=`${this.toLog()}.detach()`;b._package.logger.debug(`${t}, in`);const e=super.detach.bind(this);this.viewSyncer.sync(`${t}`,(async()=>{this.setDataInProgress||(this.viewed&&(await this.destroyView(),this.viewed=!1),e())})),b._package.logger.debug(`${t}, out`)}_onSizeChanged=new h.Subject;get onSizeChanged(){return this._onSizeChanged}_onFreqsCalculated=new h.Subject;get onFreqsCalculated(){return this._onFreqsCalculated}_onLayoutCalculated=new h.Subject;get onLayoutCalculated(){return this._onLayoutCalculated}getMonomer(t,e){const n=t.x,i=Math.floor(t.x/(this._positionWidthWithMargin*e)+Math.floor(this.slider.min)),o=this.positions[i];if(!o)return[null,null,null];const r=o.getMonomerAt(n,t.y);return void 0===r?[o,null,null]:[o,r,o.getFreq(r)]}_nullSequence(t="X"){return this.skipEmptySequences?"":new Array(this.Length).fill(t).join("")}_removeEmptyPositions(){this.skipEmptyPositions&&(this.positions=c()(this.positions).filter((t=>!t.hasMonomer(g._S)||t.getFreq(g._S).rowCount!==t.sumRowCount)).toArray())}requestedRenderLevel=T.Freqs;renderRequest=new h.Subject;renderRequestSub;render(t,e){b._package.logger.debug(`${this.toLog()}.render( recalcLevelVal=${t}, reason='${e}' )`),this.requestedRenderLevel=Math.max(this.requestedRenderLevel,t),this.renderRequest.next(this.requestedRenderLevel)}async renderInt(t){if(b._package.logger.debug(`${this.toLog()}.render.renderInt( renderLevel=${t} ), start `),this.msgHost&&(this.msgHost.style.display="none"),!this.seqCol||!this.dataFrame||null==this.host||null==this.slider)return;const e=window.devicePixelRatio,n=this.showPositionLabels?12:0;if(t>=T.Freqs&&(()=>{if(b._package.logger.debug(`${this.toLog()}.render.calculateFreqsInt(), start `),!this.host||!this.seqCol||!this.dataFrame)return;const t=this.seqCol.getTag(u.gp.positionNames),e=this.seqCol.getTag(u.gp.positionLabels);let n;!t&&this.endPositionName&&/\d+/.test(this.endPositionName)?n=Number(this.endPositionName):t&&this.endPositionName&&(n=t.split(u.z1).indexOf(this.endPositionName),n=-1!==n?n:void 0);const i=this.getFilter(),o=0===i.trueCount?this.seqHandler.maxLength:c().count(0).take(this.seqHandler.length).map((t=>{const e=this.seqHandler.getSplitted(t,n);return i.get(t)&&e?e.length:0})).reduce(((t,e)=>Math.max(t,e)),0);this.positionNames=t?t.split(u.z1).map((t=>t.trim())):[...Array(o).keys()].map((t=>`${t+1}`)),this.positionLabels=e?e.split(u.z1).map((t=>t.trim())):void 0,this.startPosition=this.startPositionName&&this.positionNames&&this.positionNames.includes(this.startPositionName)?this.positionNames.indexOf(this.startPositionName):0,this.endPosition=this.endPositionName&&this.positionNames&&this.positionNames.includes(this.endPositionName)?this.positionNames.indexOf(this.endPositionName):o-1;const s=this.startPosition<=this.endPosition?this.endPosition-this.startPosition+1:0;this.seqHandler=this.seqHelper.getSeqHandler(this.seqCol);const a=this.startPosition<=this.endPosition?this.endPosition-this.startPosition+1:0;this.positions=new Array(a);for(let t=0;t<s;t++){const e=this.positionNames[this.startPosition+t],n=this.positionLabels?this.positionLabels[this.startPosition+t]:void 0;this.positions[t]=new x(this.startPosition+t,e,{},{label:n})}this.dataFrame.rowCount;const l=i.getSelectedIndexes();for(let t=0;t<s;++t){for(const e of l){const n=this.seqHandler.getSplitted(e),i=t+this.startPosition<n.length?n.getCanonical(this.startPosition+t):this.seqHandler.defaultGapOriginal,o=this.seqHandler.defaultGapOriginal===i?g._S:i,r=this.positions[t],s=r.getFreq(o);++r.sumRowCount,s.value=++s.rowCount}if(this.valueAggrType===r.AGG.TOTAL_COUNT)continue;let e=null;try{e=this.dataFrame.getCol(this.valueColumnName),e.matches("numerical")||(e=null)}catch{e=null}if(e){for(const n of l){const i=this.seqHandler.getSplitted(n),o=t+this.startPosition<i.length?i.getCanonical(this.startPosition+t):this.seqHandler.defaultGapOriginal,r=this.seqHandler.defaultGapOriginal===o?g._S:o,s=e.get(n);this.positions[t].getFreq(r).push(s)}this.positions[t].aggregate(this.valueAggrType)}}const h=this.valueAggrType===r.AGG.TOTAL_COUNT?0:Math.min(0,Math.min(...this.positions.map((t=>t.getMinValue()))));for(let t=0;t<s;++t)this.positions[t].calcPlotValue(h),this.positions[t].calcHeights(this.positionHeight);this._removeEmptyPositions(),this._onFreqsCalculated.next()})(),this.calcLayout(e),-1===this.startPosition)return;const o=Math.max(Math.floor(this.slider.min),0),s=Math.min(this.positions.length-1,Math.floor(this.slider.max));t>=T.Layout&&((t,e,n,o)=>{b._package.logger.debug(`${this.toLog()}.render.calculateLayoutInt(), start `);const s=this.canvas.height-o*n;let a;if(this.valueAggrType===r.AGG.TOTAL_COUNT){const t=this.seqHandler.getAlphabetSize();this.positionHeight==d.fH.Entropy&&null==t&&i.shell.error("WebLogo: alphabet is undefined."),a=Math.log2(t)}else a=Math.max(...c().count(t).takeWhile((t=>t<=e)).map((t=>this.positions[t].sumPlotValueForHeight)));for(let i=t;i<=e;++i)i in this.positions?this.positions[i].calcScreen(i,this.slider.min,s,this.positionHeight,a,this._positionWidthWithMargin,this._positionWidth,n,o):b._package.logger.warning(`${this.toLog()}.render.calculateLayoutInt() this.positions.length = ${this.positions.length}, jPos = ${i}`);b._package.logger.debug(`${this.toLog()}.render.calculateLayoutInt(), end `),this._onLayoutCalculated.next()})(o,s,window.devicePixelRatio,n);const a=this.canvas.getContext("2d");if(a){a.save();try{this.Length,a.resetTransform(),a.fillStyle=function(t){const e=r.Color.a(t);return`#${(16777215&t).toString(16).padStart(6,"0")}`+e.toString(16).padStart(2,"0")}(this.backgroundColor),a.fillRect(0,0,this.canvas.width,this.canvas.height),a.textBaseline=this.textBaseline;const t=10*e;a.resetTransform(),a.fillStyle="black",a.textAlign="center",a.font=`${t.toFixed(1)}px Roboto, Roboto Local, sans-serif`,n>0&&this.positions.length>0&&function(t,e,n,i,o,r,s,a){t.save();try{t.textAlign="center";let l=null,c=null;for(let e=Math.floor(s);e<=Math.floor(a);e++){const n=r[e],i=t.measureText(n.name),o=i.actualBoundingBoxDescent-i.actualBoundingBoxAscent;l=null===l?i.width:Math.max(l,i.width),c=null===c?o:Math.max(c,o)}const h=l<i*e-2?1:(i*e-2)/l;for(let l=Math.floor(s);l<=Math.floor(a);l++){const a=r[l],u=(l-s)*n*e+i*e/2,d=(o*e-c)/2;t.setTransform(h,0,0,1,u,d),t.measureText(a.label),t.fillText(a.label,0,0)}}finally{t.restore()}}(a,e,this._positionWidthWithMargin,this._positionWidth,n,this.positions,this.slider.min,this.slider.max);const i="16px Roboto, Roboto Local, sans-serif",l=.25,c=12.2,h=this.seqHandler.defaultBiotype;for(let t=o;t<=s;t++)this.positions[t].render(a,i,l,c,h,this.monomerLib,this.maxMonomerLetters)}finally{a.restore()}b._package.logger.debug(`${this.toLog()}.render.renderInt( recalcLevel=${t} ), end`)}}renderRequestOnDebounce(t){const e=`${this.toLog()}.renderRequestOnDebounce()`;"HTML"!==a()(this.root).offsetParent().get()[0]?.tagName?(this.requestedRenderLevel=T.None,this.viewSyncer.sync(e,(async()=>{await this.renderInt(t)}))):b._package.logger.warning(`${e}, $(this.root).offsetParent() is the 'HTML' tag.`)}_lastWidth;_lastHeight;sliderOnValuesChanged(t){try{const t={minRange:this.slider.minRange,min:this.slider.min,max:this.slider.max,maxRange:this.slider.maxRange};if(this.canvas&&this.canvas.offsetWidth>0&&(this._positionWidthWithMargin??0)>0){const e=t.max-t.min,n=this.canvas.offsetWidth/e-this.positionMarginValue;v(n,this.positionWidth,.1)?this.render(T.Layout,"sliderOnValuesChanged"):this.getProperty(C.positionWidth)?.set(this,n)}}catch(t){const e=p(t);b._package.logger.error(`${this.toLog()}.sliderOnValuesChanged() error:\n`+e)}}dataFrameFilterOnChanged(t){b._package.logger.debug(`${this.toLog()}.dataFrameFilterChanged()`);try{this.filterSource===d.lT.Filtered&&this.render(T.Freqs,"dataFrameFilterOnChanged")}catch(t){const e=p(t);b._package.logger.error(`${this.toLog()}.dataFrameFilterOnChanged() error:\n`+e)}}dataFrameSelectionOnChanged(t){b._package.logger.debug(`${this.toLog()}.dataFrameSelectionOnChanged()`);try{this.filterSource===d.lT.Selected&&this.render(T.Freqs,"dataFrameSelectionOnChanged")}catch(t){const e=p(t);b._package.logger.error(`${this.toLog()}.dataFrameSelectionOnChanged() error:\n`+e)}}canvasOnMouseMove(t){if(!this.monomerLib||!this.seqHandler)return;const e=window.devicePixelRatio;try{const n=t,i=this.canvas.getCursorPosition(n,e),[s,a]=this.getMonomer(i,e),l=this.showPositionLabels?12*e:0;if(null!==s&&null===a&&0<=i.y&&i.y<=l){const t=[o.divText(`Position ${s.label}`)];if(this.valueAggrType===r.AGG.TOTAL_COUNT){const e=this.seqHandler.defaultBiotype;t.push(s.buildCompositionTable(e,this.monomerLib))}const e=o.divV(t);e.style.maxHeight="80vh",o.tooltip.show(e,n.x+16,n.y+16)}else if(null!==s&&a&&this.dataFrame&&this.seqCol&&this.seqHandler){const t=s.getFreq(a),e=[o.div(`${a}`),o.div(`${t.rowCount} rows`)];this.valueAggrType!==r.AGG.TOTAL_COUNT&&e.push(o.div(`${this.valueAggrType}: ${t.value.toFixed(3)}`));const i=o.divV(e);o.tooltip.show(i,n.x+16,n.y+16)}else o.tooltip.hide()}catch(t){const e=p(t);b._package.logger.error(`${this.toLog()}.canvasOnMouseMove() error:\n`+e)}}canvasOnMouseDown(t){try{const e=t,n=window.devicePixelRatio,[i,o]=this.getMonomer(this.canvas.getCursorPosition(e,n),n);if(null!==i&&null!==o&&this.dataFrame&&this.seqCol&&this.seqHandler){const t=r.BitSet.create(this.dataFrame.selection.length,(t=>function(t,e,n,i,o,r){const s=e.getSplitted(i),a=r.pos<s.length?s.getCanonical(r.pos):null;return null!==a&&a===o}(this.dataFrame,this.seqHandler,this.getFilter(),t,o,i)));this.dataFrame.selection.init((e=>t.get(e)))}}catch(t){const e=p(t);b._package.logger.error(`${this.toLog()}.canvasOnMouseDown() error:\n`+e)}}canvasOnWheel(t){const e=window.devicePixelRatio;try{if(!this.visibleSlider)return;const n=this.canvas.width/(this._positionWidthWithMargin*e),i=t.deltaY/100*Math.max(Math.floor(n/5),1);this.slider.scrollBy(this.slider.min+i)}catch(t){const e=p(t);b._package.logger.error(`${this.toLog()}.canvasOnWheel() error:\n`+e)}}_onRendered=new h.Subject;get onRendered(){return this._onRendered}invalidate(t){const e=`invalidate(${t?` <- ${t} `:""})`,n=`${this.toLog()}.${e}`;this.render(T.None,e),this.viewSyncer.sync(`${n}`,(async()=>{this._onRendered.next()}))}async awaitRendered(t=5e3){await(0,m.PE)(this.onRendered,(()=>{}),(()=>{this.invalidate()}),t);const e=this.viewSyncer.resetErrors();if(e.length>0)throw e[0]}}},1687:(t,e,n)=>{"use strict";n.d(e,{_i:()=>x});var i=n(7389),o=n(6082),r=n(4328),s=n(1991),a=n.n(s),l=n(1858),c=n(2003),h=n(8070),u=n(7602),d=n(8115),p=n(4574),m=n(1757),f=n.n(m),g=n(9124),y=n(9192),b=n(4870),v=n(6723);class w extends p.O{seqHelper;emptyProps=new p.n("",void 0,v._package.logger);helmEditor;_filterPanel=i.div("",{style:{cursor:"pointer"}});logger;static viewerCounter=-1;viewerId=++w.viewerCounter;viewerToLog(){return`HelmBioFilter<${this.viewerId}>`}get type(){return"HelmBioFilter"}constructor(t){super(),this.seqHelper=t,this.logger=v._package.logger}viewSubs=[];async detach(){await super.detach();for(const t of this.viewSubs)t.unsubscribe()}async attach(){this.viewerToLog();try{const t=await(0,g.b2)();let e,n;this.helmEditor=t.createHelmWebEditor(),this.logger.warning("TEST: HelmBioFilter.init().sync() waitForElementInDom waiting..."),await i.tools.waitForElementInDom(this._filterPanel),this.logger.warning("TEST: HelmBioFilter.init().sync() waitForElementInDom ready"),this.updateFilterPanel(),this.viewSubs.push((0,l.fromEvent)(this._filterPanel,"click").subscribe((()=>{e=i.div(),n=t.createWebEditorApp(e,this.props.substructure),i.dialog({showHeader:!1,showFooter:!0}).add(e).onOK((()=>{try{const t=n.canvas.getHelm(!0).replace(/<\/span>/g,"").replace(/<span style='background:#bbf;'>/g,"");this.props=new p.n(t,void 0,v._package.logger)}catch(t){this.logger.error(t)}finally{f()(e).empty(),e=null,n=null}})).onCancel((()=>{f()(e).empty(),e=null,n=null})).show({modal:!0,fullScreen:!0})}))),this.viewSubs.push(i.onSizeChanged(this._filterPanel).subscribe((t=>{try{if(n){const t=n.canvas.getHelm(!0).replace(/<\/span>/g,"").replace(/<span style='background:#bbf;'>/g,"");this.updateFilterPanel(t)}}catch(t){const[e,n]=(0,y.AP)(t);this.logger.error(e,void 0,n)}})))}catch(t){const[e,n]=(0,y.AP)(t),o=this._filterPanel;o.innerText="error",o.classList.add("d4-error"),i.tooltip.bind(o,e)}}applyProps(){this.helmEditor&&this.updateFilterPanel(this.props.substructure)}get filterPanel(){return this._filterPanel}updateFilterPanel(t){if(!this.helmEditor)throw new Error("helmEditor is not created, the filter is not in dom yet");const e=this._filterPanel.parentElement.clientWidth<100?100:this._filterPanel.parentElement.clientWidth,n=e/2;if(t)(0,b.Ku)(this._filterPanel,this.helmEditor.host),this.helmEditor.editor.setHelm(t),this.helmEditor.resizeEditor(e,n);else{const t=i.divText("Click to edit","helm-substructure-filter");(0,b.Ku)(this._filterPanel,t)}}async substructureSearch(t){const e=`${this.viewerToLog()}.substructureSearch( column = <${t.name}> )`;v._package.logger.debug(`${e}, start`);try{return await(0,h.cb)(10),await(0,d.if)(this.props.substructure,t,this.seqHelper)}finally{v._package.logger.debug(`${e}, end`)}}}const C="bio-substructure-filter";class A{props;filterId;dataFrameId;columnName;bitset;constructor(t,e,n,i,o){this.props=t,this.filterId=e,this.dataFrameId=n,this.columnName=i,this.bitset=o}}class S extends p.n{separator;constructor(t,e,n){super(t,!1,n),this.separator=e,this.readOnly=!0}}class x extends o.Filter{seqHelper;logger;bioFilter=null;bitset=null;loader;notation=void 0;filterSyncer;get calculating(){return"initial"==this.loader.style.display}set calculating(t){this.loader.style.display=t?"initial":"none"}get filterSummary(){return this.bioFilter.filterSummary}get isFiltering(){return super.isFiltering&&(this.bioFilter?.isFiltering??!1)}get isReadyToApplyFilter(){return!this.calculating&&null!=this.bitset}get debounceTime(){if(null==this.column)return 1e3;const t=this.column.length;return t<500?0:t>1e4?1e3:Math.floor((t-500)/9500*1e3)}constructor(t,e){super(),this.seqHelper=t,this.logger=e,this.root=i.divV([]),this.loader=i.loader(),this.calculating=!1,this.filterSyncer=new u.g(this.logger)}static filterCounter=-1;filterId=++x.filterCounter;filterToLog(){return`BioSubstructureFilter<${this.filterId}>`}viewSubs=[];attach(t){const e=super.attach.bind(this),n=`${this.filterToLog()}.attach()`;this.filterSyncer.sync(n,(async()=>{e(t),this.column||(this.columnName?this.column=this.dataFrame.getCol(this.columnName):this.column=t.columns.bySemType(o.SEMTYPE.MACROMOLECULE)),this.seqHelper.getSeqHandler(this.column),this.columnName??=this.column?.name,this.notation??=this.column?.meta.units,this.bioFilter=this.notation===c.Hi.FASTA?new E:this.notation===c.Hi.SEPARATOR?new T(this.column.getTag(c.gp.separator)):new w(this.seqHelper),this.root.appendChild(this.bioFilter.filterPanel),this.root.appendChild(this.loader),await this.bioFilter.attach(),this.viewSubs.push(o.debounce(this.bioFilter.onChanged,this.debounceTime).subscribe(this.bioFilterOnChangedDebounced.bind(this))),this.viewSubs.push(r.events.onResetFilterRequest.subscribe(this.grokEventsOnResetFilterRequest.bind(this))),this.viewSubs.push(r.events.onCustomEvent(C).subscribe(this.filterOnSync.bind(this)))}))}detach(){const t=super.detach.bind(this),e=`${this.filterToLog()}.detach()`;this.filterSyncer.sync(e,(async()=>{for(const t of this.viewSubs)t.unsubscribe();this.viewSubs=[],t(),this.bioFilter&&this.bioFilter.detach(),this.bioFilter=null}))}filterOnSync(t){t.filterId!==this.filterId&&t.dataFrameId===this.dataFrame.id&&t.columnName===this.columnName&&(this.bioFilter.props=t.props)}applyFilter(){const t=`${this.filterToLog()}.applyFilter()`;this.logger.debug(`${t}, IN`),this.bitset&&!this.isDetached&&this.dataFrame?.filter.and(this.bitset)}saveState(){const t=`${this.filterToLog()}.saveState()`,e=super.saveState();return this.logger.debug(`${t}, super.state = ${JSON.stringify(e)}`),e.props=this.bioFilter.saveProps(),e}applyState(t){const e=`${this.filterToLog()}.applyState()`;super.applyState(t),this.filterSyncer.sync(e,(async()=>{t.props&&this.bioFilter&&(this.bioFilter.props=o.toJs(t.props??{}))}))}fireFilterSync(){const t=`${this.filterToLog()}.fireFilterSync()`;this.logger.debug(`${t}, bioFilter = ${this.bioFilter?this.bioFilter.constructor.name:"null"}`+(this.bioFilter?`, props = ${JSON.stringify(this.bioFilter.saveProps())}`:"")),r.events.fireCustomEvent(C,new A(this.bioFilter.props,this.filterId,this.dataFrame.id,this.columnName,this.bitset))}bioFilterOnChangedDebounced(){if(!this.dataFrame)return;const t=`${this.filterToLog()}.bioFilterOnChangedDebounced()`;if(this.logger.debug(`${t}, start, isFiltering = ${this.isFiltering}, props = ${JSON.stringify(this.bioFilter.saveProps())}`),!this.isFiltering)return this.bitset=null,void this.dataFrame.rows.requestFilter();a()(this.dataFrame.rows.filters).has(`${this.columnName}: ${this.filterSummary}`)||this.filterSyncer.sync(t,(async()=>{this.calculating=!0;try{this.logger.debug(`${t}, before substructureSearch`),this.bitset=await(this.bioFilter?.substructureSearch(this.column)),this.logger.debug(`${t}, after substructureSearch`),this.calculating=!1,this.fireFilterSync(),this.dataFrame?.rows.requestFilter()}finally{this.calculating=!1,this.logger.debug(`${t}, end`)}}))}grokEventsOnResetFilterRequest(){const t=`${this.filterToLog()}.grokEventsOnResetFilterRequest()`;this.logger.debug(`${t}`),this.bioFilter?.resetFilter()}_onRendered=new l.Subject;get onRendered(){return this._onRendered}invalidate(t){const e=`${this.filterToLog()}.invalidate(${t?` <- ${t} `:""})`;this.filterSyncer.sync(e,(async()=>{this._onRendered.next()}))}async awaitRendered(t=1e4){const e=`awaitRendered( ${t} )`,n=`${this.filterToLog()}.${e}`;await(0,h.cb)(10),await(0,h.PE)(this.onRendered,(()=>{this.logger.debug(`${n}, _onRendered event caught`)}),(()=>{this.invalidate(e)}),t,`${n} timeout`);const i=this.filterSyncer.resetErrors();if(i.length>0)throw i[0]}}class E extends p.O{emptyProps=new p.n("",void 0,v._package.logger);substructureInput;get type(){return"FastaBioFilter"}constructor(){super(),this.substructureInput=i.input.string("",{value:"",onValueChanged:t=>{window.setTimeout((()=>{this.props=new p.n(t,void 0,v._package.logger),this._propsChanging||this.onChanged.next()}),0)},placeholder:"Substructure"})}applyProps(){this.substructureInput.value!==this.props.substructure&&(this.substructureInput.value=this.props.substructure)}get filterPanel(){return this.substructureInput.root}get isFiltering(){return""!==this.substructureInput.value}async substructureSearch(t){return(0,d.nI)(this.props.substructure,t)}async attach(){}async detach(){await super.detach()}}class T extends p.O{emptyProps=new S("",void 0,v._package.logger);substructureInput;separatorInput;colSeparator="";get type(){return"SeparatorBioFilter"}constructor(t){super(),this.substructureInput=i.input.string("",{value:"",onValueChanged:t=>{this.props=new S(t,this.props.separator,v._package.logger),setTimeout((()=>{this._propsChanging||this.onChanged.next()}))},placeholder:"Substructure"}),this.separatorInput=i.input.string("",{value:this.colSeparator=t,onValueChanged:t=>{const e=t||"";this.props=new S(this.props.substructure,e,v._package.logger),setTimeout((()=>{this._propsChanging||this.onChanged.next()}))},placeholder:"Separator"})}applyProps(){this.substructureInput.value!==this.props.substructure&&(this.substructureInput.value=this.props.substructure);const t=this.props.separator??this.colSeparator;this.separatorInput.value!==t&&(this.separatorInput.value=t)}get filterSummary(){return this.props.separator?this.props.separator:this.colSeparator,`${this.props.substructure}, {sep}`}get isFiltering(){return""!==this.props.substructure}resetFilter(){this.props=new S("",void 0,v._package.logger)}get filterPanel(){return i.divV([this.substructureInput.root,this.separatorInput.root])}get substructure(){return this.separatorInput.value&&this.separatorInput.value!==this.colSeparator?this.substructureInput.value.replaceAll(this.separatorInput.value,this.colSeparator):this.substructureInput.value}set substructure(t){this.substructureInput.value=t}async substructureSearch(t){return(0,d.nI)(this.substructure,t,this.colSeparator)}async attach(){}async detach(){await super.detach()}}},1757:t=>{"use strict";t.exports=$},6082:t=>{"use strict";t.exports=DG},4328:t=>{"use strict";t.exports=grok},1858:t=>{"use strict";t.exports=rxjs},9713:t=>{"use strict";t.exports=rxjs.operators},7389:t=>{"use strict";t.exports=ui},1991:t=>{"use strict";t.exports=wu},8343:(t,e,n)=>{"use strict";const{normalizeIPv6:i,normalizeIPv4:o,removeDotSegments:r,recomposeAuthority:s,normalizeComponentEncoding:a}=n(4834),l=n(343);function c(t,e,n,i){const o={};return i||(t=p(h(t,n),n),e=p(h(e,n),n)),!(n=n||{}).tolerant&&e.scheme?(o.scheme=e.scheme,o.userinfo=e.userinfo,o.host=e.host,o.port=e.port,o.path=r(e.path||""),o.query=e.query):(void 0!==e.userinfo||void 0!==e.host||void 0!==e.port?(o.userinfo=e.userinfo,o.host=e.host,o.port=e.port,o.path=r(e.path||""),o.query=e.query):(e.path?("/"===e.path.charAt(0)?o.path=r(e.path):(void 0===t.userinfo&&void 0===t.host&&void 0===t.port||t.path?t.path?o.path=t.path.slice(0,t.path.lastIndexOf("/")+1)+e.path:o.path=e.path:o.path="/"+e.path,o.path=r(o.path)),o.query=e.query):(o.path=t.path,void 0!==e.query?o.query=e.query:o.query=t.query),o.userinfo=t.userinfo,o.host=t.host,o.port=t.port),o.scheme=t.scheme),o.fragment=e.fragment,o}function h(t,e){const n={host:t.host,scheme:t.scheme,userinfo:t.userinfo,port:t.port,path:t.path,query:t.query,nid:t.nid,nss:t.nss,uuid:t.uuid,fragment:t.fragment,reference:t.reference,resourceName:t.resourceName,secure:t.secure,error:""},i=Object.assign({},e),o=[],a=l[(i.scheme||n.scheme||"").toLowerCase()];a&&a.serialize&&a.serialize(n,i),void 0!==n.path&&(i.skipEscape?n.path=unescape(n.path):(n.path=escape(n.path),void 0!==n.scheme&&(n.path=n.path.split("%3A").join(":")))),"suffix"!==i.reference&&n.scheme&&o.push(n.scheme,":");const c=s(n);if(void 0!==c&&("suffix"!==i.reference&&o.push("//"),o.push(c),n.path&&"/"!==n.path.charAt(0)&&o.push("/")),void 0!==n.path){let t=n.path;i.absolutePath||a&&a.absolutePath||(t=r(t)),void 0===c&&(t=t.replace(/^\/\//u,"/%2F")),o.push(t)}return void 0!==n.query&&o.push("?",n.query),void 0!==n.fragment&&o.push("#",n.fragment),o.join("")}const u=Array.from({length:127},((t,e)=>/[^!"$&'()*+,\-.;=_`a-z{}~]/u.test(String.fromCharCode(e)))),d=/^(?:([^#/:?]+):)?(?:\/\/((?:([^#/?@]*)@)?(\[[^#/?\]]+\]|[^#/:?]*)(?::(\d*))?))?([^#?]*)(?:\?([^#]*))?(?:#((?:.|[\n\r])*))?/u;function p(t,e){const n=Object.assign({},e),r={scheme:void 0,userinfo:void 0,host:"",port:void 0,path:"",query:void 0,fragment:void 0},s=-1!==t.indexOf("%");let a=!1;"suffix"===n.reference&&(t=(n.scheme?n.scheme+":":"")+"//"+t);const c=t.match(d);if(c){if(r.scheme=c[1],r.userinfo=c[3],r.host=c[4],r.port=parseInt(c[5],10),r.path=c[6]||"",r.query=c[7],r.fragment=c[8],isNaN(r.port)&&(r.port=c[5]),r.host){const t=o(r.host);if(!1===t.isIPV4){const e=i(t.host);r.host=e.host.toLowerCase(),a=e.isIPV6}else r.host=t.host,a=!0}void 0!==r.scheme||void 0!==r.userinfo||void 0!==r.host||void 0!==r.port||void 0!==r.query||r.path?void 0===r.scheme?r.reference="relative":void 0===r.fragment?r.reference="absolute":r.reference="uri":r.reference="same-document",n.reference&&"suffix"!==n.reference&&n.reference!==r.reference&&(r.error=r.error||"URI is not a "+n.reference+" reference.");const t=l[(n.scheme||r.scheme||"").toLowerCase()];if(!(n.unicodeSupport||t&&t.unicodeSupport)&&r.host&&(n.domainHost||t&&t.domainHost)&&!1===a&&function(t){let e=0;for(let n=0,i=t.length;n<i;++n)if(e=t.charCodeAt(n),e>126||u[e])return!0;return!1}(r.host))try{r.host=URL.domainToASCII(r.host.toLowerCase())}catch(t){r.error=r.error||"Host's domain name can not be converted to ASCII: "+t}(!t||t&&!t.skipNormalize)&&(s&&void 0!==r.scheme&&(r.scheme=unescape(r.scheme)),s&&void 0!==r.host&&(r.host=unescape(r.host)),r.path&&(r.path=escape(unescape(r.path))),r.fragment&&(r.fragment=encodeURI(decodeURIComponent(r.fragment)))),t&&t.parse&&t.parse(r,n)}else r.error=r.error||"URI can not be parsed.";return r}const m={SCHEMES:l,normalize:function(t,e){return"string"==typeof t?t=h(p(t,e),e):"object"==typeof t&&(t=p(h(t,e),e)),t},resolve:function(t,e,n){const i=Object.assign({scheme:"null"},n);return h(c(p(t,i),p(e,i),i,!0),{...i,skipEscape:!0})},resolveComponents:c,equal:function(t,e,n){return"string"==typeof t?(t=unescape(t),t=h(a(p(t,n),!0),{...n,skipEscape:!0})):"object"==typeof t&&(t=h(a(t,!0),{...n,skipEscape:!0})),"string"==typeof e?(e=unescape(e),e=h(a(p(e,n),!0),{...n,skipEscape:!0})):"object"==typeof e&&(e=h(a(e,!0),{...n,skipEscape:!0})),t.toLowerCase()===e.toLowerCase()},serialize:h,parse:p};t.exports=m,t.exports.default=m,t.exports.fastUri=m},343:t=>{"use strict";const e=/^[\da-f]{8}-[\da-f]{4}-[\da-f]{4}-[\da-f]{4}-[\da-f]{12}$/iu,n=/([\da-z][\d\-a-z]{0,31}):((?:[\w!$'()*+,\-.:;=@]|%[\da-f]{2})+)/iu;function i(t){return"boolean"==typeof t.secure?t.secure:"wss"===String(t.scheme).toLowerCase()}function o(t){return t.host||(t.error=t.error||"HTTP URIs must have a host."),t}function r(t){const e="https"===String(t.scheme).toLowerCase();return t.port!==(e?443:80)&&""!==t.port||(t.port=void 0),t.path||(t.path="/"),t}const s={scheme:"http",domainHost:!0,parse:o,serialize:r},a={scheme:"ws",domainHost:!0,parse:function(t){return t.secure=i(t),t.resourceName=(t.path||"/")+(t.query?"?"+t.query:""),t.path=void 0,t.query=void 0,t},serialize:function(t){if(t.port!==(i(t)?443:80)&&""!==t.port||(t.port=void 0),"boolean"==typeof t.secure&&(t.scheme=t.secure?"wss":"ws",t.secure=void 0),t.resourceName){const[e,n]=t.resourceName.split("?");t.path=e&&"/"!==e?e:void 0,t.query=n,t.resourceName=void 0}return t.fragment=void 0,t}},l={http:s,https:{scheme:"https",domainHost:s.domainHost,parse:o,serialize:r},ws:a,wss:{scheme:"wss",domainHost:a.domainHost,parse:a.parse,serialize:a.serialize},urn:{scheme:"urn",parse:function(t,e){if(!t.path)return t.error="URN can not be parsed",t;const i=t.path.match(n);if(i){const n=e.scheme||t.scheme||"urn";t.nid=i[1].toLowerCase(),t.nss=i[2];const o=`${n}:${e.nid||t.nid}`,r=l[o];t.path=void 0,r&&(t=r.parse(t,e))}else t.error=t.error||"URN can not be parsed.";return t},serialize:function(t,e){const n=e.scheme||t.scheme||"urn",i=t.nid.toLowerCase(),o=`${n}:${e.nid||i}`,r=l[o];r&&(t=r.serialize(t,e));const s=t,a=t.nss;return s.path=`${i||e.nid}:${a}`,e.skipEscape=!0,s},skipNormalize:!0},"urn:uuid":{scheme:"urn:uuid",parse:function(t,n){const i=t;return i.uuid=i.nss,i.nss=void 0,n.tolerant||i.uuid&&e.test(i.uuid)||(i.error=i.error||"UUID is not valid."),i},serialize:function(t){const e=t;return e.nss=(t.uuid||"").toLowerCase(),e},skipNormalize:!0}};t.exports=l},4914:t=>{"use strict";t.exports={HEX:{0:0,1:1,2:2,3:3,4:4,5:5,6:6,7:7,8:8,9:9,a:10,A:10,b:11,B:11,c:12,C:12,d:13,D:13,e:14,E:14,f:15,F:15}}},4834:(t,e,n)=>{"use strict";const{HEX:i}=n(4914),o=/^(?:(?:25[0-5]|2[0-4]\d|1\d{2}|[1-9]\d|\d)\.){3}(?:25[0-5]|2[0-4]\d|1\d{2}|[1-9]\d|\d)$/u;function r(t){if(c(t,".")<3)return{host:t,isIPV4:!1};const e=t.match(o)||[],[n]=e;return n?{host:l(n,"."),isIPV4:!0}:{host:t,isIPV4:!1}}function s(t,e=!1){let n="",o=!0;for(const e of t){if(void 0===i[e])return;"0"!==e&&!0===o&&(o=!1),o||(n+=e)}return e&&0===n.length&&(n="0"),n}function a(t){if(c(t,":")<2)return{host:t,isIPV6:!1};const e=function(t){let e=0;const n={error:!1,address:"",zone:""},i=[],o=[];let r=!1,a=!1,l=!1;function c(){if(o.length){if(!1===r){const t=s(o);if(void 0===t)return n.error=!0,!1;i.push(t)}o.length=0}return!0}for(let s=0;s<t.length;s++){const h=t[s];if("["!==h&&"]"!==h)if(":"!==h)if("%"===h){if(!c())break;r=!0}else o.push(h);else{if(!0===a&&(l=!0),!c())break;if(e++,i.push(":"),e>7){n.error=!0;break}s-1>=0&&":"===t[s-1]&&(a=!0)}}return o.length&&(r?n.zone=o.join(""):l?i.push(o.join("")):i.push(s(o))),n.address=i.join(""),n}(t);if(e.error)return{host:t,isIPV6:!1};{let t=e.address,n=e.address;return e.zone&&(t+="%"+e.zone,n+="%25"+e.zone),{host:t,escapedHost:n,isIPV6:!0}}}function l(t,e){let n="",i=!0;const o=t.length;for(let r=0;r<o;r++){const s=t[r];"0"===s&&i?(r+1<=o&&t[r+1]===e||r+1===o)&&(n+=s,i=!1):(i=s===e,n+=s)}return n}function c(t,e){let n=0;for(let i=0;i<t.length;i++)t[i]===e&&n++;return n}const h=/^\.\.?\//u,u=/^\/\.(?:\/|$)/u,d=/^\/\.\.(?:\/|$)/u,p=/^\/?(?:.|\n)*?(?=\/|$)/u;t.exports={recomposeAuthority:function(t){const e=[];if(void 0!==t.userinfo&&(e.push(t.userinfo),e.push("@")),void 0!==t.host){let n=unescape(t.host);const i=r(n);if(i.isIPV4)n=i.host;else{const e=a(i.host);n=!0===e.isIPV6?`[${e.escapedHost}]`:t.host}e.push(n)}return"number"!=typeof t.port&&"string"!=typeof t.port||(e.push(":"),e.push(String(t.port))),e.length?e.join(""):void 0},normalizeComponentEncoding:function(t,e){const n=!0!==e?escape:unescape;return void 0!==t.scheme&&(t.scheme=n(t.scheme)),void 0!==t.userinfo&&(t.userinfo=n(t.userinfo)),void 0!==t.host&&(t.host=n(t.host)),void 0!==t.path&&(t.path=n(t.path)),void 0!==t.query&&(t.query=n(t.query)),void 0!==t.fragment&&(t.fragment=n(t.fragment)),t},removeDotSegments:function(t){const e=[];for(;t.length;)if(t.match(h))t=t.replace(h,"");else if(t.match(u))t=t.replace(u,"/");else if(t.match(d))t=t.replace(d,"/"),e.pop();else if("."===t||".."===t)t="";else{const n=t.match(p);if(!n)throw new Error("Unexpected dot segment condition");{const i=n[0];t=t.slice(i.length),e.push(i)}}return e.join("")},normalizeIPv4:r,normalizeIPv6:a,stringArrayToHexStripped:s}},3837:t=>{"use strict";t.exports=JSON.parse('{"$id":"https://raw.githubusercontent.com/ajv-validator/ajv/master/lib/refs/data.json#","description":"Meta-schema for $data reference (JSON AnySchema extension proposal)","type":"object","required":["$data"],"properties":{"$data":{"type":"string","anyOf":[{"format":"relative-json-pointer"},{"format":"json-pointer"}]}},"additionalProperties":false}')},7216:t=>{"use strict";t.exports=JSON.parse('{"$schema":"https://json-schema.org/draft/2020-12/schema","$id":"https://json-schema.org/draft/2020-12/meta/applicator","$vocabulary":{"https://json-schema.org/draft/2020-12/vocab/applicator":true},"$dynamicAnchor":"meta","title":"Applicator vocabulary meta-schema","type":["object","boolean"],"properties":{"prefixItems":{"$ref":"#/$defs/schemaArray"},"items":{"$dynamicRef":"#meta"},"contains":{"$dynamicRef":"#meta"},"additionalProperties":{"$dynamicRef":"#meta"},"properties":{"type":"object","additionalProperties":{"$dynamicRef":"#meta"},"default":{}},"patternProperties":{"type":"object","additionalProperties":{"$dynamicRef":"#meta"},"propertyNames":{"format":"regex"},"default":{}},"dependentSchemas":{"type":"object","additionalProperties":{"$dynamicRef":"#meta"},"default":{}},"propertyNames":{"$dynamicRef":"#meta"},"if":{"$dynamicRef":"#meta"},"then":{"$dynamicRef":"#meta"},"else":{"$dynamicRef":"#meta"},"allOf":{"$ref":"#/$defs/schemaArray"},"anyOf":{"$ref":"#/$defs/schemaArray"},"oneOf":{"$ref":"#/$defs/schemaArray"},"not":{"$dynamicRef":"#meta"}},"$defs":{"schemaArray":{"type":"array","minItems":1,"items":{"$dynamicRef":"#meta"}}}}')},8226:t=>{"use strict";t.exports=JSON.parse('{"$schema":"https://json-schema.org/draft/2020-12/schema","$id":"https://json-schema.org/draft/2020-12/meta/content","$vocabulary":{"https://json-schema.org/draft/2020-12/vocab/content":true},"$dynamicAnchor":"meta","title":"Content vocabulary meta-schema","type":["object","boolean"],"properties":{"contentEncoding":{"type":"string"},"contentMediaType":{"type":"string"},"contentSchema":{"$dynamicRef":"#meta"}}}')},518:t=>{"use strict";t.exports=JSON.parse('{"$schema":"https://json-schema.org/draft/2020-12/schema","$id":"https://json-schema.org/draft/2020-12/meta/core","$vocabulary":{"https://json-schema.org/draft/2020-12/vocab/core":true},"$dynamicAnchor":"meta","title":"Core vocabulary meta-schema","type":["object","boolean"],"properties":{"$id":{"$ref":"#/$defs/uriReferenceString","$comment":"Non-empty fragments not allowed.","pattern":"^[^#]*#?$"},"$schema":{"$ref":"#/$defs/uriString"},"$ref":{"$ref":"#/$defs/uriReferenceString"},"$anchor":{"$ref":"#/$defs/anchorString"},"$dynamicRef":{"$ref":"#/$defs/uriReferenceString"},"$dynamicAnchor":{"$ref":"#/$defs/anchorString"},"$vocabulary":{"type":"object","propertyNames":{"$ref":"#/$defs/uriString"},"additionalProperties":{"type":"boolean"}},"$comment":{"type":"string"},"$defs":{"type":"object","additionalProperties":{"$dynamicRef":"#meta"}}},"$defs":{"anchorString":{"type":"string","pattern":"^[A-Za-z_][-A-Za-z0-9._]*$"},"uriString":{"type":"string","format":"uri"},"uriReferenceString":{"type":"string","format":"uri-reference"}}}')},4588:t=>{"use strict";t.exports=JSON.parse('{"$schema":"https://json-schema.org/draft/2020-12/schema","$id":"https://json-schema.org/draft/2020-12/meta/format-annotation","$vocabulary":{"https://json-schema.org/draft/2020-12/vocab/format-annotation":true},"$dynamicAnchor":"meta","title":"Format vocabulary meta-schema for annotation results","type":["object","boolean"],"properties":{"format":{"type":"string"}}}')},5707:t=>{"use strict";t.exports=JSON.parse('{"$schema":"https://json-schema.org/draft/2020-12/schema","$id":"https://json-schema.org/draft/2020-12/meta/meta-data","$vocabulary":{"https://json-schema.org/draft/2020-12/vocab/meta-data":true},"$dynamicAnchor":"meta","title":"Meta-data vocabulary meta-schema","type":["object","boolean"],"properties":{"title":{"type":"string"},"description":{"type":"string"},"default":true,"deprecated":{"type":"boolean","default":false},"readOnly":{"type":"boolean","default":false},"writeOnly":{"type":"boolean","default":false},"examples":{"type":"array","items":true}}}')},9547:t=>{"use strict";t.exports=JSON.parse('{"$schema":"https://json-schema.org/draft/2020-12/schema","$id":"https://json-schema.org/draft/2020-12/meta/unevaluated","$vocabulary":{"https://json-schema.org/draft/2020-12/vocab/unevaluated":true},"$dynamicAnchor":"meta","title":"Unevaluated applicator vocabulary meta-schema","type":["object","boolean"],"properties":{"unevaluatedItems":{"$dynamicRef":"#meta"},"unevaluatedProperties":{"$dynamicRef":"#meta"}}}')},7082:t=>{"use strict";t.exports=JSON.parse('{"$schema":"https://json-schema.org/draft/2020-12/schema","$id":"https://json-schema.org/draft/2020-12/meta/validation","$vocabulary":{"https://json-schema.org/draft/2020-12/vocab/validation":true},"$dynamicAnchor":"meta","title":"Validation vocabulary meta-schema","type":["object","boolean"],"properties":{"type":{"anyOf":[{"$ref":"#/$defs/simpleTypes"},{"type":"array","items":{"$ref":"#/$defs/simpleTypes"},"minItems":1,"uniqueItems":true}]},"const":true,"enum":{"type":"array","items":true},"multipleOf":{"type":"number","exclusiveMinimum":0},"maximum":{"type":"number"},"exclusiveMaximum":{"type":"number"},"minimum":{"type":"number"},"exclusiveMinimum":{"type":"number"},"maxLength":{"$ref":"#/$defs/nonNegativeInteger"},"minLength":{"$ref":"#/$defs/nonNegativeIntegerDefault0"},"pattern":{"type":"string","format":"regex"},"maxItems":{"$ref":"#/$defs/nonNegativeInteger"},"minItems":{"$ref":"#/$defs/nonNegativeIntegerDefault0"},"uniqueItems":{"type":"boolean","default":false},"maxContains":{"$ref":"#/$defs/nonNegativeInteger"},"minContains":{"$ref":"#/$defs/nonNegativeInteger","default":1},"maxProperties":{"$ref":"#/$defs/nonNegativeInteger"},"minProperties":{"$ref":"#/$defs/nonNegativeIntegerDefault0"},"required":{"$ref":"#/$defs/stringArray"},"dependentRequired":{"type":"object","additionalProperties":{"$ref":"#/$defs/stringArray"}}},"$defs":{"nonNegativeInteger":{"type":"integer","minimum":0},"nonNegativeIntegerDefault0":{"$ref":"#/$defs/nonNegativeInteger","default":0},"simpleTypes":{"enum":["array","boolean","integer","null","number","object","string"]},"stringArray":{"type":"array","items":{"type":"string"},"uniqueItems":true,"default":[]}}}')},1678:t=>{"use strict";t.exports=JSON.parse('{"$schema":"https://json-schema.org/draft/2020-12/schema","$id":"https://json-schema.org/draft/2020-12/schema","$vocabulary":{"https://json-schema.org/draft/2020-12/vocab/core":true,"https://json-schema.org/draft/2020-12/vocab/applicator":true,"https://json-schema.org/draft/2020-12/vocab/unevaluated":true,"https://json-schema.org/draft/2020-12/vocab/validation":true,"https://json-schema.org/draft/2020-12/vocab/meta-data":true,"https://json-schema.org/draft/2020-12/vocab/format-annotation":true,"https://json-schema.org/draft/2020-12/vocab/content":true},"$dynamicAnchor":"meta","title":"Core and Validation specifications meta-schema","allOf":[{"$ref":"meta/core"},{"$ref":"meta/applicator"},{"$ref":"meta/unevaluated"},{"$ref":"meta/validation"},{"$ref":"meta/meta-data"},{"$ref":"meta/format-annotation"},{"$ref":"meta/content"}],"type":["object","boolean"],"$comment":"This meta-schema also defines keywords that have appeared in previous drafts in order to prevent incompatible extensions as they remain in common use.","properties":{"definitions":{"$comment":"\\"definitions\\" has been replaced by \\"$defs\\".","type":"object","additionalProperties":{"$dynamicRef":"#meta"},"deprecated":true,"default":{}},"dependencies":{"$comment":"\\"dependencies\\" has been split and replaced by \\"dependentSchemas\\" and \\"dependentRequired\\" in order to serve their differing semantics.","type":"object","additionalProperties":{"anyOf":[{"$dynamicRef":"#meta"},{"$ref":"meta/validation#/$defs/stringArray"}]},"deprecated":true,"default":{}},"$recursiveAnchor":{"$comment":"\\"$recursiveAnchor\\" has been replaced by \\"$dynamicAnchor\\".","$ref":"meta/core#/$defs/anchorString","deprecated":true},"$recursiveRef":{"$comment":"\\"$recursiveRef\\" has been replaced by \\"$dynamicRef\\".","$ref":"meta/core#/$defs/uriReferenceString","deprecated":true}}}')},2079:t=>{"use strict";t.exports=JSON.parse('{"$schema":"http://json-schema.org/draft-07/schema#","$id":"http://json-schema.org/draft-07/schema#","title":"Core schema meta-schema","definitions":{"schemaArray":{"type":"array","minItems":1,"items":{"$ref":"#"}},"nonNegativeInteger":{"type":"integer","minimum":0},"nonNegativeIntegerDefault0":{"allOf":[{"$ref":"#/definitions/nonNegativeInteger"},{"default":0}]},"simpleTypes":{"enum":["array","boolean","integer","null","number","object","string"]},"stringArray":{"type":"array","items":{"type":"string"},"uniqueItems":true,"default":[]}},"type":["object","boolean"],"properties":{"$id":{"type":"string","format":"uri-reference"},"$schema":{"type":"string","format":"uri"},"$ref":{"type":"string","format":"uri-reference"},"$comment":{"type":"string"},"title":{"type":"string"},"description":{"type":"string"},"default":true,"readOnly":{"type":"boolean","default":false},"examples":{"type":"array","items":true},"multipleOf":{"type":"number","exclusiveMinimum":0},"maximum":{"type":"number"},"exclusiveMaximum":{"type":"number"},"minimum":{"type":"number"},"exclusiveMinimum":{"type":"number"},"maxLength":{"$ref":"#/definitions/nonNegativeInteger"},"minLength":{"$ref":"#/definitions/nonNegativeIntegerDefault0"},"pattern":{"type":"string","format":"regex"},"additionalItems":{"$ref":"#"},"items":{"anyOf":[{"$ref":"#"},{"$ref":"#/definitions/schemaArray"}],"default":true},"maxItems":{"$ref":"#/definitions/nonNegativeInteger"},"minItems":{"$ref":"#/definitions/nonNegativeIntegerDefault0"},"uniqueItems":{"type":"boolean","default":false},"contains":{"$ref":"#"},"maxProperties":{"$ref":"#/definitions/nonNegativeInteger"},"minProperties":{"$ref":"#/definitions/nonNegativeIntegerDefault0"},"required":{"$ref":"#/definitions/stringArray"},"additionalProperties":{"$ref":"#"},"definitions":{"type":"object","additionalProperties":{"$ref":"#"},"default":{}},"properties":{"type":"object","additionalProperties":{"$ref":"#"},"default":{}},"patternProperties":{"type":"object","additionalProperties":{"$ref":"#"},"propertyNames":{"format":"regex"},"default":{}},"dependencies":{"type":"object","additionalProperties":{"anyOf":[{"$ref":"#"},{"$ref":"#/definitions/stringArray"}]}},"propertyNames":{"$ref":"#"},"const":true,"enum":{"type":"array","items":true,"minItems":1,"uniqueItems":true},"type":{"anyOf":[{"$ref":"#/definitions/simpleTypes"},{"type":"array","items":{"$ref":"#/definitions/simpleTypes"},"minItems":1,"uniqueItems":true}]},"format":{"type":"string"},"contentMediaType":{"type":"string"},"contentEncoding":{"type":"string"},"if":{"$ref":"#"},"then":{"$ref":"#"},"else":{"$ref":"#"},"allOf":{"$ref":"#/definitions/schemaArray"},"anyOf":{"$ref":"#/definitions/schemaArray"},"oneOf":{"$ref":"#/definitions/schemaArray"},"not":{"$ref":"#"}},"default":true}')}},e={};function n(i){var o=e[i];if(void 0!==o)return o.exports;var r=e[i]={id:i,loaded:!1,exports:{}};return t[i].call(r.exports,r,r.exports,n),r.loaded=!0,r.exports}n.m=t,n.amdO={},n.n=t=>{var e=t&&t.__esModule?()=>t.default:()=>t;return n.d(e,{a:e}),e},n.d=(t,e)=>{for(var i in e)n.o(e,i)&&!n.o(t,i)&&Object.defineProperty(t,i,{enumerable:!0,get:e[i]})},n.u=t=>t+".js",n.g=function(){if("object"==typeof globalThis)return globalThis;try{return this||new Function("return this")()}catch(t){if("object"==typeof window)return window}}(),n.hmd=t=>((t=Object.create(t)).children||(t.children=[]),Object.defineProperty(t,"exports",{enumerable:!0,set:()=>{throw new Error("ES Modules may not assign module.exports or exports.*, Use ESM export syntax, instead: "+t.id)}}),t),n.o=(t,e)=>Object.prototype.hasOwnProperty.call(t,e),n.r=t=>{"undefined"!=typeof Symbol&&Symbol.toStringTag&&Object.defineProperty(t,Symbol.toStringTag,{value:"Module"}),Object.defineProperty(t,"__esModule",{value:!0})},(()=>{var t;n.g.importScripts&&(t=n.g.location+"");var e=n.g.document;if(!t&&e&&(e.currentScript&&"SCRIPT"===e.currentScript.tagName.toUpperCase()&&(t=e.currentScript.src),!t)){var i=e.getElementsByTagName("script");if(i.length)for(var o=i.length-1;o>-1&&(!t||!/^http(s?):/.test(t));)t=i[o--].src}if(!t)throw new Error("Automatic publicPath is not supported in this browser");t=t.replace(/#.*$/,"").replace(/\?.*$/,"").replace(/\/[^\/]+$/,"/"),n.p=t})(),n.b=document.baseURI||self.location.href,n.nc=void 0;var i=n(6723);bio=i})();
7
+ deps: ${n}}`};const s={keyword:"dependencies",type:"object",schemaType:"object",error:e.error,code(t){const[e,n]=function({schema:t}){const e={},n={};for(const i in t)"__proto__"!==i&&((Array.isArray(t[i])?e:n)[i]=t[i]);return[e,n]}(t);a(t,e),l(t,n)}};function a(t,e=t.schema){const{gen:n,data:o,it:s}=t;if(0===Object.keys(e).length)return;const a=n.let("missing");for(const l in e){const c=e[l];if(0===c.length)continue;const h=(0,r.propertyInData)(n,o,l,s.opts.ownProperties);t.setParams({property:l,depsCount:c.length,deps:c.join(", ")}),s.allErrors?n.if(h,(()=>{for(const e of c)(0,r.checkReportMissingProp)(t,e)})):(n.if(i._`${h} && (${(0,r.checkMissingProp)(t,c,a)})`),(0,r.reportMissingProp)(t,a),n.else())}}function l(t,e=t.schema){const{gen:n,data:i,keyword:s,it:a}=t,l=n.name("valid");for(const c in e)(0,o.alwaysValidSchema)(a,e[c])||(n.if((0,r.propertyInData)(n,i,c,a.opts.ownProperties),(()=>{const e=t.subschema({keyword:s,schemaProp:c},l);t.mergeValidEvaluated(e,l)}),(()=>n.var(l,!0))),t.ok(l))}e.validatePropertyDeps=a,e.validateSchemaDeps=l,e.default=s},4845:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(3025),o={keyword:"dependentSchemas",type:"object",schemaType:"object",code:t=>(0,i.validateSchemaDeps)(t)};e.default=o},1239:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(4227),r={keyword:"if",schemaType:["object","boolean"],trackErrors:!0,error:{message:({params:t})=>i.str`must match "${t.ifClause}" schema`,params:({params:t})=>i._`{failingKeyword: ${t.ifClause}}`},code(t){const{gen:e,parentSchema:n,it:r}=t;void 0===n.then&&void 0===n.else&&(0,o.checkStrictMode)(r,'"if" without "then" and "else" is ignored');const a=s(r,"then"),l=s(r,"else");if(!a&&!l)return;const c=e.let("valid",!0),h=e.name("_valid");if(function(){const e=t.subschema({keyword:"if",compositeRule:!0,createErrors:!1,allErrors:!1},h);t.mergeEvaluated(e)}(),t.reset(),a&&l){const n=e.let("ifClause");t.setParams({ifClause:n}),e.if(h,u("then",n),u("else",n))}else a?e.if(h,u("then")):e.if((0,i.not)(h),u("else"));function u(n,o){return()=>{const r=t.subschema({keyword:n},h);e.assign(c,h),t.mergeValidEvaluated(r,c),o?e.assign(o,i._`${n}`):t.setParams({ifClause:n})}}t.pass(c,(()=>t.error(!0)))}};function s(t,e){const n=t.schema[e];return void 0!==n&&!(0,o.alwaysValidSchema)(t,n)}e.default=r},6378:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(5457),o=n(5354),r=n(494),s=n(3966),a=n(2661),l=n(3025),c=n(2094),h=n(8660),u=n(117),d=n(5333),p=n(7923),m=n(6505),f=n(6163),g=n(5844),y=n(1239),b=n(4426);e.default=function(t=!1){const e=[p.default,m.default,f.default,g.default,y.default,b.default,c.default,h.default,l.default,u.default,d.default];return t?e.push(o.default,s.default):e.push(i.default,r.default),e.push(a.default),e}},494:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.validateTuple=void 0;const i=n(9029),o=n(4227),r=n(5765),s={keyword:"items",type:"array",schemaType:["object","array","boolean"],before:"uniqueItems",code(t){const{schema:e,it:n}=t;if(Array.isArray(e))return a(t,"additionalItems",e);n.items=!0,(0,o.alwaysValidSchema)(n,e)||t.ok((0,r.validateArray)(t))}};function a(t,e,n=t.schema){const{gen:r,parentSchema:s,data:a,keyword:l,it:c}=t;!function(t){const{opts:i,errSchemaPath:r}=c,s=n.length,a=s===t.minItems&&(s===t.maxItems||!1===t[e]);if(i.strictTuples&&!a){const t=`"${l}" is ${s}-tuple, but minItems or maxItems/${e} are not specified or different at path "${r}"`;(0,o.checkStrictMode)(c,t,i.strictTuples)}}(s),c.opts.unevaluated&&n.length&&!0!==c.items&&(c.items=o.mergeEvaluated.items(r,n.length,c.items));const h=r.name("valid"),u=r.const("len",i._`${a}.length`);n.forEach(((e,n)=>{(0,o.alwaysValidSchema)(c,e)||(r.if(i._`${u} > ${n}`,(()=>t.subschema({keyword:l,schemaProp:n,dataProp:n},h))),t.ok(h))}))}e.validateTuple=a,e.default=s},3966:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(4227),r=n(5765),s=n(5457),a={keyword:"items",type:"array",schemaType:["object","boolean"],before:"uniqueItems",error:{message:({params:{len:t}})=>i.str`must NOT have more than ${t} items`,params:({params:{len:t}})=>i._`{limit: ${t}}`},code(t){const{schema:e,parentSchema:n,it:i}=t,{prefixItems:a}=n;i.items=!0,(0,o.alwaysValidSchema)(i,e)||(a?(0,s.validateAdditionalItems)(t,a):t.ok((0,r.validateArray)(t)))}};e.default=a},7923:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(4227),o={keyword:"not",schemaType:["object","boolean"],trackErrors:!0,code(t){const{gen:e,schema:n,it:o}=t;if((0,i.alwaysValidSchema)(o,n))return void t.fail();const r=e.name("valid");t.subschema({keyword:"not",compositeRule:!0,createErrors:!1,allErrors:!1},r),t.failResult(r,(()=>t.reset()),(()=>t.error()))},error:{message:"must NOT be valid"}};e.default=o},6163:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(4227),r={keyword:"oneOf",schemaType:"array",trackErrors:!0,error:{message:"must match exactly one schema in oneOf",params:({params:t})=>i._`{passingSchemas: ${t.passing}}`},code(t){const{gen:e,schema:n,parentSchema:r,it:s}=t;if(!Array.isArray(n))throw new Error("ajv implementation error");if(s.opts.discriminator&&r.discriminator)return;const a=n,l=e.let("valid",!1),c=e.let("passing",null),h=e.name("_valid");t.setParams({passing:c}),e.block((function(){a.forEach(((n,r)=>{let a;(0,o.alwaysValidSchema)(s,n)?e.var(h,!0):a=t.subschema({keyword:"oneOf",schemaProp:r,compositeRule:!0},h),r>0&&e.if(i._`${h} && ${l}`).assign(l,!1).assign(c,i._`[${c}, ${r}]`).else(),e.if(h,(()=>{e.assign(l,!0),e.assign(c,r),a&&t.mergeEvaluated(a,i.Name)}))}))})),t.result(l,(()=>t.reset()),(()=>t.error(!0)))}};e.default=r},5333:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(5765),o=n(9029),r=n(4227),s=n(4227),a={keyword:"patternProperties",type:"object",schemaType:"object",code(t){const{gen:e,schema:n,data:a,parentSchema:l,it:c}=t,{opts:h}=c,u=(0,i.allSchemaProperties)(n),d=u.filter((t=>(0,r.alwaysValidSchema)(c,n[t])));if(0===u.length||d.length===u.length&&(!c.opts.unevaluated||!0===c.props))return;const p=h.strictSchema&&!h.allowMatchingProperties&&l.properties,m=e.name("valid");!0===c.props||c.props instanceof o.Name||(c.props=(0,s.evaluatedPropsToName)(e,c.props));const{props:f}=c;function g(t){for(const e in p)new RegExp(t).test(e)&&(0,r.checkStrictMode)(c,`property ${e} matches pattern ${t} (use allowMatchingProperties)`)}function y(n){e.forIn("key",a,(r=>{e.if(o._`${(0,i.usePattern)(t,n)}.test(${r})`,(()=>{const i=d.includes(n);i||t.subschema({keyword:"patternProperties",schemaProp:n,dataProp:r,dataPropType:s.Type.Str},m),c.opts.unevaluated&&!0!==f?e.assign(o._`${f}[${r}]`,!0):i||c.allErrors||e.if((0,o.not)(m),(()=>e.break()))}))}))}!function(){for(const t of u)p&&g(t),c.allErrors?y(t):(e.var(m,!0),y(t),e.if(m))}()}};e.default=a},5354:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(494),o={keyword:"prefixItems",type:"array",schemaType:["array"],before:"uniqueItems",code:t=>(0,i.validateTuple)(t,"items")};e.default=o},117:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(2586),o=n(5765),r=n(4227),s=n(8660),a={keyword:"properties",type:"object",schemaType:"object",code(t){const{gen:e,schema:n,parentSchema:a,data:l,it:c}=t;"all"===c.opts.removeAdditional&&void 0===a.additionalProperties&&s.default.code(new i.KeywordCxt(c,s.default,"additionalProperties"));const h=(0,o.allSchemaProperties)(n);for(const t of h)c.definedProperties.add(t);c.opts.unevaluated&&h.length&&!0!==c.props&&(c.props=r.mergeEvaluated.props(e,(0,r.toHash)(h),c.props));const u=h.filter((t=>!(0,r.alwaysValidSchema)(c,n[t])));if(0===u.length)return;const d=e.name("valid");for(const n of u)p(n)?m(n):(e.if((0,o.propertyInData)(e,l,n,c.opts.ownProperties)),m(n),c.allErrors||e.else().var(d,!0),e.endIf()),t.it.definedProperties.add(n),t.ok(d);function p(t){return c.opts.useDefaults&&!c.compositeRule&&void 0!==n[t].default}function m(e){t.subschema({keyword:"properties",schemaProp:e,dataProp:e},d)}}};e.default=a},2094:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(4227),r={keyword:"propertyNames",type:"object",schemaType:["object","boolean"],error:{message:"property name must be valid",params:({params:t})=>i._`{propertyName: ${t.propertyName}}`},code(t){const{gen:e,schema:n,data:r,it:s}=t;if((0,o.alwaysValidSchema)(s,n))return;const a=e.name("valid");e.forIn("key",r,(n=>{t.setParams({propertyName:n}),t.subschema({keyword:"propertyNames",data:n,dataTypes:["string"],propertyName:n,compositeRule:!0},a),e.if((0,i.not)(a),(()=>{t.error(!0),s.allErrors||e.break()}))})),t.ok(a)}};e.default=r},4426:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(4227),o={keyword:["then","else"],schemaType:["object","boolean"],code({keyword:t,parentSchema:e,it:n}){void 0===e.if&&(0,i.checkStrictMode)(n,`"${t}" without "if" is ignored`)}};e.default=o},5765:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.validateUnion=e.validateArray=e.usePattern=e.callValidateCode=e.schemaProperties=e.allSchemaProperties=e.noPropertyInData=e.propertyInData=e.isOwnProperty=e.hasPropFunc=e.reportMissingProp=e.checkMissingProp=e.checkReportMissingProp=void 0;const i=n(9029),o=n(4227),r=n(2023),s=n(4227);function a(t){return t.scopeValue("func",{ref:Object.prototype.hasOwnProperty,code:i._`Object.prototype.hasOwnProperty`})}function l(t,e,n){return i._`${a(t)}.call(${e}, ${n})`}function c(t,e,n,o){const r=i._`${e}${(0,i.getProperty)(n)} === undefined`;return o?(0,i.or)(r,(0,i.not)(l(t,e,n))):r}function h(t){return t?Object.keys(t).filter((t=>"__proto__"!==t)):[]}e.checkReportMissingProp=function(t,e){const{gen:n,data:o,it:r}=t;n.if(c(n,o,e,r.opts.ownProperties),(()=>{t.setParams({missingProperty:i._`${e}`},!0),t.error()}))},e.checkMissingProp=function({gen:t,data:e,it:{opts:n}},o,r){return(0,i.or)(...o.map((o=>(0,i.and)(c(t,e,o,n.ownProperties),i._`${r} = ${o}`))))},e.reportMissingProp=function(t,e){t.setParams({missingProperty:e},!0),t.error()},e.hasPropFunc=a,e.isOwnProperty=l,e.propertyInData=function(t,e,n,o){const r=i._`${e}${(0,i.getProperty)(n)} !== undefined`;return o?i._`${r} && ${l(t,e,n)}`:r},e.noPropertyInData=c,e.allSchemaProperties=h,e.schemaProperties=function(t,e){return h(e).filter((n=>!(0,o.alwaysValidSchema)(t,e[n])))},e.callValidateCode=function({schemaCode:t,data:e,it:{gen:n,topSchemaRef:o,schemaPath:s,errorPath:a},it:l},c,h,u){const d=u?i._`${t}, ${e}, ${o}${s}`:e,p=[[r.default.instancePath,(0,i.strConcat)(r.default.instancePath,a)],[r.default.parentData,l.parentData],[r.default.parentDataProperty,l.parentDataProperty],[r.default.rootData,r.default.rootData]];l.opts.dynamicRef&&p.push([r.default.dynamicAnchors,r.default.dynamicAnchors]);const m=i._`${d}, ${n.object(...p)}`;return h!==i.nil?i._`${c}.call(${h}, ${m})`:i._`${c}(${m})`};const u=i._`new RegExp`;e.usePattern=function({gen:t,it:{opts:e}},n){const o=e.unicodeRegExp?"u":"",{regExp:r}=e.code,a=r(n,o);return t.scopeValue("pattern",{key:a.toString(),ref:a,code:i._`${"new RegExp"===r.code?u:(0,s.useFunc)(t,r)}(${n}, ${o})`})},e.validateArray=function(t){const{gen:e,data:n,keyword:r,it:s}=t,a=e.name("valid");if(s.allErrors){const t=e.let("valid",!0);return l((()=>e.assign(t,!1))),t}return e.var(a,!0),l((()=>e.break())),a;function l(s){const l=e.const("len",i._`${n}.length`);e.forRange("i",0,l,(n=>{t.subschema({keyword:r,dataProp:n,dataPropType:o.Type.Num},a),e.if((0,i.not)(a),s)}))}},e.validateUnion=function(t){const{gen:e,schema:n,keyword:r,it:s}=t;if(!Array.isArray(n))throw new Error("ajv implementation error");if(n.some((t=>(0,o.alwaysValidSchema)(s,t)))&&!s.opts.unevaluated)return;const a=e.let("valid",!1),l=e.name("_valid");e.block((()=>n.forEach(((n,o)=>{const s=t.subschema({keyword:r,schemaProp:o,compositeRule:!0},l);e.assign(a,i._`${a} || ${l}`),t.mergeValidEvaluated(s,l)||e.if((0,i.not)(a))})))),t.result(a,(()=>t.reset()),(()=>t.error(!0)))}},3463:(t,e)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const n={keyword:"id",code(){throw new Error('NOT SUPPORTED: keyword "id", use "$id" for schema ID')}};e.default=n},2128:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(3463),o=n(3693),r=["$schema","$id","$defs","$vocabulary",{keyword:"$comment"},"definitions",i.default,o.default];e.default=r},3693:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.callRef=e.getValidate=void 0;const i=n(4551),o=n(5765),r=n(9029),s=n(2023),a=n(3835),l=n(4227),c={keyword:"$ref",schemaType:"string",code(t){const{gen:e,schema:n,it:o}=t,{baseId:s,schemaEnv:l,validateName:c,opts:d,self:p}=o,{root:m}=l;if(("#"===n||"#/"===n)&&s===m.baseId)return function(){if(l===m)return u(t,c,l,l.$async);const n=e.scopeValue("root",{ref:m});return u(t,r._`${n}.validate`,m,m.$async)}();const f=a.resolveRef.call(p,m,s,n);if(void 0===f)throw new i.default(o.opts.uriResolver,s,n);return f instanceof a.SchemaEnv?function(e){const n=h(t,e);u(t,n,e,e.$async)}(f):function(i){const o=e.scopeValue("schema",!0===d.code.source?{ref:i,code:(0,r.stringify)(i)}:{ref:i}),s=e.name("valid"),a=t.subschema({schema:i,dataTypes:[],schemaPath:r.nil,topSchemaRef:o,errSchemaPath:n},s);t.mergeEvaluated(a),t.ok(s)}(f)}};function h(t,e){const{gen:n}=t;return e.validate?n.scopeValue("validate",{ref:e.validate}):r._`${n.scopeValue("wrapper",{ref:e})}.validate`}function u(t,e,n,i){const{gen:a,it:c}=t,{allErrors:h,schemaEnv:u,opts:d}=c,p=d.passContext?s.default.this:r.nil;function m(t){const e=r._`${t}.errors`;a.assign(s.default.vErrors,r._`${s.default.vErrors} === null ? ${e} : ${s.default.vErrors}.concat(${e})`),a.assign(s.default.errors,r._`${s.default.vErrors}.length`)}function f(t){var e;if(!c.opts.unevaluated)return;const i=null===(e=null==n?void 0:n.validate)||void 0===e?void 0:e.evaluated;if(!0!==c.props)if(i&&!i.dynamicProps)void 0!==i.props&&(c.props=l.mergeEvaluated.props(a,i.props,c.props));else{const e=a.var("props",r._`${t}.evaluated.props`);c.props=l.mergeEvaluated.props(a,e,c.props,r.Name)}if(!0!==c.items)if(i&&!i.dynamicItems)void 0!==i.items&&(c.items=l.mergeEvaluated.items(a,i.items,c.items));else{const e=a.var("items",r._`${t}.evaluated.items`);c.items=l.mergeEvaluated.items(a,e,c.items,r.Name)}}i?function(){if(!u.$async)throw new Error("async schema referenced by sync schema");const n=a.let("valid");a.try((()=>{a.code(r._`await ${(0,o.callValidateCode)(t,e,p)}`),f(e),h||a.assign(n,!0)}),(t=>{a.if(r._`!(${t} instanceof ${c.ValidationError})`,(()=>a.throw(t))),m(t),h||a.assign(n,!1)})),t.ok(n)}():t.result((0,o.callValidateCode)(t,e,p),(()=>f(e)),(()=>m(e)))}e.getValidate=h,e.callRef=u,e.default=c},6653:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(7652),r=n(3835),s=n(4551),a=n(4227),l={keyword:"discriminator",type:"object",schemaType:"object",error:{message:({params:{discrError:t,tagName:e}})=>t===o.DiscrError.Tag?`tag "${e}" must be string`:`value of tag "${e}" must be in oneOf`,params:({params:{discrError:t,tag:e,tagName:n}})=>i._`{error: ${t}, tag: ${n}, tagValue: ${e}}`},code(t){const{gen:e,data:n,schema:l,parentSchema:c,it:h}=t,{oneOf:u}=c;if(!h.opts.discriminator)throw new Error("discriminator: requires discriminator option");const d=l.propertyName;if("string"!=typeof d)throw new Error("discriminator: requires propertyName");if(l.mapping)throw new Error("discriminator: mapping is not supported");if(!u)throw new Error("discriminator: requires oneOf keyword");const p=e.let("valid",!1),m=e.const("tag",i._`${n}${(0,i.getProperty)(d)}`);function f(n){const o=e.name("valid"),r=t.subschema({keyword:"oneOf",schemaProp:n},o);return t.mergeEvaluated(r,i.Name),o}e.if(i._`typeof ${m} == "string"`,(()=>function(){const n=function(){var t;const e={},n=o(c);let i=!0;for(let e=0;e<u.length;e++){let c=u[e];if((null==c?void 0:c.$ref)&&!(0,a.schemaHasRulesButRef)(c,h.self.RULES)){const t=c.$ref;if(c=r.resolveRef.call(h.self,h.schemaEnv.root,h.baseId,t),c instanceof r.SchemaEnv&&(c=c.schema),void 0===c)throw new s.default(h.opts.uriResolver,h.baseId,t)}const p=null===(t=null==c?void 0:c.properties)||void 0===t?void 0:t[d];if("object"!=typeof p)throw new Error(`discriminator: oneOf subschemas (or referenced schemas) must have "properties/${d}"`);i=i&&(n||o(c)),l(p,e)}if(!i)throw new Error(`discriminator: "${d}" must be required`);return e;function o({required:t}){return Array.isArray(t)&&t.includes(d)}function l(t,e){if(t.const)p(t.const,e);else{if(!t.enum)throw new Error(`discriminator: "properties/${d}" must have "const" or "enum"`);for(const n of t.enum)p(n,e)}}function p(t,n){if("string"!=typeof t||t in e)throw new Error(`discriminator: "${d}" values must be unique strings`);e[t]=n}}();e.if(!1);for(const t in n)e.elseIf(i._`${m} === ${t}`),e.assign(p,f(n[t]));e.else(),t.error(!1,{discrError:o.DiscrError.Mapping,tag:m,tagName:d}),e.endIf()}()),(()=>t.error(!1,{discrError:o.DiscrError.Tag,tag:m,tagName:d}))),t.ok(p)}};e.default=l},7652:(t,e)=>{"use strict";var n;Object.defineProperty(e,"__esModule",{value:!0}),e.DiscrError=void 0,function(t){t.Tag="tag",t.Mapping="mapping"}(n||(e.DiscrError=n={}))},6105:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(2128),o=n(7060),r=n(6378),s=n(5520),a=n(5413),l=n(3265),c=n(7532),h=n(9857),u=[s.default,i.default,o.default,(0,r.default)(!0),c.default,h.metadataVocabulary,h.contentVocabulary,a.default,l.default];e.default=u},6144:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(2128),o=n(7060),r=n(6378),s=n(7532),a=n(9857),l=[i.default,o.default,(0,r.default)(),s.default,a.metadataVocabulary,a.contentVocabulary];e.default=l},2476:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.dynamicAnchor=void 0;const i=n(9029),o=n(2023),r=n(3835),s=n(3693),a={keyword:"$dynamicAnchor",schemaType:"string",code:t=>l(t,t.schema)};function l(t,e){const{gen:n,it:a}=t;a.schemaEnv.root.dynamicAnchors[e]=!0;const l=i._`${o.default.dynamicAnchors}${(0,i.getProperty)(e)}`,c="#"===a.errSchemaPath?a.validateName:function(t){const{schemaEnv:e,schema:n,self:i}=t.it,{root:o,baseId:a,localRefs:l,meta:c}=e.root,{schemaId:h}=i.opts,u=new r.SchemaEnv({schema:n,schemaId:h,root:o,baseId:a,localRefs:l,meta:c});return r.compileSchema.call(i,u),(0,s.getValidate)(t,u)}(t);n.if(i._`!${l}`,(()=>n.assign(l,c)))}e.dynamicAnchor=l,e.default=a},3252:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.dynamicRef=void 0;const i=n(9029),o=n(2023),r=n(3693),s={keyword:"$dynamicRef",schemaType:"string",code:t=>a(t,t.schema)};function a(t,e){const{gen:n,keyword:s,it:a}=t;if("#"!==e[0])throw new Error(`"${s}" only supports hash fragment reference`);const l=e.slice(1);if(a.allErrors)c();else{const e=n.let("valid",!1);c(e),t.ok(e)}function c(t){if(a.schemaEnv.root.dynamicAnchors[l]){const e=n.let("_v",i._`${o.default.dynamicAnchors}${(0,i.getProperty)(l)}`);n.if(e,h(e,t),h(a.validateName,t))}else h(a.validateName,t)()}function h(e,i){return i?()=>n.block((()=>{(0,r.callRef)(t,e),n.let(i,!0)})):()=>(0,r.callRef)(t,e)}}e.dynamicRef=a,e.default=s},5520:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(2476),o=n(3252),r=n(2721),s=n(3799),a=[i.default,o.default,r.default,s.default];e.default=a},2721:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(2476),o=n(4227),r={keyword:"$recursiveAnchor",schemaType:"boolean",code(t){t.schema?(0,i.dynamicAnchor)(t,""):(0,o.checkStrictMode)(t.it,"$recursiveAnchor: false is ignored")}};e.default=r},3799:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(3252),o={keyword:"$recursiveRef",schemaType:"string",code:t=>(0,i.dynamicRef)(t,t.schema)};e.default=o},4737:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o={keyword:"format",type:["number","string"],schemaType:"string",$data:!0,error:{message:({schemaCode:t})=>i.str`must match format "${t}"`,params:({schemaCode:t})=>i._`{format: ${t}}`},code(t,e){const{gen:n,data:o,$data:r,schema:s,schemaCode:a,it:l}=t,{opts:c,errSchemaPath:h,schemaEnv:u,self:d}=l;c.validateFormats&&(r?function(){const r=n.scopeValue("formats",{ref:d.formats,code:c.code.formats}),s=n.const("fDef",i._`${r}[${a}]`),l=n.let("fType"),h=n.let("format");n.if(i._`typeof ${s} == "object" && !(${s} instanceof RegExp)`,(()=>n.assign(l,i._`${s}.type || "string"`).assign(h,i._`${s}.validate`)),(()=>n.assign(l,i._`"string"`).assign(h,s))),t.fail$data((0,i.or)(!1===c.strictSchema?i.nil:i._`${a} && !${h}`,function(){const t=u.$async?i._`(${s}.async ? await ${h}(${o}) : ${h}(${o}))`:i._`${h}(${o})`,n=i._`(typeof ${h} == "function" ? ${t} : ${h}.test(${o}))`;return i._`${h} && ${h} !== true && ${l} === ${e} && !${n}`}()))}():function(){const r=d.formats[s];if(!r)return void function(){if(!1!==c.strictSchema)throw new Error(t());function t(){return`unknown format "${s}" ignored in schema at path "${h}"`}d.logger.warn(t())}();if(!0===r)return;const[a,l,p]=function(t){const e=t instanceof RegExp?(0,i.regexpCode)(t):c.code.formats?i._`${c.code.formats}${(0,i.getProperty)(s)}`:void 0,o=n.scopeValue("formats",{key:s,ref:t,code:e});return"object"!=typeof t||t instanceof RegExp?["string",t,o]:[t.type||"string",t.validate,i._`${o}.validate`]}(r);a===e&&t.pass(function(){if("object"==typeof r&&!(r instanceof RegExp)&&r.async){if(!u.$async)throw new Error("async format in sync schema");return i._`await ${p}(${o})`}return"function"==typeof l?i._`${p}(${o})`:i._`${p}.test(${o})`}())}())}};e.default=o},7532:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=[n(4737).default];e.default=i},9857:(t,e)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.contentVocabulary=e.metadataVocabulary=void 0,e.metadataVocabulary=["title","description","default","deprecated","readOnly","writeOnly","examples"],e.contentVocabulary=["contentMediaType","contentEncoding","contentSchema"]},5413:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(1846),o=n(4845),r=n(2626),s=[i.default,o.default,r.default];e.default=s},3265:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(392),o=n(3445),r=[i.default,o.default];e.default=r},3445:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(4227),r={keyword:"unevaluatedItems",type:"array",schemaType:["boolean","object"],error:{message:({params:{len:t}})=>i.str`must NOT have more than ${t} items`,params:({params:{len:t}})=>i._`{limit: ${t}}`},code(t){const{gen:e,schema:n,data:r,it:s}=t,a=s.items||0;if(!0===a)return;const l=e.const("len",i._`${r}.length`);if(!1===n)t.setParams({len:a}),t.fail(i._`${l} > ${a}`);else if("object"==typeof n&&!(0,o.alwaysValidSchema)(s,n)){const n=e.var("valid",i._`${l} <= ${a}`);e.if((0,i.not)(n),(()=>function(n,r){e.forRange("i",r,l,(r=>{t.subschema({keyword:"unevaluatedItems",dataProp:r,dataPropType:o.Type.Num},n),s.allErrors||e.if((0,i.not)(n),(()=>e.break()))}))}(n,a))),t.ok(n)}s.items=!0}};e.default=r},392:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(4227),r=n(2023),s={keyword:"unevaluatedProperties",type:"object",schemaType:["boolean","object"],trackErrors:!0,error:{message:"must NOT have unevaluated properties",params:({params:t})=>i._`{unevaluatedProperty: ${t.unevaluatedProperty}}`},code(t){const{gen:e,schema:n,data:s,errsCount:a,it:l}=t;if(!a)throw new Error("ajv implementation error");const{allErrors:c,props:h}=l;function u(r){if(!1===n)return t.setParams({unevaluatedProperty:r}),t.error(),void(c||e.break());if(!(0,o.alwaysValidSchema)(l,n)){const n=e.name("valid");t.subschema({keyword:"unevaluatedProperties",dataProp:r,dataPropType:o.Type.Str},n),c||e.if((0,i.not)(n),(()=>e.break()))}}h instanceof i.Name?e.if(i._`${h} !== true`,(()=>e.forIn("key",s,(t=>e.if(function(t,e){return i._`!${t} || !${t}[${e}]`}(h,t),(()=>u(t))))))):!0!==h&&e.forIn("key",s,(t=>void 0===h?u(t):e.if(function(t,e){const n=[];for(const o in t)!0===t[o]&&n.push(i._`${e} !== ${o}`);return(0,i.and)(...n)}(h,t),(()=>u(t))))),l.props=!0,t.ok(i._`${a} === ${r.default.errors}`)}};e.default=s},7935:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(4227),r=n(6250),s={keyword:"const",$data:!0,error:{message:"must be equal to constant",params:({schemaCode:t})=>i._`{allowedValue: ${t}}`},code(t){const{gen:e,data:n,$data:s,schemaCode:a,schema:l}=t;s||l&&"object"==typeof l?t.fail$data(i._`!${(0,o.useFunc)(e,r.default)}(${n}, ${a})`):t.fail(i._`${l} !== ${n}`)}};e.default=s},1846:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(3025),o={keyword:"dependentRequired",type:"object",schemaType:"object",error:i.error,code:t=>(0,i.validatePropertyDeps)(t)};e.default=o},8643:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(4227),r=n(6250),s={keyword:"enum",schemaType:"array",$data:!0,error:{message:"must be equal to one of the allowed values",params:({schemaCode:t})=>i._`{allowedValues: ${t}}`},code(t){const{gen:e,data:n,$data:s,schema:a,schemaCode:l,it:c}=t;if(!s&&0===a.length)throw new Error("enum must have non-empty array");const h=a.length>=c.opts.loopEnum;let u;const d=()=>null!=u?u:u=(0,o.useFunc)(e,r.default);let p;if(h||s)p=e.let("valid"),t.block$data(p,(function(){e.assign(p,!1),e.forOf("v",l,(t=>e.if(i._`${d()}(${n}, ${t})`,(()=>e.assign(p,!0).break()))))}));else{if(!Array.isArray(a))throw new Error("ajv implementation error");const t=e.const("vSchema",l);p=(0,i.or)(...a.map(((e,o)=>function(t,e){const o=a[e];return"object"==typeof o&&null!==o?i._`${d()}(${n}, ${t}[${e}])`:i._`${n} === ${o}`}(t,o))))}t.pass(p)}};e.default=s},7060:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(5882),o=n(3439),r=n(7307),s=n(422),a=n(4486),l=n(4003),c=n(1163),h=n(617),u=n(7935),d=n(8643),p=[i.default,o.default,r.default,s.default,a.default,l.default,c.default,h.default,{keyword:"type",schemaType:["string","array"]},{keyword:"nullable",schemaType:"boolean"},u.default,d.default];e.default=p},2626:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(4227),o={keyword:["maxContains","minContains"],type:"array",schemaType:"number",code({keyword:t,parentSchema:e,it:n}){void 0===e.contains&&(0,i.checkStrictMode)(n,`"${t}" without "contains" is ignored`)}};e.default=o},1163:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o={keyword:["maxItems","minItems"],type:"array",schemaType:"number",$data:!0,error:{message({keyword:t,schemaCode:e}){const n="maxItems"===t?"more":"fewer";return i.str`must NOT have ${n} than ${e} items`},params:({schemaCode:t})=>i._`{limit: ${t}}`},code(t){const{keyword:e,data:n,schemaCode:o}=t,r="maxItems"===e?i.operators.GT:i.operators.LT;t.fail$data(i._`${n}.length ${r} ${o}`)}};e.default=o},7307:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=n(4227),r=n(3853),s={keyword:["maxLength","minLength"],type:"string",schemaType:"number",$data:!0,error:{message({keyword:t,schemaCode:e}){const n="maxLength"===t?"more":"fewer";return i.str`must NOT have ${n} than ${e} characters`},params:({schemaCode:t})=>i._`{limit: ${t}}`},code(t){const{keyword:e,data:n,schemaCode:s,it:a}=t,l="maxLength"===e?i.operators.GT:i.operators.LT,c=!1===a.opts.unicode?i._`${n}.length`:i._`${(0,o.useFunc)(t.gen,r.default)}(${n})`;t.fail$data(i._`${c} ${l} ${s}`)}};e.default=s},5882:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o=i.operators,r={maximum:{okStr:"<=",ok:o.LTE,fail:o.GT},minimum:{okStr:">=",ok:o.GTE,fail:o.LT},exclusiveMaximum:{okStr:"<",ok:o.LT,fail:o.GTE},exclusiveMinimum:{okStr:">",ok:o.GT,fail:o.LTE}},s={message:({keyword:t,schemaCode:e})=>i.str`must be ${r[t].okStr} ${e}`,params:({keyword:t,schemaCode:e})=>i._`{comparison: ${r[t].okStr}, limit: ${e}}`},a={keyword:Object.keys(r),type:"number",schemaType:"number",$data:!0,error:s,code(t){const{keyword:e,data:n,schemaCode:o}=t;t.fail$data(i._`${n} ${r[e].fail} ${o} || isNaN(${n})`)}};e.default=a},4486:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o={keyword:["maxProperties","minProperties"],type:"object",schemaType:"number",$data:!0,error:{message({keyword:t,schemaCode:e}){const n="maxProperties"===t?"more":"fewer";return i.str`must NOT have ${n} than ${e} properties`},params:({schemaCode:t})=>i._`{limit: ${t}}`},code(t){const{keyword:e,data:n,schemaCode:o}=t,r="maxProperties"===e?i.operators.GT:i.operators.LT;t.fail$data(i._`Object.keys(${n}).length ${r} ${o}`)}};e.default=o},3439:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(9029),o={keyword:"multipleOf",type:"number",schemaType:"number",$data:!0,error:{message:({schemaCode:t})=>i.str`must be multiple of ${t}`,params:({schemaCode:t})=>i._`{multipleOf: ${t}}`},code(t){const{gen:e,data:n,schemaCode:o,it:r}=t,s=r.opts.multipleOfPrecision,a=e.let("res"),l=s?i._`Math.abs(Math.round(${a}) - ${a}) > 1e-${s}`:i._`${a} !== parseInt(${a})`;t.fail$data(i._`(${o} === 0 || (${a} = ${n}/${o}, ${l}))`)}};e.default=o},422:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(5765),o=n(9029),r={keyword:"pattern",type:"string",schemaType:"string",$data:!0,error:{message:({schemaCode:t})=>o.str`must match pattern "${t}"`,params:({schemaCode:t})=>o._`{pattern: ${t}}`},code(t){const{data:e,$data:n,schema:r,schemaCode:s,it:a}=t,l=a.opts.unicodeRegExp?"u":"",c=n?o._`(new RegExp(${s}, ${l}))`:(0,i.usePattern)(t,r);t.fail$data(o._`!${c}.test(${e})`)}};e.default=r},4003:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(5765),o=n(9029),r=n(4227),s={keyword:"required",type:"object",schemaType:"array",$data:!0,error:{message:({params:{missingProperty:t}})=>o.str`must have required property '${t}'`,params:({params:{missingProperty:t}})=>o._`{missingProperty: ${t}}`},code(t){const{gen:e,schema:n,schemaCode:s,data:a,$data:l,it:c}=t,{opts:h}=c;if(!l&&0===n.length)return;const u=n.length>=h.loopRequired;if(c.allErrors?function(){if(u||l)t.block$data(o.nil,d);else for(const e of n)(0,i.checkReportMissingProp)(t,e)}():function(){const r=e.let("missing");if(u||l){const n=e.let("valid",!0);t.block$data(n,(()=>function(n,r){t.setParams({missingProperty:n}),e.forOf(n,s,(()=>{e.assign(r,(0,i.propertyInData)(e,a,n,h.ownProperties)),e.if((0,o.not)(r),(()=>{t.error(),e.break()}))}),o.nil)}(r,n))),t.ok(n)}else e.if((0,i.checkMissingProp)(t,n,r)),(0,i.reportMissingProp)(t,r),e.else()}(),h.strictRequired){const e=t.parentSchema.properties,{definedProperties:i}=t.it;for(const t of n)if(void 0===(null==e?void 0:e[t])&&!i.has(t)){const e=`required property "${t}" is not defined at "${c.schemaEnv.baseId+c.errSchemaPath}" (strictRequired)`;(0,r.checkStrictMode)(c,e,c.opts.strictRequired)}}function d(){e.forOf("prop",s,(n=>{t.setParams({missingProperty:n}),e.if((0,i.noPropertyInData)(e,a,n,h.ownProperties),(()=>t.error()))}))}}};e.default=s},617:(t,e,n)=>{"use strict";Object.defineProperty(e,"__esModule",{value:!0});const i=n(208),o=n(9029),r=n(4227),s=n(6250),a={keyword:"uniqueItems",type:"array",schemaType:"boolean",$data:!0,error:{message:({params:{i:t,j:e}})=>o.str`must NOT have duplicate items (items ## ${e} and ${t} are identical)`,params:({params:{i:t,j:e}})=>o._`{i: ${t}, j: ${e}}`},code(t){const{gen:e,data:n,$data:a,schema:l,parentSchema:c,schemaCode:h,it:u}=t;if(!a&&!l)return;const d=e.let("valid"),p=c.items?(0,i.getSchemaTypes)(c.items):[];function m(r,s){const a=e.name("item"),l=(0,i.checkDataTypes)(p,a,u.opts.strictNumbers,i.DataType.Wrong),c=e.const("indices",o._`{}`);e.for(o._`;${r}--;`,(()=>{e.let(a,o._`${n}[${r}]`),e.if(l,o._`continue`),p.length>1&&e.if(o._`typeof ${a} == "string"`,o._`${a} += "_"`),e.if(o._`typeof ${c}[${a}] == "number"`,(()=>{e.assign(s,o._`${c}[${a}]`),t.error(),e.assign(d,!1).break()})).code(o._`${c}[${a}] = ${r}`)}))}function f(i,a){const l=(0,r.useFunc)(e,s.default),c=e.name("outer");e.label(c).for(o._`;${i}--;`,(()=>e.for(o._`${a} = ${i}; ${a}--;`,(()=>e.if(o._`${l}(${n}[${i}], ${n}[${a}])`,(()=>{t.error(),e.assign(d,!1).break(c)}))))))}t.block$data(d,(function(){const i=e.let("i",o._`${n}.length`),r=e.let("j");t.setParams({i,j:r}),e.assign(d,!0),e.if(o._`${i} > 1`,(()=>(p.length>0&&!p.some((t=>"object"===t||"array"===t))?m:f)(i,r)))}),o._`${h} === false`),t.ok(d)}};e.default=a},5488:(t,e,n)=>{"use strict";n.d(e,{A:()=>a});var i=n(1354),o=n.n(i),r=n(6314),s=n.n(r)()(o());s.push([t.id,"\n.ui-form.ui-tooltip .ui-input-root > label.ui-input-label:not(:empty) {\n /* min-width: 30px; /* Breaks right margin /**/\n}\n\n.ui-form.ui-tooltip .ui-input-root > div.ui-input-text:not(:empty) {\n margin-top: 6px;\n}","",{version:3,sources:["webpack://./css/cell-renderer.css"],names:[],mappings:";AACA;IACI,8CAA8C;AAClD;;AAEA;IACI,eAAe;AACnB",sourcesContent:["\n.ui-form.ui-tooltip .ui-input-root > label.ui-input-label:not(:empty) {\n /* min-width: 30px; /* Breaks right margin /**/\n}\n\n.ui-form.ui-tooltip .ui-input-root > div.ui-input-text:not(:empty) {\n margin-top: 6px;\n}"],sourceRoot:""}]);const a=s},5999:(t,e,n)=>{"use strict";n.d(e,{A:()=>a});var i=n(1354),o=n.n(i),r=n(6314),s=n.n(r)()(o());s.push([t.id,".macromolecule-cell-comp-analysis-host{\n max-height: 250px;\n overflow-y: scroll;\n}\n\n.macromolecule-cell-comp-analysis-bar{\n height: inherit;\n display: block;\n margin-top: 1.5px;\n margin-bottom: 1.5px;\n margin-right: 3px;\n}\n\n.macromolecule-cell-comp-analysis-value{\n display: flex;\n}","",{version:3,sources:["webpack://./css/composition-analysis.css"],names:[],mappings:"AAAA;IACI,iBAAiB;IACjB,kBAAkB;AACtB;;AAEA;IACI,eAAe;IACf,cAAc;IACd,iBAAiB;IACjB,oBAAoB;IACpB,iBAAiB;AACrB;;AAEA;IACI,aAAa;AACjB",sourcesContent:[".macromolecule-cell-comp-analysis-host{\n max-height: 250px;\n overflow-y: scroll;\n}\n\n.macromolecule-cell-comp-analysis-bar{\n height: inherit;\n display: block;\n margin-top: 1.5px;\n margin-bottom: 1.5px;\n margin-right: 3px;\n}\n\n.macromolecule-cell-comp-analysis-value{\n display: flex;\n}"],sourceRoot:""}]);const a=s},857:(t,e,n)=>{"use strict";n.d(e,{A:()=>a});var i=n(1354),o=n.n(i),r=n(6314),s=n.n(r)()(o());s.push([t.id,".monomer-manager-root .grok-sketcher {\n min-width: unset !important;\n}\n\n.monomer-manager-root {\n width: 100% !important;\n height: 100% !important;\n}\n\n.monomer-manager-sketcher .ketcher-host {\n height: 100% !important;\n width: unset !important;\n} \n\n.monomer-manager-root > div:first-child {\n flex-basis: 40% !important;\n}\n.monomer-manager-root > div:nth-child(2) {\n flex-basis: 60% !important;\n}\n\n.monomer-manager-root > div:first-child > .ui-form {\n max-width: unset !important;\n}\n\n.monomer-card-info-row {\n width: 100%;\n overflow: hidden;\n text-overflow: ellipsis;\n margin-bottom: 10px;\n}\n\n.monomer-card-info-row > div:nth-child(2) {\n white-space: nowrap;\n overflow: hidden;\n text-overflow: ellipsis;\n}\n\n.monomer-card-info-row > div:nth-child(1) {\n font-weight: bold;\n margin-right: 5px;\n text-wrap: nowrap;\n}\n\n.duplicate-monomer-symbol-row {\n visibility: visible !important;\n}\n\n.monomer-card-root {\n border: 2px solid var(--grey-2);\n border-radius: 5px;\n padding: 5px;\n margin: 5px;\n overflow: hidden;\n align-items: center;\n cursor: pointer;\n width: 200px;\n height: 300px;\n min-width: 200px;\n min-height: 300px;\n}\n\n.duplicate-monomers-virtual-view {\n width: 100% !important;\n overflow-x: clip;\n overflow-y: auto;\n}\n\n.monomer-manager-form-tab-control input.d4-invalid {\n background: #ff000030;\n}\n\n.monomer-lib-controls-form .ui-input-root {\n flex-wrap: nowrap !important;\n}","",{version:3,sources:["webpack://./css/monomer-manager.css"],names:[],mappings:"AAAA;IACI,2BAA2B;AAC/B;;AAEA;IACI,sBAAsB;IACtB,uBAAuB;AAC3B;;AAEA;IACI,uBAAuB;IACvB,uBAAuB;AAC3B;;AAEA;IACI,0BAA0B;AAC9B;AACA;IACI,0BAA0B;AAC9B;;AAEA;IACI,2BAA2B;AAC/B;;AAEA;IACI,WAAW;IACX,gBAAgB;IAChB,uBAAuB;IACvB,mBAAmB;AACvB;;AAEA;IACI,mBAAmB;IACnB,gBAAgB;IAChB,uBAAuB;AAC3B;;AAEA;IACI,iBAAiB;IACjB,iBAAiB;IACjB,iBAAiB;AACrB;;AAEA;IACI,8BAA8B;AAClC;;AAEA;IACI,+BAA+B;IAC/B,kBAAkB;IAClB,YAAY;IACZ,WAAW;IACX,gBAAgB;IAChB,mBAAmB;IACnB,eAAe;IACf,YAAY;IACZ,aAAa;IACb,gBAAgB;IAChB,iBAAiB;AACrB;;AAEA;IACI,sBAAsB;IACtB,gBAAgB;IAChB,gBAAgB;AACpB;;AAEA;IACI,qBAAqB;AACzB;;AAEA;IACI,4BAA4B;AAChC",sourcesContent:[".monomer-manager-root .grok-sketcher {\n min-width: unset !important;\n}\n\n.monomer-manager-root {\n width: 100% !important;\n height: 100% !important;\n}\n\n.monomer-manager-sketcher .ketcher-host {\n height: 100% !important;\n width: unset !important;\n} \n\n.monomer-manager-root > div:first-child {\n flex-basis: 40% !important;\n}\n.monomer-manager-root > div:nth-child(2) {\n flex-basis: 60% !important;\n}\n\n.monomer-manager-root > div:first-child > .ui-form {\n max-width: unset !important;\n}\n\n.monomer-card-info-row {\n width: 100%;\n overflow: hidden;\n text-overflow: ellipsis;\n margin-bottom: 10px;\n}\n\n.monomer-card-info-row > div:nth-child(2) {\n white-space: nowrap;\n overflow: hidden;\n text-overflow: ellipsis;\n}\n\n.monomer-card-info-row > div:nth-child(1) {\n font-weight: bold;\n margin-right: 5px;\n text-wrap: nowrap;\n}\n\n.duplicate-monomer-symbol-row {\n visibility: visible !important;\n}\n\n.monomer-card-root {\n border: 2px solid var(--grey-2);\n border-radius: 5px;\n padding: 5px;\n margin: 5px;\n overflow: hidden;\n align-items: center;\n cursor: pointer;\n width: 200px;\n height: 300px;\n min-width: 200px;\n min-height: 300px;\n}\n\n.duplicate-monomers-virtual-view {\n width: 100% !important;\n overflow-x: clip;\n overflow-y: auto;\n}\n\n.monomer-manager-form-tab-control input.d4-invalid {\n background: #ff000030;\n}\n\n.monomer-lib-controls-form .ui-input-root {\n flex-wrap: nowrap !important;\n}"],sourceRoot:""}]);const a=s},6369:(t,e,n)=>{"use strict";n.d(e,{A:()=>a});var i=n(1354),o=n.n(i),r=n(6314),s=n.n(r)()(o());s.push([t.id,".kalign-version {\n margin-bottom: 0;\n text-align: end;\n font-size: 12px;\n opacity: 0.8;\n}\nbutton.msa-params-button.ui-btn {\n justify-content: end;\n}","",{version:3,sources:["webpack://./css/msa.css"],names:[],mappings:"AAAA;IACI,gBAAgB;IAChB,eAAe;IACf,eAAe;IACf,YAAY;AAChB;AACA;IACI,oBAAoB;AACxB",sourcesContent:[".kalign-version {\n margin-bottom: 0;\n text-align: end;\n font-size: 12px;\n opacity: 0.8;\n}\nbutton.msa-params-button.ui-btn {\n justify-content: end;\n}"],sourceRoot:""}]);const a=s},7939:(t,e,n)=>{"use strict";n.d(e,{A:()=>a});var i=n(1354),o=n.n(i),r=n(6314),s=n.n(r)()(o());s.push([t.id,".scatter_plot_link {\n right: 10px;\n}\n\n.cliffs_div {\n flex-grow: initial!important;\n justify-content: flex-end;\n flex-wrap: wrap;\n}\n\n.cliffs_grid {\n margin: 0!important;\n}\n\n.ml-dim-reduction-settings-input i.grok-icon.grok-font-icon-settings {\n font-size: 18px;\n position: absolute;\n height: 28px;\n}\n\n.ml-dim-reduction-settings-input i.grok-icon.grok-font-icon-settings:not(.ml-dim-reduction-column-editor-input-root i) {\n left: -20px;\n}\n.dlg-dimensionality-reduction.ui-form, .dlg-markov-clustering.ui-form, .dlg-markov-clustering.ui-form .ui-form, .dlg-dimensionality-reduction.ui-form .ui-form {\n max-width: unset;\n}\n\n.ml-dim-reduction-column-editor-input-root label {\n display: none !important;\n}\n\n.dim-reduction-dialog-form > .ui-input-root, .dim-reduction-dialog-form > div > .ui-input-root {\n margin-left: 10px;\n}\n\n.ml-dim-reduction-column-editor-input-root input, .ml-dim-reduction-column-editor-input-root select {\n margin-left: 20px !important;\n}\n\nh3.ml-dim-reduction-column-editor-input-root {\n margin: 0 !important;\n}\n\n.ml-dim-reduction-column-editor-root, .ml-dim-reduction-column-editor-header-root {\n display: flex;\n flex-direction: row;\n align-items: center;\n margin-bottom: 10px !important;\n width: 700px !important;\n}\n\n.ml-dim-reduction-column-editor-column-title {\n text-overflow: ellipsis;\n overflow: hidden;\n}\n\n.ml-dim-reduction-column-editor-header-root > h1:not(:first-child) {\n margin-left: 20px !important;\n}\n\n.ml-dim-reduction-column-editor-table-root .header > td:not(:first-child) {\n padding-left: 32px;\n}","",{version:3,sources:["webpack://./node_modules/@datagrok-libraries/ml/css/styles.css"],names:[],mappings:"AAAA;IACI,WAAW;AACf;;AAEA;IACI,4BAA4B;IAC5B,yBAAyB;IACzB,eAAe;AACnB;;AAEA;GACG,mBAAmB;AACtB;;AAEA;IACI,eAAe;IACf,kBAAkB;IAClB,YAAY;AAChB;;AAEA;IACI,WAAW;AACf;AACA;IACI,gBAAgB;AACpB;;AAEA;IACI,wBAAwB;AAC5B;;AAEA;IACI,iBAAiB;AACrB;;AAEA;IACI,4BAA4B;AAChC;;AAEA;IACI,oBAAoB;AACxB;;AAEA;IACI,aAAa;IACb,mBAAmB;IACnB,mBAAmB;IACnB,8BAA8B;IAC9B,uBAAuB;AAC3B;;AAEA;IACI,uBAAuB;IACvB,gBAAgB;AACpB;;AAEA;IACI,4BAA4B;AAChC;;AAEA;IACI,kBAAkB;AACtB",sourcesContent:[".scatter_plot_link {\n right: 10px;\n}\n\n.cliffs_div {\n flex-grow: initial!important;\n justify-content: flex-end;\n flex-wrap: wrap;\n}\n\n.cliffs_grid {\n margin: 0!important;\n}\n\n.ml-dim-reduction-settings-input i.grok-icon.grok-font-icon-settings {\n font-size: 18px;\n position: absolute;\n height: 28px;\n}\n\n.ml-dim-reduction-settings-input i.grok-icon.grok-font-icon-settings:not(.ml-dim-reduction-column-editor-input-root i) {\n left: -20px;\n}\n.dlg-dimensionality-reduction.ui-form, .dlg-markov-clustering.ui-form, .dlg-markov-clustering.ui-form .ui-form, .dlg-dimensionality-reduction.ui-form .ui-form {\n max-width: unset;\n}\n\n.ml-dim-reduction-column-editor-input-root label {\n display: none !important;\n}\n\n.dim-reduction-dialog-form > .ui-input-root, .dim-reduction-dialog-form > div > .ui-input-root {\n margin-left: 10px;\n}\n\n.ml-dim-reduction-column-editor-input-root input, .ml-dim-reduction-column-editor-input-root select {\n margin-left: 20px !important;\n}\n\nh3.ml-dim-reduction-column-editor-input-root {\n margin: 0 !important;\n}\n\n.ml-dim-reduction-column-editor-root, .ml-dim-reduction-column-editor-header-root {\n display: flex;\n flex-direction: row;\n align-items: center;\n margin-bottom: 10px !important;\n width: 700px !important;\n}\n\n.ml-dim-reduction-column-editor-column-title {\n text-overflow: ellipsis;\n overflow: hidden;\n}\n\n.ml-dim-reduction-column-editor-header-root > h1:not(:first-child) {\n margin-left: 20px !important;\n}\n\n.ml-dim-reduction-column-editor-table-root .header > td:not(:first-child) {\n padding-left: 32px;\n}"],sourceRoot:""}]);const a=s},3017:(t,e,n)=>{"use strict";n.d(e,{A:()=>a});var i=n(1354),o=n.n(i),r=n(6314),s=n.n(r)()(o());s.push([t.id,".monomer-lib-controls-form {\n margin-left: auto;\n margin-right: auto;\n display: flex;\n flex-direction: column;\n align-items: center;\n min-width: 220px;\n width: 100%;\n\n}\n","",{version:3,sources:["webpack://./src/utils/monomer-lib/library-file-manager/style.css"],names:[],mappings:"AAAA;EACE,iBAAiB;EACjB,kBAAkB;EAClB,aAAa;EACb,sBAAsB;EACtB,mBAAmB;EACnB,gBAAgB;EAChB,WAAW;;AAEb",sourcesContent:[".monomer-lib-controls-form {\n margin-left: auto;\n margin-right: auto;\n display: flex;\n flex-direction: column;\n align-items: center;\n min-width: 220px;\n width: 100%;\n\n}\n"],sourceRoot:""}]);const a=s},6314:t=>{"use strict";t.exports=function(t){var e=[];return e.toString=function(){return this.map((function(e){var n="",i=void 0!==e[5];return e[4]&&(n+="@supports (".concat(e[4],") {")),e[2]&&(n+="@media ".concat(e[2]," {")),i&&(n+="@layer".concat(e[5].length>0?" ".concat(e[5]):""," {")),n+=t(e),i&&(n+="}"),e[2]&&(n+="}"),e[4]&&(n+="}"),n})).join("")},e.i=function(t,n,i,o,r){"string"==typeof t&&(t=[[null,t,void 0]]);var s={};if(i)for(var a=0;a<this.length;a++){var l=this[a][0];null!=l&&(s[l]=!0)}for(var c=0;c<t.length;c++){var h=[].concat(t[c]);i&&s[h[0]]||(void 0!==r&&(void 0===h[5]||(h[1]="@layer".concat(h[5].length>0?" ".concat(h[5]):""," {").concat(h[1],"}")),h[5]=r),n&&(h[2]?(h[1]="@media ".concat(h[2]," {").concat(h[1],"}"),h[2]=n):h[2]=n),o&&(h[4]?(h[1]="@supports (".concat(h[4],") {").concat(h[1],"}"),h[4]=o):h[4]="".concat(o)),e.push(h))}},e}},1354:t=>{"use strict";t.exports=function(t){var e=t[1],n=t[3];if(!n)return e;if("function"==typeof btoa){var i=btoa(unescape(encodeURIComponent(JSON.stringify(n)))),o="sourceMappingURL=data:application/json;charset=utf-8;base64,".concat(i),r="/*# ".concat(o," */");return[e].concat([r]).join("\n")}return[e].join("\n")}},2017:t=>{"use strict";t.exports=function t(e,n){if(e===n)return!0;if(e&&n&&"object"==typeof e&&"object"==typeof n){if(e.constructor!==n.constructor)return!1;var i,o,r;if(Array.isArray(e)){if((i=e.length)!=n.length)return!1;for(o=i;0!=o--;)if(!t(e[o],n[o]))return!1;return!0}if(e.constructor===RegExp)return e.source===n.source&&e.flags===n.flags;if(e.valueOf!==Object.prototype.valueOf)return e.valueOf()===n.valueOf();if(e.toString!==Object.prototype.toString)return e.toString()===n.toString();if((i=(r=Object.keys(e)).length)!==Object.keys(n).length)return!1;for(o=i;0!=o--;)if(!Object.prototype.hasOwnProperty.call(n,r[o]))return!1;for(o=i;0!=o--;){var s=r[o];if(!t(e[s],n[s]))return!1}return!0}return e!=e&&n!=n}},9982:function(t,e,n){var i;!function(){var e={};!function(t){"use strict";t.__esModule=!0,t.digestLength=32,t.blockSize=64;var e=new Uint32Array([1116352408,1899447441,3049323471,3921009573,961987163,1508970993,2453635748,2870763221,3624381080,310598401,607225278,1426881987,1925078388,2162078206,2614888103,3248222580,3835390401,4022224774,264347078,604807628,770255983,1249150122,1555081692,1996064986,2554220882,2821834349,2952996808,3210313671,3336571891,3584528711,113926993,338241895,666307205,773529912,1294757372,1396182291,1695183700,1986661051,2177026350,2456956037,2730485921,2820302411,3259730800,3345764771,3516065817,3600352804,4094571909,275423344,430227734,506948616,659060556,883997877,958139571,1322822218,1537002063,1747873779,1955562222,2024104815,2227730452,2361852424,2428436474,2756734187,3204031479,3329325298]);function n(t,n,i,o,r){for(var s,a,l,c,h,u,d,p,m,f,g,y,b;r>=64;){for(s=n[0],a=n[1],l=n[2],c=n[3],h=n[4],u=n[5],d=n[6],p=n[7],f=0;f<16;f++)g=o+4*f,t[f]=(255&i[g])<<24|(255&i[g+1])<<16|(255&i[g+2])<<8|255&i[g+3];for(f=16;f<64;f++)y=((m=t[f-2])>>>17|m<<15)^(m>>>19|m<<13)^m>>>10,b=((m=t[f-15])>>>7|m<<25)^(m>>>18|m<<14)^m>>>3,t[f]=(y+t[f-7]|0)+(b+t[f-16]|0);for(f=0;f<64;f++)y=(((h>>>6|h<<26)^(h>>>11|h<<21)^(h>>>25|h<<7))+(h&u^~h&d)|0)+(p+(e[f]+t[f]|0)|0)|0,b=((s>>>2|s<<30)^(s>>>13|s<<19)^(s>>>22|s<<10))+(s&a^s&l^a&l)|0,p=d,d=u,u=h,h=c+y|0,c=l,l=a,a=s,s=y+b|0;n[0]+=s,n[1]+=a,n[2]+=l,n[3]+=c,n[4]+=h,n[5]+=u,n[6]+=d,n[7]+=p,o+=64,r-=64}return o}var i=function(){function e(){this.digestLength=t.digestLength,this.blockSize=t.blockSize,this.state=new Int32Array(8),this.temp=new Int32Array(64),this.buffer=new Uint8Array(128),this.bufferLength=0,this.bytesHashed=0,this.finished=!1,this.reset()}return e.prototype.reset=function(){return this.state[0]=1779033703,this.state[1]=3144134277,this.state[2]=1013904242,this.state[3]=2773480762,this.state[4]=1359893119,this.state[5]=2600822924,this.state[6]=528734635,this.state[7]=1541459225,this.bufferLength=0,this.bytesHashed=0,this.finished=!1,this},e.prototype.clean=function(){for(var t=0;t<this.buffer.length;t++)this.buffer[t]=0;for(t=0;t<this.temp.length;t++)this.temp[t]=0;this.reset()},e.prototype.update=function(t,e){if(void 0===e&&(e=t.length),this.finished)throw new Error("SHA256: can't update because hash was finished.");var i=0;if(this.bytesHashed+=e,this.bufferLength>0){for(;this.bufferLength<64&&e>0;)this.buffer[this.bufferLength++]=t[i++],e--;64===this.bufferLength&&(n(this.temp,this.state,this.buffer,0,64),this.bufferLength=0)}for(e>=64&&(i=n(this.temp,this.state,t,i,e),e%=64);e>0;)this.buffer[this.bufferLength++]=t[i++],e--;return this},e.prototype.finish=function(t){if(!this.finished){var e=this.bytesHashed,i=this.bufferLength,o=e/536870912|0,r=e<<3,s=e%64<56?64:128;this.buffer[i]=128;for(var a=i+1;a<s-8;a++)this.buffer[a]=0;this.buffer[s-8]=o>>>24&255,this.buffer[s-7]=o>>>16&255,this.buffer[s-6]=o>>>8&255,this.buffer[s-5]=o>>>0&255,this.buffer[s-4]=r>>>24&255,this.buffer[s-3]=r>>>16&255,this.buffer[s-2]=r>>>8&255,this.buffer[s-1]=r>>>0&255,n(this.temp,this.state,this.buffer,0,s),this.finished=!0}for(a=0;a<8;a++)t[4*a+0]=this.state[a]>>>24&255,t[4*a+1]=this.state[a]>>>16&255,t[4*a+2]=this.state[a]>>>8&255,t[4*a+3]=this.state[a]>>>0&255;return this},e.prototype.digest=function(){var t=new Uint8Array(this.digestLength);return this.finish(t),t},e.prototype._saveState=function(t){for(var e=0;e<this.state.length;e++)t[e]=this.state[e]},e.prototype._restoreState=function(t,e){for(var n=0;n<this.state.length;n++)this.state[n]=t[n];this.bytesHashed=e,this.finished=!1,this.bufferLength=0},e}();t.Hash=i;var o=function(){function t(t){this.inner=new i,this.outer=new i,this.blockSize=this.inner.blockSize,this.digestLength=this.inner.digestLength;var e=new Uint8Array(this.blockSize);if(t.length>this.blockSize)(new i).update(t).finish(e).clean();else for(var n=0;n<t.length;n++)e[n]=t[n];for(n=0;n<e.length;n++)e[n]^=54;for(this.inner.update(e),n=0;n<e.length;n++)e[n]^=106;for(this.outer.update(e),this.istate=new Uint32Array(8),this.ostate=new Uint32Array(8),this.inner._saveState(this.istate),this.outer._saveState(this.ostate),n=0;n<e.length;n++)e[n]=0}return t.prototype.reset=function(){return this.inner._restoreState(this.istate,this.inner.blockSize),this.outer._restoreState(this.ostate,this.outer.blockSize),this},t.prototype.clean=function(){for(var t=0;t<this.istate.length;t++)this.ostate[t]=this.istate[t]=0;this.inner.clean(),this.outer.clean()},t.prototype.update=function(t){return this.inner.update(t),this},t.prototype.finish=function(t){return this.outer.finished?this.outer.finish(t):(this.inner.finish(t),this.outer.update(t,this.digestLength).finish(t)),this},t.prototype.digest=function(){var t=new Uint8Array(this.digestLength);return this.finish(t),t},t}();function r(t){var e=(new i).update(t),n=e.digest();return e.clean(),n}function s(t,e){var n=new o(t).update(e),i=n.digest();return n.clean(),i}function a(t,e,n,i){var o=i[0];if(0===o)throw new Error("hkdf: cannot expand more");e.reset(),o>1&&e.update(t),n&&e.update(n),e.update(i),e.finish(t),i[0]++}t.HMAC=o,t.hash=r,t.default=r,t.hmac=s;var l=new Uint8Array(t.digestLength);t.hkdf=function(t,e,n,i){void 0===e&&(e=l),void 0===i&&(i=32);for(var r=new Uint8Array([1]),c=s(e,t),h=new o(c),u=new Uint8Array(h.digestLength),d=u.length,p=new Uint8Array(i),m=0;m<i;m++)d===u.length&&(a(u,h,n,r),d=0),p[m]=u[d++];return h.clean(),u.fill(0),r.fill(0),p},t.pbkdf2=function(t,e,n,i){for(var r=new o(t),s=r.digestLength,a=new Uint8Array(4),l=new Uint8Array(s),c=new Uint8Array(s),h=new Uint8Array(i),u=0;u*s<i;u++){var d=u+1;a[0]=d>>>24&255,a[1]=d>>>16&255,a[2]=d>>>8&255,a[3]=d>>>0&255,r.reset(),r.update(e),r.update(a),r.finish(c);for(var p=0;p<s;p++)l[p]=c[p];for(p=2;p<=n;p++){r.reset(),r.update(c).finish(c);for(var m=0;m<s;m++)l[m]^=c[m]}for(p=0;p<s&&u*s+p<i;p++)h[u*s+p]=l[p]}for(u=0;u<s;u++)l[u]=c[u]=0;for(u=0;u<4;u++)a[u]=0;return r.clean(),h}}(e);var o=e.default;for(var r in e)o[r]=e[r];"object"==typeof t.exports?t.exports=o:void 0===(i=function(){return o}.call(e,n,e,t))||(t.exports=i)}()},2787:(t,e,n)=>{"use strict";n.d(e,{I:()=>o});const i=new Uint32Array(65536),o=(t,e)=>{if(t.length<e.length){const n=e;e=t,t=n}return 0===e.length?t.length:t.length<=32?((t,e)=>{const n=t.length,o=e.length,r=1<<n-1;let s=-1,a=0,l=n,c=n;for(;c--;)i[t.charCodeAt(c)]|=1<<c;for(c=0;c<o;c++){let t=i[e.charCodeAt(c)];const n=t|a;t|=(t&s)+s^s,a|=~(t|s),s&=t,a&r&&l++,s&r&&l--,a=a<<1|1,s=s<<1|~(n|a),a&=n}for(c=n;c--;)i[t.charCodeAt(c)]=0;return l})(t,e):((t,e)=>{const n=e.length,o=t.length,r=[],s=[],a=Math.ceil(n/32),l=Math.ceil(o/32);for(let t=0;t<a;t++)s[t]=-1,r[t]=0;let c=0;for(;c<l-1;c++){let a=0,l=-1;const h=32*c,u=Math.min(32,o)+h;for(let e=h;e<u;e++)i[t.charCodeAt(e)]|=1<<e;for(let t=0;t<n;t++){const n=i[e.charCodeAt(t)],o=s[t/32|0]>>>t&1,c=r[t/32|0]>>>t&1,h=n|a,u=((n|c)&l)+l^l|n|c;let d=a|~(u|l),p=l&u;d>>>31^o&&(s[t/32|0]^=1<<t),p>>>31^c&&(r[t/32|0]^=1<<t),d=d<<1|o,p=p<<1|c,l=p|~(h|d),a=d&h}for(let e=h;e<u;e++)i[t.charCodeAt(e)]=0}let h=0,u=-1;const d=32*c,p=Math.min(32,o-d)+d;for(let e=d;e<p;e++)i[t.charCodeAt(e)]|=1<<e;let m=o;for(let t=0;t<n;t++){const n=i[e.charCodeAt(t)],a=s[t/32|0]>>>t&1,l=r[t/32|0]>>>t&1,c=n|h,d=((n|l)&u)+u^u|n|l;let p=h|~(d|u),f=u&d;m+=p>>>o-1&1,m-=f>>>o-1&1,p>>>31^a&&(s[t/32|0]^=1<<t),f>>>31^l&&(r[t/32|0]^=1<<t),p=p<<1|a,f=f<<1|l,u=f|~(c|p),h=p&c}for(let e=d;e<p;e++)i[t.charCodeAt(e)]=0;return m})(t,e)}},9937:t=>{t.exports={linLogMode:!1,outboundAttractionDistribution:!1,adjustSizes:!1,edgeWeightInfluence:1,scalingRatio:1,strongGravityMode:!1,gravity:1,slowDown:1,barnesHutOptimize:!1,barnesHutTheta:.5}},1782:(t,e)=>{e.assign=function(t){t=t||{};var e,n,i,o=Array.prototype.slice.call(arguments).slice(1);for(e=0,i=o.length;e<i;e++)if(o[e])for(n in o[e])t[n]=o[e][n];return t},e.validateSettings=function(t){return"linLogMode"in t&&"boolean"!=typeof t.linLogMode?{message:"the `linLogMode` setting should be a boolean."}:"outboundAttractionDistribution"in t&&"boolean"!=typeof t.outboundAttractionDistribution?{message:"the `outboundAttractionDistribution` setting should be a boolean."}:"adjustSizes"in t&&"boolean"!=typeof t.adjustSizes?{message:"the `adjustSizes` setting should be a boolean."}:"edgeWeightInfluence"in t&&"number"!=typeof t.edgeWeightInfluence?{message:"the `edgeWeightInfluence` setting should be a number."}:!("scalingRatio"in t)||"number"==typeof t.scalingRatio&&t.scalingRatio>=0?"strongGravityMode"in t&&"boolean"!=typeof t.strongGravityMode?{message:"the `strongGravityMode` setting should be a boolean."}:!("gravity"in t)||"number"==typeof t.gravity&&t.gravity>=0?"slowDown"in t&&!("number"==typeof t.slowDown||t.slowDown>=0)?{message:"the `slowDown` setting should be a number >= 0."}:"barnesHutOptimize"in t&&"boolean"!=typeof t.barnesHutOptimize?{message:"the `barnesHutOptimize` setting should be a boolean."}:!("barnesHutTheta"in t)||"number"==typeof t.barnesHutTheta&&t.barnesHutTheta>=0?null:{message:"the `barnesHutTheta` setting should be a number >= 0."}:{message:"the `gravity` setting should be a number >= 0."}:{message:"the `scalingRatio` setting should be a number >= 0."}},e.graphToByteArrays=function(t,e){var n,i=t.order,o=t.size,r={},s=new Float32Array(10*i),a=new Float32Array(3*o);return n=0,t.forEachNode((function(t,e){r[t]=n,s[n]=e.x,s[n+1]=e.y,s[n+2]=0,s[n+3]=0,s[n+4]=0,s[n+5]=0,s[n+6]=1,s[n+7]=1,s[n+8]=e.size||1,s[n+9]=e.fixed?1:0,n+=10})),n=0,t.forEachEdge((function(t,i,o,l,c,h,u){var d=r[o],p=r[l],m=e(t,i,o,l,c,h,u);s[d+6]+=m,s[p+6]+=m,a[n]=d,a[n+1]=p,a[n+2]=m,n+=3})),{nodes:s,edges:a}},e.assignLayoutChanges=function(t,e,n){var i=0;t.updateEachNodeAttributes((function(t,o){return o.x=e[i],o.y=e[i+1],i+=10,n?n(t,o):o}))},e.readGraphPositions=function(t,e){var n=0;t.forEachNode((function(t,i){e[n]=i.x,e[n+1]=i.y,n+=10}))},e.collectLayoutChanges=function(t,e,n){for(var i=t.nodes(),o={},r=0,s=0,a=e.length;r<a;r+=10){if(n){var l=Object.assign({},t.getNodeAttributes(i[s]));l.x=e[r],l.y=e[r+1],l=n(i[s],l),o[i[s]]={x:l.x,y:l.y}}else o[i[s]]={x:e[r],y:e[r+1]};s++}return o},e.createWorker=function(t){var e=window.URL||window.webkitURL,n=t.toString(),i=e.createObjectURL(new Blob(["("+n+").call(this);"],{type:"text/javascript"})),o=new Worker(i);return e.revokeObjectURL(i),o}},8903:(t,e,n)=>{var i=n(1736),o=n(8153).Fd,r=n(2561),s=n(1782),a=n(9937);function l(t,e,n){if(!i(e))throw new Error("graphology-layout-forceatlas2: the given graph is not a valid graphology instance.");"number"==typeof n&&(n={iterations:n});var l=n.iterations;if("number"!=typeof l)throw new Error("graphology-layout-forceatlas2: invalid number of iterations.");if(l<=0)throw new Error("graphology-layout-forceatlas2: you should provide a positive number of iterations.");var c=o("getEdgeWeight"in n?n.getEdgeWeight:"weight").fromEntry,h="function"==typeof n.outputReducer?n.outputReducer:null,u=s.assign({},a,n.settings),d=s.validateSettings(u);if(d)throw new Error("graphology-layout-forceatlas2: "+d.message);var p,m=s.graphToByteArrays(e,c);for(p=0;p<l;p++)r(u,m.nodes,m.edges);if(!t)return s.collectLayoutChanges(e,m.nodes);s.assignLayoutChanges(e,m.nodes,h)}var c=l.bind(null,!1);c.assign=l.bind(null,!0),c.inferSettings=function(t){var e="number"==typeof t?t:t.order;return{barnesHutOptimize:e>2e3,strongGravityMode:!0,gravity:.05,scalingRatio:10,slowDown:1+Math.log(e)}},t.exports=c},2561:t=>{var e=10;t.exports=function(t,n,i){var o,r,s,a,l,c,h,u,d,p,m,f,g,y,b,v,w,C,A,S,x,E,T,_=n.length,M=i.length,I=t.adjustSizes,L=t.barnesHutTheta*t.barnesHutTheta,N=[];for(s=0;s<_;s+=e)n[s+4]=n[s+2],n[s+5]=n[s+3],n[s+2]=0,n[s+3]=0;if(t.outboundAttractionDistribution){for(m=0,s=0;s<_;s+=e)m+=n[s+6];m/=_/e}if(t.barnesHutOptimize){var P,$,R,k=1/0,O=-1/0,H=1/0,G=-1/0;for(s=0;s<_;s+=e)k=Math.min(k,n[s+0]),O=Math.max(O,n[s+0]),H=Math.min(H,n[s+1]),G=Math.max(G,n[s+1]);var F=O-k,D=G-H;for(F>D?G=(H-=(F-D)/2)+F:O=(k-=(D-F)/2)+D,N[0]=-1,N[1]=(k+O)/2,N[2]=(H+G)/2,N[3]=Math.max(O-k,G-H),N[4]=-1,N[5]=-1,N[6]=0,N[7]=0,N[8]=0,o=1,s=0;s<_;s+=e)for(r=0,R=3;;){if(!(N[r+5]>=0)){if(N[r+0]<0){N[r+0]=s;break}if(N[r+5]=9*o,u=N[r+3]/2,N[(d=N[r+5])+0]=-1,N[d+1]=N[r+1]-u,N[d+2]=N[r+2]-u,N[d+3]=u,N[d+4]=d+9,N[d+5]=-1,N[d+6]=0,N[d+7]=0,N[d+8]=0,N[(d+=9)+0]=-1,N[d+1]=N[r+1]-u,N[d+2]=N[r+2]+u,N[d+3]=u,N[d+4]=d+9,N[d+5]=-1,N[d+6]=0,N[d+7]=0,N[d+8]=0,N[(d+=9)+0]=-1,N[d+1]=N[r+1]+u,N[d+2]=N[r+2]-u,N[d+3]=u,N[d+4]=d+9,N[d+5]=-1,N[d+6]=0,N[d+7]=0,N[d+8]=0,N[(d+=9)+0]=-1,N[d+1]=N[r+1]+u,N[d+2]=N[r+2]+u,N[d+3]=u,N[d+4]=N[r+4],N[d+5]=-1,N[d+6]=0,N[d+7]=0,N[d+8]=0,o+=4,P=n[N[r+0]+0]<N[r+1]?n[N[r+0]+1]<N[r+2]?N[r+5]:N[r+5]+9:n[N[r+0]+1]<N[r+2]?N[r+5]+18:N[r+5]+27,N[r+6]=n[N[r+0]+6],N[r+7]=n[N[r+0]+0],N[r+8]=n[N[r+0]+1],N[P+0]=N[r+0],N[r+0]=-1,P===($=n[s+0]<N[r+1]?n[s+1]<N[r+2]?N[r+5]:N[r+5]+9:n[s+1]<N[r+2]?N[r+5]+18:N[r+5]+27)){if(R--){r=P;continue}R=3;break}N[$+0]=s;break}P=n[s+0]<N[r+1]?n[s+1]<N[r+2]?N[r+5]:N[r+5]+9:n[s+1]<N[r+2]?N[r+5]+18:N[r+5]+27,N[r+7]=(N[r+7]*N[r+6]+n[s+0]*n[s+6])/(N[r+6]+n[s+6]),N[r+8]=(N[r+8]*N[r+6]+n[s+1]*n[s+6])/(N[r+6]+n[s+6]),N[r+6]+=n[s+6],r=P}}if(t.barnesHutOptimize){for(f=t.scalingRatio,s=0;s<_;s+=e)for(r=0;;)if(N[r+5]>=0){if(v=Math.pow(n[s+0]-N[r+7],2)+Math.pow(n[s+1]-N[r+8],2),4*(p=N[r+3])*p/v<L){if(g=n[s+0]-N[r+7],y=n[s+1]-N[r+8],!0===I?v>0?(w=f*n[s+6]*N[r+6]/v,n[s+2]+=g*w,n[s+3]+=y*w):v<0&&(w=-f*n[s+6]*N[r+6]/Math.sqrt(v),n[s+2]+=g*w,n[s+3]+=y*w):v>0&&(w=f*n[s+6]*N[r+6]/v,n[s+2]+=g*w,n[s+3]+=y*w),(r=N[r+4])<0)break;continue}r=N[r+5]}else if((c=N[r+0])>=0&&c!==s&&(v=(g=n[s+0]-n[c+0])*g+(y=n[s+1]-n[c+1])*y,!0===I?v>0?(w=f*n[s+6]*n[c+6]/v,n[s+2]+=g*w,n[s+3]+=y*w):v<0&&(w=-f*n[s+6]*n[c+6]/Math.sqrt(v),n[s+2]+=g*w,n[s+3]+=y*w):v>0&&(w=f*n[s+6]*n[c+6]/v,n[s+2]+=g*w,n[s+3]+=y*w)),(r=N[r+4])<0)break}else for(f=t.scalingRatio,a=0;a<_;a+=e)for(l=0;l<a;l+=e)g=n[a+0]-n[l+0],y=n[a+1]-n[l+1],!0===I?(v=Math.sqrt(g*g+y*y)-n[a+8]-n[l+8])>0?(w=f*n[a+6]*n[l+6]/v/v,n[a+2]+=g*w,n[a+3]+=y*w,n[l+2]-=g*w,n[l+3]-=y*w):v<0&&(w=100*f*n[a+6]*n[l+6],n[a+2]+=g*w,n[a+3]+=y*w,n[l+2]-=g*w,n[l+3]-=y*w):(v=Math.sqrt(g*g+y*y))>0&&(w=f*n[a+6]*n[l+6]/v/v,n[a+2]+=g*w,n[a+3]+=y*w,n[l+2]-=g*w,n[l+3]-=y*w);for(d=t.gravity/t.scalingRatio,f=t.scalingRatio,s=0;s<_;s+=e)w=0,g=n[s+0],y=n[s+1],v=Math.sqrt(Math.pow(g,2)+Math.pow(y,2)),t.strongGravityMode?v>0&&(w=f*n[s+6]*d):v>0&&(w=f*n[s+6]*d/v),n[s+2]-=g*w,n[s+3]-=y*w;for(f=1*(t.outboundAttractionDistribution?m:1),h=0;h<M;h+=3)a=i[h+0],l=i[h+1],u=i[h+2],b=Math.pow(u,t.edgeWeightInfluence),g=n[a+0]-n[l+0],y=n[a+1]-n[l+1],!0===I?(v=Math.sqrt(g*g+y*y)-n[a+8]-n[l+8],t.linLogMode?t.outboundAttractionDistribution?v>0&&(w=-f*b*Math.log(1+v)/v/n[a+6]):v>0&&(w=-f*b*Math.log(1+v)/v):t.outboundAttractionDistribution?v>0&&(w=-f*b/n[a+6]):v>0&&(w=-f*b)):(v=Math.sqrt(Math.pow(g,2)+Math.pow(y,2)),t.linLogMode?t.outboundAttractionDistribution?v>0&&(w=-f*b*Math.log(1+v)/v/n[a+6]):v>0&&(w=-f*b*Math.log(1+v)/v):t.outboundAttractionDistribution?(v=1,w=-f*b/n[a+6]):(v=1,w=-f*b)),v>0&&(n[a+2]+=g*w,n[a+3]+=y*w,n[l+2]-=g*w,n[l+3]-=y*w);if(!0===I)for(s=0;s<_;s+=e)1!==n[s+9]&&((C=Math.sqrt(Math.pow(n[s+2],2)+Math.pow(n[s+3],2)))>10&&(n[s+2]=10*n[s+2]/C,n[s+3]=10*n[s+3]/C),A=n[s+6]*Math.sqrt((n[s+4]-n[s+2])*(n[s+4]-n[s+2])+(n[s+5]-n[s+3])*(n[s+5]-n[s+3])),S=Math.sqrt((n[s+4]+n[s+2])*(n[s+4]+n[s+2])+(n[s+5]+n[s+3])*(n[s+5]+n[s+3]))/2,x=.1*Math.log(1+S)/(1+Math.sqrt(A)),E=n[s+0]+n[s+2]*(x/t.slowDown),n[s+0]=E,T=n[s+1]+n[s+3]*(x/t.slowDown),n[s+1]=T);else for(s=0;s<_;s+=e)1!==n[s+9]&&(A=n[s+6]*Math.sqrt((n[s+4]-n[s+2])*(n[s+4]-n[s+2])+(n[s+5]-n[s+3])*(n[s+5]-n[s+3])),S=Math.sqrt((n[s+4]+n[s+2])*(n[s+4]+n[s+2])+(n[s+5]+n[s+3])*(n[s+5]+n[s+3]))/2,x=n[s+7]*Math.log(1+S)/(1+Math.sqrt(A)),n[s+7]=Math.min(1,Math.sqrt(x*(Math.pow(n[s+2],2)+Math.pow(n[s+3],2))/(1+Math.sqrt(A)))),E=n[s+0]+n[s+2]*(x/t.slowDown),n[s+0]=E,T=n[s+1]+n[s+3]*(x/t.slowDown),n[s+1]=T);return{}}},8153:(t,e)=>{function n(t){return"number"!=typeof t||isNaN(t)?1:t}e.Fd=function(t){return function(t,e){var n={},i=function(t){return void 0===t?e:t};"function"==typeof e&&(i=e);var o=function(e){return i(e[t])},r=function(){return i(void 0)};return"string"==typeof t?(n.fromAttributes=o,n.fromGraph=function(t,e){return o(t.getEdgeAttributes(e))},n.fromEntry=function(t,e){return o(e)},n.fromPartialEntry=n.fromEntry,n.fromMinimalEntry=n.fromEntry):"function"==typeof t?(n.fromAttributes=function(){throw new Error("graphology-utils/getters/createEdgeValueGetter: irrelevant usage.")},n.fromGraph=function(e,n){var o=e.extremities(n);return i(t(n,e.getEdgeAttributes(n),o[0],o[1],e.getNodeAttributes(o[0]),e.getNodeAttributes(o[1]),e.isUndirected(n)))},n.fromEntry=function(e,n,o,r,s,a,l){return i(t(e,n,o,r,s,a,l))},n.fromPartialEntry=function(e,n,o,r){return i(t(e,n,o,r))},n.fromMinimalEntry=function(e,n){return i(t(e,n))}):(n.fromAttributes=r,n.fromGraph=r,n.fromEntry=r,n.fromMinimalEntry=r),n}(t,n)}},1736:t=>{t.exports=function(t){return null!==t&&"object"==typeof t&&"function"==typeof t.addUndirectedEdgeWithKey&&"function"==typeof t.dropNode&&"boolean"==typeof t.multi}},934:function(t){t.exports=function(){"use strict";function t(e){return(t="function"==typeof Symbol&&"symbol"==typeof Symbol.iterator?function(t){return typeof t}:function(t){return t&&"function"==typeof Symbol&&t.constructor===Symbol&&t!==Symbol.prototype?"symbol":typeof t})(e)}function e(t,e){t.prototype=Object.create(e.prototype),t.prototype.constructor=t,i(t,e)}function n(t){return n=Object.setPrototypeOf?Object.getPrototypeOf.bind():function(t){return t.__proto__||Object.getPrototypeOf(t)},n(t)}function i(t,e){return i=Object.setPrototypeOf?Object.setPrototypeOf.bind():function(t,e){return t.__proto__=e,t},i(t,e)}function o(t,e,n){return o=function(){if("undefined"==typeof Reflect||!Reflect.construct)return!1;if(Reflect.construct.sham)return!1;if("function"==typeof Proxy)return!0;try{return Boolean.prototype.valueOf.call(Reflect.construct(Boolean,[],(function(){}))),!0}catch(t){return!1}}()?Reflect.construct.bind():function(t,e,n){var o=[null];o.push.apply(o,e);var r=new(Function.bind.apply(t,o));return n&&i(r,n.prototype),r},o.apply(null,arguments)}function r(t){var e="function"==typeof Map?new Map:void 0;return r=function(t){if(null===t||(r=t,-1===Function.toString.call(r).indexOf("[native code]")))return t;var r;if("function"!=typeof t)throw new TypeError("Super expression must either be null or a function");if(void 0!==e){if(e.has(t))return e.get(t);e.set(t,s)}function s(){return o(t,arguments,n(this).constructor)}return s.prototype=Object.create(t.prototype,{constructor:{value:s,enumerable:!1,writable:!0,configurable:!0}}),i(s,t)},r(t)}function s(t){if(void 0===t)throw new ReferenceError("this hasn't been initialised - super() hasn't been called");return t}var a=function(){for(var t=arguments[0],e=1,n=arguments.length;e<n;e++)if(arguments[e])for(var i in arguments[e])t[i]=arguments[e][i];return t};function l(t,e,n,i){var o=t._nodes.get(e),r=null;return o?r="mixed"===i?o.out&&o.out[n]||o.undirected&&o.undirected[n]:"directed"===i?o.out&&o.out[n]:o.undirected&&o.undirected[n]:r}function c(e){return"object"===t(e)&&null!==e}function h(t){var e;for(e in t)return!1;return!0}function u(t,e,n){Object.defineProperty(t,e,{enumerable:!1,configurable:!1,writable:!0,value:n})}function d(t,e,n){var i={enumerable:!0,configurable:!0};"function"==typeof n?i.get=n:(i.value=n,i.writable=!1),Object.defineProperty(t,e,i)}function p(t){return!(!c(t)||t.attributes&&!Array.isArray(t.attributes))}"function"==typeof Object.assign&&(a=Object.assign);var m,f={exports:{}},g="object"==typeof Reflect?Reflect:null,y=g&&"function"==typeof g.apply?g.apply:function(t,e,n){return Function.prototype.apply.call(t,e,n)};m=g&&"function"==typeof g.ownKeys?g.ownKeys:Object.getOwnPropertySymbols?function(t){return Object.getOwnPropertyNames(t).concat(Object.getOwnPropertySymbols(t))}:function(t){return Object.getOwnPropertyNames(t)};var b=Number.isNaN||function(t){return t!=t};function v(){v.init.call(this)}f.exports=v,f.exports.once=function(t,e){return new Promise((function(n,i){function o(n){t.removeListener(e,r),i(n)}function r(){"function"==typeof t.removeListener&&t.removeListener("error",o),n([].slice.call(arguments))}I(t,e,r,{once:!0}),"error"!==e&&function(t,e){"function"==typeof t.on&&I(t,"error",e,{once:!0})}(t,o)}))},v.EventEmitter=v,v.prototype._events=void 0,v.prototype._eventsCount=0,v.prototype._maxListeners=void 0;var w=10;function C(t){if("function"!=typeof t)throw new TypeError('The "listener" argument must be of type Function. Received type '+typeof t)}function A(t){return void 0===t._maxListeners?v.defaultMaxListeners:t._maxListeners}function S(t,e,n,i){var o,r,s,a;if(C(n),void 0===(r=t._events)?(r=t._events=Object.create(null),t._eventsCount=0):(void 0!==r.newListener&&(t.emit("newListener",e,n.listener?n.listener:n),r=t._events),s=r[e]),void 0===s)s=r[e]=n,++t._eventsCount;else if("function"==typeof s?s=r[e]=i?[n,s]:[s,n]:i?s.unshift(n):s.push(n),(o=A(t))>0&&s.length>o&&!s.warned){s.warned=!0;var l=new Error("Possible EventEmitter memory leak detected. "+s.length+" "+String(e)+" listeners added. Use emitter.setMaxListeners() to increase limit");l.name="MaxListenersExceededWarning",l.emitter=t,l.type=e,l.count=s.length,a=l,console&&console.warn&&console.warn(a)}return t}function x(){if(!this.fired)return this.target.removeListener(this.type,this.wrapFn),this.fired=!0,0===arguments.length?this.listener.call(this.target):this.listener.apply(this.target,arguments)}function E(t,e,n){var i={fired:!1,wrapFn:void 0,target:t,type:e,listener:n},o=x.bind(i);return o.listener=n,i.wrapFn=o,o}function T(t,e,n){var i=t._events;if(void 0===i)return[];var o=i[e];return void 0===o?[]:"function"==typeof o?n?[o.listener||o]:[o]:n?function(t){for(var e=new Array(t.length),n=0;n<e.length;++n)e[n]=t[n].listener||t[n];return e}(o):M(o,o.length)}function _(t){var e=this._events;if(void 0!==e){var n=e[t];if("function"==typeof n)return 1;if(void 0!==n)return n.length}return 0}function M(t,e){for(var n=new Array(e),i=0;i<e;++i)n[i]=t[i];return n}function I(t,e,n,i){if("function"==typeof t.on)i.once?t.once(e,n):t.on(e,n);else{if("function"!=typeof t.addEventListener)throw new TypeError('The "emitter" argument must be of type EventEmitter. Received type '+typeof t);t.addEventListener(e,(function o(r){i.once&&t.removeEventListener(e,o),n(r)}))}}function L(t){if("function"!=typeof t)throw new Error("obliterator/iterator: expecting a function!");this.next=t}Object.defineProperty(v,"defaultMaxListeners",{enumerable:!0,get:function(){return w},set:function(t){if("number"!=typeof t||t<0||b(t))throw new RangeError('The value of "defaultMaxListeners" is out of range. It must be a non-negative number. Received '+t+".");w=t}}),v.init=function(){void 0!==this._events&&this._events!==Object.getPrototypeOf(this)._events||(this._events=Object.create(null),this._eventsCount=0),this._maxListeners=this._maxListeners||void 0},v.prototype.setMaxListeners=function(t){if("number"!=typeof t||t<0||b(t))throw new RangeError('The value of "n" is out of range. It must be a non-negative number. Received '+t+".");return this._maxListeners=t,this},v.prototype.getMaxListeners=function(){return A(this)},v.prototype.emit=function(t){for(var e=[],n=1;n<arguments.length;n++)e.push(arguments[n]);var i="error"===t,o=this._events;if(void 0!==o)i=i&&void 0===o.error;else if(!i)return!1;if(i){var r;if(e.length>0&&(r=e[0]),r instanceof Error)throw r;var s=new Error("Unhandled error."+(r?" ("+r.message+")":""));throw s.context=r,s}var a=o[t];if(void 0===a)return!1;if("function"==typeof a)y(a,this,e);else{var l=a.length,c=M(a,l);for(n=0;n<l;++n)y(c[n],this,e)}return!0},v.prototype.addListener=function(t,e){return S(this,t,e,!1)},v.prototype.on=v.prototype.addListener,v.prototype.prependListener=function(t,e){return S(this,t,e,!0)},v.prototype.once=function(t,e){return C(e),this.on(t,E(this,t,e)),this},v.prototype.prependOnceListener=function(t,e){return C(e),this.prependListener(t,E(this,t,e)),this},v.prototype.removeListener=function(t,e){var n,i,o,r,s;if(C(e),void 0===(i=this._events))return this;if(void 0===(n=i[t]))return this;if(n===e||n.listener===e)0==--this._eventsCount?this._events=Object.create(null):(delete i[t],i.removeListener&&this.emit("removeListener",t,n.listener||e));else if("function"!=typeof n){for(o=-1,r=n.length-1;r>=0;r--)if(n[r]===e||n[r].listener===e){s=n[r].listener,o=r;break}if(o<0)return this;0===o?n.shift():function(t,e){for(;e+1<t.length;e++)t[e]=t[e+1];t.pop()}(n,o),1===n.length&&(i[t]=n[0]),void 0!==i.removeListener&&this.emit("removeListener",t,s||e)}return this},v.prototype.off=v.prototype.removeListener,v.prototype.removeAllListeners=function(t){var e,n,i;if(void 0===(n=this._events))return this;if(void 0===n.removeListener)return 0===arguments.length?(this._events=Object.create(null),this._eventsCount=0):void 0!==n[t]&&(0==--this._eventsCount?this._events=Object.create(null):delete n[t]),this;if(0===arguments.length){var o,r=Object.keys(n);for(i=0;i<r.length;++i)"removeListener"!==(o=r[i])&&this.removeAllListeners(o);return this.removeAllListeners("removeListener"),this._events=Object.create(null),this._eventsCount=0,this}if("function"==typeof(e=n[t]))this.removeListener(t,e);else if(void 0!==e)for(i=e.length-1;i>=0;i--)this.removeListener(t,e[i]);return this},v.prototype.listeners=function(t){return T(this,t,!0)},v.prototype.rawListeners=function(t){return T(this,t,!1)},v.listenerCount=function(t,e){return"function"==typeof t.listenerCount?t.listenerCount(e):_.call(t,e)},v.prototype.listenerCount=_,v.prototype.eventNames=function(){return this._eventsCount>0?m(this._events):[]},"undefined"!=typeof Symbol&&(L.prototype[Symbol.iterator]=function(){return this}),L.of=function(){var t=arguments,e=t.length,n=0;return new L((function(){return n>=e?{done:!0}:{done:!1,value:t[n++]}}))},L.empty=function(){return new L((function(){return{done:!0}}))},L.fromSequence=function(t){var e=0,n=t.length;return new L((function(){return e>=n?{done:!0}:{done:!1,value:t[e++]}}))},L.is=function(t){return t instanceof L||"object"==typeof t&&null!==t&&"function"==typeof t.next};var N=L,P={};P.ARRAY_BUFFER_SUPPORT="undefined"!=typeof ArrayBuffer,P.SYMBOL_SUPPORT="undefined"!=typeof Symbol;var $=N,R=P,k=R.ARRAY_BUFFER_SUPPORT,O=R.SYMBOL_SUPPORT,H=function(t){var e=function(t){return"string"==typeof t||Array.isArray(t)||k&&ArrayBuffer.isView(t)?$.fromSequence(t):"object"!=typeof t||null===t?null:O&&"function"==typeof t[Symbol.iterator]?t[Symbol.iterator]():"function"==typeof t.next?t:null}(t);if(!e)throw new Error("obliterator: target is not iterable nor a valid iterator.");return e},G=H,F=function(t,e){for(var n,i=arguments.length>1?e:1/0,o=i!==1/0?new Array(i):[],r=0,s=G(t);;){if(r===i)return o;if((n=s.next()).done)return r!==e&&(o.length=r),o;o[r++]=n.value}},D=function(t){function n(e){var n;return(n=t.call(this)||this).name="GraphError",n.message=e,n}return e(n,t),n}(r(Error)),B=function(t){function n(e){var i;return(i=t.call(this,e)||this).name="InvalidArgumentsGraphError","function"==typeof Error.captureStackTrace&&Error.captureStackTrace(s(i),n.prototype.constructor),i}return e(n,t),n}(D),V=function(t){function n(e){var i;return(i=t.call(this,e)||this).name="NotFoundGraphError","function"==typeof Error.captureStackTrace&&Error.captureStackTrace(s(i),n.prototype.constructor),i}return e(n,t),n}(D),W=function(t){function n(e){var i;return(i=t.call(this,e)||this).name="UsageGraphError","function"==typeof Error.captureStackTrace&&Error.captureStackTrace(s(i),n.prototype.constructor),i}return e(n,t),n}(D);function U(t,e){this.key=t,this.attributes=e,this.clear()}function j(t,e){this.key=t,this.attributes=e,this.clear()}function q(t,e){this.key=t,this.attributes=e,this.clear()}function z(t,e,n,i,o){this.key=e,this.attributes=o,this.undirected=t,this.source=n,this.target=i}function Y(t,e,n,i,o,r,s){var a,l,c,h;if(i=""+i,0===n){if(!(a=t._nodes.get(i)))throw new V("Graph.".concat(e,': could not find the "').concat(i,'" node in the graph.'));c=o,h=r}else if(3===n){if(o=""+o,!(l=t._edges.get(o)))throw new V("Graph.".concat(e,': could not find the "').concat(o,'" edge in the graph.'));var u=l.source.key,d=l.target.key;if(i===u)a=l.target;else{if(i!==d)throw new V("Graph.".concat(e,': the "').concat(i,'" node is not attached to the "').concat(o,'" edge (').concat(u,", ").concat(d,")."));a=l.source}c=r,h=s}else{if(!(l=t._edges.get(i)))throw new V("Graph.".concat(e,': could not find the "').concat(i,'" edge in the graph.'));a=1===n?l.source:l.target,c=o,h=r}return[a,c,h]}U.prototype.clear=function(){this.inDegree=0,this.outDegree=0,this.undirectedDegree=0,this.undirectedLoops=0,this.directedLoops=0,this.in={},this.out={},this.undirected={}},j.prototype.clear=function(){this.inDegree=0,this.outDegree=0,this.directedLoops=0,this.in={},this.out={}},q.prototype.clear=function(){this.undirectedDegree=0,this.undirectedLoops=0,this.undirected={}},z.prototype.attach=function(){var t="out",e="in";this.undirected&&(t=e="undirected");var n=this.source.key,i=this.target.key;this.source[t][i]=this,this.undirected&&n===i||(this.target[e][n]=this)},z.prototype.attachMulti=function(){var t="out",e="in",n=this.source.key,i=this.target.key;this.undirected&&(t=e="undirected");var o=this.source[t],r=o[i];if(void 0===r)return o[i]=this,void(this.undirected&&n===i||(this.target[e][n]=this));r.previous=this,this.next=r,o[i]=this,this.target[e][n]=this},z.prototype.detach=function(){var t=this.source.key,e=this.target.key,n="out",i="in";this.undirected&&(n=i="undirected"),delete this.source[n][e],delete this.target[i][t]},z.prototype.detachMulti=function(){var t=this.source.key,e=this.target.key,n="out",i="in";this.undirected&&(n=i="undirected"),void 0===this.previous?void 0===this.next?(delete this.source[n][e],delete this.target[i][t]):(this.next.previous=void 0,this.source[n][e]=this.next,this.target[i][t]=this.next):(this.previous.next=this.next,void 0!==this.next&&(this.next.previous=this.previous))};var K=[{name:function(t){return"get".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o){var r=Y(this,e,n,t,i,o),s=r[0],a=r[1];return s.attributes[a]}}},{name:function(t){return"get".concat(t,"Attributes")},attacher:function(t,e,n){t.prototype[e]=function(t,i){return Y(this,e,n,t,i)[0].attributes}}},{name:function(t){return"has".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o){var r=Y(this,e,n,t,i,o),s=r[0],a=r[1];return s.attributes.hasOwnProperty(a)}}},{name:function(t){return"set".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o,r){var s=Y(this,e,n,t,i,o,r),a=s[0],l=s[1],c=s[2];return a.attributes[l]=c,this.emit("nodeAttributesUpdated",{key:a.key,type:"set",attributes:a.attributes,name:l}),this}}},{name:function(t){return"update".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o,r){var s=Y(this,e,n,t,i,o,r),a=s[0],l=s[1],c=s[2];if("function"!=typeof c)throw new B("Graph.".concat(e,": updater should be a function."));var h=a.attributes,u=c(h[l]);return h[l]=u,this.emit("nodeAttributesUpdated",{key:a.key,type:"set",attributes:a.attributes,name:l}),this}}},{name:function(t){return"remove".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o){var r=Y(this,e,n,t,i,o),s=r[0],a=r[1];return delete s.attributes[a],this.emit("nodeAttributesUpdated",{key:s.key,type:"remove",attributes:s.attributes,name:a}),this}}},{name:function(t){return"replace".concat(t,"Attributes")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o){var r=Y(this,e,n,t,i,o),s=r[0],a=r[1];if(!c(a))throw new B("Graph.".concat(e,": provided attributes are not a plain object."));return s.attributes=a,this.emit("nodeAttributesUpdated",{key:s.key,type:"replace",attributes:s.attributes}),this}}},{name:function(t){return"merge".concat(t,"Attributes")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o){var r=Y(this,e,n,t,i,o),s=r[0],l=r[1];if(!c(l))throw new B("Graph.".concat(e,": provided attributes are not a plain object."));return a(s.attributes,l),this.emit("nodeAttributesUpdated",{key:s.key,type:"merge",attributes:s.attributes,data:l}),this}}},{name:function(t){return"update".concat(t,"Attributes")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o){var r=Y(this,e,n,t,i,o),s=r[0],a=r[1];if("function"!=typeof a)throw new B("Graph.".concat(e,": provided updater is not a function."));return s.attributes=a(s.attributes),this.emit("nodeAttributesUpdated",{key:s.key,type:"update",attributes:s.attributes}),this}}}],Z=[{name:function(t){return"get".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i){var o;if("mixed"!==this.type&&"mixed"!==n&&n!==this.type)throw new W("Graph.".concat(e,": cannot find this type of edges in your ").concat(this.type," graph."));if(arguments.length>2){if(this.multi)throw new W("Graph.".concat(e,": cannot use a {source,target} combo when asking about an edge's attributes in a MultiGraph since we cannot infer the one you want information about."));var r=""+t,s=""+i;if(i=arguments[2],!(o=l(this,r,s,n)))throw new V("Graph.".concat(e,': could not find an edge for the given path ("').concat(r,'" - "').concat(s,'").'))}else{if("mixed"!==n)throw new W("Graph.".concat(e,": calling this method with only a key (vs. a source and target) does not make sense since an edge with this key could have the other type."));if(t=""+t,!(o=this._edges.get(t)))throw new V("Graph.".concat(e,': could not find the "').concat(t,'" edge in the graph.'))}return o.attributes[i]}}},{name:function(t){return"get".concat(t,"Attributes")},attacher:function(t,e,n){t.prototype[e]=function(t){var i;if("mixed"!==this.type&&"mixed"!==n&&n!==this.type)throw new W("Graph.".concat(e,": cannot find this type of edges in your ").concat(this.type," graph."));if(arguments.length>1){if(this.multi)throw new W("Graph.".concat(e,": cannot use a {source,target} combo when asking about an edge's attributes in a MultiGraph since we cannot infer the one you want information about."));var o=""+t,r=""+arguments[1];if(!(i=l(this,o,r,n)))throw new V("Graph.".concat(e,': could not find an edge for the given path ("').concat(o,'" - "').concat(r,'").'))}else{if("mixed"!==n)throw new W("Graph.".concat(e,": calling this method with only a key (vs. a source and target) does not make sense since an edge with this key could have the other type."));if(t=""+t,!(i=this._edges.get(t)))throw new V("Graph.".concat(e,': could not find the "').concat(t,'" edge in the graph.'))}return i.attributes}}},{name:function(t){return"has".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i){var o;if("mixed"!==this.type&&"mixed"!==n&&n!==this.type)throw new W("Graph.".concat(e,": cannot find this type of edges in your ").concat(this.type," graph."));if(arguments.length>2){if(this.multi)throw new W("Graph.".concat(e,": cannot use a {source,target} combo when asking about an edge's attributes in a MultiGraph since we cannot infer the one you want information about."));var r=""+t,s=""+i;if(i=arguments[2],!(o=l(this,r,s,n)))throw new V("Graph.".concat(e,': could not find an edge for the given path ("').concat(r,'" - "').concat(s,'").'))}else{if("mixed"!==n)throw new W("Graph.".concat(e,": calling this method with only a key (vs. a source and target) does not make sense since an edge with this key could have the other type."));if(t=""+t,!(o=this._edges.get(t)))throw new V("Graph.".concat(e,': could not find the "').concat(t,'" edge in the graph.'))}return o.attributes.hasOwnProperty(i)}}},{name:function(t){return"set".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o){var r;if("mixed"!==this.type&&"mixed"!==n&&n!==this.type)throw new W("Graph.".concat(e,": cannot find this type of edges in your ").concat(this.type," graph."));if(arguments.length>3){if(this.multi)throw new W("Graph.".concat(e,": cannot use a {source,target} combo when asking about an edge's attributes in a MultiGraph since we cannot infer the one you want information about."));var s=""+t,a=""+i;if(i=arguments[2],o=arguments[3],!(r=l(this,s,a,n)))throw new V("Graph.".concat(e,': could not find an edge for the given path ("').concat(s,'" - "').concat(a,'").'))}else{if("mixed"!==n)throw new W("Graph.".concat(e,": calling this method with only a key (vs. a source and target) does not make sense since an edge with this key could have the other type."));if(t=""+t,!(r=this._edges.get(t)))throw new V("Graph.".concat(e,': could not find the "').concat(t,'" edge in the graph.'))}return r.attributes[i]=o,this.emit("edgeAttributesUpdated",{key:r.key,type:"set",attributes:r.attributes,name:i}),this}}},{name:function(t){return"update".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i,o){var r;if("mixed"!==this.type&&"mixed"!==n&&n!==this.type)throw new W("Graph.".concat(e,": cannot find this type of edges in your ").concat(this.type," graph."));if(arguments.length>3){if(this.multi)throw new W("Graph.".concat(e,": cannot use a {source,target} combo when asking about an edge's attributes in a MultiGraph since we cannot infer the one you want information about."));var s=""+t,a=""+i;if(i=arguments[2],o=arguments[3],!(r=l(this,s,a,n)))throw new V("Graph.".concat(e,': could not find an edge for the given path ("').concat(s,'" - "').concat(a,'").'))}else{if("mixed"!==n)throw new W("Graph.".concat(e,": calling this method with only a key (vs. a source and target) does not make sense since an edge with this key could have the other type."));if(t=""+t,!(r=this._edges.get(t)))throw new V("Graph.".concat(e,': could not find the "').concat(t,'" edge in the graph.'))}if("function"!=typeof o)throw new B("Graph.".concat(e,": updater should be a function."));return r.attributes[i]=o(r.attributes[i]),this.emit("edgeAttributesUpdated",{key:r.key,type:"set",attributes:r.attributes,name:i}),this}}},{name:function(t){return"remove".concat(t,"Attribute")},attacher:function(t,e,n){t.prototype[e]=function(t,i){var o;if("mixed"!==this.type&&"mixed"!==n&&n!==this.type)throw new W("Graph.".concat(e,": cannot find this type of edges in your ").concat(this.type," graph."));if(arguments.length>2){if(this.multi)throw new W("Graph.".concat(e,": cannot use a {source,target} combo when asking about an edge's attributes in a MultiGraph since we cannot infer the one you want information about."));var r=""+t,s=""+i;if(i=arguments[2],!(o=l(this,r,s,n)))throw new V("Graph.".concat(e,': could not find an edge for the given path ("').concat(r,'" - "').concat(s,'").'))}else{if("mixed"!==n)throw new W("Graph.".concat(e,": calling this method with only a key (vs. a source and target) does not make sense since an edge with this key could have the other type."));if(t=""+t,!(o=this._edges.get(t)))throw new V("Graph.".concat(e,': could not find the "').concat(t,'" edge in the graph.'))}return delete o.attributes[i],this.emit("edgeAttributesUpdated",{key:o.key,type:"remove",attributes:o.attributes,name:i}),this}}},{name:function(t){return"replace".concat(t,"Attributes")},attacher:function(t,e,n){t.prototype[e]=function(t,i){var o;if("mixed"!==this.type&&"mixed"!==n&&n!==this.type)throw new W("Graph.".concat(e,": cannot find this type of edges in your ").concat(this.type," graph."));if(arguments.length>2){if(this.multi)throw new W("Graph.".concat(e,": cannot use a {source,target} combo when asking about an edge's attributes in a MultiGraph since we cannot infer the one you want information about."));var r=""+t,s=""+i;if(i=arguments[2],!(o=l(this,r,s,n)))throw new V("Graph.".concat(e,': could not find an edge for the given path ("').concat(r,'" - "').concat(s,'").'))}else{if("mixed"!==n)throw new W("Graph.".concat(e,": calling this method with only a key (vs. a source and target) does not make sense since an edge with this key could have the other type."));if(t=""+t,!(o=this._edges.get(t)))throw new V("Graph.".concat(e,': could not find the "').concat(t,'" edge in the graph.'))}if(!c(i))throw new B("Graph.".concat(e,": provided attributes are not a plain object."));return o.attributes=i,this.emit("edgeAttributesUpdated",{key:o.key,type:"replace",attributes:o.attributes}),this}}},{name:function(t){return"merge".concat(t,"Attributes")},attacher:function(t,e,n){t.prototype[e]=function(t,i){var o;if("mixed"!==this.type&&"mixed"!==n&&n!==this.type)throw new W("Graph.".concat(e,": cannot find this type of edges in your ").concat(this.type," graph."));if(arguments.length>2){if(this.multi)throw new W("Graph.".concat(e,": cannot use a {source,target} combo when asking about an edge's attributes in a MultiGraph since we cannot infer the one you want information about."));var r=""+t,s=""+i;if(i=arguments[2],!(o=l(this,r,s,n)))throw new V("Graph.".concat(e,': could not find an edge for the given path ("').concat(r,'" - "').concat(s,'").'))}else{if("mixed"!==n)throw new W("Graph.".concat(e,": calling this method with only a key (vs. a source and target) does not make sense since an edge with this key could have the other type."));if(t=""+t,!(o=this._edges.get(t)))throw new V("Graph.".concat(e,': could not find the "').concat(t,'" edge in the graph.'))}if(!c(i))throw new B("Graph.".concat(e,": provided attributes are not a plain object."));return a(o.attributes,i),this.emit("edgeAttributesUpdated",{key:o.key,type:"merge",attributes:o.attributes,data:i}),this}}},{name:function(t){return"update".concat(t,"Attributes")},attacher:function(t,e,n){t.prototype[e]=function(t,i){var o;if("mixed"!==this.type&&"mixed"!==n&&n!==this.type)throw new W("Graph.".concat(e,": cannot find this type of edges in your ").concat(this.type," graph."));if(arguments.length>2){if(this.multi)throw new W("Graph.".concat(e,": cannot use a {source,target} combo when asking about an edge's attributes in a MultiGraph since we cannot infer the one you want information about."));var r=""+t,s=""+i;if(i=arguments[2],!(o=l(this,r,s,n)))throw new V("Graph.".concat(e,': could not find an edge for the given path ("').concat(r,'" - "').concat(s,'").'))}else{if("mixed"!==n)throw new W("Graph.".concat(e,": calling this method with only a key (vs. a source and target) does not make sense since an edge with this key could have the other type."));if(t=""+t,!(o=this._edges.get(t)))throw new V("Graph.".concat(e,': could not find the "').concat(t,'" edge in the graph.'))}if("function"!=typeof i)throw new B("Graph.".concat(e,": provided updater is not a function."));return o.attributes=i(o.attributes),this.emit("edgeAttributesUpdated",{key:o.key,type:"update",attributes:o.attributes}),this}}}],X=N,J=H,Q=function(){var t=arguments,e=null,n=-1;return new X((function(){for(var i=null;;){if(null===e){if(++n>=t.length)return{done:!0};e=J(t[n])}if(!0!==(i=e.next()).done)break;e=null}return i}))},tt=[{name:"edges",type:"mixed"},{name:"inEdges",type:"directed",direction:"in"},{name:"outEdges",type:"directed",direction:"out"},{name:"inboundEdges",type:"mixed",direction:"in"},{name:"outboundEdges",type:"mixed",direction:"out"},{name:"directedEdges",type:"directed"},{name:"undirectedEdges",type:"undirected"}];function et(t,e,n,i){var o=!1;for(var r in e)if(r!==i){var s=e[r];if(o=n(s.key,s.attributes,s.source.key,s.target.key,s.source.attributes,s.target.attributes,s.undirected),t&&o)return s.key}}function nt(t,e,n,i){var o,r,s,a=!1;for(var l in e)if(l!==i){o=e[l];do{if(r=o.source,s=o.target,a=n(o.key,o.attributes,r.key,s.key,r.attributes,s.attributes,o.undirected),t&&a)return o.key;o=o.next}while(void 0!==o)}}function it(t,e){var n,i=Object.keys(t),o=i.length,r=0;return new N((function(){do{if(n)n=n.next;else{if(r>=o)return{done:!0};var s=i[r++];if(s===e){n=void 0;continue}n=t[s]}}while(!n);return{done:!1,value:{edge:n.key,attributes:n.attributes,source:n.source.key,target:n.target.key,sourceAttributes:n.source.attributes,targetAttributes:n.target.attributes,undirected:n.undirected}}}))}function ot(t,e,n,i){var o=e[n];if(o){var r=o.source,s=o.target;return i(o.key,o.attributes,r.key,s.key,r.attributes,s.attributes,o.undirected)&&t?o.key:void 0}}function rt(t,e,n,i){var o=e[n];if(o){var r=!1;do{if(r=i(o.key,o.attributes,o.source.key,o.target.key,o.source.attributes,o.target.attributes,o.undirected),t&&r)return o.key;o=o.next}while(void 0!==o)}}function st(t,e){var n=t[e];return void 0!==n.next?new N((function(){if(!n)return{done:!0};var t={edge:n.key,attributes:n.attributes,source:n.source.key,target:n.target.key,sourceAttributes:n.source.attributes,targetAttributes:n.target.attributes,undirected:n.undirected};return n=n.next,{done:!1,value:t}})):N.of({edge:n.key,attributes:n.attributes,source:n.source.key,target:n.target.key,sourceAttributes:n.source.attributes,targetAttributes:n.target.attributes,undirected:n.undirected})}function at(t,e,n,i){if(0!==e.size)for(var o,r,s="mixed"!==n&&n!==e.type,a="undirected"===n,l=!1,c=e._edges.values();!0!==(o=c.next()).done;)if(r=o.value,!s||r.undirected===a){var h=r,u=h.key,d=h.attributes,p=h.source,m=h.target;if(l=i(u,d,p.key,m.key,p.attributes,m.attributes,r.undirected),t&&l)return u}}function lt(t,e,n,i,o,r){var s,a=e?nt:et;if("undirected"!==n){if("out"!==i&&(s=a(t,o.in,r),t&&s))return s;if("in"!==i&&(s=a(t,o.out,r,i?void 0:o.key),t&&s))return s}if("directed"!==n&&(s=a(t,o.undirected,r),t&&s))return s}function ct(t,e,n,i,o,r,s){var a,l=n?rt:ot;if("undirected"!==e){if(void 0!==o.in&&"out"!==i&&(a=l(t,o.in,r,s),t&&a))return a;if(void 0!==o.out&&"in"!==i&&(i||o.key!==r)&&(a=l(t,o.out,r,s),t&&a))return a}if("directed"!==e&&void 0!==o.undirected&&(a=l(t,o.undirected,r,s),t&&a))return a}var ht=[{name:"neighbors",type:"mixed"},{name:"inNeighbors",type:"directed",direction:"in"},{name:"outNeighbors",type:"directed",direction:"out"},{name:"inboundNeighbors",type:"mixed",direction:"in"},{name:"outboundNeighbors",type:"mixed",direction:"out"},{name:"directedNeighbors",type:"directed"},{name:"undirectedNeighbors",type:"undirected"}];function ut(){this.A=null,this.B=null}function dt(t,e,n,i,o){for(var r in i){var s=i[r],a=s.source,l=s.target,c=a===n?l:a;if(!e||!e.has(c.key)){var h=o(c.key,c.attributes);if(t&&h)return c.key}}}function pt(t,e,n,i,o){if("mixed"!==e){if("undirected"===e)return dt(t,null,i,i.undirected,o);if("string"==typeof n)return dt(t,null,i,i[n],o)}var r,s=new ut;if("undirected"!==e){if("out"!==n){if(r=dt(t,null,i,i.in,o),t&&r)return r;s.wrap(i.in)}if("in"!==n){if(r=dt(t,s,i,i.out,o),t&&r)return r;s.wrap(i.out)}}if("directed"!==e&&(r=dt(t,s,i,i.undirected,o),t&&r))return r}function mt(t,e,n){var i=Object.keys(n),o=i.length,r=0;return new N((function(){var s=null;do{if(r>=o)return t&&t.wrap(n),{done:!0};var a=n[i[r++]],l=a.source,c=a.target;s=l===e?c:l,t&&t.has(s.key)&&(s=null)}while(null===s);return{done:!1,value:{neighbor:s.key,attributes:s.attributes}}}))}function ft(t,e,n,i,o){for(var r,s,a,l,c,h,u,d=i._nodes.values(),p=i.type;!0!==(r=d.next()).done;){var m=!1;if(s=r.value,"undirected"!==p)for(a in l=s.out){c=l[a];do{if(h=c.target,m=!0,u=o(s.key,h.key,s.attributes,h.attributes,c.key,c.attributes,c.undirected),t&&u)return c;c=c.next}while(c)}if("directed"!==p)for(a in l=s.undirected)if(!(e&&s.key>a)){c=l[a];do{if((h=c.target).key!==a&&(h=c.source),m=!0,u=o(s.key,h.key,s.attributes,h.attributes,c.key,c.attributes,c.undirected),t&&u)return c;c=c.next}while(c)}if(n&&!m&&(u=o(s.key,null,s.attributes,null,null,null,null),t&&u))return null}}function gt(t){if(!c(t))throw new B('Graph.import: invalid serialized node. A serialized node should be a plain object with at least a "key" property.');if(!("key"in t))throw new B("Graph.import: serialized node is missing its key.");if("attributes"in t&&(!c(t.attributes)||null===t.attributes))throw new B("Graph.import: invalid attributes. Attributes should be a plain object, null or omitted.")}function yt(t){if(!c(t))throw new B('Graph.import: invalid serialized edge. A serialized edge should be a plain object with at least a "source" & "target" property.');if(!("source"in t))throw new B("Graph.import: serialized edge is missing its source.");if(!("target"in t))throw new B("Graph.import: serialized edge is missing its target.");if("attributes"in t&&(!c(t.attributes)||null===t.attributes))throw new B("Graph.import: invalid attributes. Attributes should be a plain object, null or omitted.");if("undirected"in t&&"boolean"!=typeof t.undirected)throw new B("Graph.import: invalid undirectedness information. Undirected should be boolean or omitted.")}ut.prototype.wrap=function(t){null===this.A?this.A=t:null===this.B&&(this.B=t)},ut.prototype.has=function(t){return null!==this.A&&t in this.A||null!==this.B&&t in this.B};var bt,vt=(bt=255&Math.floor(256*Math.random()),function(){return bt++}),wt=new Set(["directed","undirected","mixed"]),Ct=new Set(["domain","_events","_eventsCount","_maxListeners"]),At={allowSelfLoops:!0,multi:!1,type:"mixed"};function St(t,e,n){var i=new t.NodeDataClass(e,n);return t._nodes.set(e,i),t.emit("nodeAdded",{key:e,attributes:n}),i}function xt(t,e,n,i,o,r,s,a){if(!i&&"undirected"===t.type)throw new W("Graph.".concat(e,": you cannot add a directed edge to an undirected graph. Use the #.addEdge or #.addUndirectedEdge instead."));if(i&&"directed"===t.type)throw new W("Graph.".concat(e,": you cannot add an undirected edge to a directed graph. Use the #.addEdge or #.addDirectedEdge instead."));if(a&&!c(a))throw new B("Graph.".concat(e,': invalid attributes. Expecting an object but got "').concat(a,'"'));if(r=""+r,s=""+s,a=a||{},!t.allowSelfLoops&&r===s)throw new W("Graph.".concat(e,': source & target are the same ("').concat(r,"\"), thus creating a loop explicitly forbidden by this graph 'allowSelfLoops' option set to false."));var l=t._nodes.get(r),h=t._nodes.get(s);if(!l)throw new V("Graph.".concat(e,': source node "').concat(r,'" not found.'));if(!h)throw new V("Graph.".concat(e,': target node "').concat(s,'" not found.'));var u={key:null,undirected:i,source:r,target:s,attributes:a};if(n)o=t._edgeKeyGenerator();else if(o=""+o,t._edges.has(o))throw new W("Graph.".concat(e,': the "').concat(o,'" edge already exists in the graph.'));if(!t.multi&&(i?void 0!==l.undirected[s]:void 0!==l.out[s]))throw new W("Graph.".concat(e,': an edge linking "').concat(r,'" to "').concat(s,"\" already exists. If you really want to add multiple edges linking those nodes, you should create a multi graph by using the 'multi' option."));var d=new z(i,o,l,h,a);t._edges.set(o,d);var p=r===s;return i?(l.undirectedDegree++,h.undirectedDegree++,p&&(l.undirectedLoops++,t._undirectedSelfLoopCount++)):(l.outDegree++,h.inDegree++,p&&(l.directedLoops++,t._directedSelfLoopCount++)),t.multi?d.attachMulti():d.attach(),i?t._undirectedSize++:t._directedSize++,u.key=o,t.emit("edgeAdded",u),o}function Et(t,e,n,i,o,r,s,l,h){if(!i&&"undirected"===t.type)throw new W("Graph.".concat(e,": you cannot merge/update a directed edge to an undirected graph. Use the #.mergeEdge/#.updateEdge or #.addUndirectedEdge instead."));if(i&&"directed"===t.type)throw new W("Graph.".concat(e,": you cannot merge/update an undirected edge to a directed graph. Use the #.mergeEdge/#.updateEdge or #.addDirectedEdge instead."));if(l)if(h){if("function"!=typeof l)throw new B("Graph.".concat(e,': invalid updater function. Expecting a function but got "').concat(l,'"'))}else if(!c(l))throw new B("Graph.".concat(e,': invalid attributes. Expecting an object but got "').concat(l,'"'));var u;if(r=""+r,s=""+s,h&&(u=l,l=void 0),!t.allowSelfLoops&&r===s)throw new W("Graph.".concat(e,': source & target are the same ("').concat(r,"\"), thus creating a loop explicitly forbidden by this graph 'allowSelfLoops' option set to false."));var d,p,m=t._nodes.get(r),f=t._nodes.get(s);if(!n&&(d=t._edges.get(o))){if(!(d.source.key===r&&d.target.key===s||i&&d.source.key===s&&d.target.key===r))throw new W("Graph.".concat(e,': inconsistency detected when attempting to merge the "').concat(o,'" edge with "').concat(r,'" source & "').concat(s,'" target vs. ("').concat(d.source.key,'", "').concat(d.target.key,'").'));p=d}if(p||t.multi||!m||(p=i?m.undirected[s]:m.out[s]),p){var g=[p.key,!1,!1,!1];if(h?!u:!l)return g;if(h){var y=p.attributes;p.attributes=u(y),t.emit("edgeAttributesUpdated",{type:"replace",key:p.key,attributes:p.attributes})}else a(p.attributes,l),t.emit("edgeAttributesUpdated",{type:"merge",key:p.key,attributes:p.attributes,data:l});return g}l=l||{},h&&u&&(l=u(l));var b={key:null,undirected:i,source:r,target:s,attributes:l};if(n)o=t._edgeKeyGenerator();else if(o=""+o,t._edges.has(o))throw new W("Graph.".concat(e,': the "').concat(o,'" edge already exists in the graph.'));var v=!1,w=!1;m||(m=St(t,r,{}),v=!0,r===s&&(f=m,w=!0)),f||(f=St(t,s,{}),w=!0),d=new z(i,o,m,f,l),t._edges.set(o,d);var C=r===s;return i?(m.undirectedDegree++,f.undirectedDegree++,C&&(m.undirectedLoops++,t._undirectedSelfLoopCount++)):(m.outDegree++,f.inDegree++,C&&(m.directedLoops++,t._directedSelfLoopCount++)),t.multi?d.attachMulti():d.attach(),i?t._undirectedSize++:t._directedSize++,b.key=o,t.emit("edgeAdded",b),[o,!0,v,w]}function Tt(t,e){t._edges.delete(e.key);var n=e.source,i=e.target,o=e.attributes,r=e.undirected,s=n===i;r?(n.undirectedDegree--,i.undirectedDegree--,s&&(n.undirectedLoops--,t._undirectedSelfLoopCount--)):(n.outDegree--,i.inDegree--,s&&(n.directedLoops--,t._directedSelfLoopCount--)),t.multi?e.detachMulti():e.detach(),r?t._undirectedSize--:t._directedSize--,t.emit("edgeDropped",{key:e.key,attributes:o,source:n.key,target:i.key,undirected:r})}var _t=function(n){function i(t){var e;if(e=n.call(this)||this,"boolean"!=typeof(t=a({},At,t)).multi)throw new B("Graph.constructor: invalid 'multi' option. Expecting a boolean but got \"".concat(t.multi,'".'));if(!wt.has(t.type))throw new B('Graph.constructor: invalid \'type\' option. Should be one of "mixed", "directed" or "undirected" but got "'.concat(t.type,'".'));if("boolean"!=typeof t.allowSelfLoops)throw new B("Graph.constructor: invalid 'allowSelfLoops' option. Expecting a boolean but got \"".concat(t.allowSelfLoops,'".'));var i="mixed"===t.type?U:"directed"===t.type?j:q;u(s(e),"NodeDataClass",i);var o="geid_"+vt()+"_",r=0;return u(s(e),"_attributes",{}),u(s(e),"_nodes",new Map),u(s(e),"_edges",new Map),u(s(e),"_directedSize",0),u(s(e),"_undirectedSize",0),u(s(e),"_directedSelfLoopCount",0),u(s(e),"_undirectedSelfLoopCount",0),u(s(e),"_edgeKeyGenerator",(function(){var t;do{t=o+r++}while(e._edges.has(t));return t})),u(s(e),"_options",t),Ct.forEach((function(t){return u(s(e),t,e[t])})),d(s(e),"order",(function(){return e._nodes.size})),d(s(e),"size",(function(){return e._edges.size})),d(s(e),"directedSize",(function(){return e._directedSize})),d(s(e),"undirectedSize",(function(){return e._undirectedSize})),d(s(e),"selfLoopCount",(function(){return e._directedSelfLoopCount+e._undirectedSelfLoopCount})),d(s(e),"directedSelfLoopCount",(function(){return e._directedSelfLoopCount})),d(s(e),"undirectedSelfLoopCount",(function(){return e._undirectedSelfLoopCount})),d(s(e),"multi",e._options.multi),d(s(e),"type",e._options.type),d(s(e),"allowSelfLoops",e._options.allowSelfLoops),d(s(e),"implementation",(function(){return"graphology"})),e}e(i,n);var o=i.prototype;return o._resetInstanceCounters=function(){this._directedSize=0,this._undirectedSize=0,this._directedSelfLoopCount=0,this._undirectedSelfLoopCount=0},o.hasNode=function(t){return this._nodes.has(""+t)},o.hasDirectedEdge=function(t,e){if("undirected"===this.type)return!1;if(1===arguments.length){var n=""+t,i=this._edges.get(n);return!!i&&!i.undirected}if(2===arguments.length){t=""+t,e=""+e;var o=this._nodes.get(t);return!!o&&o.out.hasOwnProperty(e)}throw new B("Graph.hasDirectedEdge: invalid arity (".concat(arguments.length,", instead of 1 or 2). You can either ask for an edge id or for the existence of an edge between a source & a target."))},o.hasUndirectedEdge=function(t,e){if("directed"===this.type)return!1;if(1===arguments.length){var n=""+t,i=this._edges.get(n);return!!i&&i.undirected}if(2===arguments.length){t=""+t,e=""+e;var o=this._nodes.get(t);return!!o&&o.undirected.hasOwnProperty(e)}throw new B("Graph.hasDirectedEdge: invalid arity (".concat(arguments.length,", instead of 1 or 2). You can either ask for an edge id or for the existence of an edge between a source & a target."))},o.hasEdge=function(t,e){if(1===arguments.length){var n=""+t;return this._edges.has(n)}if(2===arguments.length){t=""+t,e=""+e;var i=this._nodes.get(t);return!!i&&(void 0!==i.out&&i.out.hasOwnProperty(e)||void 0!==i.undirected&&i.undirected.hasOwnProperty(e))}throw new B("Graph.hasEdge: invalid arity (".concat(arguments.length,", instead of 1 or 2). You can either ask for an edge id or for the existence of an edge between a source & a target."))},o.directedEdge=function(t,e){if("undirected"!==this.type){if(t=""+t,e=""+e,this.multi)throw new W("Graph.directedEdge: this method is irrelevant with multigraphs since there might be multiple edges between source & target. See #.directedEdges instead.");var n=this._nodes.get(t);if(!n)throw new V('Graph.directedEdge: could not find the "'.concat(t,'" source node in the graph.'));if(!this._nodes.has(e))throw new V('Graph.directedEdge: could not find the "'.concat(e,'" target node in the graph.'));var i=n.out&&n.out[e]||void 0;return i?i.key:void 0}},o.undirectedEdge=function(t,e){if("directed"!==this.type){if(t=""+t,e=""+e,this.multi)throw new W("Graph.undirectedEdge: this method is irrelevant with multigraphs since there might be multiple edges between source & target. See #.undirectedEdges instead.");var n=this._nodes.get(t);if(!n)throw new V('Graph.undirectedEdge: could not find the "'.concat(t,'" source node in the graph.'));if(!this._nodes.has(e))throw new V('Graph.undirectedEdge: could not find the "'.concat(e,'" target node in the graph.'));var i=n.undirected&&n.undirected[e]||void 0;return i?i.key:void 0}},o.edge=function(t,e){if(this.multi)throw new W("Graph.edge: this method is irrelevant with multigraphs since there might be multiple edges between source & target. See #.edges instead.");t=""+t,e=""+e;var n=this._nodes.get(t);if(!n)throw new V('Graph.edge: could not find the "'.concat(t,'" source node in the graph.'));if(!this._nodes.has(e))throw new V('Graph.edge: could not find the "'.concat(e,'" target node in the graph.'));var i=n.out&&n.out[e]||n.undirected&&n.undirected[e]||void 0;if(i)return i.key},o.areDirectedNeighbors=function(t,e){t=""+t,e=""+e;var n=this._nodes.get(t);if(!n)throw new V('Graph.areDirectedNeighbors: could not find the "'.concat(t,'" node in the graph.'));return"undirected"!==this.type&&(e in n.in||e in n.out)},o.areOutNeighbors=function(t,e){t=""+t,e=""+e;var n=this._nodes.get(t);if(!n)throw new V('Graph.areOutNeighbors: could not find the "'.concat(t,'" node in the graph.'));return"undirected"!==this.type&&e in n.out},o.areInNeighbors=function(t,e){t=""+t,e=""+e;var n=this._nodes.get(t);if(!n)throw new V('Graph.areInNeighbors: could not find the "'.concat(t,'" node in the graph.'));return"undirected"!==this.type&&e in n.in},o.areUndirectedNeighbors=function(t,e){t=""+t,e=""+e;var n=this._nodes.get(t);if(!n)throw new V('Graph.areUndirectedNeighbors: could not find the "'.concat(t,'" node in the graph.'));return"directed"!==this.type&&e in n.undirected},o.areNeighbors=function(t,e){t=""+t,e=""+e;var n=this._nodes.get(t);if(!n)throw new V('Graph.areNeighbors: could not find the "'.concat(t,'" node in the graph.'));return"undirected"!==this.type&&(e in n.in||e in n.out)||"directed"!==this.type&&e in n.undirected},o.areInboundNeighbors=function(t,e){t=""+t,e=""+e;var n=this._nodes.get(t);if(!n)throw new V('Graph.areInboundNeighbors: could not find the "'.concat(t,'" node in the graph.'));return"undirected"!==this.type&&e in n.in||"directed"!==this.type&&e in n.undirected},o.areOutboundNeighbors=function(t,e){t=""+t,e=""+e;var n=this._nodes.get(t);if(!n)throw new V('Graph.areOutboundNeighbors: could not find the "'.concat(t,'" node in the graph.'));return"undirected"!==this.type&&e in n.out||"directed"!==this.type&&e in n.undirected},o.inDegree=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.inDegree: could not find the "'.concat(t,'" node in the graph.'));return"undirected"===this.type?0:e.inDegree},o.outDegree=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.outDegree: could not find the "'.concat(t,'" node in the graph.'));return"undirected"===this.type?0:e.outDegree},o.directedDegree=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.directedDegree: could not find the "'.concat(t,'" node in the graph.'));return"undirected"===this.type?0:e.inDegree+e.outDegree},o.undirectedDegree=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.undirectedDegree: could not find the "'.concat(t,'" node in the graph.'));return"directed"===this.type?0:e.undirectedDegree},o.inboundDegree=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.inboundDegree: could not find the "'.concat(t,'" node in the graph.'));var n=0;return"directed"!==this.type&&(n+=e.undirectedDegree),"undirected"!==this.type&&(n+=e.inDegree),n},o.outboundDegree=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.outboundDegree: could not find the "'.concat(t,'" node in the graph.'));var n=0;return"directed"!==this.type&&(n+=e.undirectedDegree),"undirected"!==this.type&&(n+=e.outDegree),n},o.degree=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.degree: could not find the "'.concat(t,'" node in the graph.'));var n=0;return"directed"!==this.type&&(n+=e.undirectedDegree),"undirected"!==this.type&&(n+=e.inDegree+e.outDegree),n},o.inDegreeWithoutSelfLoops=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.inDegreeWithoutSelfLoops: could not find the "'.concat(t,'" node in the graph.'));return"undirected"===this.type?0:e.inDegree-e.directedLoops},o.outDegreeWithoutSelfLoops=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.outDegreeWithoutSelfLoops: could not find the "'.concat(t,'" node in the graph.'));return"undirected"===this.type?0:e.outDegree-e.directedLoops},o.directedDegreeWithoutSelfLoops=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.directedDegreeWithoutSelfLoops: could not find the "'.concat(t,'" node in the graph.'));return"undirected"===this.type?0:e.inDegree+e.outDegree-2*e.directedLoops},o.undirectedDegreeWithoutSelfLoops=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.undirectedDegreeWithoutSelfLoops: could not find the "'.concat(t,'" node in the graph.'));return"directed"===this.type?0:e.undirectedDegree-2*e.undirectedLoops},o.inboundDegreeWithoutSelfLoops=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.inboundDegreeWithoutSelfLoops: could not find the "'.concat(t,'" node in the graph.'));var n=0,i=0;return"directed"!==this.type&&(n+=e.undirectedDegree,i+=2*e.undirectedLoops),"undirected"!==this.type&&(n+=e.inDegree,i+=e.directedLoops),n-i},o.outboundDegreeWithoutSelfLoops=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.outboundDegreeWithoutSelfLoops: could not find the "'.concat(t,'" node in the graph.'));var n=0,i=0;return"directed"!==this.type&&(n+=e.undirectedDegree,i+=2*e.undirectedLoops),"undirected"!==this.type&&(n+=e.outDegree,i+=e.directedLoops),n-i},o.degreeWithoutSelfLoops=function(t){t=""+t;var e=this._nodes.get(t);if(!e)throw new V('Graph.degreeWithoutSelfLoops: could not find the "'.concat(t,'" node in the graph.'));var n=0,i=0;return"directed"!==this.type&&(n+=e.undirectedDegree,i+=2*e.undirectedLoops),"undirected"!==this.type&&(n+=e.inDegree+e.outDegree,i+=2*e.directedLoops),n-i},o.source=function(t){t=""+t;var e=this._edges.get(t);if(!e)throw new V('Graph.source: could not find the "'.concat(t,'" edge in the graph.'));return e.source.key},o.target=function(t){t=""+t;var e=this._edges.get(t);if(!e)throw new V('Graph.target: could not find the "'.concat(t,'" edge in the graph.'));return e.target.key},o.extremities=function(t){t=""+t;var e=this._edges.get(t);if(!e)throw new V('Graph.extremities: could not find the "'.concat(t,'" edge in the graph.'));return[e.source.key,e.target.key]},o.opposite=function(t,e){t=""+t,e=""+e;var n=this._edges.get(e);if(!n)throw new V('Graph.opposite: could not find the "'.concat(e,'" edge in the graph.'));var i=n.source.key,o=n.target.key;if(t===i)return o;if(t===o)return i;throw new V('Graph.opposite: the "'.concat(t,'" node is not attached to the "').concat(e,'" edge (').concat(i,", ").concat(o,")."))},o.hasExtremity=function(t,e){t=""+t,e=""+e;var n=this._edges.get(t);if(!n)throw new V('Graph.hasExtremity: could not find the "'.concat(t,'" edge in the graph.'));return n.source.key===e||n.target.key===e},o.isUndirected=function(t){t=""+t;var e=this._edges.get(t);if(!e)throw new V('Graph.isUndirected: could not find the "'.concat(t,'" edge in the graph.'));return e.undirected},o.isDirected=function(t){t=""+t;var e=this._edges.get(t);if(!e)throw new V('Graph.isDirected: could not find the "'.concat(t,'" edge in the graph.'));return!e.undirected},o.isSelfLoop=function(t){t=""+t;var e=this._edges.get(t);if(!e)throw new V('Graph.isSelfLoop: could not find the "'.concat(t,'" edge in the graph.'));return e.source===e.target},o.addNode=function(t,e){var n=function(t,e,n){if(n&&!c(n))throw new B('Graph.addNode: invalid attributes. Expecting an object but got "'.concat(n,'"'));if(e=""+e,n=n||{},t._nodes.has(e))throw new W('Graph.addNode: the "'.concat(e,'" node already exist in the graph.'));var i=new t.NodeDataClass(e,n);return t._nodes.set(e,i),t.emit("nodeAdded",{key:e,attributes:n}),i}(this,t,e);return n.key},o.mergeNode=function(t,e){if(e&&!c(e))throw new B('Graph.mergeNode: invalid attributes. Expecting an object but got "'.concat(e,'"'));t=""+t,e=e||{};var n=this._nodes.get(t);return n?(e&&(a(n.attributes,e),this.emit("nodeAttributesUpdated",{type:"merge",key:t,attributes:n.attributes,data:e})),[t,!1]):(n=new this.NodeDataClass(t,e),this._nodes.set(t,n),this.emit("nodeAdded",{key:t,attributes:e}),[t,!0])},o.updateNode=function(t,e){if(e&&"function"!=typeof e)throw new B('Graph.updateNode: invalid updater function. Expecting a function but got "'.concat(e,'"'));t=""+t;var n=this._nodes.get(t);if(n){if(e){var i=n.attributes;n.attributes=e(i),this.emit("nodeAttributesUpdated",{type:"replace",key:t,attributes:n.attributes})}return[t,!1]}var o=e?e({}):{};return n=new this.NodeDataClass(t,o),this._nodes.set(t,n),this.emit("nodeAdded",{key:t,attributes:o}),[t,!0]},o.dropNode=function(t){t=""+t;var e,n=this._nodes.get(t);if(!n)throw new V('Graph.dropNode: could not find the "'.concat(t,'" node in the graph.'));if("undirected"!==this.type){for(var i in n.out){e=n.out[i];do{Tt(this,e),e=e.next}while(e)}for(var o in n.in){e=n.in[o];do{Tt(this,e),e=e.next}while(e)}}if("directed"!==this.type)for(var r in n.undirected){e=n.undirected[r];do{Tt(this,e),e=e.next}while(e)}this._nodes.delete(t),this.emit("nodeDropped",{key:t,attributes:n.attributes})},o.dropEdge=function(t){var e;if(arguments.length>1){var n=""+arguments[0],i=""+arguments[1];if(!(e=l(this,n,i,this.type)))throw new V('Graph.dropEdge: could not find the "'.concat(n,'" -> "').concat(i,'" edge in the graph.'))}else if(t=""+t,!(e=this._edges.get(t)))throw new V('Graph.dropEdge: could not find the "'.concat(t,'" edge in the graph.'));return Tt(this,e),this},o.dropDirectedEdge=function(t,e){if(arguments.length<2)throw new W("Graph.dropDirectedEdge: it does not make sense to try and drop a directed edge by key. What if the edge with this key is undirected? Use #.dropEdge for this purpose instead.");if(this.multi)throw new W("Graph.dropDirectedEdge: cannot use a {source,target} combo when dropping an edge in a MultiGraph since we cannot infer the one you want to delete as there could be multiple ones.");var n=l(this,t=""+t,e=""+e,"directed");if(!n)throw new V('Graph.dropDirectedEdge: could not find a "'.concat(t,'" -> "').concat(e,'" edge in the graph.'));return Tt(this,n),this},o.dropUndirectedEdge=function(t,e){if(arguments.length<2)throw new W("Graph.dropUndirectedEdge: it does not make sense to drop a directed edge by key. What if the edge with this key is undirected? Use #.dropEdge for this purpose instead.");if(this.multi)throw new W("Graph.dropUndirectedEdge: cannot use a {source,target} combo when dropping an edge in a MultiGraph since we cannot infer the one you want to delete as there could be multiple ones.");var n=l(this,t,e,"undirected");if(!n)throw new V('Graph.dropUndirectedEdge: could not find a "'.concat(t,'" -> "').concat(e,'" edge in the graph.'));return Tt(this,n),this},o.clear=function(){this._edges.clear(),this._nodes.clear(),this._resetInstanceCounters(),this.emit("cleared")},o.clearEdges=function(){for(var t,e=this._nodes.values();!0!==(t=e.next()).done;)t.value.clear();this._edges.clear(),this._resetInstanceCounters(),this.emit("edgesCleared")},o.getAttribute=function(t){return this._attributes[t]},o.getAttributes=function(){return this._attributes},o.hasAttribute=function(t){return this._attributes.hasOwnProperty(t)},o.setAttribute=function(t,e){return this._attributes[t]=e,this.emit("attributesUpdated",{type:"set",attributes:this._attributes,name:t}),this},o.updateAttribute=function(t,e){if("function"!=typeof e)throw new B("Graph.updateAttribute: updater should be a function.");var n=this._attributes[t];return this._attributes[t]=e(n),this.emit("attributesUpdated",{type:"set",attributes:this._attributes,name:t}),this},o.removeAttribute=function(t){return delete this._attributes[t],this.emit("attributesUpdated",{type:"remove",attributes:this._attributes,name:t}),this},o.replaceAttributes=function(t){if(!c(t))throw new B("Graph.replaceAttributes: provided attributes are not a plain object.");return this._attributes=t,this.emit("attributesUpdated",{type:"replace",attributes:this._attributes}),this},o.mergeAttributes=function(t){if(!c(t))throw new B("Graph.mergeAttributes: provided attributes are not a plain object.");return a(this._attributes,t),this.emit("attributesUpdated",{type:"merge",attributes:this._attributes,data:t}),this},o.updateAttributes=function(t){if("function"!=typeof t)throw new B("Graph.updateAttributes: provided updater is not a function.");return this._attributes=t(this._attributes),this.emit("attributesUpdated",{type:"update",attributes:this._attributes}),this},o.updateEachNodeAttributes=function(t,e){if("function"!=typeof t)throw new B("Graph.updateEachNodeAttributes: expecting an updater function.");if(e&&!p(e))throw new B("Graph.updateEachNodeAttributes: invalid hints. Expecting an object having the following shape: {attributes?: [string]}");for(var n,i,o=this._nodes.values();!0!==(n=o.next()).done;)(i=n.value).attributes=t(i.key,i.attributes);this.emit("eachNodeAttributesUpdated",{hints:e||null})},o.updateEachEdgeAttributes=function(t,e){if("function"!=typeof t)throw new B("Graph.updateEachEdgeAttributes: expecting an updater function.");if(e&&!p(e))throw new B("Graph.updateEachEdgeAttributes: invalid hints. Expecting an object having the following shape: {attributes?: [string]}");for(var n,i,o,r,s=this._edges.values();!0!==(n=s.next()).done;)o=(i=n.value).source,r=i.target,i.attributes=t(i.key,i.attributes,o.key,r.key,o.attributes,r.attributes,i.undirected);this.emit("eachEdgeAttributesUpdated",{hints:e||null})},o.forEachAdjacencyEntry=function(t){if("function"!=typeof t)throw new B("Graph.forEachAdjacencyEntry: expecting a callback.");ft(!1,!1,!1,this,t)},o.forEachAdjacencyEntryWithOrphans=function(t){if("function"!=typeof t)throw new B("Graph.forEachAdjacencyEntryWithOrphans: expecting a callback.");ft(!1,!1,!0,this,t)},o.forEachAssymetricAdjacencyEntry=function(t){if("function"!=typeof t)throw new B("Graph.forEachAssymetricAdjacencyEntry: expecting a callback.");ft(!1,!0,!1,this,t)},o.forEachAssymetricAdjacencyEntryWithOrphans=function(t){if("function"!=typeof t)throw new B("Graph.forEachAssymetricAdjacencyEntryWithOrphans: expecting a callback.");ft(!1,!0,!0,this,t)},o.nodes=function(){return"function"==typeof Array.from?Array.from(this._nodes.keys()):F(this._nodes.keys(),this._nodes.size)},o.forEachNode=function(t){if("function"!=typeof t)throw new B("Graph.forEachNode: expecting a callback.");for(var e,n,i=this._nodes.values();!0!==(e=i.next()).done;)t((n=e.value).key,n.attributes)},o.findNode=function(t){if("function"!=typeof t)throw new B("Graph.findNode: expecting a callback.");for(var e,n,i=this._nodes.values();!0!==(e=i.next()).done;)if(t((n=e.value).key,n.attributes))return n.key},o.mapNodes=function(t){if("function"!=typeof t)throw new B("Graph.mapNode: expecting a callback.");for(var e,n,i=this._nodes.values(),o=new Array(this.order),r=0;!0!==(e=i.next()).done;)n=e.value,o[r++]=t(n.key,n.attributes);return o},o.someNode=function(t){if("function"!=typeof t)throw new B("Graph.someNode: expecting a callback.");for(var e,n,i=this._nodes.values();!0!==(e=i.next()).done;)if(t((n=e.value).key,n.attributes))return!0;return!1},o.everyNode=function(t){if("function"!=typeof t)throw new B("Graph.everyNode: expecting a callback.");for(var e,n,i=this._nodes.values();!0!==(e=i.next()).done;)if(!t((n=e.value).key,n.attributes))return!1;return!0},o.filterNodes=function(t){if("function"!=typeof t)throw new B("Graph.filterNodes: expecting a callback.");for(var e,n,i=this._nodes.values(),o=[];!0!==(e=i.next()).done;)t((n=e.value).key,n.attributes)&&o.push(n.key);return o},o.reduceNodes=function(t,e){if("function"!=typeof t)throw new B("Graph.reduceNodes: expecting a callback.");if(arguments.length<2)throw new B("Graph.reduceNodes: missing initial value. You must provide it because the callback takes more than one argument and we cannot infer the initial value from the first iteration, as you could with a simple array.");for(var n,i,o=e,r=this._nodes.values();!0!==(n=r.next()).done;)o=t(o,(i=n.value).key,i.attributes);return o},o.nodeEntries=function(){var t=this._nodes.values();return new N((function(){var e=t.next();if(e.done)return e;var n=e.value;return{value:{node:n.key,attributes:n.attributes},done:!1}}))},o.export=function(){var t=this,e=new Array(this._nodes.size),n=0;this._nodes.forEach((function(t,i){e[n++]=function(t,e){var n={key:t};return h(e.attributes)||(n.attributes=a({},e.attributes)),n}(i,t)}));var i=new Array(this._edges.size);return n=0,this._edges.forEach((function(e,o){i[n++]=function(t,e,n){var i={key:e,source:n.source.key,target:n.target.key};return h(n.attributes)||(i.attributes=a({},n.attributes)),"mixed"===t&&n.undirected&&(i.undirected=!0),i}(t.type,o,e)})),{options:{type:this.type,multi:this.multi,allowSelfLoops:this.allowSelfLoops},attributes:this.getAttributes(),nodes:e,edges:i}},o.import=function(t){var e,n,o,r,s,a=this,l=arguments.length>1&&void 0!==arguments[1]&&arguments[1];if(t instanceof i)return t.forEachNode((function(t,e){l?a.mergeNode(t,e):a.addNode(t,e)})),t.forEachEdge((function(t,e,n,i,o,r,s){l?s?a.mergeUndirectedEdgeWithKey(t,n,i,e):a.mergeDirectedEdgeWithKey(t,n,i,e):s?a.addUndirectedEdgeWithKey(t,n,i,e):a.addDirectedEdgeWithKey(t,n,i,e)})),this;if(!c(t))throw new B("Graph.import: invalid argument. Expecting a serialized graph or, alternatively, a Graph instance.");if(t.attributes){if(!c(t.attributes))throw new B("Graph.import: invalid attributes. Expecting a plain object.");l?this.mergeAttributes(t.attributes):this.replaceAttributes(t.attributes)}if(t.nodes){if(o=t.nodes,!Array.isArray(o))throw new B("Graph.import: invalid nodes. Expecting an array.");for(e=0,n=o.length;e<n;e++){gt(r=o[e]);var h=r,u=h.key,d=h.attributes;l?this.mergeNode(u,d):this.addNode(u,d)}}if(t.edges){var p=!1;if("undirected"===this.type&&(p=!0),o=t.edges,!Array.isArray(o))throw new B("Graph.import: invalid edges. Expecting an array.");for(e=0,n=o.length;e<n;e++){yt(s=o[e]);var m=s,f=m.source,g=m.target,y=m.attributes,b=m.undirected,v=void 0===b?p:b;"key"in s?(l?v?this.mergeUndirectedEdgeWithKey:this.mergeDirectedEdgeWithKey:v?this.addUndirectedEdgeWithKey:this.addDirectedEdgeWithKey).call(this,s.key,f,g,y):(l?v?this.mergeUndirectedEdge:this.mergeDirectedEdge:v?this.addUndirectedEdge:this.addDirectedEdge).call(this,f,g,y)}}return this},o.nullCopy=function(t){var e=new i(a({},this._options,t));return e.replaceAttributes(a({},this.getAttributes())),e},o.emptyCopy=function(t){var e=this.nullCopy(t);return this._nodes.forEach((function(t,n){var i=a({},t.attributes);t=new e.NodeDataClass(n,i),e._nodes.set(n,t)})),e},o.copy=function(t){if("string"==typeof(t=t||{}).type&&t.type!==this.type&&"mixed"!==t.type)throw new W('Graph.copy: cannot create an incompatible copy from "'.concat(this.type,'" type to "').concat(t.type,'" because this would mean losing information about the current graph.'));if("boolean"==typeof t.multi&&t.multi!==this.multi&&!0!==t.multi)throw new W("Graph.copy: cannot create an incompatible copy by downgrading a multi graph to a simple one because this would mean losing information about the current graph.");if("boolean"==typeof t.allowSelfLoops&&t.allowSelfLoops!==this.allowSelfLoops&&!0!==t.allowSelfLoops)throw new W("Graph.copy: cannot create an incompatible copy from a graph allowing self loops to one that does not because this would mean losing information about the current graph.");for(var e,n,i=this.emptyCopy(t),o=this._edges.values();!0!==(e=o.next()).done;)xt(i,"copy",!1,(n=e.value).undirected,n.key,n.source.key,n.target.key,a({},n.attributes));return i},o.toJSON=function(){return this.export()},o.toString=function(){return"[object Graph]"},o.inspect=function(){var e=this,n={};this._nodes.forEach((function(t,e){n[e]=t.attributes}));var i={},o={};this._edges.forEach((function(t,n){var r,s=t.undirected?"--":"->",a="",l=t.source.key,c=t.target.key;t.undirected&&l>c&&(r=l,l=c,c=r);var h="(".concat(l,")").concat(s,"(").concat(c,")");n.startsWith("geid_")?e.multi&&(void 0===o[h]?o[h]=0:o[h]++,a+="".concat(o[h],". ")):a+="[".concat(n,"]: "),i[a+=h]=t.attributes}));var r={};for(var s in this)this.hasOwnProperty(s)&&!Ct.has(s)&&"function"!=typeof this[s]&&"symbol"!==t(s)&&(r[s]=this[s]);return r.attributes=this._attributes,r.nodes=n,r.edges=i,u(r,"constructor",this.constructor),r},i}(f.exports.EventEmitter);"undefined"!=typeof Symbol&&(_t.prototype[Symbol.for("nodejs.util.inspect.custom")]=_t.prototype.inspect),[{name:function(t){return"".concat(t,"Edge")},generateKey:!0},{name:function(t){return"".concat(t,"DirectedEdge")},generateKey:!0,type:"directed"},{name:function(t){return"".concat(t,"UndirectedEdge")},generateKey:!0,type:"undirected"},{name:function(t){return"".concat(t,"EdgeWithKey")}},{name:function(t){return"".concat(t,"DirectedEdgeWithKey")},type:"directed"},{name:function(t){return"".concat(t,"UndirectedEdgeWithKey")},type:"undirected"}].forEach((function(t){["add","merge","update"].forEach((function(e){var n=t.name(e),i="add"===e?xt:Et;t.generateKey?_t.prototype[n]=function(o,r,s){return i(this,n,!0,"undirected"===(t.type||this.type),null,o,r,s,"update"===e)}:_t.prototype[n]=function(o,r,s,a){return i(this,n,!1,"undirected"===(t.type||this.type),o,r,s,a,"update"===e)}}))})),function(t){K.forEach((function(e){var n=e.name,i=e.attacher;i(t,n("Node"),0),i(t,n("Source"),1),i(t,n("Target"),2),i(t,n("Opposite"),3)}))}(_t),function(t){Z.forEach((function(e){var n=e.name,i=e.attacher;i(t,n("Edge"),"mixed"),i(t,n("DirectedEdge"),"directed"),i(t,n("UndirectedEdge"),"undirected")}))}(_t),function(t){tt.forEach((function(e){!function(t,e){var n=e.name,i=e.type,o=e.direction;t.prototype[n]=function(t,e){if("mixed"!==i&&"mixed"!==this.type&&i!==this.type)return[];if(!arguments.length)return function(t,e){if(0===t.size)return[];if("mixed"===e||e===t.type)return"function"==typeof Array.from?Array.from(t._edges.keys()):F(t._edges.keys(),t._edges.size);for(var n,i,o="undirected"===e?t.undirectedSize:t.directedSize,r=new Array(o),s="undirected"===e,a=t._edges.values(),l=0;!0!==(n=a.next()).done;)(i=n.value).undirected===s&&(r[l++]=i.key);return r}(this,i);if(1===arguments.length){t=""+t;var r=this._nodes.get(t);if(void 0===r)throw new V("Graph.".concat(n,': could not find the "').concat(t,'" node in the graph.'));return function(t,e,n,i){var o=[];return lt(!1,t,e,n,i,(function(t){o.push(t)})),o}(this.multi,"mixed"===i?this.type:i,o,r)}if(2===arguments.length){t=""+t,e=""+e;var s=this._nodes.get(t);if(!s)throw new V("Graph.".concat(n,': could not find the "').concat(t,'" source node in the graph.'));if(!this._nodes.has(e))throw new V("Graph.".concat(n,': could not find the "').concat(e,'" target node in the graph.'));return function(t,e,n,i,o){var r=[];return ct(!1,t,e,n,i,o,(function(t){r.push(t)})),r}(i,this.multi,o,s,e)}throw new B("Graph.".concat(n,": too many arguments (expecting 0, 1 or 2 and got ").concat(arguments.length,")."))}}(t,e),function(t,e){var n=e.name,i=e.type,o=e.direction,r="forEach"+n[0].toUpperCase()+n.slice(1,-1);t.prototype[r]=function(t,e,n){if("mixed"===i||"mixed"===this.type||i===this.type){if(1===arguments.length)return at(!1,this,i,n=t);if(2===arguments.length){t=""+t,n=e;var s=this._nodes.get(t);if(void 0===s)throw new V("Graph.".concat(r,': could not find the "').concat(t,'" node in the graph.'));return lt(!1,this.multi,"mixed"===i?this.type:i,o,s,n)}if(3===arguments.length){t=""+t,e=""+e;var a=this._nodes.get(t);if(!a)throw new V("Graph.".concat(r,': could not find the "').concat(t,'" source node in the graph.'));if(!this._nodes.has(e))throw new V("Graph.".concat(r,': could not find the "').concat(e,'" target node in the graph.'));return ct(!1,i,this.multi,o,a,e,n)}throw new B("Graph.".concat(r,": too many arguments (expecting 1, 2 or 3 and got ").concat(arguments.length,")."))}};var s="map"+n[0].toUpperCase()+n.slice(1);t.prototype[s]=function(){var t,e=Array.prototype.slice.call(arguments),n=e.pop();if(0===e.length){var o=0;"directed"!==i&&(o+=this.undirectedSize),"undirected"!==i&&(o+=this.directedSize),t=new Array(o);var s=0;e.push((function(e,i,o,r,a,l,c){t[s++]=n(e,i,o,r,a,l,c)}))}else t=[],e.push((function(e,i,o,r,s,a,l){t.push(n(e,i,o,r,s,a,l))}));return this[r].apply(this,e),t};var a="filter"+n[0].toUpperCase()+n.slice(1);t.prototype[a]=function(){var t=Array.prototype.slice.call(arguments),e=t.pop(),n=[];return t.push((function(t,i,o,r,s,a,l){e(t,i,o,r,s,a,l)&&n.push(t)})),this[r].apply(this,t),n};var l="reduce"+n[0].toUpperCase()+n.slice(1);t.prototype[l]=function(){var t,e,n=Array.prototype.slice.call(arguments);if(n.length<2||n.length>4)throw new B("Graph.".concat(l,": invalid number of arguments (expecting 2, 3 or 4 and got ").concat(n.length,")."));if("function"==typeof n[n.length-1]&&"function"!=typeof n[n.length-2])throw new B("Graph.".concat(l,": missing initial value. You must provide it because the callback takes more than one argument and we cannot infer the initial value from the first iteration, as you could with a simple array."));2===n.length?(t=n[0],e=n[1],n=[]):3===n.length?(t=n[1],e=n[2],n=[n[0]]):4===n.length&&(t=n[2],e=n[3],n=[n[0],n[1]]);var i=e;return n.push((function(e,n,o,r,s,a,l){i=t(i,e,n,o,r,s,a,l)})),this[r].apply(this,n),i}}(t,e),function(t,e){var n=e.name,i=e.type,o=e.direction,r="find"+n[0].toUpperCase()+n.slice(1,-1);t.prototype[r]=function(t,e,n){if("mixed"!==i&&"mixed"!==this.type&&i!==this.type)return!1;if(1===arguments.length)return at(!0,this,i,n=t);if(2===arguments.length){t=""+t,n=e;var s=this._nodes.get(t);if(void 0===s)throw new V("Graph.".concat(r,': could not find the "').concat(t,'" node in the graph.'));return lt(!0,this.multi,"mixed"===i?this.type:i,o,s,n)}if(3===arguments.length){t=""+t,e=""+e;var a=this._nodes.get(t);if(!a)throw new V("Graph.".concat(r,': could not find the "').concat(t,'" source node in the graph.'));if(!this._nodes.has(e))throw new V("Graph.".concat(r,': could not find the "').concat(e,'" target node in the graph.'));return ct(!0,i,this.multi,o,a,e,n)}throw new B("Graph.".concat(r,": too many arguments (expecting 1, 2 or 3 and got ").concat(arguments.length,")."))};var s="some"+n[0].toUpperCase()+n.slice(1,-1);t.prototype[s]=function(){var t=Array.prototype.slice.call(arguments),e=t.pop();return t.push((function(t,n,i,o,r,s,a){return e(t,n,i,o,r,s,a)})),!!this[r].apply(this,t)};var a="every"+n[0].toUpperCase()+n.slice(1,-1);t.prototype[a]=function(){var t=Array.prototype.slice.call(arguments),e=t.pop();return t.push((function(t,n,i,o,r,s,a){return!e(t,n,i,o,r,s,a)})),!this[r].apply(this,t)}}(t,e),function(t,e){var n=e.name,i=e.type,o=e.direction,r=n.slice(0,-1)+"Entries";t.prototype[r]=function(t,e){if("mixed"!==i&&"mixed"!==this.type&&i!==this.type)return N.empty();if(!arguments.length)return function(t,e){if(0===t.size)return N.empty();var n="mixed"!==e&&e!==t.type,i="undirected"===e,o=t._edges.values();return new N((function(){for(var t,e;;){if((t=o.next()).done)return t;if(e=t.value,!n||e.undirected===i)break}return{value:{edge:e.key,attributes:e.attributes,source:e.source.key,target:e.target.key,sourceAttributes:e.source.attributes,targetAttributes:e.target.attributes,undirected:e.undirected},done:!1}}))}(this,i);if(1===arguments.length){t=""+t;var n=this._nodes.get(t);if(!n)throw new V("Graph.".concat(r,': could not find the "').concat(t,'" node in the graph.'));return function(t,e,n){var i=N.empty();return"undirected"!==t&&("out"!==e&&void 0!==n.in&&(i=Q(i,it(n.in))),"in"!==e&&void 0!==n.out&&(i=Q(i,it(n.out,e?void 0:n.key)))),"directed"!==t&&void 0!==n.undirected&&(i=Q(i,it(n.undirected))),i}(i,o,n)}if(2===arguments.length){t=""+t,e=""+e;var s=this._nodes.get(t);if(!s)throw new V("Graph.".concat(r,': could not find the "').concat(t,'" source node in the graph.'));if(!this._nodes.has(e))throw new V("Graph.".concat(r,': could not find the "').concat(e,'" target node in the graph.'));return function(t,e,n,i){var o=N.empty();return"undirected"!==t&&(void 0!==n.in&&"out"!==e&&i in n.in&&(o=Q(o,st(n.in,i))),void 0!==n.out&&"in"!==e&&i in n.out&&(e||n.key!==i)&&(o=Q(o,st(n.out,i)))),"directed"!==t&&void 0!==n.undirected&&i in n.undirected&&(o=Q(o,st(n.undirected,i))),o}(i,o,s,e)}throw new B("Graph.".concat(r,": too many arguments (expecting 0, 1 or 2 and got ").concat(arguments.length,")."))}}(t,e)}))}(_t),function(t){ht.forEach((function(e){(function(t,e){var n=e.name,i=e.type,o=e.direction;t.prototype[n]=function(t){if("mixed"!==i&&"mixed"!==this.type&&i!==this.type)return[];t=""+t;var e=this._nodes.get(t);if(void 0===e)throw new V("Graph.".concat(n,': could not find the "').concat(t,'" node in the graph.'));return function(t,e,n){if("mixed"!==t){if("undirected"===t)return Object.keys(n.undirected);if("string"==typeof e)return Object.keys(n[e])}var i=[];return pt(!1,t,e,n,(function(t){i.push(t)})),i}("mixed"===i?this.type:i,o,e)}})(t,e),function(t,e){var n=e.name,i=e.type,o=e.direction,r="forEach"+n[0].toUpperCase()+n.slice(1,-1);t.prototype[r]=function(t,e){if("mixed"===i||"mixed"===this.type||i===this.type){t=""+t;var n=this._nodes.get(t);if(void 0===n)throw new V("Graph.".concat(r,': could not find the "').concat(t,'" node in the graph.'));pt(!1,"mixed"===i?this.type:i,o,n,e)}};var s="map"+n[0].toUpperCase()+n.slice(1);t.prototype[s]=function(t,e){var n=[];return this[r](t,(function(t,i){n.push(e(t,i))})),n};var a="filter"+n[0].toUpperCase()+n.slice(1);t.prototype[a]=function(t,e){var n=[];return this[r](t,(function(t,i){e(t,i)&&n.push(t)})),n};var l="reduce"+n[0].toUpperCase()+n.slice(1);t.prototype[l]=function(t,e,n){if(arguments.length<3)throw new B("Graph.".concat(l,": missing initial value. You must provide it because the callback takes more than one argument and we cannot infer the initial value from the first iteration, as you could with a simple array."));var i=n;return this[r](t,(function(t,n){i=e(i,t,n)})),i}}(t,e),function(t,e){var n=e.name,i=e.type,o=e.direction,r=n[0].toUpperCase()+n.slice(1,-1),s="find"+r;t.prototype[s]=function(t,e){if("mixed"===i||"mixed"===this.type||i===this.type){t=""+t;var n=this._nodes.get(t);if(void 0===n)throw new V("Graph.".concat(s,': could not find the "').concat(t,'" node in the graph.'));return pt(!0,"mixed"===i?this.type:i,o,n,e)}};var a="some"+r;t.prototype[a]=function(t,e){return!!this[s](t,e)};var l="every"+r;t.prototype[l]=function(t,e){return!this[s](t,(function(t,n){return!e(t,n)}))}}(t,e),function(t,e){var n=e.name,i=e.type,o=e.direction,r=n.slice(0,-1)+"Entries";t.prototype[r]=function(t){if("mixed"!==i&&"mixed"!==this.type&&i!==this.type)return N.empty();t=""+t;var e=this._nodes.get(t);if(void 0===e)throw new V("Graph.".concat(r,': could not find the "').concat(t,'" node in the graph.'));return function(t,e,n){if("mixed"!==t){if("undirected"===t)return mt(null,n,n.undirected);if("string"==typeof e)return mt(null,n,n[e])}var i=N.empty(),o=new ut;return"undirected"!==t&&("out"!==e&&(i=Q(i,mt(o,n,n.in))),"in"!==e&&(i=Q(i,mt(o,n,n.out)))),"directed"!==t&&(i=Q(i,mt(o,n,n.undirected))),i}("mixed"===i?this.type:i,o,e)}}(t,e)}))}(_t);var Mt=function(t){function n(e){var n=a({type:"directed"},e);if("multi"in n&&!1!==n.multi)throw new B("DirectedGraph.from: inconsistent indication that the graph should be multi in given options!");if("directed"!==n.type)throw new B('DirectedGraph.from: inconsistent "'+n.type+'" type in given options!');return t.call(this,n)||this}return e(n,t),n}(_t),It=function(t){function n(e){var n=a({type:"undirected"},e);if("multi"in n&&!1!==n.multi)throw new B("UndirectedGraph.from: inconsistent indication that the graph should be multi in given options!");if("undirected"!==n.type)throw new B('UndirectedGraph.from: inconsistent "'+n.type+'" type in given options!');return t.call(this,n)||this}return e(n,t),n}(_t),Lt=function(t){function n(e){var n=a({multi:!0},e);if("multi"in n&&!0!==n.multi)throw new B("MultiGraph.from: inconsistent indication that the graph should be simple in given options!");return t.call(this,n)||this}return e(n,t),n}(_t),Nt=function(t){function n(e){var n=a({type:"directed",multi:!0},e);if("multi"in n&&!0!==n.multi)throw new B("MultiDirectedGraph.from: inconsistent indication that the graph should be simple in given options!");if("directed"!==n.type)throw new B('MultiDirectedGraph.from: inconsistent "'+n.type+'" type in given options!');return t.call(this,n)||this}return e(n,t),n}(_t),Pt=function(t){function n(e){var n=a({type:"undirected",multi:!0},e);if("multi"in n&&!0!==n.multi)throw new B("MultiUndirectedGraph.from: inconsistent indication that the graph should be simple in given options!");if("undirected"!==n.type)throw new B('MultiUndirectedGraph.from: inconsistent "'+n.type+'" type in given options!');return t.call(this,n)||this}return e(n,t),n}(_t);function $t(t){t.from=function(e,n){var i=a({},e.options,n),o=new t(i);return o.import(e),o}}return $t(_t),$t(Mt),$t(It),$t(Lt),$t(Nt),$t(Pt),_t.Graph=_t,_t.DirectedGraph=Mt,_t.UndirectedGraph=It,_t.MultiGraph=Lt,_t.MultiDirectedGraph=Nt,_t.MultiUndirectedGraph=Pt,_t.InvalidArgumentsGraphError=B,_t.NotFoundGraphError=V,_t.UsageGraphError=W,_t}()},944:(t,e)=>{"use strict";e.Vb=void 0,e.Vb=function(t,e,n){var i=function(t,e,n){if(0===t.length||0===e.length)return 0;if(n&&!n.caseSensitive&&(t=t.toUpperCase(),e=e.toUpperCase()),t===e)return 1;for(var i=0,o=t.length,r=e.length,s=Math.floor(Math.max(o,r)/2)-1,a=new Array(o),l=new Array(r),c=0;c<o;c++)for(var h=Math.max(0,c-s);h<=Math.min(r,c+s+1);h++)if(!a[c]&&!l[h]&&t[c]===e[h]){++i,a[c]=l[h]=!0;break}if(0===i)return 0;var u=0,d=0;for(c=0;c<o;c++)if(a[c]){for(;!l[d];)d++;t.charAt(c)!==e.charAt(d++)&&u++}return(i/o+i/r+(i-(u/=2))/i)/3}(t,e,n),o=0;if(i>.7){for(var r=Math.min(t.length,e.length),s=0;t[s]===e[s]&&s<4&&s<r;)++o,s++;i+=.1*o*(1-i)}return i}},7106:t=>{"use strict";var e=t.exports=function(t,e,i){"function"==typeof e&&(i=e,e={}),n(e,"function"==typeof(i=e.cb||i)?i:i.pre||function(){},i.post||function(){},t,"",t)};function n(t,i,o,r,s,a,l,c,h,u){if(r&&"object"==typeof r&&!Array.isArray(r)){for(var d in i(r,s,a,l,c,h,u),r){var p=r[d];if(Array.isArray(p)){if(d in e.arrayKeywords)for(var m=0;m<p.length;m++)n(t,i,o,p[m],s+"/"+d+"/"+m,a,s,d,r,m)}else if(d in e.propsKeywords){if(p&&"object"==typeof p)for(var f in p)n(t,i,o,p[f],s+"/"+d+"/"+f.replace(/~/g,"~0").replace(/\//g,"~1"),a,s,d,r,f)}else(d in e.keywords||t.allKeys&&!(d in e.skipKeywords))&&n(t,i,o,p,s+"/"+d,a,s,d,r)}o(r,s,a,l,c,h,u)}}e.keywords={additionalItems:!0,items:!0,contains:!0,additionalProperties:!0,propertyNames:!0,not:!0,if:!0,then:!0,else:!0},e.arrayKeywords={items:!0,allOf:!0,anyOf:!0,oneOf:!0},e.propsKeywords={$defs:!0,definitions:!0,properties:!0,patternProperties:!0,dependencies:!0},e.skipKeywords={default:!0,enum:!0,const:!0,required:!0,maximum:!0,minimum:!0,exclusiveMaximum:!0,exclusiveMinimum:!0,multipleOf:!0,maxLength:!0,minLength:!0,pattern:!0,format:!0,maxItems:!0,minItems:!0,uniqueItems:!0,maxProperties:!0,minProperties:!0}},5072:t=>{"use strict";var e=[];function n(t){for(var n=-1,i=0;i<e.length;i++)if(e[i].identifier===t){n=i;break}return n}function i(t,i){for(var r={},s=[],a=0;a<t.length;a++){var l=t[a],c=i.base?l[0]+i.base:l[0],h=r[c]||0,u="".concat(c," ").concat(h);r[c]=h+1;var d=n(u),p={css:l[1],media:l[2],sourceMap:l[3],supports:l[4],layer:l[5]};if(-1!==d)e[d].references++,e[d].updater(p);else{var m=o(p,i);i.byIndex=a,e.splice(a,0,{identifier:u,updater:m,references:1})}s.push(u)}return s}function o(t,e){var n=e.domAPI(e);return n.update(t),function(e){if(e){if(e.css===t.css&&e.media===t.media&&e.sourceMap===t.sourceMap&&e.supports===t.supports&&e.layer===t.layer)return;n.update(t=e)}else n.remove()}}t.exports=function(t,o){var r=i(t=t||[],o=o||{});return function(t){t=t||[];for(var s=0;s<r.length;s++){var a=n(r[s]);e[a].references--}for(var l=i(t,o),c=0;c<r.length;c++){var h=n(r[c]);0===e[h].references&&(e[h].updater(),e.splice(h,1))}r=l}}},7659:t=>{"use strict";var e={};t.exports=function(t,n){var i=function(t){if(void 0===e[t]){var n=document.querySelector(t);if(window.HTMLIFrameElement&&n instanceof window.HTMLIFrameElement)try{n=n.contentDocument.head}catch(t){n=null}e[t]=n}return e[t]}(t);if(!i)throw new Error("Couldn't find a style target. This probably means that the value for the 'insert' parameter is invalid.");i.appendChild(n)}},540:t=>{"use strict";t.exports=function(t){var e=document.createElement("style");return t.setAttributes(e,t.attributes),t.insert(e,t.options),e}},5056:(t,e,n)=>{"use strict";t.exports=function(t){var e=n.nc;e&&t.setAttribute("nonce",e)}},7825:t=>{"use strict";t.exports=function(t){if("undefined"==typeof document)return{update:function(){},remove:function(){}};var e=t.insertStyleElement(t);return{update:function(n){!function(t,e,n){var i="";n.supports&&(i+="@supports (".concat(n.supports,") {")),n.media&&(i+="@media ".concat(n.media," {"));var o=void 0!==n.layer;o&&(i+="@layer".concat(n.layer.length>0?" ".concat(n.layer):""," {")),i+=n.css,o&&(i+="}"),n.media&&(i+="}"),n.supports&&(i+="}");var r=n.sourceMap;r&&"undefined"!=typeof btoa&&(i+="\n/*# sourceMappingURL=data:application/json;base64,".concat(btoa(unescape(encodeURIComponent(JSON.stringify(r))))," */")),e.styleTagTransform(i,t,e.options)}(e,t,n)},remove:function(){!function(t){if(null===t.parentNode)return!1;t.parentNode.removeChild(t)}(e)}}}},1113:t=>{"use strict";t.exports=function(t,e){if(e.styleSheet)e.styleSheet.cssText=t;else{for(;e.firstChild;)e.removeChild(e.firstChild);e.appendChild(document.createTextNode(t))}}},6723:(t,e,n)=>{"use strict";n.r(e),n.d(e,{GetRegionEditor:()=>ho,SeqActivityCliffsEditor:()=>mo,SeqPaletteCustom:()=>no,SequenceSpaceEditor:()=>po,SplitToMonomersEditor:()=>uo,SubsequenceSearchTopMenu:()=>Ko,_package:()=>to,activityCliffs:()=>To,addCopyMenu:()=>pr,alignSequences:()=>Ro,bioSubstructureFilter:()=>or,bioSubstructureFilterTest:()=>rr,compositionAnalysis:()=>ko,compositionAnalysisWidget:()=>vo,convertColumnAction:()=>Fo,convertDialog:()=>Go,customSequenceCellRenderer:()=>fo,demoBioActivityCliffs:()=>gr,demoBioAtomicLevel:()=>yr,demoBioSequenceSpace:()=>fr,demoBioSimilarityDiversity:()=>mr,detectMacromoleculeProbe:()=>Cr,diversitySearchTopMenu:()=>zo,diversitySearchViewer:()=>qo,fastaSequenceCellRenderer:()=>go,getBioLib:()=>so,getHelmMonomers:()=>Wo,getMolFromHelm:()=>Sr,getMonomerLibHelper:()=>eo,getRegion:()=>xo,getRegionApp:()=>lr,getRegionHelmApp:()=>cr,getRegionPanel:()=>lo,getRegionTopMenu:()=>Eo,getSeqHandler:()=>ao,getSeqHelper:()=>Ar,helmPreprocessingFunction:()=>Mo,importBam:()=>Ho,importFasta:()=>Oo,initBio:()=>oo,libraryPanel:()=>co,longSeqTableFasta:()=>ur,longSeqTableHelm:()=>dr,longSeqTableSeparator:()=>hr,macroMolColumnPropertyPanel:()=>bo,macromoleculeDifferenceCellRenderer:()=>wo,macromoleculePreprocessingFunction:()=>_o,manageLibrariesAppTreeBrowser:()=>nr,manageLibrariesView:()=>Qo,manageMonomerLibraries:()=>Jo,manageMonomerLibrariesView:()=>er,manageMonomersView:()=>tr,monomerCellRenderer:()=>Do,multipleSequenceAlignmentDialog:()=>$o,saveAsFasta:()=>ir,sdfToJsonLib:()=>br,searchSubsequenceEditor:()=>Yo,separatorSequenceCellRenderer:()=>yo,seq2atomic:()=>vr,seqIdentity:()=>wr,sequenceAlignment:()=>Co,sequenceIdentityScoring:()=>Zo,sequenceSimilarityScoring:()=>Xo,sequenceSpaceTopMenu:()=>Io,sequenceTooltip:()=>ro,similaritySearchTopMenu:()=>jo,similaritySearchViewer:()=>Uo,splitToMonomersTopMenu:()=>Vo,test1:()=>xr,testDetectMacromolecule:()=>Bo,toAtomicLevel:()=>Lo,toAtomicLevelAction:()=>No,toAtomicLevelPanel:()=>Po,vdRegionsViewer:()=>So,webLogoAggApp:()=>ar,webLogoLargeApp:()=>sr,webLogoViewer:()=>Ao});var i,o,r=n(4328),s=n(7389),a=n(6082),l=n(684),c=n(9039);(o=i||(i={})).EUCLIDEAN="EUCLIDEAN",o.MANHATTAN="MANHATTAN";var h=n(1858),u=n(5072),d=n.n(u),p=n(7825),m=n.n(p),f=n(7659),g=n.n(f),y=n(5056),b=n.n(y),v=n(540),w=n.n(v),C=n(1113),A=n.n(C),S=n(7939),x={};x.styleTagTransform=A(),x.setAttributes=b(),x.insert=g().bind(null,"head"),x.domAPI=m(),x.insertStyleElement=w(),d()(S.A,x),S.A&&S.A.locals&&S.A.locals;var E=function(t,e,n,i){return new(n||(n=Promise))((function(o,r){function s(t){try{l(i.next(t))}catch(t){r(t)}}function a(t){try{l(i.throw(t))}catch(t){r(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,a)}l((i=i.apply(t,e||[])).next())}))};let T=null,_=null;function M(t,e){return t&&""!=t?t:e}n(2780);class I{constructor(){this.learningRate={uiName:"Learninig rate",value:1,tooltip:"The initial learning rate for the embedding optimization"},this.nEpochs={uiName:"Epochs",value:0,tooltip:"The number of epochs to optimize embeddings via SGD. Computed automatically if set to 0"},this.nNeighbors={uiName:"Neighbors",value:15,tooltip:"The number of nearest neighbors to construct the fuzzy manifold"},this.spread={uiName:"Spread",value:1,tooltip:"The effective scale of embedded points, used with min distance to control \n the clumped/dispersed nature of the embedding"},this.minDist={uiName:"Min distance",value:.1,tooltip:"The effective minimum distance between embedded points, \n used with spread to control the clumped/dispersed nature of the embedding"},this.randomSeed={uiName:"Random seed",value:null,tooltip:"Random seed",type:"string"},this.useWebGPU={uiName:"Use WebGPU",value:!1,tooltip:"Use WebGPU for Distance and UMAP computations",type:"boolean",disableTooltip:"WebGPU is not available"},function(){return E(this,void 0,void 0,(function*(){if(!navigator.gpu)return console.error("WebGPU is not supported in this browser"),null;if(!T&&(T=yield navigator.gpu.requestAdapter(),null==T))return null;let t=null;return"info"in T&&(t=T.info),t?M(t.description,M(t.vendor,"No GPU description available")):"No GPU description available"}))}().then((t=>{t?(this.useWebGPU.tooltip+=` (${t})`,this.useWebGPU.value=!0):(this.useWebGPU.value=!1,this.useWebGPU.disable=!0)}))}}class L{constructor(){this.epsilon={uiName:"Epsilon",value:10,tooltip:"Epsilon is learning rate"},this.perplexity={uiName:"Perplexity",value:30,tooltip:"Roughly how many neighbors each point influences"}}}Promise.resolve(),n(934),n(8903);const N="MCL";a.SEMTYPE.MOLECULE,a.SEMTYPE.MACROMOLECULE;class P{constructor(){this.epsilon={uiName:"Epsilon",value:.01,tooltip:"Minimum distance between cluster points",min:0,max:2,step:.005},this.minPts={uiName:"Minimum points",value:4,tooltip:"Minimum number of points in cluster",min:1,max:1e3,step:1}}}class ${get algorithmOptions(){const t=this.methodsParams[this.methodInput.value],e={};return Object.keys(t).forEach((n=>{null!=t[n].value&&(e[n]=t[n].value)})),e}get dbScanOptions(){return{dbScanEpsilon:this.dbScanParams.epsilon.value??.01,dbScanMinPts:this.dbScanParams.minPts.value??4}}constructor(t={}){this.editorSettings={},this.plotEmbeddingsInput=s.input.bool("Plot embeddings",{value:!0}),this.clusterEmbeddingsInput=s.input.bool("Cluster embeddings",{value:!0}),this.preprocessingFunctionInputRoot=null,this.methods=[c.c.UMAP,c.c.T_SNE],this.columnFunctionsMap={},this.supportedFunctions={},this.availableMetrics=[],this.methodSettingsDiv=s.inputs([]),this.dbScanSettingsDiv=s.inputs([]),this.preprocessingFuncSettingsDiv=s.inputs([]),this.preprocessingFunctionSettings={},this.methodsParams={[c.c.UMAP]:new I,[c.c.T_SNE]:new L},this.dbScanParams=new P,this.editorSettings=t,this.editorSettings.enableMCL&&this.methods.push(N),a.Func.find({tags:[l.GP]}).forEach((t=>{const e=t.options.get(l.n3)??"",n=t.friendlyName??t.name,i=t.options.get(l.C0)??"",o=t.options.get(l._X)??"",r=t.options.get(l.Gi)??"";this.editorSettings.semtype&&!e.includes(this.editorSettings.semtype)||this.editorSettings.type&&!i.includes(this.editorSettings.type)||this.editorSettings.units&&!o.includes(this.editorSettings.units)||(this.supportedFunctions[n]={func:t,semTypes:e?e.split(","):[],types:i?i.split(","):[],units:o?o.split(","):[],distanceFunctions:r?r.split(","):[]})})),this.tableInput=s.input.table("Table",{value:r.shell.tv.dataFrame,items:r.shell.tables,onValueChanged:()=>{this.onTableInputChanged()}}),this.onTableInputChanged(),this.regenerateColInput(),this.onColumnInputChanged();let e=!1,n=!1;this.methodInput=s.input.choice("Method",{value:c.c.UMAP,items:this.methods,onValueChanged:t=>{e&&this.createAlgorithmSettingsDiv(this.methodSettingsDiv,this.methodsParams[t])}}),this.methodSettingsIcon=s.icons.settings((()=>{e=!e,e?this.createAlgorithmSettingsDiv(this.methodSettingsDiv,this.methodsParams[this.methodInput.value]):s.empty(this.methodSettingsDiv)}),"Modify methods parameters"),this.dbScanSettingsIcon=s.icons.settings((()=>{n=!n,n?this.createAlgorithmSettingsDiv(this.dbScanSettingsDiv,this.dbScanParams):s.empty(this.dbScanSettingsDiv)}),"Modify clustering parameters"),this.clusterEmbeddingsInput.classList.add("ml-dim-reduction-settings-input"),this.clusterEmbeddingsInput.root.prepend(this.dbScanSettingsIcon),this.methodInput.root.classList.add("ml-dim-reduction-settings-input"),this.methodInput.root.prepend(this.methodSettingsIcon),this.methodSettingsDiv=s.inputs([]);const i=this.columnFunctionsMap[this.colInput.value.name];this.preprocessingFunctionInput=s.input.choice("Encoding function",{value:i[0],items:i,onValueChanged:()=>{this.onPreprocessingFunctionChanged()}});let o=!1;this.preprocessingFunctionInputRoot||(this.preprocessingFunctionInputRoot=this.preprocessingFunctionInput.root,o=!0),o||(s.empty(this.preprocessingFunctionInputRoot),Array.from(this.preprocessingFunctionInput.root.children).forEach((t=>this.preprocessingFunctionInputRoot.append(t)))),this.preprocessingFunctionInputRoot.classList.add("ml-dim-reduction-settings-input");let h=!1;this.preprocessingFuncSettingsIcon=s.icons.settings((async()=>{h?s.empty(this.preprocessingFuncSettingsDiv):await this.createPreprocessingFuncParamsDiv(this.preprocessingFuncSettingsDiv,this.supportedFunctions[this.preprocessingFunctionInput.value].func),h=!h}),"Modify encoding function parameters"),this.preprocessingFunctionInputRoot.prepend(this.preprocessingFuncSettingsIcon),this.similarityMetricInput=s.input.choice("Similarity",{value:"",items:[]}),this.similarityMetricInput.nullable=!1,this.similarityMetricInputRoot||(this.similarityMetricInputRoot=this.similarityMetricInput.root),this.onPreprocessingFunctionChanged()}getColInput(){const t=this.tableInput.value?.columns.toList().find((t=>!!this.columnFunctionsMap[t.name]))??null,e=s.input.column("Column",{table:this.tableInput.value,value:t,onValueChanged:()=>this.onColumnInputChanged(),filter:t=>!!this.columnFunctionsMap[t.name]});return this.colInputRoot||(this.colInputRoot=e.root),e}regenerateColInput(){let t=!1;this.colInputRoot&&(t=!0,s.empty(this.colInputRoot)),this.colInput=this.getColInput(),t&&Array.from(this.colInput.root.children).forEach((t=>this.colInputRoot.append(t))),this.onColumnInputChanged()}onTableInputChanged(){const t=this.tableInput.value;t&&(this.columnFunctionsMap={},t.columns.toList().forEach((t=>{Object.keys(this.supportedFunctions).forEach((e=>{const n=this.supportedFunctions[e].semTypes,i=this.supportedFunctions[e].types,o=this.supportedFunctions[e].units,r=!n.length||t.semType&&n.includes(t.semType),s=!i.length||i.includes(t.type),a=!o.length||t.meta.units&&o.includes(t.meta.units);r&&s&&a&&(this.columnFunctionsMap[t.name]||(this.columnFunctionsMap[t.name]=[]),this.columnFunctionsMap[t.name].push(e))}))})),this.regenerateColInput())}onColumnInputChanged(){const t=this.colInput.value;if(!t)return;const e=this.columnFunctionsMap[t.name];this.preprocessingFunctionInput=s.input.choice("Preprocessing function",{value:e[0],items:e,onValueChanged:()=>{this.onPreprocessingFunctionChanged()}});let n=!1;this.preprocessingFunctionInputRoot||(this.preprocessingFunctionInputRoot=this.preprocessingFunctionInput.root,n=!0),n||(s.empty(this.preprocessingFunctionInputRoot),Array.from(this.preprocessingFunctionInput.root.children).forEach((t=>this.preprocessingFunctionInputRoot.append(t)))),this.onPreprocessingFunctionChanged()}onPreprocessingFunctionChanged(){s.empty(this.preprocessingFuncSettingsDiv),this.preprocessingFunctionSettings={};const t=this.preprocessingFunctionInput.value,e=this.supportedFunctions[t].distanceFunctions;this.availableMetrics=[...e],this.similarityMetricInput=s.input.choice("Similarity",{value:this.availableMetrics[0],items:this.availableMetrics}),this.similarityMetricInput.nullable=!1,this.similarityMetricInputRoot||(this.similarityMetricInputRoot=this.similarityMetricInput.root),s.empty(this.similarityMetricInputRoot),Array.from(this.similarityMetricInput.root.children).forEach((t=>this.similarityMetricInputRoot.append(t))),this.preprocessingFuncSettingsIcon&&(this.supportedFunctions[t].func.inputs.length<3?this.preprocessingFuncSettingsIcon.style.display="none":this.preprocessingFuncSettingsIcon.style.display="flex")}createAlgorithmSettingsDiv(t,e){return s.empty(t),Object.keys(e).forEach((n=>{const i=e[n],o="string"===i.type?s.input.string(i.uiName,{value:i.value??"",onValueChanged:t=>{i.value=t}}):"boolean"===i.type?s.input.bool(i.uiName,{value:i.value??!1,onValueChanged:t=>{i.value=t}}):s.input.float(i.uiName,{value:i.value,onValueChanged:t=>{i.value=t}});t.append(o.root),i.disable?(o.enabled=!1,s.tooltip.bind(o.input??o.root,i.disableTooltip??"")):s.tooltip.bind(o.input??o.root,i.tooltip)})),t}async createPreprocessingFuncParamsDiv(t,e){if(s.empty(t),e.inputs.length<3)return s.div();const n=e.prepare(),i=await n.buildEditor(s.div());for(let o=2;o<e.inputs.length;o++){const r=e.inputs[o];(this.preprocessingFunctionSettings[r.name]||n.inputParams[e.inputs[o].name].value||r.defaultValue)&&(this.preprocessingFunctionSettings[r.name]=this.preprocessingFunctionSettings[r.name]??n.inputParams[r.name].value??r.defaultValue);const s=i.find((t=>t.property.name===r.name));s&&(null!==this.preprocessingFunctionSettings[r.name]&&void 0!==this.preprocessingFunctionSettings[r.name]&&(s.value=this.preprocessingFunctionSettings[r.name]),s.onChanged.subscribe((t=>{this.preprocessingFunctionSettings[r.name]=t})),t.append(s.root))}return t}getEditor(){return s.div([this.tableInput,this.colInputRoot,this.preprocessingFunctionInputRoot,this.preprocessingFuncSettingsDiv,this.methodInput,this.methodSettingsDiv,this.similarityMetricInputRoot,this.plotEmbeddingsInput,this.clusterEmbeddingsInput,this.dbScanSettingsDiv],{style:{minWidth:"420px"},classes:"ui-form dim-reduction-dialog-form"})}getParams(){return{table:this.tableInput.value,col:this.colInput.value,methodName:this.methodInput.value,preprocessingFunction:this.supportedFunctions[this.preprocessingFunctionInput.value].func,similarityMetric:this.similarityMetricInput.value,plotEmbeddings:this.plotEmbeddingsInput.value,clusterEmbeddings:this.clusterEmbeddingsInput.value,options:{...this.algorithmOptions,...this.dbScanOptions,preprocessingFuncArgs:this.preprocessingFunctionSettings??{}}}}getInput(){return{table:this.tableInput.value.name,col:this.colInput.value.name,methodName:this.methodInput.value,preprocessingFunction:this.preprocessingFunctionInput.value,similarityMetric:this.similarityMetricInput.value,plotEmbeddings:this.plotEmbeddingsInput.value,clusterEmbeddings:this.clusterEmbeddingsInput.value,options:{...this.algorithmOptions,...this.dbScanOptions,preprocessingFuncArgs:this.preprocessingFunctionSettings??{}}}}getStringInput(){return JSON.stringify(this.getInput())}async applyStringInput(t){try{const e=JSON.parse(t);await this.applyInput(e)}catch(t){r.shell.error("Error applying input from history"),console.error(t)}}async applyInput(t){try{const e=this.tableInput.value?.col(t.col);if(!e)throw new Error("Column not found");this.colInput.value=e,this.preprocessingFunctionInput.value=t.preprocessingFunction,this.similarityMetricInput.value=t.similarityMetric,this.plotEmbeddingsInput.value=t.plotEmbeddings,this.clusterEmbeddingsInput.value=t.clusterEmbeddings;const n=this.methodsParams[this.methodInput.value];Object.keys(n).forEach((e=>{null!=t.options[e]&&(this.methodsParams[t.methodName][e].value=t.options[e])})),this.methodInput.value=t.methodName,this.preprocessingFunctionSettings=t.options.preprocessingFuncArgs,await this.createPreprocessingFuncParamsDiv(this.preprocessingFuncSettingsDiv,this.supportedFunctions[this.preprocessingFunctionInput.value].func)}catch(t){r.shell.error("Error applying input from history"),console.error(t)}}}var R=n(9713),k=n(6295);const O=t=>null==t;function H(t,e,n,i){if(n>t[t.length-1])return;const o=t.findIndex((t=>n<t));t.pop(),t.splice(o,0,n),e.pop(),e.splice(o,0,i)}class G{constructor(t=!0,e=!0){const i=navigator.hardwareConcurrency;this._workerCount=t?Math.max(i-2,1):1,this._workers=new Array(this._workerCount).fill(null).map((()=>new Worker(new URL(n.p+n.u(793),n.b)))),this._terminateOnComplete=e}async calc(t,e,n=!0,o){return await this.calcMulti([t],[e],n,[o??{}],[1],i.MANHATTAN)}async calcMulti(t,e,n=!0,o=[{}],r=[1],s=i.MANHATTAN){if(t.length<1)throw new Error("values must contain at least one array");if(e.length!==t.length||o.length!==t.length||r.length!==t.length)throw new Error("values, fnNames, weights and opts must have the same length");return new Promise((async(i,a)=>{try{const a=t[0].length,l=new Array(this._workerCount),c=a*(a-1)/2;this._workerCount=Math.min(this._workerCount,c);const h=c/this._workerCount,u=new Float32Array(c);let d=0,p=1,m=0,f=Number.MIN_VALUE;for(let n=0;n<this._workerCount;n++){const i=Math.floor(n*h),g=n===this._workerCount-1?c:Math.floor((n+1)*h),y=d,b=p;n!==this._workerCount-1&&(d=a-2-Math.floor(Math.sqrt(-8*g+4*a*(a-1)-7)/2-.5),p=g-a*d+Math.floor((d+1)*(d+2)/2)),this._workers[n].postMessage({values:t,fnNames:e,startRow:y,startCol:b,chunckSize:g-i,opts:o,weights:r,aggregationMethod:s}),l[n]=new Promise(((t,e)=>{this._workers[n].onmessage=({data:{error:o,distanceMatrixData:r,min:s,max:a}})=>{this._terminateOnComplete&&setTimeout((()=>this._workers[n].terminate())),o?e(o):(u.set(r,i),s<m&&(m=s),a>f&&(f=a),t())}}))}await Promise.all(l),n&&u.forEach(((t,e)=>{u[e]=(t-m)/(f-m)})),i(u)}catch(t){a(t)}}))}terminate(){this._workers.forEach((t=>t.terminate()))}}class F{constructor(){this._workerCount=Math.max(navigator.hardwareConcurrency-2,1)}static pruneSparseMatrix(t,e=1e6){const n=200,i=new Uint32Array(n),o=t.distance.length,r=t.distance;for(let t=0;t<o;t++)i[Math.floor(r[t]*n)]++;let s=0,a=0;for(let t=0;t<n&&(s+=i[t],a=t,!(s>=e));t++);const l=new Uint32Array(s),c=new Uint32Array(s),h=new Float32Array(s),u=t.i,d=t.j;let p=0;const m=(a+1)/n;for(let t=0;t<o;t++)r[t]<m&&(l[p]=u[t],c[p]=d[t],h[p]=r[t],p++);return{i:l,j:c,distance:h}}async calcMultiColumn(t,e,o,r=[{}],s=[1],a=i.EUCLIDEAN){const l=t[0].length*(t[0].length-1)/2,c=Math.floor(l/this._workerCount),h=t[0].length>2e4?await this.getMinimalThreshold(t,e,r,s,a):0;o<h&&(console.log(`using threshold ${h}`),o=h),r.forEach(((t,e)=>r[e].threshold=o));const u=new Array(this._workerCount),d=new Array(this._workerCount).fill(null).map((()=>new Worker(new URL(n.p+n.u(111),n.b))));for(let n=0;n<this._workerCount;n++)u[n]=new Promise(((i,h)=>{const u=n*c,p=n===this._workerCount-1?l:(n+1)*c;p<=u&&i({i:new Int32Array(0),j:new Int32Array(0),distance:new Float32Array(0),idx:n}),d[n].postMessage({values:t,startIdx:u,endIdx:p,threshold:o,fnNames:e,opts:r,weights:s,aggregationMethod:a}),d[n].onmessage=({data:{error:t,i:e,j:o,distance:r}})=>{t?(d[n].terminate(),h(t)):(d[n].terminate(),i({i:e,j:o,distance:r,idx:n}))}}));const p=await Promise.all(u),m=p.reduce(((t,e)=>t+e.i.length),0),f=new Int32Array(m),g=new Int32Array(m),y=new Float32Array(m);let b=0;for(const t of p)f.set(t.i,b),g.set(t.j,b),y.set(t.distance,b),b+=t.i.length;return{i:f,j:g,distance:y}}async calc(t,e,n,i={}){return await this.calcMultiColumn([t],[e],n,[i],[1])}async getKNN(t,e,n=15,i={}){return await this.multiColumnKNN([t],[e],n,[i],[1])}async getThresholdKNN(t,e,n=.8,i={}){return await this.multiColumnThresholdKnn([t],[e],n,[i],[1])}async multiColumnThresholdKnn(t,e,o=.8,r,s,a=i.EUCLIDEAN){if(t.length!==e.length||t.length!==r.length||t.length!==s.length)throw new Error("values, distance functions, options and weights arrays should have the same length");if(t.some((e=>e.length!==t[0].length)))throw new Error("all values arrays should have the same length");const l=t[0].length*(t[0].length-1)/2,c=Math.floor(l/this._workerCount),h=new Array(this._workerCount),u=new Array(this._workerCount).fill(null).map((()=>new Worker(new URL(n.p+n.u(603),n.b))));for(let n=0;n<this._workerCount;n++)h[n]=new Promise(((i,h)=>{const d=n*c,p=n===this._workerCount-1?l:(n+1)*c;p<=d&&i({knnDistances:new Array(0),knnIndexes:new Array(0)}),u[n].postMessage({values:t,startIdx:d,endIdx:p,fnNames:e,opts:r,threshold:o,weights:s,aggregationMethod:a}),u[n].onmessage=({data:{error:t,knnDistances:e,knnIndexes:o}})=>{t?(u[n].terminate(),h(t)):(u[n].terminate(),i({knnDistances:e,knnIndexes:o}))}}));const d=await Promise.all(h),p=new Int32Array(t[0].length);for(const e of d)for(let n=0;n<t[0].length;++n)p[n]+=e.knnIndexes[n]?.length??0;const m={knnDistances:new Array(t[0].length).fill(null).map(((t,e)=>new Array(p[e]))),knnIndexes:new Array(t[0].length).fill(null).map(((t,e)=>new Array(p[e])))};for(const e of d)for(let n=0;n<t[0].length;++n)for(let t=0;t<(e.knnDistances[n]?.length??0);++t)m.knnDistances[n][p[n]-1]=e.knnDistances[n][t],m.knnIndexes[n][p[n]-1]=e.knnIndexes[n][t],p[n]-=1;return m}async multiColumnSingleValueKNN(t,e,o,r=15,s,a,l=i.EUCLIDEAN){if(t.length!==o.length||t.length!==s.length||t.length!==a.length)throw new Error("values, distance functions, options and weights arrays should have the same length");if(t.some((e=>e.length!==t[0].length)))throw new Error("all values arrays should have the same length");const c=new Array(this._workerCount).fill(null).map((()=>new Worker(new URL(n.p+n.u(810),n.b)))),h=new Array(this._workerCount),u=t[0].length,d=t.map((t=>t[e])),p=Math.ceil(u/this._workerCount);for(let e=0;e<this._workerCount;e++)h[e]=new Promise(((n,i)=>{const h=e*p,m=e===this._workerCount-1?u:(e+1)*p;m<=h&&n({knnDistances:new Array(0),knnIndexes:new Array(0)}),c[e].postMessage({values:t.map((t=>t.slice(h,m))),target:d,fnNames:o,opts:s,nNeighbours:r,weights:a,aggregationMethod:l,startIdx:h}),c[e].onmessage=({data:{error:t,knnDistances:o,knnIndexes:r}})=>{t?(c[e].terminate(),i(t)):(c[e].terminate(),n({knnDistances:o,knnIndexes:r}))}}));const m=await Promise.all(h),f={knnDistances:new Array(r).fill(99999),knnIndexes:new Array(r).fill(-1)};for(const t of m)for(let e=0;e<(t.knnDistances?.length??0);++e)H(f.knnDistances,f.knnIndexes,t.knnDistances[e],t.knnIndexes[e]);return f}async multiColumnKNN(t,e,o=15,r,s,a=i.EUCLIDEAN){if(t.length!==e.length||t.length!==r.length||t.length!==s.length)throw new Error("values, distance functions, options and weights arrays should have the same length");if(t.some((e=>e.length!==t[0].length)))throw new Error("all values arrays should have the same length");const l=t[0].length*(t[0].length-1)/2,c=Math.floor(l/this._workerCount),h=new Array(this._workerCount),u=new Array(this._workerCount).fill(null).map((()=>new Worker(new URL(n.p+n.u(950),n.b))));for(let n=0;n<this._workerCount;n++)h[n]=new Promise(((i,h)=>{const d=n*c,p=n===this._workerCount-1?l:(n+1)*c;p<=d&&i({knnDistances:new Array(0),knnIndexes:new Array(0)}),u[n].postMessage({values:t,startIdx:d,endIdx:p,fnNames:e,opts:r,nNeighbours:o,weights:s,aggregationMethod:a}),u[n].onmessage=({data:{error:t,knnDistances:e,knnIndexes:o}})=>{t?(u[n].terminate(),h(t)):(u[n].terminate(),i({knnDistances:e,knnIndexes:o}))}}));const d=await Promise.all(h),p={knnDistances:new Array(t[0].length).fill(null).map((()=>new Array(o).fill(99999))),knnIndexes:new Array(t[0].length).fill(null).map((()=>new Array(o).fill(-1)))};for(const e of d)for(let n=0;n<t[0].length;++n)for(let t=0;t<(e.knnDistances[n]?.length??0);++t)H(p.knnDistances[n],p.knnIndexes[n],e.knnDistances[n][t],e.knnIndexes[n][t]);return p}async getSampleDistances(t,e,o=[],r,s=i.EUCLIDEAN){const a=new Array(this._workerCount).fill(null).map((()=>new Worker(new URL(n.p+n.u(778),n.b))));try{const n=t[0].length*(t[0].length-1)/2,i=Math.floor(n/this._workerCount),l=1e6,c=Math.max(Math.min(n/1e3,l),Math.min(n,l)),h=Math.floor(c/this._workerCount),u=new Array(this._workerCount);for(let l=0;l<this._workerCount;l++)u[l]=new Promise(((c,u)=>{const d=l*i,p=l===this._workerCount-1?n:(l+1)*i;a[l].postMessage({values:t,startIdx:d,endIdx:p,sampleLength:h,fnNames:e,opts:o,weights:r,aggregationMethod:s}),a[l].onmessage=({data:{error:t,distance:e}})=>{a[l].terminate(),t?u(t):c({distance:e})}}));const d=await Promise.all(u),p=d.reduce(((t,e)=>t+e.distance.length),0),m=new Float32Array(p);let f=0;for(const t of d)m.set(t.distance,f),f+=t.distance.length;return m.sort(),m}catch(t){return a?.forEach((t=>t?.terminate())),console.error(t),new Float32Array(1).fill(.5)}}async getMinimalThreshold(t,e,n=[],o,r=i.EUCLIDEAN){try{const i=t.length*(t.length-1)/2,s=await this.getSampleDistances(t,e,n,o,r);return 1-s[Math.floor(7e7/i*s.length)]}catch(t){return console.error(t),.5}}static calcSync(t,e,n,i){const o=[],r=[],s=[];let a=0,l=0,c=0;const h=t.length*(t.length-1)/2;for(;a<h;){const e=O(t[l])||O(t[c])?1:n(t[l],t[c]);1-e>=i&&(o.push(l),r.push(c),s.push(e)),a++,c++,c===t.length&&(l++,c=l+1)}return{i:new Int32Array(o),j:new Int32Array(r),distance:new Float32Array(s)}}}var D,B,V=n(8774);(B=D||(D={})).none="none",B.bold="bold",B.dashed="dashed";class W{get currentLineId(){return this._currentLineIdx}set currentLineId(t){t!==this._currentLineIdx&&(this._currentLineIdx=t,this.sp.render(this.ctx))}set linesToRender(t){this.updateLines(t),this.sp.render(this.ctx)}set linesVisibility(t){this.visibility=t,this.sp.render(this.ctx)}constructor(t,e,n,i,o=D.none){var r;this._currentLineIdx=-1,this.lineClicked=new h.Subject,this.lineHover=new h.Subject,this.mouseOverLineId=-1,this.arrowWidth=15,this.sp=t,this.xAxisCol=this.sp.dataFrame.columns.byName(e),this.yAxisCol=this.sp.dataFrame.columns.byName(n),this.canvas=this.sp.getInfo().canvas,this.ctx=this.canvas.getContext("2d"),this.currentLineStyle=o,this.updateLines(i),this.visibility=null!==(r=i.visibility)&&void 0!==r?r:new V.A(this.lines.from.length),i.visibility||this.visibility.setAll(!0,!1),i.arrowSize&&(this.arrowWidth=i.arrowSize),this.canvas.onmousedown=t=>{var e;(null===(e=this.lines)||void 0===e?void 0:e.skipMouseOverDetection)&&(this.mouseOverLineId=this.checkCoordsOnLine(t.offsetX,t.offsetY)),-1!==this.mouseOverLineId&&this.lineClicked.next({x:t.clientX,y:t.clientY,id:this.mouseOverLineId,event:t})},this.canvas.onmousemove=t=>{var e;this.mouseOverLineId=(null===(e=this.lines)||void 0===e?void 0:e.skipMouseOverDetection)?-1:this.checkCoordsOnLine(t.offsetX,t.offsetY),-1!==this.mouseOverLineId&&this.lineHover.next({x:t.clientX,y:t.clientY,id:this.mouseOverLineId,event:t})},t.onEvent("d4-before-draw-scene").subscribe((t=>{this.renderLines()}))}updateLines(t){this.lines=t,this.multipleLinesCounts=new Uint8Array(this.lines.from.length),t.skipMultiLineCalculation?this.multipleLinesCounts.fill(0):this.createMultiLinesIndices()}renderLines(){var t,e,n,i,o,r,s,a,l,c,h,u,d,p,m,f,g;const y=this.lines.colors||this.lines.widths||this.lines.opacities||this.lines.drawArrowsArr;y||(this.ctx.lineWidth=null!==(t=this.lines.width)&&void 0!==t?t:1,this.ctx.strokeStyle=`rgba(${null!==(e=this.lines.color)&&void 0!==e?e:"0,128,0"},${null!==(n=this.lines.opacity)&&void 0!==n?n:1})`);const b=this.sp.dataFrame.filter,v=Math.pow(null!==(i=this.lines.shortLineThreshold)&&void 0!==i?i:5,2);for(let t=0;t<this.lines.from.length;t++)if(b.get(this.lines.from[t])&&b.get(this.lines.to[t])&&this.visibility.getBit(t)){let e=0;const n=this.sp.getMarkerSize(this.lines.from[t])/2,i=this.sp.getMarkerSize(this.lines.to[t])/2,b=this.sp.pointToScreen(this.lines.from[t]);let w=null==b?void 0:b.x,C=null==b?void 0:b.y;const A=this.sp.pointToScreen(this.lines.to[t]);let S=null==A?void 0:A.x,x=null==A?void 0:A.y;const E=Math.min(this.sp.viewBox.width,this.sp.viewBox.height);if(this.ctx.beginPath(),w&&C&&S&&x&&Math.hypot(S-w,x-C)/E>.01){if(y){const e=(null===(o=this.lines.colors)||void 0===o?void 0:o[t])?null===(r=this.lines.colors)||void 0===r?void 0:r[t]:null!==(s=this.lines.color)&&void 0!==s?s:"0,128,0",n=(null===(a=this.lines.opacities)||void 0===a?void 0:a[t])?null===(l=this.lines.opacities)||void 0===l?void 0:l[t]:null!==(c=this.lines.opacity)&&void 0!==c?c:1;this.ctx.strokeStyle=`rgba(${e},${n})`,this.ctx.lineWidth=(null===(h=this.lines.widths)||void 0===h?void 0:h[t])?null===(u=this.lines.widths)||void 0===u?void 0:u[t]:null!==(d=this.lines.width)&&void 0!==d?d:1}t===this._currentLineIdx&&this.toggleCurrentLineStyle(!0);const b=this.multipleLinesCounts[t];let A=null;if(b){e=this.getLineLength(w,C,S,x);const o=this.getPointOnDistance(w,C,S,x,i,e),r=this.getPointOnDistance(S,x,w,C,n,e);w=o.x,C=o.y,S=r.x,x=r.y,A=this.lines.from[t]>this.lines.to[t]?this.findControlPoint(b,w,C,S,x,t):this.findControlPoint(b,S,x,w,C,t),this.ctx.moveTo(w,C),this.ctx.quadraticCurveTo(A.x,A.y,S,x)}else(!this.lines.skipShortLines||Math.pow(S-w,2)+Math.pow(x-C,2)>v)&&(this.ctx.moveTo(w,C),this.ctx.lineTo(S,x));if((null!==(p=this.lines.drawArrows)&&void 0!==p?p:null===(m=this.lines.drawArrowsArr)||void 0===m?void 0:m.getBit(t))&&(e||(e=this.getLineLength(w,C,S,x)),e>this.arrowWidth)){const t=b?null:this.getPointOnDistance(w,C,S,x,i,e),n=b?A.x:w,o=b?A.y:C;this.canvasArrow(this.ctx,null!==(f=null==t?void 0:t.x)&&void 0!==f?f:w,null!==(g=null==t?void 0:t.y)&&void 0!==g?g:C,n,o)}this.ctx.stroke(),this.ctx.closePath(),t===this._currentLineIdx&&this.toggleCurrentLineStyle(!1)}}this.fillLeftBottomRect()}toggleCurrentLineStyle(t){switch(this.currentLineStyle){case D.bold:t?this.ctx.lineWidth+=2:this.ctx.lineWidth-=2;break;case D.dashed:t?this.ctx.setLineDash([5,5]):this.ctx.setLineDash([]);break;default:return}}fillLeftBottomRect(){const t=new Path2D;t.rect(this.sp.yAxisBox.minX,this.sp.yAxisBox.maxY,this.sp.yAxisBox.width,this.sp.xAxisBox.height),this.ctx.fillStyle="white",this.ctx.beginPath(),this.ctx.fill(t),this.ctx.closePath()}createMultiLinesIndices(){const t={};for(let e=0;e<this.lines.from.length;e++){let n=0,i=0;this.lines.from[e]<this.lines.to[e]?(n=this.lines.from[e],i=this.lines.to[e]):(n=this.lines.to[e],i=this.lines.from[e]),t[`${n}|${i}`]?(1===t[`${n}|${i}`].length&&(this.multipleLinesCounts[t[`${n}|${i}`][0]]=1,t[`${n}|${i}`].push(1)),this.multipleLinesCounts[e]=++t[`${n}|${i}`][1]):t[`${n}|${i}`]=[e]}}checkCoordsOnLine(t,e){let n=-1,i=null,o=null;const r=this.sp.dataFrame.filter;for(let s=0;s<this.lines.from.length;s++)if(r.get(this.lines.from[s])&&r.get(this.lines.to[s])&&this.visibility.getBit(s)){const r=this.sp.getMarkerSize(this.lines.from[s])/2,a=this.sp.getMarkerSize(this.lines.to[s])/2,l=this.sp.worldToScreen(this.xAxisCol.get(this.lines.from[s]),this.yAxisCol.get(this.lines.from[s])),c=this.sp.worldToScreen(this.xAxisCol.get(this.lines.to[s]),this.yAxisCol.get(this.lines.to[s]));if(this.multipleLinesCounts[s]){const n=this.getLineLength(l.x,l.y,c.x,c.y),i=this.getPointOnDistance(l.x,l.y,c.x,c.y,a,n),h=this.getPointOnDistance(c.x,c.y,null==l?void 0:l.x,null==l?void 0:l.y,r,n),u=this.lines.from[s]>this.lines.to[s]?this.findControlPoint(this.multipleLinesCounts[s],i.x,i.y,h.x,h.y,s):this.findControlPoint(this.multipleLinesCounts[s],h.x,h.y,i.x,i.y,s);o=this.calculateDistToCurveLine(s,t,e,i,h,u)}else o=this.calculateDistToStraightLine(t,e,l,c);(!i&&null!==o&&o<5||i&&null!==o&&o<i)&&(i=o,n=s)}return n}calculateDistToStraightLine(t,e,n,i){const o=Math.min(n.x,i.x),r=Math.max(n.x,i.x),s=Math.min(n.y,i.y),a=Math.max(n.y,i.y);return t>=o-2&&t<=r+2&&e>=s-2&&e<=a+2?this.distToStraightLineSegment(t,e,n,i):null}distToStraightLineSegment(t,e,n,i){const o=(t,e,n,i)=>Math.pow(t-n,2)+Math.pow(e-i,2),r=o(n.x,n.y,i.x,i.y);if(0==r)return o(t,e,n.x,n.y);let s=((t-n.x)*(i.x-n.x)+(e-n.y)*(i.y-n.y))/r;return s=Math.max(0,Math.min(1,s)),o(t,e,n.x+s*(i.x-n.x),n.y+s*(i.y-n.y))}calculateDistToCurveLine(t,e,n,i,o,r){const s=Math.min(i.x,o.x,r.x),a=Math.max(i.x,o.x,r.x),l=Math.min(i.y,o.y,r.y),c=Math.max(i.y,o.y,r.y);if(e>=s-2&&e<=a+2&&n>=l-2&&n<=c+2){const t=a-s,h=c-l;return this.calculateDistToCurveInRect(e,n,i,r,o,t,h)}return null}calculateDistToCurveInRect(t,e,n,i,o,r,s){const a=Math.floor((r+s)/3),l=1/a,c=new Uint32Array(a),h=new Uint32Array(a),u=new Uint32Array(a);let d=null;const p=new V.A(a);for(let r=0;r<c.length;r++){const s=r*l,a=Math.pow(1-s,2)*n.x+2*s*(1-s)*i.x+Math.pow(s,2)*o.x,p=Math.pow(1-s,2)*n.y+2*s*(1-s)*i.y+Math.pow(s,2)*o.y,m=Math.abs(t-a),f=Math.abs(e-p),g=m+f;(!d||d>g)&&(d=g),u[r]=Math.max(m,f),c[r]=a,h[r]=p}for(let t=0;t<c.length;t++)u[t]<d&&p.setBit(t,!0,!1);let m=null;for(let n=-1;-1!==(n=p.findNext(n));){const i=Math.hypot(c[n]-t,h[n]-e);(!m||m>i)&&(m=i)}return m}getLineLength(t,e,n,i){return Math.sqrt(Math.pow(n-t,2)+Math.pow(i-e,2))}getPointOnDistance(t,e,n,i,o,r){const s=n-o*((n-t)/r),l=i-o*((i-e)/r);return new a.Point(s,l)}findControlPoint(t,e,n,i,o,r){const s=e+(i-e)/2,l=n+(o-n)/2;let c=s-e,h=l-n;const u=Math.sqrt(c*c+h*h);c/=u,h/=u;const d=50*Math.ceil(t/2);return t%2==0?new a.Point(s+d/2*h,l-d/2*c):new a.Point(s-d/2*h,l+d/2*c)}canvasArrow(t,e,n,i,o){const r=Math.atan2(i-e,o-n)+Math.PI;t.moveTo(e-this.arrowWidth*Math.sin(r-Math.PI/10),n-this.arrowWidth*Math.cos(r-Math.PI/10)),t.lineTo(e,n),t.lineTo(e-this.arrowWidth*Math.sin(r+Math.PI/10),n-this.arrowWidth*Math.cos(r+Math.PI/10))}}var U,j,q=n(8060),z=n(3629);async function Y(t,e,i,o,s,a,l){let c=await async function(t,e,i,o,s,a,l){if(!a.distanceFnArgs)throw new Error("options.distanceFnArgs must be defined");if(t.length!==e.length||t.length!==a.distanceFnArgs.length||t.length!==o.length)throw new Error("data, metrics and options and weights must have the same length");return new Promise((function(c,h){const u=new Worker(new URL(n.p+n.u(234),n.b));u.postMessage({columnsData:t,distanceMetrics:e,method:i,options:a,weights:o,aggregationMethod:s});const d=r.events.onCustomEvent(q.S).subscribe((()=>{try{u?.terminate()}finally{d.unsubscribe()}}));u.onmessage=({data:{error:t,embedding:e,epochNum:n,epochsLength:i}})=>{O(n)||O(i)?(d.unsubscribe(),t?h(t):c(e),setTimeout((()=>u.terminate()),100)):l&&l(n,i,e)}}))}(t,i,e,o,s,a,l);return c=c.map((t=>(0,z.S8)(t))),c}(j=U||(U={})).EUCLIDEAN="EUCLIDEAN",j.MANHATTAN="MANHATTAN";const K={[U.EUCLIDEAN]:function(t){return`\n var sum = 0.0;\n for (var i = 0u; i < ${t}; i = i + 1u) {\n sum = sum + distances[i] * distances[i] * computeInfo.weights[i] * computeInfo.weights[i];\n }\n return sqrt(sum);\n `},[U.MANHATTAN]:function(t){return`\n var sum = 0.0;\n for (var i = 0u; i < ${t}; i = i + 1u) {\n sum = sum + abs(distances[i]) * computeInfo.weights[i];\n }\n return sum;\n `}};var Z,X;(X=Z||(Z={})).HAMMING="Hamming",X.EUCLIDEAN="Euclidean",X.VECTOR_COSINE="Vector Cosine",X.MANHATTAN="Manhattan",X.TANIMOTO="Tanimoto",X.LEVENSTEIN="Levenshtein",X.NEEDLEMAN_WUNSCH="Needlemann-Wunsch",X.MONOMER_CHEMICAL_DISTANCE="Monomer chemical distance",X.SOKAL="Sokal",X.COSINE="Cosine",X.ASYMMETRIC="Asymmetric",X.Difference="Difference",X.OneHot="One-Hot";const J={[Z.HAMMING]:function(t,e){return`\n let aLength: u32 = computeInfo.entrySizes[${e}][aIndex];\n let bLength: u32 = computeInfo.entrySizes[${e}][bIndex];\n let maxLength: u32 = max(aLength, bLength);\n let minLength: u32 = min(aLength, bLength);\n let sizeDiff: u32 = maxLength - minLength;\n \n let maxIntDistance = ceil(maxDistance * f32(maxLength)) - f32(sizeDiff);\n\n var diff: f32 = 0.0;\n for (var i = 0u; i < ${t}; i = i + 1u) {\n diff = diff + f32(a[i] != b[i]);\n if (diff > maxIntDistance) {\n return 1.0;\n }\n }\n diff += f32(sizeDiff);\n return diff / ${t};\n `},[Z.EUCLIDEAN]:function(t,e){return`\n var dist: f32 = 0.0;\n for (var i = 0u; i < ${t}; i = i + 1u) {\n dist = dist + f32(a[i] - b[i]) * f32(a[i] - b[i]);\n }\n return sqrt(dist);\n `},[Z.MANHATTAN]:function(t,e){return`\n var dist: f32 = 0.0;\n for (var i = 0u; i < ${t}; i = i + 1u) {\n dist = dist + abs(f32(a[i] - b[i]));\n }\n return dist;\n `},[Z.VECTOR_COSINE]:function(t,e){return`\n var dist: f32 = 0.0;\n var productSum: f32 = 0.0;\n var aSquareSum: f32 = 0.0;\n var bSquareSum: f32 = 0.0;\n for (var i = 0u; i < ${t}; i = i + 1u) {\n productSum = productSum + f32(a[i] * b[i]);\n aSquareSum = aSquareSum + f32(a[i] * a[i]);\n bSquareSum = bSquareSum + f32(b[i] * b[i]);\n }\n var sim = productSum / (sqrt(aSquareSum) * sqrt(bSquareSum));\n return (1.0 - sim) / 2.0;\n `},[Z.TANIMOTO]:function(t,e){return`\n var onBitsa: u32 = 0u;\n var onBitsb: u32 = 0u;\n for (var i = 0u; i < ${t}u; i = i + 1u) {\n onBitsa = onBitsa + countOneBits(a[i]);\n onBitsb = onBitsb + countOneBits(b[i]);\n }\n\n if (onBitsa == 0u && onBitsb == 0u) {\n return 0.0;\n }\n\n let totalOnBits = onBitsa + onBitsb;\n var commonBits: u32 = 0u;\n for (var i = 0u; i < ${t}u; i = i + 1u) {\n commonBits = commonBits + countOneBits(a[i] & b[i]);\n }\n\n return 1.0 - f32(commonBits) / f32(totalOnBits - commonBits);\n `},[Z.LEVENSTEIN]:function(t,e){return`\n let aLength: u32 = computeInfo.entrySizes[${e}][aIndex];\n let bLength: u32 = computeInfo.entrySizes[${e}][bIndex];\n let maxLength: u32 = max(aLength, bLength);\n let minLength: u32 = min(aLength, bLength);\n\n let maxIntDistance = ceil(maxDistance * f32(maxLength));\n\n // we will store two arrays as matrix and swap the working indices per pass.\n // this way we can reduce memory usage per computation to just O(aLength)\n // the grid will have aLength + 1 columns and bLength + 1 rows\n // this will be guaranteed by iteration, but the array sizes must be known at compile time, so we will use a fixed size of maxArraySize\n var dynamicPassMat: array<array<f32, ${t+1}u>, 2>; // initialize to 0\n \n var prevIndex: u32 = 0;\n var curIndex: u32 = 1; // we will swap these indices per pass\n\n // initialize the first row\n for (var i = 0u; i <= aLength; i = i + 1u) {\n dynamicPassMat[prevIndex][i] = f32(i);\n }\n\n // iterate over the rows\n for (var i = 1u; i <= bLength; i = i + 1u) {\n dynamicPassMat[curIndex][0] = f32(i);\n var minEntry: f32 = f32(maxLength);\n let prevRow = &dynamicPassMat[prevIndex];\n let curRow = &dynamicPassMat[curIndex];\n let bMon = u32(b[i - 1]);\n for (var j = 1u; j <= aLength; j = j + 1u) {\n var cost: f32 = f32(a[j - 1] != bMon);\n var res: f32 = min(\n min(\n (*prevRow)[j] + 1.0, // deletion\n (*curRow)[j - 1] + 1.0, // insertion\n ),\n (*prevRow)[j - 1] + cost // substitution\n );\n (*curRow)[j] = res;\n if (res < minEntry) {\n minEntry = res;\n }\n }\n // swap the indices\n let temp: u32 = prevIndex;\n prevIndex = curIndex;\n curIndex = temp;\n if (minEntry > maxIntDistance) {\n return 1.0;\n }\n }\n\n return dynamicPassMat[prevIndex][aLength] / f32(maxLength);\n `},[Z.NEEDLEMAN_WUNSCH]:function(t,e){return`\n let aLength: u32 = computeInfo.entrySizes[${e}][aIndex];\n let bLength: u32 = computeInfo.entrySizes[${e}][bIndex];\n let maxLength: u32 = max(aLength, bLength);\n let minLength: u32 = min(aLength, bLength);\n \n let maxIntDistance = ceil(maxDistance * f32(maxLength));\n // we will store two arrays as matrix and swap the working indices per pass.\n // this way we can reduce memory usage per computation to just O(aLength)\n // the grid will have aLength + 1 columns and bLength + 1 rows\n // this will be guaranteed by iteration, but the array sizes must be known at compile time, so we will use a fixed size of maxArraySize\n var dynamicPassMat: array<array<f32, ${t+1}u>, 2>; // initialize to 0\n \n // we need to keep track of which operation led to the current cell\n // i.e. whether we came from the left, top or diagonal to assign gap open/gap extend penalty\n var verticalGaps: array<u32, ${t+1}u>;\n var horizontalGaps: array<u32, ${t+1}u>;\n\n let gapOpenPenalty: f32 = suppInfo.gapOpenPenalty${e};\n let gapExtensionPenalty: f32 = suppInfo.gapExtensionPenalty${e};\n var prevIndex: u32 = 0;\n var curIndex: u32 = 1; // we will swap these indices per pass\n // initialize the first row\n for (var i = 0u; i <= aLength; i = i + 1u) {\n dynamicPassMat[prevIndex][i] = gapExtensionPenalty + f32(i - 1) * gapExtensionPenalty; // accounting for the fact that left and right gaps are less costly\n dynamicPassMat[curIndex][i] = 0.0;\n }\n dynamicPassMat[0][0] = 0.0;\n\n let simMatrix = &suppInfo.similarityMatrix${e}; // using pointers make things faster\n // iterate over the rows\n for (var i = 1u; i <= bLength; i = i + 1u) {\n let prevRow = &dynamicPassMat[prevIndex];\n let curRow = &dynamicPassMat[curIndex];\n (*curRow)[0] = gapExtensionPenalty + f32(i - 1) * gapExtensionPenalty;\n var minEntry: f32 = f32(maxLength);\n let monB = u32(b[i - 1]);\n for (var j = 1u; j <= aLength; j = j + 1u) {\n let monA = u32(a[j - 1]);\n \n let cost: f32 = (*prevRow)[j - 1] + 1f - (*simMatrix)[monA][monB];\n var top = (*prevRow)[j]; // deletion\n if (verticalGaps[j] > 0 || i == 1 || i == bLength) {\n top = top + gapExtensionPenalty;\n } else {\n top = top + gapOpenPenalty;\n }\n var left = (*curRow)[j - 1]; // insertion\n if (horizontalGaps[j - 1] > 0 || j == 1 || j == aLength) {\n left = left + gapExtensionPenalty;\n } else {\n left = left + gapOpenPenalty;\n }\n var res: f32 = min(\n min(\n top, // deletion\n left, // insertion\n ),\n cost // substitution\n );\n (*curRow)[j] = res;\n if (res < minEntry) {\n minEntry = res;\n }\n // update the horizontal and vertical gaps\n if (res == cost) {\n verticalGaps[j] = 0;\n horizontalGaps[j] = 0;\n } else if (res == left) {\n verticalGaps[j] = 0;\n horizontalGaps[j] = 1;\n } else {\n verticalGaps[j] = 1;\n horizontalGaps[j] = 0;\n }\n }\n // swap the indices\n let temp: u32 = prevIndex;\n prevIndex = curIndex;\n curIndex = temp;\n if (minEntry > maxIntDistance) {\n return 1.0;\n }\n }\n return dynamicPassMat[prevIndex][aLength] / f32(minLength);\n\n `},[Z.MONOMER_CHEMICAL_DISTANCE]:function(t,e){return`\n let aLength: u32 = computeInfo.entrySizes[${e}][aIndex];\n let bLength: u32 = computeInfo.entrySizes[${e}][bIndex];\n let maxLength: u32 = max(aLength, bLength);\n let minLength: u32 = min(aLength, bLength);\n let sizeDiff: u32 = maxLength - minLength;\n \n let maxIntDistance = ceil(maxDistance * f32(maxLength)) - f32(sizeDiff);\n\n let simMatrix = &(suppInfo.similarityMatrix${e}); // using pointers make things faster\n var diff: f32 = 0.0;\n for (var i = 0u; i < ${t}; i = i + 1u) {\n diff = diff + 1.0 - (*simMatrix)[u32(a[i])][u32(b[i])];\n if (diff > maxIntDistance) {\n return 1.0;\n }\n }\n diff += f32(sizeDiff);\n return diff / ${t};\n `},[Z.SOKAL]:function(t,e){return`\n var onBitsa: u32 = 0u;\n var onBitsb: u32 = 0u;\n for (var i = 0u; i < ${t}u; i = i + 1u) {\n onBitsa = onBitsa + countOneBits(a[i]);\n onBitsb = onBitsb + countOneBits(b[i]);\n }\n let total = onBitsa + onBitsb;\n if (total == 0u) {\n return 1.0;\n }\n var commonBits: u32 = 0u;\n for (var i = 0u; i < ${t}u; i = i + 1u) {\n commonBits = commonBits + countOneBits(a[i] & b[i]);\n }\n return 1.0 - f32(commonBits) / f32(total * 2 - commonBits * 3);\n `},[Z.COSINE]:function(t,e){return`\n var onBitsa: u32 = 0u;\n var onBitsb: u32 = 0u;\n for (var i = 0u; i < ${t}u; i = i + 1u) {\n onBitsa = onBitsa + countOneBits(a[i]);\n onBitsb = onBitsb + countOneBits(b[i]);\n }\n let total = onBitsa * onBitsb; // p.s. here total is taken by multiplying\n if (total == 0u) {\n return 1.0;\n }\n var commonBits: u32 = 0u;\n for (var i = 0u; i < ${t}u; i = i + 1u) {\n commonBits = commonBits + countOneBits(a[i] & b[i]);\n }\n return 1.0 - f32(commonBits) / sqrt(f32(total));\n `},[Z.ASYMMETRIC]:function(t,e){return`\n var onBitsa: u32 = 0u;\n var onBitsb: u32 = 0u;\n for (var i = 0u; i < ${t}u; i = i + 1u) {\n onBitsa = onBitsa + countOneBits(a[i]);\n onBitsb = onBitsb + countOneBits(b[i]);\n }\n let min = min(onBitsa, onBitsb);\n if (min == 0u) {\n return 1.0;\n }\n var commonBits: u32 = 0u;\n for (var i = 0u; i < ${t}u; i = i + 1u) {\n commonBits = commonBits + countOneBits(a[i] & b[i]);\n }\n return 1.0 - f32(commonBits) / f32(min);\n `},[Z.Difference]:function(t,e){return`\n let range = suppInfo.range${e};\n return f32(abs(f32(a[0]) - f32(b[0])) / range);\n `},[Z.OneHot]:function(t,e){return`\n let aLength: u32 = computeInfo.entrySizes[${e}][aIndex];\n let bLength: u32 = computeInfo.entrySizes[${e}][bIndex];\n if (aLength != bLength) {\n return 1.0;\n }\n for (var i = 0u; i < aLength; i = i + 1u) {\n if(a[i] != b[i]) {\n return 1.0;\n }\n }\n return 0.0;\n `}},Q={[Z.HAMMING]:t=>Math.ceil(t/30),[Z.EUCLIDEAN]:t=>Math.ceil(t/30),[Z.MANHATTAN]:t=>Math.ceil(t/30),[Z.TANIMOTO]:t=>Math.ceil(t/30),[Z.SOKAL]:t=>Math.ceil(t/30),[Z.COSINE]:t=>Math.ceil(t/30),[Z.ASYMMETRIC]:t=>Math.ceil(t/30),[Z.LEVENSTEIN]:t=>Math.ceil(t*t/60),[Z.NEEDLEMAN_WUNSCH]:t=>Math.ceil(t*t/60),[Z.MONOMER_CHEMICAL_DISTANCE]:t=>Math.ceil(t/25),[Z.Difference]:t=>1,[Z.OneHot]:t=>Math.ceil(t/40),[Z.VECTOR_COSINE]:t=>Math.ceil(t/30)},tt={STRING:new Set([Z.HAMMING,Z.LEVENSTEIN,Z.NEEDLEMAN_WUNSCH,Z.MONOMER_CHEMICAL_DISTANCE,Z.OneHot]),UINT32ARRAY:new Set([Z.HAMMING,Z.EUCLIDEAN,Z.MANHATTAN,Z.MONOMER_CHEMICAL_DISTANCE,Z.LEVENSTEIN,Z.NEEDLEMAN_WUNSCH,Z.TANIMOTO,Z.COSINE,Z.VECTOR_COSINE,Z.SOKAL,Z.ASYMMETRIC,Z.OneHot,Z.Difference]),INT32ARRAY:new Set([Z.EUCLIDEAN,Z.MANHATTAN,Z.OneHot,Z.Difference,Z.VECTOR_COSINE]),FLOAT32ARRAY:new Set([Z.EUCLIDEAN,Z.MANHATTAN,Z.Difference,Z.VECTOR_COSINE]),NUMBER:new Set([Z.EUCLIDEAN,Z.MANHATTAN,Z.Difference]),BITARRAY:new Set([Z.TANIMOTO,Z.COSINE,Z.SOKAL,Z.ASYMMETRIC])};var et=function(t,e,n,i){return new(n||(n=Promise))((function(o,r){function s(t){try{l(i.next(t))}catch(t){r(t)}}function a(t){try{l(i.throw(t))}catch(t){r(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,a)}l((i=i.apply(t,e||[])).next())}))};function nt(t,e,n,i){return t.map(((t,i)=>`\n fn distanceScript${i}(aIndex: u32, bIndex: u32) -> f32 {\n let a = computeInfo.data${i}[aIndex];\n let b = computeInfo.data${i}[bIndex];\n let maxDistance: f32 = ${n};\n ${J[t](e[i],i)}\n }\n `)).join("\n")+"\n"+`\n fn combinedDistance(aIndex: u32, bIndex: u32) -> f32 {\n var distances: array<f32, ${t.length}>;\n ${t.map(((t,e)=>`distances[${e}] = distanceScript${e}(aIndex, bIndex);`)).join("\n")}\n ${K[i](t.length)}\n }\n \n `}var it=n(1991),ot=n.n(it);let rt=0;const st="cliffsDf",at=new h.Subject,lt="Δ activity",ct="SALI",ht="Similarity",ut="line index",dt=["From","To"],pt="filterCliffs";async function mt(t,e,i,o,l,c,h,u,d,p,m,f,g,y,b,v,w){rt++;const C=c/100;let A,S=!1;const x=f.inputs,M=await f.apply({[x[0].name]:e,[x[1].name]:h,...d.preprocessingFuncArgs??{}});let I=[];if(u===N){const e=await function(t,e,i,o,r,s,a=10,l=!1,c=2){const h=new Worker(new URL(n.p+n.u(980),n.b));let u;return h.postMessage({data:t,threshold:e,weights:i,aggregationMethod:o,distanceFns:r,distanceFnArgs:s,maxIterations:a,useWebGPU:l,inflate:c}),{promise:new Promise(((t,e)=>{u=t,h.onmessage=e=>{setTimeout((()=>h.terminate()),100),t(e.data.res)},h.onerror=t=>{setTimeout((()=>h.terminate()),100),e(t)}})),terminate:()=>{try{u(null),h.terminate()}catch(t){console.error(t)}}}}([M.entries],c,[1],"MANHATTAN",[h],[M.options??{}],d?.maxIterations??5,d.useWebGPU??!1).promise;t.columns.addNewInt(t.columns.getUnusedName("MCL Cluster")).init((t=>e.clusters[t])),I=[e.embedX,e.embedY]}else I=await Y([M.entries],u,[h],[1],"MANHATTAN",{...d,distanceFnArgs:[M.options??{}]});if(I.length!==i.length)throw new Error("Number of axes names should be equal to number of embedding dimensions");for(let e=0;e<I.length;++e)t.columns.addNewFloat(i[e]).init((t=>I[e][t]));let L=null;if(d.useWebGPU)try{L=await function(t,e=.8,n,i,o,r){return et(this,void 0,void 0,(function*(){const s=yield function(){return E(this,void 0,void 0,(function*(){if(!navigator.gpu)return console.error("WebGPU is not supported in this browser"),null;if(!T&&(T=yield navigator.gpu.requestAdapter({powerPreference:"high-performance"}),null==T))return null;let t=!1;if(_&&(_.lost.then((()=>{t=!0})),yield new Promise((t=>setTimeout(t,10)))),!_||t){const t=1e9,e=T.limits,n=e.maxBufferSize,i=e.maxStorageBufferBindingSize;try{return _=yield T.requestDevice({requiredLimits:{maxBufferSize:Math.min(n,t),maxStorageBufferBindingSize:Math.min(i,t)}}),_}catch(t){return console.error("Failed to create device with required limits",t),_=yield T.requestDevice(),_}}return _}))}();if(!s)return null;const a=Object.values(Z);if(n.some((t=>!a.includes(t))))throw new Error("Invalid distance metrics provided: "+n.join(", "));if(!Object.values(U).includes(i))throw new Error("Invalid aggregation function provided: "+i);const l=1-e;if(r.length!==t.length||r.length!==n.length||r.length!==o.length)throw new Error("Options, weigths and distance functions must be provided for each column");if(t.some((e=>e.length!==t[0].length)))throw new Error("All entry lists must be the same length");const c=t.length,h=t[0].length,u=t.map(((t,e)=>function(t,e=Z.HAMMING,n,i={gapOpenPenalty:1,gapExtensionPenalty:.6}){var o,r;let s=null;const a=t.some((t=>"string"==typeof t))?(s="STRING",t.map((t=>new Uint32Array(t.split("").map((t=>t.charCodeAt(0))))))):t.some((t=>"number"==typeof t))?(s="NUMBER",t.map((t=>new Float32Array([t])))):"object"==typeof t[0]&&t.some((t=>"_data"in t&&"_length"in t))?(s="BITARRAY",t.map((t=>t._data))):t.some((t=>t instanceof Float32Array))?(s="FLOAT32ARRAY",t):t.some((t=>t instanceof Uint32Array))?(s="UINT32ARRAY",t):t.some((t=>t instanceof Int32Array))?(s="INT32ARRAY",t):void 0;if(!a||!s)throw new Error("Invalid entry type, could not determine entry type from input list");const l=a[0]instanceof Int32Array?"INT32ARRAY":a[0]instanceof Float32Array?"FLOAT32ARRAY":"UINT32ARRAY",c=new Uint32Array(a.map((t=>t.length)));if(!tt[s]||!tt[s].has(e))throw new Error(`Distance metric '${e}' not supported for entry type '${s}'`);const h=c.reduce(((t,e)=>Math.max(t,e)),0),u=Q[e](h),d="INT32ARRAY"===l?Int32Array:"FLOAT32ARRAY"===l?Float32Array:Uint32Array,p=new d(a.length*h);a.forEach(((t,e)=>{p.set(t,e*h)}));let m="",f=0,g="FLOAT32ARRAY",y=null;if(e===Z.NEEDLEMAN_WUNSCH||e===Z.MONOMER_CHEMICAL_DISTANCE){let t=i.scoringMatrix&&i.alphabetIndexes?Object.keys(i.alphabetIndexes).reduce(((t,e)=>Math.max(t,e.charCodeAt(0))),0):-1;if(!i.alphabetIndexes||!i.scoringMatrix){for(let e=0;e<p.length;e++)p[e]>t&&(t=p[e]);i.scoringMatrix=new Array(t+1).fill(null).map((()=>new Array(t+1).fill(0))),i.alphabetIndexes={};for(let t=0;t<i.scoringMatrix.length;t++)i.scoringMatrix[t][t]=1,i.alphabetIndexes[String.fromCharCode(t)]=t}const e=(t+1)*(t+1),s=new Array(t+1).fill(null).map((()=>new Float32Array(t+1)));for(let e=0;e<t+1;e++)s[e][e]=1;const a=i.alphabetIndexes;for(const t of Object.keys(a))for(const e of Object.keys(a))t!==e&&(s[t.charCodeAt(0)][e.charCodeAt(0)]=i.scoringMatrix[a[t]][a[e]]);f=2+e,g="FLOAT32ARRAY",y=new Float32Array(f),y[0]=null!==(o=i.gapOpenPenalty)&&void 0!==o?o:1,y[1]=null!==(r=i.gapExtensionPenalty)&&void 0!==r?r:.6;let l=2;for(let t=0;t<s.length;t++)y.set(s[t],l),l+=s[t].length;m=`\n gapOpenPenalty${n}: f32,\n gapExtensionPenalty${n}: f32,\n similarityMatrix${n}: array<array<f32, ${t+1}>, ${t+1}>`}else if(e===Z.Difference){if(!i.range||"number"!=typeof i.range||i.range<=0){const t=p.reduce(((t,e)=>Math.min(t,e)),p[0]),e=p.reduce(((t,e)=>Math.max(t,e)),p[0]);i.range=e-t}i.range<=0&&(i.range=1),f=1,g="FLOAT32ARRAY",y=new Float32Array([i.range]),m=`\n range${n}: f32`}const b=p instanceof Int32Array?"i32":p instanceof Float32Array?"f32":"u32",v=`data${n}: array<array<${b}, ${h}>, ${a.length}>`;return{flatSourceArray:p,sourceArraySize:p.length,maxEntryLen:h,arraySizes:c,complexity:u,suppInfoBuffer:y,suppInfoSize:f,suppInfoType:g,suppInfoStructWgsl:m,entryType:s,dataTypeWGSL:b,dataStructWgsl:v,EncodedArrayConstructor:d}}(t,n[e],e,r[e])));if(0===c)throw new Error("No columns provided. Please provide at least one column of data.");1===c&&(i=U.MANHATTAN);let d=u.map((t=>t.suppInfoStructWgsl)).filter((t=>!!t&&""!=t)).join(",\n"),p=!1;d&&""!=d.trim()||(p=!0,d="\ndummy: f32\n");const m=u.map((t=>t.dataStructWgsl)).filter((t=>!!t&&""!=t)).join(",\n"),f=new Uint32Array(c*h);u.forEach(((t,e)=>{f.set(t.arraySizes,e*h)}));const g=1e4,y=100,b=u.reduce(((t,e)=>t+e.complexity),0),v=Math.ceil(6e3/b),w=Math.ceil(Math.sqrt(Math.ceil(100))),C=10*w,A=h*(h-1)/2,S=Math.ceil(A/g),x=s.createShaderModule({label:"Sparse matrix compute shader",code:`\n // each thread will perform 100 iterations at one time, comparing 100 pairs of entries.\n // in total, each thread will perform at most ${S} comparisons.\n // first is the result struct, containing is, js, and distances. each array with length of 100,\n // and also integer for how many pairs were found to be below threshold.\n struct SparseResult {\n i: array<array<u32, 100>, 10000>,\n j: array<array<u32, 100>, 10000>,\n distances: array<array<f32, 100>, 10000>,\n found: array<u32, 10000>,\n done: array<u32, 10000>\n }\n // struct for the data\n struct ComputeInfo {\n // start at cols and rows, and end at cols and rows for each thread, these will be calculated on cpu and passed to gpu.\n startAtCols: array<u32, 10000>,\n startAtRows: array<u32, 10000>,\n endAtCols: array<u32, 10000>,\n endAtRows: array<u32, 10000>,\n\n // the ACTUALLY sizes of each entry\n entrySizes: array<array<u32, ${h}>, ${c}>,\n // the weights for each entry\n weights: array<f32, ${c}>,\n // the data for each entry\n ${m} // an example of the dataWgsl would be:\n //data0: array<array<u32,20>,100>,\n //data1: array<array<u32,20>,100>\n }\n\n // struct for the supplementary information\n struct SuppInfo {\n // struct containing all the supplementary info, like scoring matrix, alphabet indexes, range, etc.\n ${d}\n };\n\n @group(0) @binding(0) var<storage, read_write> computeInfo: ComputeInfo;\n @group(0) @binding(1) var<storage, read_write> suppInfo: SuppInfo;\n @group(0) @binding(2) var<storage, read_write> results: SparseResult;\n @compute @workgroup_size(10, 10) fn calcSparseMatrix(\n @builtin(global_invocation_id) id: vec3<u32>\n ) {\n ${p?"let otherDummy = suppInfo.dummy * 2;":""} // just to make sure that the suppInfo is not optimized out\n let threadCol = id.x;\n let threadRow = id.y;\n let linearIndex = threadRow * ${C} + threadCol;\n if (linearIndex >= 10000) {\n return; // if we are out of bounds, return\n } \n var startAtCol: u32 = computeInfo.startAtCols[linearIndex];\n var startAtRow: u32 = computeInfo.startAtRows[linearIndex];\n let endAtCol: u32 = min(computeInfo.endAtCols[linearIndex], ${h}u);\n let endAtRow: u32 = min(computeInfo.endAtRows[linearIndex], ${h}u);\n let is = &results.i[linearIndex];\n let js = &results.j[linearIndex];\n let distances = &results.distances[linearIndex];\n results.found[linearIndex] = 0; // initialize the found counter\n var found: u32 = 0;\n if (results.done[linearIndex] > 0) {\n return; // if we are done, return\n }\n for (var i = 0; i < ${v}; i++) {\n if (startAtCol >= endAtCol && startAtRow >= endAtRow) {\n results.done[linearIndex] = 1;\n break;\n }\n if (found >= 100) {\n break;\n }\n let dist = combinedDistance(startAtCol, startAtRow);\n if (dist <= ${l}) {\n (*is)[found] = startAtCol;\n (*js)[found] = startAtRow;\n (*distances)[found] = dist;\n found = found + 1;\n }\n startAtCol = startAtCol + 1;\n if (startAtCol >= ${h}u) {\n startAtRow += 1;\n startAtCol = startAtRow + 1;\n }\n }\n results.found[linearIndex] = found;\n // update the startAtCols and startAtRows\n computeInfo.startAtCols[linearIndex] = startAtCol;\n computeInfo.startAtRows[linearIndex] = startAtRow;\n\n }\n\n // this will generate the distance script for each distance metric and then combine them into one\n ${nt(n,u.map((t=>t.maxEntryLen)),l,i)}\n\n\n `}),M=s.createComputePipeline({label:"sparse matrix compute pipeline",layout:"auto",compute:{module:x,entryPoint:"calcSparseMatrix"}}),I=new Uint32Array(g),L=new Uint32Array(g),N=new Uint32Array(g),P=new Uint32Array(g),$=Math.floor(A/g);let R=0,k=1;console.time("GPUthreadStarts");for(let t=0;t<g;t++){const e=9999===t?A-1:(t+1)*$,n=h-2-Math.floor(Math.sqrt(-8*e+4*h*(h-1)-7)/2-.5),i=e-h*n+Math.floor((n+1)*(n+2)/2);I[t]=k,L[t]=R,N[t]=i,P[t]=n,R=n,k=i}console.timeEnd("GPUthreadStarts");const O=4e4+h*c+c+u.reduce(((t,e)=>t+e.sourceArraySize),0),H=u.reduce(((t,e)=>t+e.suppInfoSize),0),G=1e6,F=O*Uint32Array.BYTES_PER_ELEMENT;let D=F;const B=15&F;0!==B&&(D+=16-B);const V=s.createBuffer({label:"compute info buffer",size:D,usage:GPUBufferUsage.STORAGE|GPUBufferUsage.COPY_SRC|GPUBufferUsage.COPY_DST,mappedAtCreation:!0}),W=V.getMappedRange();let j=0;new Uint32Array(W,j,g).set(I),j+=g*Uint32Array.BYTES_PER_ELEMENT,new Uint32Array(W,j,g).set(L),j+=g*Uint32Array.BYTES_PER_ELEMENT,new Uint32Array(W,j,g).set(N),j+=g*Uint32Array.BYTES_PER_ELEMENT,new Uint32Array(W,j,g).set(P),j+=g*Uint32Array.BYTES_PER_ELEMENT,new Uint32Array(W,j,f.length).set(f),j+=f.length*Uint32Array.BYTES_PER_ELEMENT,new Float32Array(W,j,c).set(o),j+=c*Float32Array.BYTES_PER_ELEMENT;for(const t of u){const e=t.EncodedArrayConstructor,n=t.sourceArraySize;new e(W,j,n).set(t.flatSourceArray),j+=n*e.BYTES_PER_ELEMENT}V.unmap();const q=H*Uint32Array.BYTES_PER_ELEMENT;let z=q;const Y=15&q;0!==Y&&(z+=16-Y),z=Math.max(z,16);const K=s.createBuffer({label:"supp info buffer",size:z,usage:GPUBufferUsage.STORAGE|GPUBufferUsage.COPY_SRC|GPUBufferUsage.COPY_DST,mappedAtCreation:!0}),X=K.getMappedRange();let J=0;for(const t of u)t.suppInfoBuffer&&t.suppInfoBuffer.byteLength>0&&t.suppInfoSize>0&&(new("UINT32ARRAY"===t.suppInfoType?Uint32Array:Float32Array)(X,J,t.suppInfoBuffer.length).set(t.suppInfoBuffer),J+=t.suppInfoBuffer.byteLength);0===J&&new Uint32Array(X,0,4).set([1,1,1,1]),K.unmap();const et=302e4*Uint32Array.BYTES_PER_ELEMENT;let it=et;const ot=15&et;0!==ot&&(it+=16-ot);const rt=s.createBuffer({label:"results buffer",size:it,usage:GPUBufferUsage.STORAGE|GPUBufferUsage.COPY_SRC}),st=s.createBindGroup({label:"bindGroup for sparse matrix buffer",layout:M.getBindGroupLayout(0),entries:[{binding:0,resource:{buffer:V}},{binding:1,resource:{buffer:K}},{binding:2,resource:{buffer:rt}}]}),at=s.createBuffer({label:"results out buffer",size:rt.size,usage:GPUBufferUsage.MAP_READ|GPUBufferUsage.COPY_DST}),lt=[],ct=[],ht=[];let ut=!1;for(;!ut;){const t=s.createCommandEncoder({label:"distance encoder"}),e=t.beginComputePass({label:"distance compute pass"});e.setPipeline(M),e.setBindGroup(0,st),e.dispatchWorkgroups(w,w),e.end(),t.copyBufferToBuffer(rt,0,at,0,at.size);const n=t.finish();s.queue.submit([n]),yield s.queue.onSubmittedWorkDone(),yield at.mapAsync(GPUMapMode.READ);const i=at.getMappedRange();let o=0;const r=new Uint32Array(i,o,G);o+=G*Uint32Array.BYTES_PER_ELEMENT;const a=new Uint32Array(i,o,G);o+=G*Uint32Array.BYTES_PER_ELEMENT;const l=new Float32Array(i,o,G);o+=G*Float32Array.BYTES_PER_ELEMENT;const c=new Uint32Array(i,o,g);o+=g*Uint32Array.BYTES_PER_ELEMENT,ut=new Uint32Array(i,o,g).every((t=>1===t));const h=c.reduce(((t,e)=>t+e),0),u=new Uint32Array(h),d=new Uint32Array(h),p=new Float32Array(h);let m=0;for(let t=0;t<c.length;t++){const e=c[t];0!==e&&(u.set(r.subarray(t*y,t*y+e),m),d.set(a.subarray(t*y,t*y+e),m),p.set(l.subarray(t*y,t*y+e),m),m+=e)}lt.push(u),ct.push(d),ht.push(p),at.unmap()}const dt=lt.reduce(((t,e)=>t+e.length),0),pt=new Uint32Array(dt),mt=new Uint32Array(dt),ft=new Float32Array(dt);let gt=0;for(let t=0;t<lt.length;t++)pt.set(lt[t],gt),mt.set(ct[t],gt),ft.set(ht[t],gt),gt+=lt[t].length;return V.destroy(),K.destroy(),rt.destroy(),at.destroy(),{i:pt,j:mt,distance:ft}}))}([M.entries],C,[h],U.MANHATTAN,[1],[M.options??{}])}catch(t){console.error(t)}L||(d.useWebGPU&&console.error("WebGPU sparse matrix calculation failed, falling back to CPU implementation"),L=await(new F).calc(M.entries,h,C,M.options));const P=await async function(t,e){const n=t.distance.map(((n,i)=>{const o=Math.abs(e.get(t.i[i])-e.get(t.j[i]));return 0!=n?o/n:1/0})),i=t.distance.map((t=>1-t)),o=t.i,r=t.j,s=a.BitSet.create(e.length);return t.distance.forEach(((e,n)=>{s.set(t.i[n],!0),s.set(t.j[n],!0)})),{simVals:i,saliVals:n,n1:o,n2:r,cliffsBitSet:s}}(L,l),$=function(t,e,n,i,o,r,s){const l=new Array(t).fill(0);for(let t=0;t!=i.length;++t)n[t]!=1/0&&(s.get(i[t])>s.get(o[t])?l[i[t]]+=n[t]:l[o[t]]+=n[t]);return a.Column.fromList("double",e,l)}(e.length,`sali_${i[0].substring(i[0].lastIndexOf("_"))}`,P.saliVals,P.n1,P.n2,0,l);t.columns.add($);const k=P.cliffsBitSet,O=function(t){const e=t.filter((t=>t!==1/0)),n=e.reduce(((t,e)=>Math.min(t,e)),Number.MAX_VALUE);return{max:e.reduce(((t,e)=>Math.max(t,e)),n),min:n}}(P.saliVals),H=.8/(O.max-O.min),G=r.shell.getTableView(t.name),B=G.addViewer(a.VIEWER.SCATTER_PLOT,{xColumnName:i[0],yColumnName:i[1],size:$.name,color:l.name,showXSelector:!1,showYSelector:!1,showSizeSelector:!1,showColorSelector:!1,markerMinSize:5,markerMaxSize:25,title:o}),V=function(t,e,n,i,o,r,s,l){const c={from:new Uint32Array(e.n1.length),to:new Uint32Array(e.n1.length),opacities:new Float32Array(e.n1.length),colors:new Array(e.n1.length),widths:new Float32Array(e.n1.length)};for(let n=0;n<e.n1.length;n++)c.from[n]=e.n1[n],c.to[n]=e.n2[n],c.opacities[n]=e.saliVals[n]===1/0?1:.2+(e.saliVals[n]-s.min)*l,c.colors[n]=t.selection.get(c.from[n])&&t.selection.get(c.to[n])?"255,255,0":"0,128,0",c.widths[n]=1;const h=a.DataFrame.create(c.from.length);return dt.forEach(((t,e)=>{h.columns.addNewString(t).init((t=>n.get(0===e?c.from[t]:c.to[t]))),function(t,e){Object.keys(e).forEach((n=>{t.tags[n]=e[n]}))}(h.col(t),r),h.col(t).semType=o})),h.columns.addNewFloat(lt).init((t=>Math.abs(i.get(c.from[t])-i.get(c.to[t])))),h.columns.addNewInt(ut).init((t=>t)),h.columns.addNewFloat(ct).init((t=>e.saliVals[t])),h.columns.addNewFloat(ht).init((t=>e.simVals[t])),h.name=`${st}${rt}`,{lines:c,linesDf:h}}(t,P,e,l,p,m,O,H);V.lines.skipMultiLineCalculation=!0,V.linesDf.col(ct).setTag("description","Structure−Activity Landscape Index (activity difference divided by 1 minus similarity)");const j=new W(B,i[0],i[1],V.lines,D.none),q=b?b(V.linesDf,dt).sort([ct],[!1]):V.linesDf.plot.grid().sort([ct],[!1]);q.col(ut)&&(q.col(ut).visible=!1),t.temp[".cliffsDfGrid"]=q;const z=s.button(`${V.linesDf.rowCount} cliffs`,(()=>{const t=ot()(G.viewers).some((t=>t.dataFrame.name===`${st}${rt}`));w&&!t&&G.addViewer(q),G.dockManager.dock(q,"down",null,"Activity cliffs",v??.2)}));z.classList.add("scatter_plot_link","cliffs_grid");const K=s.input.toggle("Show only cliffs",{value:!1,onValueChanged:e=>{e?(B.dataFrame.setTag(pt,i[0]),t.filter.and(k),at.next(i[0])):(B.dataFrame.setTag(pt,""),t.filter.setAll(!0),at.next(""))}});B.root.prepend(s.divH([z,K.root],"cliffs_div")),at.subscribe((t=>{K.enabled=""===t||t===i[0]})),t.onRowsFiltering.subscribe((()=>{K.value&&t.filter.and(P.cliffsBitSet)}));const X=r.events.onViewerClosed.subscribe((t=>{t.args.viewer===B&&(G.dockManager.close(q.root),X.unsubscribe(),G.subs=G.subs.filter((t=>t!==X)))}));return G.subs.push(X),V.linesDf.onCurrentCellChanged.subscribe((()=>{for(let t=0;t<V.linesDf.rowCount;t++)V.lines.widths[t]=t===V.linesDf.currentRowIdx?3:1;j.linesToRender=V.lines;const n=V.linesDf.currentCol&&V.linesDf.currentCol.name===dt[1]?V.lines.to:V.lines.from,o=-1!==V.linesDf.currentRowIdx?V.linesDf.currentRowIdx:null;if(B.dataFrame.currentRowIdx=o?n[o]:-1,null!==o){const n=V.linesDf.currentRowIdx;j.currentLineId=n;const{zoomLeft:a,zoomRight:c,zoomTop:h,zoomBottom:u}=function(t,e,n,i,o,r){const s=Math.abs(n-o),a=Math.abs(i-r),l=t/s,c=e/a,h=Math.min(l,c),u=t/h*5,d=e/h*5,p=(n<o?n:o)+s/2-u/2,m=(i>r?i:r)-a/2+d/2;return{zoomLeft:p,zoomRight:p+u,zoomTop:m,zoomBottom:m-d}}(B.viewport.width,B.viewport.height,B.dataFrame.get(i[0],V.lines.from[n]),B.dataFrame.get(i[1],V.lines.from[n]),B.dataFrame.get(i[0],V.lines.to[n]),B.dataFrame.get(i[1],V.lines.to[n]));B.zoom(a,h,c,u),K.value?t.filter.and(k):!0===K.enabled&&t.filter.setAll(!0),setTimeout((()=>{!function(t,e,n,i,o,a,l,c,h){const u=e.getPane("Cliff Details");s.empty(u.root);const d=h({points:[n,i],lineId:o,df:t,seqCol:a,activityCol:l,sali:c});u.root.append(d),setTimeout((()=>{r.shell.o=e.root}),500)}(t,A,V.lines.from[o],V.lines.to[o],o,e,l,V.linesDf.get(ct,o),y);const n=B.dataFrame.getSortedOrder(G.grid.sortByColumns,G.grid.sortTypes);G.grid.scrollToCell(e.name,n.indexOf(B.dataFrame.currentRowIdx))}),1e3)}})),V.linesDf.onSelectionChanged.subscribe((e=>{setTimeout((()=>(()=>{const e=a.BitSet.create(t.rowCount);for(let t=0;t<V.linesDf.rowCount;t++){const n=V.linesDf.selection.get(t);n&&(e.set(V.lines.from[t],!0),e.set(V.lines.to[t],!0)),V.lines.colors[t]=n?"255,255,0":"0,128,0"}t.selection.copyFrom(e),j.linesToRender=V.lines})()),100)})),t.onSelectionChanged.subscribe((e=>{!1===t.selection.anyTrue&&"number"==typeof e&&(S?S=!1:(t=>{t.selection.setAll(!1);for(let t=0;t<V.lines.colors.length;t++)V.lines.colors[t]="0,128,0";j.linesToRender=V.lines})(q.dataFrame))})),j.lineClicked.subscribe((e=>{if(S=!0,j.currentLineId=e.id,-1!==e.id){const n=V.linesDf.selection.clone();setTimeout((()=>{e.event.ctrlKey?(n.set(e.id,!n.get(e.id)),V.linesDf.selection.copyFrom(n)):(V.linesDf.currentRowIdx!==e.id&&(V.linesDf.currentRowIdx=e.id,t.currentRowIdx=V.lines.from[e.id]),V.linesDf.selection.copyFrom(n));const i=V.linesDf.getSortedOrder(q.sortByColumns,q.sortTypes);q.scrollToCell(dt[0],i.indexOf(e.id))}),500)}})),j.lineHover.pipe((0,R.debounceTime)(500)).subscribe((n=>{-1!==n.id&&-1===t.mouseOverRowIdx&&s.tooltip.show(g({lineId:n.id,points:[V.lines.from[n.id],V.lines.to[n.id]],df:t,seqCol:e,activityCol:l}),n.x,n.y)})),B.addProperty("similarityLimit","double",C),A=function(){const t=s.accordion(),e=s.element("i");return e.className="grok-icon svg-icon svg-view-layout",t.addTitle(s.span([e,s.label("Activity cliffs")])),t.addPane("Cliff Details",(()=>s.divText("Cliff has not been selected")),!0),r.shell.o=t.root,t}(),B}var ft,gt=n(2003),yt=n(3516),bt=n(6718),vt=n(3077),wt=n(439);!function(t){t.IDENTITY="identity",t.SIMILARITY="similarity"}(ft||(ft={}));var Ct=n(9192);class At{constructor(){this.maxIterations={uiName:"Max iterations",value:0,tooltip:"Maximum iterations for MCL process.Default is \n 0 which will construct the clusters with plain sparse matrix. Values greater than 0 will \n perform MCL with the given number of iterations and will result in trans-cluster activity cliff lines."},this.useWebGPU={uiName:"Use WebGPU",value:!1,tooltip:"Use WebGPU for MCL calculation. (Experimental)",type:"boolean"}}}class St extends ${constructor(t={}){super({...t,enableMCL:!0});const e=this.tableInput.value.columns.numericalNoDateTime;this.activitiesInput=s.input.column("Activities",{table:this.tableInput.value,value:a.Utils.firstOrNull(e),filter:t=>Array.from(e).includes(t)}),this.activitiesInputRoot=this.activitiesInput.root,this.similarityInput=s.input.int("Similarity cutoff",{value:80}),this.methodsParams[N]=new At}onTableInputChanged(){if(super.onTableInputChanged(),this.activitiesInputRoot){s.empty(this.activitiesInputRoot);const t=this.tableInput.value.columns.numerical;this.activitiesInput=s.input.column("Activities",{table:this.tableInput.value,value:a.Utils.firstOrNull(t),filter:e=>Array.from(t).includes(e)}),Array.from(this.activitiesInput.root.children).forEach((t=>this.activitiesInputRoot.append(t)))}}getEditor(){return s.div([this.tableInput,this.colInputRoot,this.preprocessingFunctionInputRoot,this.preprocessingFuncSettingsDiv,this.activitiesInputRoot,this.similarityMetricInputRoot,this.methodInput,this.methodSettingsDiv,this.similarityMetricInputRoot,this.similarityInput],{style:{minWidth:"320px"},classes:"ui-form dim-reduction-dialog-form"})}getParams(){return{...super.getParams(),activities:this.activitiesInput.value,similarityThreshold:this.similarityInput.value}}getInput(){return{...super.getInput(),activityCol:this.activitiesInput.value.name,simThreshold:this.similarityInput.value}}async applyInput(t){super.applyInput(t),this.activitiesInput.value=this.tableInput.value.col(t.activityCol),this.similarityInput.value=t.simThreshold}}var xt,Et,Tt,_t=function(t,e,n,i){return new(n||(n=Promise))((function(o,r){function s(t){try{l(i.next(t))}catch(t){r(t)}}function a(t){try{l(i.throw(t))}catch(t){r(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,a)}l((i=i.apply(t,e||[])).next())}))};function Mt(t){const e=["Embed_X","Embed_Y"],n=t.columns.names().filter((t=>t.includes(e[0]))).length+1;return e.map((t=>`${t}_${n}`))}function It(t,e){return`${e} (${t.length>4?`${t.length} columns`:t.map((t=>t.name)).join(", ")})`}n(5540),function(t){t.ADD="ADD",t.SUB="SUB",t.MULT="MULT"}(xt||(xt={})),function(t){t.SQUARE="SQUARE",t.INVERSE="INVERSE",t.TRANSPOSE="TRANSPOSE",t.NORM="NORM",t.COLUMN_NORM="COLUMN_NORM"}(Et||(Et={})),function(t){t.SCALARMULT="SCALARMULT",t.SCALARADD="SCALARADD",t.SCALARPOW="SCALARPOW"}(Tt||(Tt={})),Object.prototype.toString;var Lt=n(6873),Nt=n(4356),Pt=n(6717),$t=n(4870),Rt=n(3856),kt=n(6882),Ot=n(7278),Ht=n(5553),Gt=n(6642),Ft=n(3599),Dt=n(673),Bt=n(8312);class Vt extends Gt.sD{monomerLib=null;seqHelper=null;constructor(t,e){super(t,e,to.logger),(0,bt.pj)().then((t=>{this.monomerLib=t.getMonomerLib(),this.dirty=!0,this.gridCol?.grid?.invalidate(),this.subs.push(this.monomerLib.onChanged.subscribe((()=>{this.dirty=!0,this.gridCol?.grid?.invalidate()})))})),(0,Bt.Q)().then((t=>{this.seqHelper=t,this.dirty=!0,this.gridCol?.grid?.invalidate()}))}}var Wt=n(4139);const Ut=new class{constructor(){this.seqHandler="seq-handler",this.notationProvider="seq-handler.notation-provider"}};class jt extends a.SemanticValue{get value(){return this.seqHandler.column.get(this.rowIdx)}set value(t){this.seqHandler.column.set(this.rowIdx,t)}get helm(){return this.seqHandler.getHelm(this.rowIdx)}isDna(){return this.seqHandler.alphabet===wt.YI.DNA}isRna(){return this.seqHandler.alphabet===wt.YI.RNA}isNaturalPeptide(){return this.seqHandler.alphabet===wt.YI.PT}isHelm(){return this.seqHandler.isHelm()}constructor(t,e){if(null==e.column.dataFrame)throw new Error("Attribute .dataFrame is required for SeqValueBase from cell");const n=e.column.dataFrame.cell(t,e.column.name);super(a.SemanticValue.fromTableCell(n).dart),this.rowIdx=t,this.seqHandler=e}getSplitted(){return this.seqHandler.getSplitted(this.rowIdx)}getSplittedWithSugarsAndPhosphates(){if(!this.isDna()&&!this.isRna())return this.getSplitted();const t=(0,Ot.qp)(this.helm),e=[],n=/\(|\)/;for(let i=0;i<t.length;i++){const o=t.getOriginal(i),r=o.split(n).filter((t=>!!t));3===r.length?(e.push(r[0]),e.push(r[1]),e.push(r[2])):e.push(o)}return new Ot.Mu(e,this.seqHandler.defaultGapOriginal)}}const qt=gt.zS;function zt(t){const e=!ot().enumerate(t).some((([e,n])=>e.length>1&&0!=n&&n!=t.length-1)),n=[],i=e?"":" ";for(const[e,o]of ot().enumerate(t)){let r=e;o<t.length&&(r+=`${e?"":"-"}${i}`),n.push(r)}return[n,e]}class Yt extends a.GridCellRenderer{seqHelper;get name(){return"sequence"}get cellType(){return"sequence"}get defaultHeight(){return 30}get defaultWidth(){return 230}hasMouseOver=!1;constructor(){super(),this.seqHelper=to.seqHelper}getRendererBack(t){const[e,n,i]=(0,Gt.BG)(t);if(n.meta.units!==gt.Hi.CUSTOM)return i.rendererBack;let o=null;return this.seqHelper&&(o=this.seqHelper.getSeqHandler(n).getRendererBack(e,n)),o}onClick(t,e){if(t.cell.column.temp["current-word"]=t.cell.value,t.grid.invalidate(),t.cell.column.meta.units===gt.Hi.CUSTOM){const n=this.getRendererBack(t);n?.onClick(t,e)}}onMouseEnter(t,e){const n=this.getRendererBack(t);n?.onMouseEnter(t,e),this.hasMouseOver=!0}onMouseMove(t,e){const n=this.getRendererBack(t);n?.onMouseMove(t,e)}onMouseLeave(t,e){if((0,Ht.WN)(t,null),t?.grid){const e=t.grid.onEvent("d4-grid-show-tooltip").subscribe((t=>{e.unsubscribe(),this.hasMouseOver&&t.preventDefault()}))}this.hasMouseOver=!1}onDoubleClick(t,e){const n=this.getRendererBack(t);n?.onDoubleClick(t,e)}onKeyDown(t,e){const n=this.getRendererBack(t);n?.onKeyDown(t,e)}onKeyPress(t,e){const n=this.getRendererBack(t);n?.onKeyPress(t,e)}renderInt(t,e,n,i,o,r,s){const[a,l,c]=(0,Gt.BG)(r);if(!l)return;const h=l.temp,u=this.seqHelper.getSeqHandler(l);let d=(to.properties?to.properties.maxMonomerLength:4)??50;if(Rt.gp.maxMonomerLength in l.tags){const t=parseInt(l.getTag(Rt.gp.maxMonomerLength));d=!isNaN(t)&&t?t:50}if(".mm.cellRenderer.maxMonomerLength"in h){const t=h[".mm.cellRenderer.maxMonomerLength"];d=!isNaN(t)&&t?t:50}let p=c.rendererBack;p||(p=c.rendererBack=new kt.Jy(a,l,to.logger,d,(()=>{const{font:t,fontWidth:e}=kt.Jy.getFontSettings(l);return{font:t,fontCharWidth:e,separatorWidth:u.isMsa()?8:0,monomerToShort:qt}})),l.temp[".mm.cellRenderer.settingsChanged"],Dt.s.true,p.init().then((()=>{}))),p.render(t,e,n,i,o,r,s)}render(t,e,n,i,o,r,s){if(r.cell.column?.meta?.units!==gt.Hi.CUSTOM)this.renderInt(t,e,n,i,o,r,s);else{const a=this.getRendererBack(r);a?.render(t,e,n,i,o,r,s)}}}class Kt extends Vt{constructor(t,e){super(t,e)}render(t,e,n,i,o,r,s){const a=window.devicePixelRatio,l=r.grid,c=r.cell.value??"",h=this.tableCol.tags[gt.gp.separator],u=this.tableCol.meta.units;i=(0,kt.U0)(l,t,e,i,a);const[d,p]=c.split("#"),m=this.tableCol.temp[Ut.notationProvider]?.separatorSplitter??(0,Ot.Iv)(u,h),f=m(d),g=m(p),y=ot().count(0).take(f.length).map((t=>f.getCanonical(t))).toArray(),b=ot().count(0).take(g.length).map((t=>g.getCanonical(t))).toArray(),v=this.tableCol.getTag(gt.gp.alphabet);Xt(t,e,n,i,o,y,b,v===gt.YI.RNA||v===gt.YI.DNA?Ft.o.NUCLEOTIDE:Ft.o.AA,this.monomerLib,void 0,void 0)}async awaitRendered(t=1e4,e=`${t} timeout`){return Promise.resolve()}static getOrCreate(t){const[e,n,i]=(0,Gt.BG)(t);let o=i.rendererBack;return o||(o=i.rendererBack=new Kt(e,n)),o}}class Zt extends a.GridCellRenderer{get name(){return"MacromoleculeDifferenceCR"}get cellType(){return Wt.uF.MACROMOLECULE_DIFFERENCE}get defaultHeight(){return 30}get defaultWidth(){return 230}render(t,e,n,i,o,r,s){Kt.getOrCreate(r).render(t,e,n,i,o,r,s)}}function Xt(t,e,n,i,o,r,s,a,l,c,h){if(r.length!==s.length){const t=function(t,e){let n=0,i=0;const o=t.length>e.length?t:e,r=t.length>e.length?e:t;for(let t=0;t<r.length;t++)o[t]===r[t]&&n++;const s=o.length-r.length;for(let t=o.length-1;t>s;t--)o[t]===r[t-s]&&i++;const a=new Array(Math.abs(t.length-e.length)).fill(wt.b9[gt.Hi.FASTA]);function l(t){return n>i?t.concat(a):a.concat(t)}return t.length>e.length?e=l(ot()(e).toArray()):t=l(ot()(t).toArray()),{subParts1:t,subParts2:e}}(r,s);r=t.subParts1,s=t.subParts2}const u=t.measureText(zt(r).join("")),d=t.measureText(zt(s).join("")),p=Math.max(u.width,d.width);c&&(i=p+4*r.length,t.canvas.width=p+4*r.length);let m=Math.max(e,e+(i-(p+4*r.length))/2)+5;const f=Math.max(n,n+(o-28)/2);t.save();try{t.beginPath(),t.rect(e,n,c?p+4*r.length:i,o),t.clip(),t.font="12px monospace",t.textBaseline="top";const u=7;for(let e=0;e<r.length;e++){const n=r[e],c=s[e];let d=kt.S$;if(l&&(d=l.getMonomerTextColor(a,n)),n!=c){let r=kt.S$;l&&(r=l.getMonomerTextColor(a,c));const s=(0,Rt.oZ)(t,n,m,f-u,i,o,{color:d,pivot:0,left:!0}),p=(0,Rt.oZ)(t,c,m,f+u,i,o,{color:r,pivot:0,left:!0});m=Math.max(p,s),h&&(h[e]=Jt(n,c,d,r,f,u,o))}else m=(0,Rt.oZ)(t,n,m,f,i,o,{color:d,pivot:0,left:!0,transparencyRate:.5});m+=4}}finally{t.restore()}}function Jt(t,e,n,i,o,r,s){const a=document.createElement("canvas"),l=a.getContext("2d");l.font="12px monospace";const c=l.measureText(zt([t]).join("")).width,h=l.measureText(zt([e]).join("")).width,u=Math.max(c,h);return a.height=s,a.width=u+4,l.font="12px monospace",l.textBaseline="top",(0,Rt.oZ)(l,t,0,o-r,u,s,{color:n,pivot:0,left:!0}),(0,Rt.oZ)(l,e,0,o+r,u,s,{color:i,pivot:0,left:!0}),a}var Qt,te=n(8070),ee=n(4326);!function(t){t.Unknown="unknown",t.FR="framework",t.CDR="cdr"}(Qt||(Qt={}));const ne=new class{constructor(){this.regionTypes=[Qt.CDR],this.chains=["Heavy","Light"],this.skipEmptyPositions=!1,this.fitWidth=!1,this.positionWidth=16,this.positionHeight=ee.fH.Entropy,this.filterSource=ee.Fo.filterSource}};var ie=n(7602),oe=n(250);const re=Qt;var se,ae;!function(t){t.STYLE="Style",t.BEHAVIOR="Behavior",t.LAYOUT="Layout",t.DATA="Data"}(se||(se={})),function(t){t.skipEmptyPositions="skipEmptyPositions",t.regionTypes="regionTypes",t.chains="chains",t.fitWidth="fitWidth",t.positionWidth="positionWidth",t.positionHeight="positionHeight",t.filterSource="filterSource"}(ae||(ae={}));const le=ne;class ce extends a.JsViewer{viewed=!1;regionsFg=null;regionsRoot=null;isOpened=!1;panelNode=null;regions=[];regionTypes;chains;skipEmptyPositions;fitWidth;positionWidth;positionHeight;filterSource;constructor(){super(),this.skipEmptyPositions=this.bool(ae.skipEmptyPositions,le.skipEmptyPositions,{category:se.DATA}),this.regionTypes=this.stringList(ae.regionTypes,le.regionTypes,{category:se.DATA,choices:Object.values(re).filter((t=>t!=re.Unknown))}),this.chains=this.stringList(ae.chains,le.chains,{category:se.DATA,choices:["Heavy","Light"]}),this.fitWidth=this.bool(ae.fitWidth,le.fitWidth,{category:se.LAYOUT}),this.positionWidth=this.float(ae.positionWidth,le.positionWidth,{category:se.LAYOUT,editor:"slider",min:0,max:64,description:"Internal WebLogo viewers property width of position."}),this.positionHeight=this.string(ae.positionHeight,le.positionHeight,{category:se.LAYOUT,choices:Object.keys(ee.fH)}),this.filterSource=this.string(ae.filterSource,le.filterSource,{category:se.BEHAVIOR,choices:Object.values(ee.lT)}),this.viewSyncer=new ie.g(to.logger)}static viewerCounter=-1;viewerId=++ce.viewerCounter;viewerToLog(){return`VdRegionsViewer<${this.viewerId}>`}async init(){this.subs.push((0,h.fromEvent)(this.root,"mousemove").subscribe(this.rootOnMouseMove.bind(this)))}detach(){const t=`${this.viewerToLog()}.detach()`,e=super.detach.bind(this);this.viewSyncer.sync(`${t}`,(async()=>{this.setDataInProgress||(this.viewed&&(await this.destroyView("detach"),this.viewed=!1),e())}))}onTableAttached(){super.onTableAttached(),this.setData(this.regions)}onPropertyChanged(t){if(super.onPropertyChanged(t),t){switch(t.name){case ae.regionTypes:case ae.chains:this.setData(this.regions)}switch(t.name){case ae.skipEmptyPositions:for(let t=0;t<this.logos.length;++t)for(const e of this.chains)this.logos[t][e].setOptions({[oe.n5.skipEmptyPositions]:this.skipEmptyPositions});this.calcSize();break;case ae.fitWidth:case ae.positionWidth:this.calcSize();break;case ae.positionHeight:for(let t=0;t<this.logos.length;++t)for(const e of this.chains)this.logos[t][e].setOptions({[oe.n5.positionHeight]:this.positionHeight});this.calcSize();break;case ae.filterSource:this.filterSourceInput.value=this.filterSource;break;default:this.setData(this.regions)}}else console.warn("Bio: VdRegionsViewer.onPropertyChanged() property is null")}setData(t){const e=`${this.viewerToLog()}.setData()`;to.logger.debug(`${e}, in, regions.length = ${t.length}`),this.viewSyncer.sync(`${e}`,(async()=>{if(!this.setDataInProgress){this.setDataInProgress=!0;try{this.viewed&&(await this.destroyView("setData"),this.viewed=!1),this.regions=t,this.viewed||(await this.buildView("setData"),this.viewed=!0)}finally{this.setDataInProgress=!1}}}))}viewSyncer;setDataInProgress=!1;host=null;filterSourceInput;mainLayout=null;logos=[];viewSubs=[];async destroyView(t){to.logger.debug(`Bio: VdRegionsViewer.destroyView( mainLayout = ${this.mainLayout?"value":"none"} ), purpose = '${t}', this.regions.length = ${this.regions.length}`),this.filterSourceInput&&s.empty(this.filterSourceInput.root),null!=this.mainLayout&&(this.mainLayout.remove(),this.host.remove(),this.host=null,this.mainLayout=null);for(const t of this.viewSubs)t.unsubscribe()}async buildView(t){to.logger.debug(`Bio: VdRegionsViewer.buildView() begin, purpose = '${t}', this.regions.length = ${this.regions.length}`);const e=this.regions.filter((t=>this.regionTypes.includes(t.type))),n=Array.from(new Set(e.map((t=>t.order)))).sort(),i=[];for(let t=0;t<n.length;t++)for(const o of this.chains){const r=e.find((e=>e.order==n[t]&&e.chain==o));i.push((async()=>{const e=await this.dataFrame.plot.fromType("WebLogo",{sequenceColumnName:r.sequenceColumnName,startPositionName:r.positionStartName,endPositionName:r.positionEndName,fixWidth:!0,skipEmptyPositions:this.skipEmptyPositions,positionWidth:this.positionWidth,positionHeight:this.positionHeight,filterSource:this.filterSource});return e.onSizeChanged.subscribe((()=>{this.calcSize()})),[t,o,e]})())}const o=await Promise.all(i);this.logos=new Array(n.length);for(let t=0;t<n.length;++t)this.logos[t]={};for(const[t,e,n]of o)this.logos[t][e]=n,this.viewSubs.push(n.onFreqsCalculated.subscribe((()=>{this.calcSize()})));this.mainLayout=s.table(this.chains,(t=>[...n.length>0?[s.div(t,{style:{transform:"rotate(-90deg)",font:"12px Roboto, Roboto Local, sans-serif",textAlign:"center",width:"16px",marginTop:"24px",marginLeft:"6px"}})]:[],...[...Array(n.length).keys()].map((e=>{const n=this.logos[e][t];return n.root.style.height="100%",s.div([n.root],{style:{marginTop:"4px",marginBottom:"4px"}})}))]),["",...[...Array(n.length).keys()].map((t=>e.find((e=>e.order==n[t]&&e.chain==this.chains[0])).name||"Name"))]),this.mainLayout.className="mlb-vd-regions-viewer-table2",this.filterSourceInput=s.input.choice("Data source",{value:this.filterSource,items:Object.values(ee.lT),onValueChanged:this.filterSourceInputOnValueChanged.bind(this)}),this.filterSourceInput.root.style.position="absolute",this.filterSourceInput.root.style.right="9px",this.filterSourceInput.root.style.top="-4px",Math.ceil(255*Math.random()).toString(16),this.host=s.div([this.mainLayout,this.filterSourceInput.root],{}),this.root.appendChild(this.host),this.root.style.overflowX="auto",this.calcSize(),this.viewSubs.push(s.onSizeChanged(this.root).subscribe(this.rootOnSizeChanged.bind(this))),to.logger.debug("Bio: VdRegionsViewer.buildView() end")}calcSizeRequested=!1;calcSize(){to.logger.debug("Bio: VdRegionsViewer.calcSize(), start");const t=()=>{if(!this.host)return;const t=(this.root.clientHeight-54)/this.chains.length;let e=0;for(let n=0;n<this.logos.length;n++){for(const e of this.chains)this.logos[n][e].root.style.height=`${t}px`;e+=Math.max(...this.chains.map((t=>this.logos[n][t].Length)))}if(this.fitWidth){if(this.logos.length>0&&e>0){const t=22,n=13,i=9,o=(this.root.clientWidth-t-(this.logos.length-1)*i-n)/e;for(let t=0;t<this.logos.length;t++)for(const e of this.chains){const n=this.logos[t][e];n.setOptions({[oe.n5.positionWidth]:o-n.positionMarginValue}),n.root.style.width=o*n.Length+"px"}}this.host.style.setProperty("overflow","hidden","important")}else{for(let t=0;t<this.logos.length;t++)for(const e of this.chains)this.logos[t][e].setOptions({[oe.n5.positionWidth]:this.positionWidth});this.host.style.removeProperty("overflow")}0===this.positionWidth?this.host.style.setProperty("overflow-x","hidden","important"):this.host.style.removeProperty("overflow-x")};this.calcSizeRequested||(this.calcSizeRequested=!0,window.setTimeout((()=>{t(),this.calcSizeRequested=!1}),0))}rootOnSizeChanged(t){this.calcSize()}rootOnMouseMove(t){}filterSourceInputOnValueChanged(){const t=`${this.viewerToLog()}.filterSourceInputOnValueChanged()`,e=this.filterSourceInput.value;this.viewSyncer.sync(`${t}`,(async()=>{if(this.filterSource!==e){this.props.getProperty(ae.filterSource).set(this,e);for(let t=0;t<this.logos.length;t++)for(let e=0;e<this.chains.length;e++){const n=this.chains[e];this.logos[t][n].setOptions({[oe.n5.filterSource]:this.filterSource})}}}))}_onRendered=new h.Subject;get onRendered(){return this._onRendered}invalidate(t){const e=`${this.viewerToLog()}.invalidate(${t?` <- ${t} `:""})`;this.viewSyncer.sync(`${e}`,(async()=>{this._onRendered.next()}))}async awaitRendered(t=5e3){await(0,te.PE)(this.onRendered,(()=>{}),(()=>{this.invalidate()}),t);const e=this.viewSyncer.resetErrors();if(e.length>0)throw e[0]}}var he=n(6625),ue=n(6863);async function de(t,e,n="Morgan"){const i=t.length,o=to.seqHelper.getSeqHandler(t),r=Array(i);let s=1;const a=new Map,l=t.categories,c=t.getRawData();for(let e=0;e<i;e++){if(null===l[c[e]]||t.isNone(e)){r[e]=null;continue}r[e]="";const n=o.getSplitted(e);for(let t=0;t<n.length;t++){const i=n.getCanonical(t);a.has(i)||(a.set(i,String.fromCharCode(s)),s++),r[e]+=a.get(i)}}let h={};if(e===ue.Z.MONOMER_CHEMICAL_DISTANCE||e===ue.Z.NEEDLEMANN_WUNSCH){const t=Array.from(a.keys()),e=await(0,bt.A7)(t,n),i={};Object.entries(e.alphabetIndexes).forEach((([t,e])=>{i[a.get(t)]=e}));const o=r.reduce(((t,e)=>Math.max(t,e.length)),0);h={scoringMatrix:e.scoringMatrix,alphabetIndexes:i,maxLength:o}}return{seqList:r,options:h}}var pe=n(4954);function me(t){const e=s.divH([],{style:{gap:"10px"}}),n=s.divV([s.divText(t.seqCol.name),s.divText(t.activityCol.name)]);return n.style.fontWeight="bold",n.style.display="flex",n.style.justifyContent="space-between",e.append(n),t.points.forEach((n=>{const i=s.divText(t.activityCol.get(n).toFixed(2));i.style.display="flex",i.style.justifyContent="left",i.style.paddingLeft="30px",e.append(s.divV([s.divText(t.seqCol.get(n)),i]))})),e}function fe(t){const e=s.div();e.append(s.divText(t.seqCol.name,{style:{fontWeight:"bold"}}));const n=new Array(2);t.points.forEach(((e,i)=>{n[i]=t.activityCol.get(e)}));const i={},o=to.seqHelper.getSeqHandler(t.seqCol),r=o.defaultBiotype,a=ye(o.getSplitted(t.points[0]),o.getSplitted(t.points[1]),r,i);return e.append(s.div(a,{style:{width:"300px",overflow:"scroll"}})),e.append(be(i)),e.append(ge("Activity delta",Math.abs(n[0]-n[1]))),e.append(ge("Cliff",t.sali)),e}function ge(t,e){return s.divH([s.divText(`${t}: `,{style:{fontWeight:"bold",paddingRight:"5px"}}),s.divText(e.toFixed(2))],{style:{paddingTop:"10px"}})}function ye(t,e,n,i){const o=document.createElement("canvas"),r=o.getContext("2d");o.height=30;const s=to.monomerLib;return Xt(r,0,0,0,30,ot().count(0).take(t.length).map((e=>t.getCanonical(e))).toArray(),ot().count(0).take(e.length).map((t=>e.getCanonical(t))).toArray(),n,s,!0,i),o}function be(t){const e=s.div();if(Object.keys(t).length>0){const n=s.divV([]);n.append(s.divH([s.divText("Pos",{style:{fontWeight:"bold",width:"30px",borderBottom:"1px solid"}}),s.divText("Difference",{style:{fontWeight:"bold",borderBottom:"1px solid"}})]));for(const e of Object.keys(t))t[e].style.borderBottom="1px solid lightgray",n.append(s.divH([s.divText((parseInt(e)+1).toString(),{style:{width:"30px",borderBottom:"1px solid lightgray"}}),t[e]]));e.append(n)}return e}function ve(t,e){const n=a.Column.string("seq_diff",t.rowCount).init((n=>`${t.get(e[0],n)}#${t.get(e[1],n)}`));n.semType="MacromoleculeDifference",n.meta.units=t.col(e[0]).meta.units,n.setTag(gt.gp.separator,t.col(e[0]).getTag(gt.gp.separator)),t.columns.add(n);const i=t.plot.grid();return i.col(e[0]).visible=!1,i.col(e[1]).visible=!1,i}class we extends a.JsViewer{constructor(t,e){super(),this.name="",this.semType="",this.initialized=!1,this.gridSelect=!1,this.maxLimit=100,this.recomputeOnCurrentRowChange=!0,this.skipRecomputingProperies=[],this.debounceTimer=null,this.computeRequested=!1,this.renderPromise=Promise.resolve(),this.limit=this.int("limit",10,{min:1,max:this.maxLimit}),this.targetColumnName=this.string("targetColumnName",null,{...e?{semType:e}:{},nullable:!1}),this.name=t,this.semType=e}init(){this.initialized=!0}detach(){this.subs.forEach((t=>t.unsubscribe()))}async onTableAttached(){if(this.init(),this.dataFrame){this.subs.push(a.debounce(this.dataFrame.onRowsRemoved,50).subscribe((t=>this.render(!0))));const t="diversity"!==this.name;this.subs.push(a.debounce(this.dataFrame.onCurrentRowChanged,50).subscribe((e=>{this.gridSelect||this.render(t)}))),this.subs.push(a.debounce(this.dataFrame.selection.onChanged,50).subscribe((t=>this.render(!1)))),this.subs.push(a.debounce(s.onSizeChanged(this.root),50).subscribe((t=>this.render(!1)))),this.targetColumnName??(this.targetColumnName=this.dataFrame.columns.bySemType(this.semType).name),this.targetColumn=this.dataFrame.col(this.targetColumnName),this.getProperty("limit").fromOptions({min:1,max:this.maxLimit})}this.render()}onPropertyChanged(t){if(super.onPropertyChanged(t),this.initialized){if("targetColumnName"===t.name){const e=this.dataFrame.col(t.get(this));e.semType===this.semType&&(this.targetColumn=e)}this.debouncedRender()}}debouncedRender(t=!0){this.debounceTimer&&clearTimeout(this.debounceTimer),this.debounceTimer=setTimeout((()=>{this.render(t),this.debounceTimer=null}),100)}render(t=!0){this.renderPromise=this.renderPromise.then((async()=>{this.computeRequested=this.computeRequested||t,await this.renderInt(t)}))}async renderInt(t){}beforeRender(){return!(!this.initialized||!this.targetColumnName||this.dataFrame&&this.targetColumnName&&this.dataFrame.col(this.targetColumnName).semType!==this.semType&&(r.shell.error(`${this.targetColumnName} is not ${this.semType} type`),1))}}class Ce extends we{distanceMetric;fingerprint;metricsProperties=["distanceMetric","fingerprint"];fingerprintChoices=["Morgan","Pattern"];tags=[a.TAGS.UNITS,gt.gp.aligned,gt.gp.separator,gt.gp.alphabet,"cell.renderer"];preComputeDistanceMatrix=!1;constructor(t,e){super(t,e),this.fingerprint=this.string("fingerprint",this.fingerprintChoices[0],{choices:this.fingerprintChoices}),this.distanceMetric=this.string("distanceMetric",k.iS[0],{choices:k.iS})}async onTableAttached(){super.onTableAttached(),this.dataFrame&&(this.preComputeDistanceMatrix=this.dataFrame.rowCount<=22e3)}}const Ae={gapPenalty:1,matchScore:1,gapSymbol:wt.b9[wt.Hi.FASTA],localAlignment:!1};class Se extends Ce{seqHelper;cutoff;hotSearch;similarColumnLabel;sketchedMolecule="";curIdx=0;molCol=null;idxs=null;scores=null;gridSelect=!1;targetMoleculeIdx=0;computeCompleted=new h.Subject;distanceMatrixComputed=!1;mmDistanceMatrix;knn;kPrevNeighbors=0;demo;analysisGrid;subInited=!1;constructor(t,e){super("similarity",a.SEMTYPE.MACROMOLECULE),this.seqHelper=t,this.cutoff=this.float("cutoff",.01,{min:0,max:1}),this.hotSearch=this.bool("hotSearch",!0),this.similarColumnLabel=this.string("similarColumnLabel",null),this.demo=e}init(){this.hotSearch=!0,this.initialized=!0}async renderInt(t){if(this.beforeRender()&&this.targetColumn&&(this.curIdx=-1==this.dataFrame.currentRowIdx?0:this.dataFrame.currentRowIdx,t&&!this.gridSelect)){this.targetMoleculeIdx=(this.dataFrame.currentRowIdx??-1)<0?0:this.dataFrame.currentRowIdx,await this.computeByMM();const t=null!=this.similarColumnLabel?this.similarColumnLabel:`similar (${this.targetColumn})`;this.molCol=a.Column.string(t,this.idxs.length).init((t=>this.targetColumn?.get(this.idxs?.get(t)))),this.molCol.semType=a.SEMTYPE.MACROMOLECULE,this.tags.forEach((t=>this.molCol.setTag(t,this.targetColumn.getTag(t))));const e=a.DataFrame.fromColumns([this.idxs,this.molCol,this.scores]);await e.meta.detectSemanticTypes(),await r.data.detectSemanticTypes(e),this.molCol.temp["reference-sequence"]=this.targetColumn.get(this.targetMoleculeIdx),this.molCol.temp[".mm.cellRenderer.maxMonomerLength"]=4;let n=null;e.onCurrentRowChanged.subscribe((t=>{n&&clearTimeout(n),(e.currentRowIdx??-1)<0||(this.dataFrame.currentRowIdx=e.col("indexes").get(e.currentRowIdx),n=setTimeout((()=>{this.createPropertyPanel(e)}),300),this.gridSelect=!0)})),this.analysisGrid?(this.analysisGrid.dataFrame=e,this.analysisGrid.invalidate()):(this.analysisGrid=e.plot.grid(),(0,$t.Ku)(this.root,this.analysisGrid.root)),this.analysisGrid.col("indexes").visible=!1,(0,$t.Kd)(this.analysisGrid,this.molCol.name,450,30,!0);const i=this.idxs?.getRawData().findIndex((t=>t==this.targetMoleculeIdx));this.analysisGrid.cell("score",i).cell.value=null;const o=r.shell.tv;this.subInited||(o.grid.root.addEventListener("click",(t=>{this.gridSelect=!1})),this.subInited=!0),this.computeCompleted.next(!0)}}async computeByMM(){const t=this.targetColumn.length,e=Math.min(this.limit,t-1);if(!this.knn||this.kPrevNeighbors!==e){const n=(await de(this.targetColumn,ue.Z.LEVENSHTEIN)).seqList;this.kPrevNeighbors=e,this.knn=await(new F).getKNN(n,ue.Z.LEVENSHTEIN,Math.min(this.limit,t-1))}const n=new Array(e).fill(0).map(((t,e)=>({idx:this.knn.knnIndexes[this.targetMoleculeIdx][e],score:1-this.knn.knnDistances[this.targetMoleculeIdx][e]})));n.sort(((t,e)=>e.score-t.score)),n.unshift({idx:this.targetMoleculeIdx,score:a.FLOAT_NULL}),this.idxs=a.Column.int("indexes",e+1).init((t=>n[t].idx)),this.scores=a.Column.float("score",e+1).init((t=>n[t].score))}createPropertyPanel(t){const e=s.div(),n={},i=this.molCol?.name,o=t.col(i),a=this.seqHelper.getSeqHandler(this.targetColumn),l=this.seqHelper.getSeqHandler(o),c=a.getSplitted(this.targetMoleculeIdx),h=l.getSplitted(t.currentRowIdx),u=function(t,e,n={}){const i={...Ae,...n},o=t.length,r=e.length,s=Array(o+1).fill(0).map((()=>Array(r+1).fill(0)));let a=-9999,l=[1,1];for(let n=1;n<o+1;n++)for(let o=1;o<r+1;o++)s[n][o]=Math.max(0,s[n-1][o-1]+(t.getCanonical(n-1)===e.getCanonical(o-1)?i.matchScore:-i.matchScore),s[n-1][o]-i.gapPenalty,s[n][o-1]-i.gapPenalty),s[n][o]>=a&&(a=s[n][o],l=[n,o]);let c=i.localAlignment?l[0]:o,h=i.localAlignment?l[1]:r,u=new Array(0),d=new Array(0);for(;c>0&&h>0;){const n=Math.max(s[c-1][h-1],s[c-1][h],s[c][h-1]);s[c][h]==s[c-1][h-1]+i.matchScore&&n==s[c-1][h-1]?(u.push(t.getCanonical(c-1)),d.push(e.getCanonical(h-1)),c-=1,h-=1):s[c][h]==s[c-1][h]-i.gapPenalty?(d.push(i.gapSymbol),u.push(t.getCanonical(c-1)),c-=1):s[c][h]==s[c][h-1]-i.gapPenalty?(u.push(i.gapSymbol),d.push(e.getCanonical(h-1)),h-=1):(u.push(t.getCanonical(c-1)),d.push(e.getCanonical(h-1)),c-=1,h-=1)}u=[...ot().count(0).take(c).map((e=>t.getCanonical(e))),...u.reverse(),...i.localAlignment?ot().count(l[0]).take(o).map((e=>t.getCanonical(e))):[]],d=[...ot().count(0).take(h).map((t=>e.getCanonical(t))),...d.reverse(),...i.localAlignment?ot().count(l[1]).take(r).map((t=>e.getCanonical(t))):[]];const p=c,m=h;return p>m?d=[...new Array(p-m).fill(i.gapSymbol.valueOf()),...d]:u=[...new Array(m-p).fill(i.gapSymbol.valueOf()),...u],d.length>u.length?u.push(...new Array(d.length-u.length).fill(i.gapSymbol.valueOf())):d.push(...new Array(u.length-d.length).fill(i.gapSymbol.valueOf())),{seq1:u.join(""),seq2:d.join(""),seq1Splitted:new Ot.Mu(u,i.gapSymbol),seq2Splitted:new Ot.Mu(d,i.gapSymbol)}}(c,h),d=ye(u.seq1Splitted,u.seq2Splitted,l.defaultBiotype,n);e.append(s.div(d,{style:{width:"300px",overflow:"scroll"}})),c.length!==h.length&&e.append(s.divV([s.divText("Different sequence length:",{style:{fontWeight:"bold"}}),s.divText(`target: ${c.length} monomers`),s.divText(`selected: ${h.length} monomers`)],{style:{paddingBottom:"10px"}})),e.append(be(n));const p=s.accordion(),m=s.element("i");m.className="grok-icon svg-icon svg-view-layout",p.addTitle(s.span([m,s.label("Similarity search")])),p.addPane("Differences",(()=>e),!0),r.shell.o=p.root}}class xe extends Ce{seqHelper;diverseColumnLabel;renderMolIds=null;columnNames=[];computeCompleted=new h.Subject;constructor(t){super("diversity",a.SEMTYPE.MACROMOLECULE),this.seqHelper=t,this.diverseColumnLabel=this.string("diverseColumnLabel",null)}async renderInt(t){if(this.beforeRender()&&this.dataFrame&&t&&this.targetColumn){await this.computeByMM();const t=null!=this.diverseColumnLabel?this.diverseColumnLabel:`diverse (${this.targetColumnName})`,e=a.Column.string(t,this.renderMolIds.length).init((t=>this.targetColumn?.get(this.renderMolIds[t])));e.semType=a.SEMTYPE.MACROMOLECULE,this.tags.forEach((t=>e.setTag(t,this.targetColumn.getTag(t))));const n=a.DataFrame.fromColumns([e]);e.temp[".mm.cellRenderer.maxMonomerLength"]=4,n.onCurrentRowChanged.subscribe((t=>{this.dataFrame.currentRowIdx=this.renderMolIds[n.currentRowIdx]}));const i=n.plot.grid();(0,$t.Kd)(i,e.name,450,30),(0,$t.Ku)(this.root,i.root),this.computeCompleted.next(!0)}}async computeByMM(){const t=(await de(this.targetColumn,ue.Z.LEVENSHTEIN)).seqList,e=new G(!0,!1),n=await e.calc(t,ue.Z.LEVENSHTEIN);e.terminate();const i=this.targetColumn.length,o=(r=i,(t,e)=>r*t+e-Math.floor((t+2)*(t+1)/2));var r;this.renderMolIds=function(t,e,n){function i(t,e){let n=null,i=null;for(const o of t){const t=e(o);(null==i||t>i)&&(n=o,i=t)}return n}const o=[(s=t-1,Math.floor(function(t){return Math.random()*t}(s)))],r=new Set;var s;for(let e=0;e<t;++e)o.includes(e)||r.add(e);for(;o.length<e;){const t=i(r.values(),(t=>Math.min.apply(Math,o.map((function(e,i){return n(t,e)})))));null!=t&&(o.push(t),r.delete(t))}return o}(i,Math.min(i,this.limit),((t,e)=>this.targetColumn.isNone(t)||this.targetColumn.isNone(e)?0:n[o(t,e)]))}}var Ee,Te=n(5433),_e=n(3890),Me=n(1687);!function(t){t.TYPE="V2000",t[t.NUM_OF_HEADER_LINES=3]="NUM_OF_HEADER_LINES",t[t.NUM_OF_COUNTS_DIGITS=3]="NUM_OF_COUNTS_DIGITS",t[t.ATOM_TYPE_COL=4]="ATOM_TYPE_COL",t[t.FIRST_BONDED_ATOM_COL=1]="FIRST_BONDED_ATOM_COL",t[t.BOND_TYPE_COL=3]="BOND_TYPE_COL",t[t.RGP_SHIFT=8]="RGP_SHIFT",t[t.MAX_ATOM_COUNT=999]="MAX_ATOM_COUNT",t.RGP_LINE_START="M RGP",t.ATOM_ALIAS_LINE_START="A ",t.END="M END"}(Ee||(Ee={}));class Ie{constructor(t){this.init(t)}init(t){this.fileContent=t.replace(/\r/g,""),this._atomCount=void 0,this._atomTypes=void 0,this._bondCount=void 0,this._bondTypes=void 0,this.xyzAtomCoordinates=void 0,this._pairsOfBondedAtoms=void 0}get atomCount(){return void 0===this._atomCount&&this.setAtomAndBondCounts(),this._atomCount}get bondCount(){return void 0===this._bondCount&&this.setAtomAndBondCounts(),this._bondCount}get x(){var t;return null!==(t=this.xyzAtomCoordinates)&&void 0!==t||(this.xyzAtomCoordinates=this.parseAtomCoordinates()),this.xyzAtomCoordinates.x}get y(){var t;return null!==(t=this.xyzAtomCoordinates)&&void 0!==t||(this.xyzAtomCoordinates=this.parseAtomCoordinates()),this.xyzAtomCoordinates.y}get z(){var t;return null!==(t=this.xyzAtomCoordinates)&&void 0!==t||(this.xyzAtomCoordinates=this.parseAtomCoordinates()),this.xyzAtomCoordinates.z}get atomTypes(){var t;return null!==(t=this._atomTypes)&&void 0!==t||(this._atomTypes=this.parseAtomTypes()),this._atomTypes}get pairsOfBondedAtoms(){var t;return null!==(t=this._pairsOfBondedAtoms)&&void 0!==t||(this._pairsOfBondedAtoms=this.parseBondedAtomPairs()),this._pairsOfBondedAtoms}get bondTypes(){var t;return null!==(t=this._bondTypes)&&void 0!==t||(this._bondTypes=this.parseBondTypes()),this._bondTypes}setAtomAndBondCounts(){const{atomCount:t,bondCount:e}=this.parseAtomAndBondCounts();this._atomCount=t,this._bondCount=e}getNextColumnIdx(t){for(;!this.isWhitespace(t);)++t;for(;this.isWhitespace(t);)++t;return t}shiftIdxToSpecifiedColumn(t,e){let n=t;const i=this.isWhitespace(n)?e:e-1;for(let t=0;t<i;t++)n=this.getNextColumnIdx(n);return n}parseAtomTypes(){const t=this.atomCount,e=new Array(t);let n=this.getAtomBlockIdx();for(let i=0;i<t;i++)n=this.shiftIdxToAtomType(n),e[i]=this.parseAtomType(n),n=this.getNextLineIdx(n);return e}parseAtomCoordinates(){const t=new Float32Array(this.atomCount),e=new Float32Array(this.atomCount),n=new Float32Array(this.atomCount);let i=this.getAtomBlockIdx();for(let o=0;o<this.atomCount;o++){i=this.shiftIdxToXColumn(i);for(const r of[t,e,n])r[o]=this.parseFloatValue(i),i=this.getNextColumnIdx(i);i=this.getNextLineIdx(i)}return{x:t,y:e,z:n}}parseBondedAtomPairs(){const t=new Array(this.bondCount);let e=this.getBondBlockIdx();for(let n=0;n<this.bondCount;n++){e=this.shiftIdxToBondedAtomsPair(e);const i=new Uint16Array(2);i[0]=this.parseIntValue(e),e=this.getNextColumnIdx(e),i[1]=this.parseIntValue(e),t[n]=i,e=this.getNextLineIdx(e)}return t}parseBondTypes(){const t=this.bondCount,e=new Uint16Array(t);let n=this.getBondBlockIdx();for(let i=0;i<t;i++)n=this.shiftIdxToBondType(n),e[i]=this.parseIntValue(n),n=this.getNextLineIdx(n);return e}isWhitespace(t){const e=this.fileContent[t];return" "===e||"\t"===e}getNextLineIdx(t){return"\n"!==this.fileContent[t]?this.fileContent.indexOf("\n",t)+1:t+1}parseFloatValue(t){return this.parseNumericValue(parseFloat,t)}parseIntValue(t){return this.parseNumericValue(parseInt,t)}parseNumericValue(t,e){let n=e+1;for(;!this.isWhitespace(n);)++n;return t(this.fileContent.substring(e,n))}}class Le extends Ie{constructor(t){super(t),this.init(t)}init(t){super.init(t)}parseAtomType(t){let e=t,n=e;return this.isQuote(e)?(n=this.getNextIdenticalChar(e),e++):n=this.fileContent.indexOf(" ",n),this.fileContent.substring(e,n)}isQuote(t){const e=this.fileContent[t].charCodeAt(0);return 39===e||34===e}getNextIdenticalChar(t){const e=this.fileContent[t];return e?this.fileContent.indexOf(e,t+1):-1}isQuery(){return this.isQueryOrFragment(((t,e)=>{return 39===t||34===t||76===t&&!((n=this.fileContent.charCodeAt(e+1))>64&&n<91||n>96&&n<123);var n}))}isFragment(){return this.isQueryOrFragment((t=>82===t||42===t))}isQueryOrFragment(t){const e=this.atomCount;let n=this.getAtomBlockIdx();for(let i=0;i<e;i++){if(n=this.shiftIdxToAtomType(n),t(this.fileContent.charCodeAt(n),n))return!0;n=this.getNextLineIdx(n)}return!1}}class Ne extends Le{constructor(t){super(t)}getAtomLines(){const t=this.getAtomBlockIdx(),e=this.getBondBlockIdx();return this.fileContent.substring(t,e).split("\n").slice(0,this.atomCount)}getBondLines(){const t=this.getBondBlockIdx();return this.fileContent.substring(t).split("\n").slice(0,this.bondCount)}getRGroupIdToAtomicIdxMap(){const t=new Map,e=this.fileContent.split("\n");e.filter((t=>t.startsWith(Ee.RGP_LINE_START))).forEach((e=>{const n=this.getAtomIdxToRgpIdxList(e);for(const[e,i]of n){if(t.has(e))throw new Error(`R group ${e} is already in the map`);t.set(e,i)}}));const n=e.map(((t,e)=>{if(t.startsWith(Ee.ATOM_ALIAS_LINE_START))return e})).filter((t=>void 0!==t)),i=n.map((t=>e[t])),o=n.map((t=>e[t+1]));i.forEach(((e,n)=>{const i=parseInt(e.split(/\s+/)[1])-1,r=parseInt(o[n].substring(1));if(t.has(r))throw new Error(`R group ${r} is already in the map`);t.set(r,i)}));const r=this.getRGroupAtomicIndices().filter((e=>!Array.from(t.values()).includes(e)));if(0!==r.length)throw new Error(`Unaccounted R group indices: ${r}`);return t}getAtomIdxToRgpIdxList(t){const e=t.split(/\s+/).filter((t=>t)).slice(3).map((t=>parseInt(t))),n=new Array(e.length/2);for(let t=0;t<e.length;t+=2)n[t/2]=[e[t+1],e[t]-1];return n}getRGroupAtomicIndices(){return this.atomTypes.map(((t,e)=>{if(t.includes("R#"))return e})).filter((t=>void 0!==t))}static isValidMolfile(t){return-1!==t.indexOf(Ee.TYPE)&&-1!==t.indexOf(Ee.END)}shiftIdxToAtomType(t){return this.shiftIdxToSpecifiedColumn(t,Ee.ATOM_TYPE_COL)}getCountsLineIdx(){let t=0;for(let e=0;e<Ee.NUM_OF_HEADER_LINES;++e)t=this.getNextLineIdx(t);return t}getAtomBlockIdx(){let t=this.getCountsLineIdx();return t=this.getNextLineIdx(t),t}shiftIdxToXColumn(t){return this.getNextColumnIdx(t)}shiftIdxToBondedAtomsPair(t){return this.shiftIdxToSpecifiedColumn(t,Ee.FIRST_BONDED_ATOM_COL)}shiftIdxToBondType(t){return this.shiftIdxToSpecifiedColumn(t,Ee.BOND_TYPE_COL)}getBondBlockIdx(){let t=this.getAtomBlockIdx();for(let e=0;e<this.atomCount;e++)t=this.getNextLineIdx(t);return t}parseAtomAndBondCounts(){let t=this.getCountsLineIdx(),e=t+Ee.NUM_OF_COUNTS_DIGITS;const n=parseInt(this.fileContent.substring(t,e));return t=e,e+=Ee.NUM_OF_COUNTS_DIGITS,{atomCount:n,bondCount:parseInt(this.fileContent.substring(t,e))}}}class Pe extends Le{constructor(t){super(t),this.init(t)}getAtomLines(){const t=this.getAtomBlockIdx(),e=this.getBondBlockIdx();return this.fileContent.substring(t,e).split("\n").slice(0,this.atomCount)}getBondLines(){const t=this.getBondBlockIdx();return this.fileContent.substring(t).split("\n").slice(0,this.bondCount)}getRGroupIdToAtomicIdxMap(){const t=new Map;return this.getAtomLines().forEach(((e,n)=>{const i=e.match(/RGROUPS=\(([\d\s]+)\)/);if(i){const e=i[1].split(/\s+/).map((t=>parseInt(t)));if(e.length>2)throw new Error(`R group data ${e} has more than 2 elements`);const o=e[1];if(t.has(o))throw new Error(`R group ${o} is already in the map`);t.set(o,n)}})),t}shiftIdxToAtomType(t){return this.shiftIdxToSpecifiedColumn(t,4)}getCountsLineIdx(){return this.fileContent.indexOf("M V30 COUNTS ")}getAtomBlockIdx(){let t=this.fileContent.indexOf("M V30 BEGIN ATOM");return t=this.getNextLineIdx(t),t}shiftIdxToXColumn(t){let e=this.shiftIdxToAtomType(t);return this.isQuote(e)?(e=this.getNextIdenticalChar(e),e=this.getNextColumnIdx(e),e):this.shiftIdxToSpecifiedColumn(t,5)}shiftIdxToBondedAtomsPair(t){return this.shiftIdxToSpecifiedColumn(t,5)}shiftIdxToBondType(t){return this.shiftIdxToSpecifiedColumn(t,4)}getBondBlockIdx(){return this.getNextLineIdx(this.fileContent.indexOf("M V30 BEGIN BOND"))}static isValidMolfile(t){return-1!==t.indexOf("V3000")&&-1!==t.indexOf("M END")}parseAtomAndBondCounts(){let t=this.fileContent.indexOf("M V30 COUNTS ")+14,e=this.fileContent.indexOf(" ",t+1);const n=parseInt(this.fileContent.substring(t,e));return t=e+1,e=this.fileContent.indexOf(" ",t+1),{atomCount:n,bondCount:parseInt(this.fileContent.substring(t,e))}}}class $e{constructor(){}static getInstance(t){if($e.isMolfileV2K(t))return new Ne(t);if($e.isMolfileV3K(t))return new Pe(t);throw new Error("Malformed molfile")}static isMolfileV2K(t){return Ne.isValidMolfile(t)}static isMolfileV3K(t){return Pe.isValidMolfile(t)}}var Re=n(6197),ke=n(9124),Oe=n(3527);class He{biotype;id;n;m;type;mt;smiles;get issmiles(){return!!this.smiles}at={R1:"H",R2:"H",R3:"H",R4:"H",R5:"H",R6:"H",R7:"H",R8:"H",R9:"H"};get rs(){return Object.keys(this.at).length}constructor(t,e,n="missing",i=void 0,o=void 0,r=void 0,s){if(this.biotype=t,this.id=e,this.n=n,this.m=i,this.type=o,this.mt=r,this.smiles=s,!this.id)throw new Error("Invalid arg undefined [id].")}static objCounter=-1;objId=++He.objCounter;className="WebEditorMonomerDummy";toLog(){return`Helm: ${this.className}<${this.objId}>`}}class Ge extends He{backgroundcolor="#FFFFFF";linecolor="#808080";textcolor="#808080";constructor(t){super(t,"*","gap")}}class Fe extends He{backgroundcolor="#808080";linecolor="#000000";textcolor="#000000";constructor(t,e){super(t,e,"ambiguous")}}class De extends He{backgroundcolor="#FF4444";linecolor="#800000";textcolor="#FFFFFF";constructor(t,e,n){super(t,e,"missing"),n&&(this.backgroundcolor="#C0C0C0",this.linecolor="#404040",this.textcolor="#404040")}}class Be extends He{backgroundcolor="#FFFF44";linecolor="#800000";textcolor="#000000";constructor(t,e){super(t,e,"broken")}}class Ve{id;m;n;na;type;mt;at;smiles;get rs(){return Object.keys(this.at).length}get issmiles(){return!!this.smiles}linecolor;backgroundcolor;textcolor;constructor(t,e,n,i,o,r,s,a){this.id=t,this.m=e,this.n=n,this.na=i,this.type=o,this.mt=r,this.at=s,this.smiles=a}static fromMonomer(t,e,n){let i={};const o=e.symbol,r=e.smiles;if(e.rgroups.length>0)e.rgroups.forEach((t=>{i[t.label]=t.capGroupName}));else{if(!r){if(e.lib)return new Be(t,o);throw new Error("Unexpected missing monomer without .lib")}i=n.getRS(r)}const s=new Ve(e.symbol,e.molfile,e.name,e.naturalAnalog,e.polymerType,e.monomerType,i),a=n.getMonomerColors(t,e.symbol);return a&&(s.textcolor=a?.textcolor,s.linecolor=a?.linecolor,s.backgroundcolor=a?.backgroundcolor),s}}const We={[Ft.o.BASE]:{A:"#20E040",G:"#040404",T:"#FF8080",C:"#2060FF",U:"#FF8080"},[Ft.o.NUCLEOTIDE]:{A:"#20E040",G:"#040404",T:"#FF8080",C:"#2060FF",U:"#FF8080"},[Ft.o.LINKER]:{P:"#9aa5e1",p:"#9aa5e1"},[Ft.o.SUGAR]:{R:"#7a85c1",r:"#7a85c1"},[Ft.o.AA]:{A:"rgb(44,160,44)",R:"rgb(23,190,207)",N:"rgb(235,137,70)",D:"rgb(31,119,180)",C:"rgb(188,189,34)",E:"rgb(31, 120, 150)",Q:"rgb(205, 111, 71)",G:"rgb(214,39,40)",H:"rgb(158,218,229)",I:"rgb(23,103,57)",L:"rgb(30,110,96)",K:"rgb(108, 218, 229)",M:"rgb(60,131,95)",F:"rgb(24,110,79)",P:"rgb(255,152,150)",S:"rgb(255,187,120)",T:"rgb(245,167,100)",W:"rgb(182, 223, 138)",Y:"rgb(152,223,138)",V:"rgb(74,160,74)"},[Ft.o.CHEM]:{R:"#eeeeee"},[Ft.o.BLOB]:{B:"#999999",G:"#e2e2e2"}},Ue=/[\w()]+/,je=RegExp(String.raw`\(${Ue}(,${Ue})+\)`),qe=t=>{const e=s.canvas(250,250);return r.chem.canvasMol(0,0,250,250,e,t),e},ze=new Oe.Mi([255,255,255]),Ye=new Oe.Mi([0,0,0]),Ke=.7*(0,z.wQ)(ze);class Ze{_monomers;source;_isEmpty;get isEmpty(){return this._isEmpty}_onChanged=new h.Subject;get onChanged(){return this._onChanged}constructor(t,e){this._monomers=t,this.source=e,this._isEmpty=!this._monomers||0===Object.keys(this._monomers).length||Object.entries(this._monomers).every((([t,e])=>0===Object.keys(e).length));for(const[t,e]of Object.entries(this._monomers))for(const[t,n]of Object.entries(e))n.lib=this}getMonomerSymbolsByType(t){return Object.keys(this._monomers[t])}addMissingMonomer(t,e){let n=this._monomers[t];n||(n=this._monomers[t]={});let i=e;return e==wt._S||e===wt.b9[wt.Hi.HELM]?i="Gap":("PEPTIDE"===t&&"X"===e||"RNA"===t&&"N"===e)&&(i="Any"),n[e]={symbol:e,name:i,molfile:"",author:"MISSING",id:-1,rgroups:ot().count(1).take(9).map((t=>({capGroupSmiles:"",alternateId:"",capGroupName:"",label:`R${t.toString()}`}))).toArray(),smiles:"",polymerType:t,monomerType:void 0,createDate:null}}getMonomer(t,e){let n=e;"RNA"==t&&"R"==n&&(n="r"),"RNA"==t&&"P"==n&&(n="p");let i=null;if(t){const e=this._monomers[t];i=e?e[n]:null}else{to.logger.warning(`Bio: MonomerLib.getMonomer() symbol '${e}', polymerType not specified.`);for(const[t,e]of Object.entries(this._monomers))if(i=e[n],i)break}return i}getWebEditorMonomer(t,e){const[n,i]=(0,ke.fA)(t,e),o=(0,Re.Y)(n);let r=this.getMonomer(o,i);if(r&&n==Ft.o.LINKER&&2!=r.rgroups.length)return null;if(r&&n==Ft.o.SUGAR&&3!=r.rgroups.length)return null;r||(r=this.addMissingMonomer(o,i));let s=r.wem??null;return s||(i===wt._S||"*"==i?s=r.wem=new Ge(n):n===Ft.o.NUCLEOTIDE&&"N"===i||n===Ft.o.AA&&"X"===i||(Ft.o.CHEM,0)||je.test(i)?s=r.wem=new Fe(n,i):r.lib||(s=r.wem=new De(n,i,this.isEmpty)),s||(s=r.wem=Ve.fromMonomer(n,r,this))),s}getTooltip(t,e){const n=(0,Re.Y)(t),i=s.div([],{classes:"ui-form ui-tooltip"}),o=this.getWebEditorMonomer(t,e),r=this.getMonomer(n,e);if(r){const t=r.symbol,[e,n,a]=(r.name,o?[o.textcolor,o.backgroundcolor,o.linecolor]:["#202020","#A0A0A0","#202020"]);let l;if(i.append(s.divH([s.div([t],{style:{textWrap:"nowrap",marginLeft:"4px",marginRight:"4px",color:e,backgroundColor:n,borderColor:a,borderWidth:"1px",borderStyle:"solid",borderRadius:"2px",padding:"3px",minWidth:"24px",textAlign:"center"}}),s.div([r.name],{style:{padding:"4px"}})],{style:{display:"flex",flexDirection:"row",justifyContent:"left"}})),l=r.molfile?qe(r.molfile):r.smiles?s.divV([qe(r.smiles),s.divText("from smiles",{style:{fontSize:"smaller"}})]):s.divText("No structure",{style:{margin:"6px"}}),i.append(s.div(l,{style:{display:"flex",flexDirection:"row",justifyContent:"center",margin:"6px"}})),r.symbol!=wt._S){let t=r.lib?.source;t?(t.endsWith(".json")&&(t=t.substring(0,t.length-5)),t=t.replace(/_/g," ").replace(/-/g," ").replace(/([a-z])([a-z])([A-Z])/g,"$1$2 $3"),i.append(s.divText(t))):i.append(s.divText("Missed in libraries"))}}else i.append(s.divV([s.divText(`Monomer '${e}' of type '${n}' not found.`),s.divText("Open the Context Panel, then expand Manage Libraries")]));return i}getMonomerTextColor(t,e){const n=this.getMonomerColors(t,e),i=t=>{const e=/rgb\(\s*(\d+)\s*,\s*(\d+)\s*,\s*(\d+)\s*\)/.exec(t);if(e)return[parseInt(e[1]),parseInt(e[2]),parseInt(e[3])];const n=a.Color.fromHtml(t);return[a.Color.r(n),a.Color.g(n),a.Color.b(n)]},o=i(n.textcolor),r=new Oe.Mi([...o.map((t=>t+1))]),s=(0,z.KE)(r,ze)/((0,z.wQ)(r)*(0,z.wQ)(ze)),l=i(n.backgroundcolor),c=new Oe.Mi([...l.map((t=>t+.01))]);let h;h=(0,z.KE)(c,ze)/((0,z.wQ)(c)*(0,z.wQ)(ze))<s?l:o;let u=new Oe.Mi(h);const d=(0,z.wQ)(u);return d>Ke&&(u=(0,z.dC)(Ye,u,Ke/d)),`rgb(${u[0]}, ${u[1]}, ${u[2]})`}getMonomerColors(t,e){const n="default";let i=n;const o=(0,Re.Y)(t),r=this.getMonomer(o,e);let s;if(r){if(r.meta&&r.meta.colors){const t=r.meta.colors;n in t||(i="default"),s=t[i]}if(!s){const e=We[t],n=e?.[r.symbol];n&&(s={textColor:a.Color.toHtml(a.Color.getContrastColor(a.Color.fromHtml(n))),lineColor:"#202020",backgroundColor:n})}const e=r.naturalAnalog;if(!s&&e)return this.getMonomerColors(t,e)}return s||(s={textColor:"#202020",lineColor:"#202020",backgroundColor:"#A0A0A0"}),{textcolor:s.text??s.textColor,linecolor:s.line??s.lineColor,backgroundcolor:s.background??s.backgroundColor}}getRS(t){const e=t.match(/(?<=\[)[^\][]*(?=])/gm),n={};let i,o="";if(e)for(let t=0;t<e.length;t++)if(null!=e[t]&&/\d/.test(e[t])){i=e[t][e[t].length-1],e[t]=e[t].replace(/[0-9]/g,"");for(let n=0;n<e[t].length;n++)":"!=e[t][n]&&(o+=e[t][n]);n["R"+i]=o,o=""}return n}}var Xe=n(5488),Je={};Je.styleTagTransform=A(),Je.setAttributes=b(),Je.insert=g().bind(null,"head"),Je.domAPI=m(),Je.insertStyleElement=w(),d()(Xe.A,Je),Xe.A&&Xe.A.locals&&Xe.A.locals;class Qe extends Ze{error;_duplicateMonomers={};get duplicateMonomers(){return this._duplicateMonomers}_duplicatesHandled=!0;get duplicatesHandled(){return this._duplicatesHandled}duplicatesNotified=!1;constructor(t,e,n=void 0){super(t,e),this.error=n}toJSON(){const t=[];for(const e of Object.values(this._monomers))for(const n of Object.values(e))t.push({...n,lib:void 0,wem:void 0});return t}getMonomer(t,e){let n=e;"RNA"==t&&"R"==n&&(n="r"),"RNA"==t&&"P"==n&&(n="p");let i=null;if(t){const e=this._monomers[t];i=e?.[n]??null}else{to.logger.warning(`Bio: MonomerLib.getMonomer() symbol '${e}', polymerType not specified.`);for(const[t,e]of Object.entries(this._monomers))if(i=e[n],i)break}return i}_monomerSets=null;getMonomerSet(t){const e=(0,Re.Y)(t);if(this._monomerSets||(this._monomerSets={}),!(t in this._monomerSets))for(const[t,n]of Object.entries(this._monomers[e]));return this._monomerSets[t]}getPolymerTypes(){return Object.keys(this._monomers)}getMonomerMolsByPolymerType(t){const e={};return Object.keys(this._monomers[t]??{}).forEach((n=>{e[n]=this._monomers[t][n].molfile})),e}getMonomerSymbolsByRGroup(t,e,n){let i=this.getMonomerSymbolsByType(e).map((t=>this.getMonomer(e,t)));return i=i.filter((t=>null!==t)),0===i.length?[]:(i=i.filter((e=>{if(!e?.rgroups)return!1;let n=e?.rgroups.length>=t;var i;return i=$e.getInstance(e.molfile).atomTypes,i.map(((t,e)=>"R#"===t?e:-1)).filter((t=>-1!==t)),n&&=!0,n})),i.map((t=>t?.symbol)))}_updateLibInt(t){const e=t.getPolymerTypes(),n=this.getPolymerTypes();e.forEach((e=>{n.includes(e)||(this._monomers[e]={}),t.getMonomerSymbolsByType(e).forEach((n=>{this._monomers[e][n]&&(this._duplicateMonomers[e]??={},this._duplicateMonomers[e][n]??=[this._monomers[e][n]],this._duplicateMonomers[e][n].push(t.getMonomer(e,n))),this._monomers[e][n]=t.getMonomer(e,n)}))})),this._isEmpty=this.isEmpty&&t.isEmpty}updateLibs(t,e=!1){e&&(this._monomers={},this._isEmpty=!0),this._duplicateMonomers={};for(const e of t)e.error||this._updateLibInt(e);Object.entries(this.duplicateMonomers).length>0?(0,Nt.ub)().then((t=>{this.assignDuplicatePreferences(t)})):this._duplicatesHandled=!0,this._onChanged.next()}assignDuplicatePreferences(t){let e=!0;for(const n in this.duplicateMonomers)for(const i in this.duplicateMonomers[n])if(t.duplicateMonomerPreferences?.[n]?.[i]){const o=t.duplicateMonomerPreferences[n][i],r=this.duplicateMonomers[n][i].find((t=>t.lib?.source===o));r?this._monomers[n][i]=r:e=!1}else e=!1;return this._duplicatesHandled=e,e}clear(){this._monomers={},this._onChanged.next()}getSummaryObj(){const t={},e=this.getPolymerTypes();for(const n of e)t[n]=this.getMonomerSymbolsByType(n).length;return t}getSummaryDf(){const t=this.getPolymerTypes(),e=new Array(t.length);for(const[n,i]of ot().enumerate(t))e[i]=this.getMonomerSymbolsByType(n).length;return a.DataFrame.fromColumns([a.Column.fromStrings("polymerType",t),a.Column.fromList(a.COLUMN_TYPE.INT,"count",e)])}getSummary(){const t=this.getPolymerTypes();return 0==t.length?"empty":t.map((t=>`${t} ${this.getMonomerSymbolsByType(t).length}`)).join("\n")}static overrideCounter=0;override(t,e){return new tn(t,`override: ${++Qe.overrideCounter}, ${e}`,this)}}class tn extends Ze{data;base;constructor(t,e,n){super(t,e),this.data=t,this.base=n}get onChanged(){return this.base.onChanged}getMonomerSymbolsByType(t){const e=this.base.getMonomerSymbolsByType(t);for(const n of Object.keys(this.data[t]??{}))e.includes(n)||e.push(n);return e}addMissingMonomer(t,e){return this.base.addMissingMonomer(t,e)}getMonomer(t,e){const n=this.data[t]?.[e];return n??this.base.getMonomer(t,e)}}class en{monomerLib;symbol;polymerType;monomerType;monomerLinks;monomers;error=null;constructor(t,e,n,i,o){this.monomerLib=t,this.symbol=e,this.polymerType=n,this.monomerType=i,this.monomerLinks=o;try{this.monomers=this.monomerLinks.map((t=>{const n=this.monomerLib.getMonomer(this.polymerType,t.symbol);if(!n)throw new Error("Monomer not found: ");if(n.lib?.source!=t.source)throw new Error(`Monomer '${e}' found in different library.`);return n}))}catch(t){const[e,n]=(0,Ct.AP)(t);this.error=e,this.monomers=[]}}}class nn{description;placeholders;source;error;constructor(t,e,n=void 0,i=void 0){this.description=t,this.placeholders=e,this.source=n,this.error=i}updateSets(t,e=!1){e&&(this.placeholders=[]);for(const e of t)e.error||this._updateSetInt(e)}_updateSetInt(t){for(const e of t.placeholders)this.placeholders.push(e)}}var on=n(7433),rn=n.n(on),sn=n(1913),an=n.n(sn);class ln{helmMonomerSchema;validateMonomerSchema;constructor(t){this.helmMonomerSchema=t;const e=new(rn())({allErrors:!0,strictTuples:!1,allowUnionTypes:!0});an()(e),this.validateMonomerSchema=e.compile(this.helmMonomerSchema)}validateFile(t,e){const n=this.parseJson(t,e);return null!==n&&(Array.isArray(n)?this.validateJsonContent(n,e):(console.warn(`Bio: Monomer Library File Validator file '${e}': Invalid JSON format: The file must contain an array of monomers.`),!1))}parseJson(t,e){try{return JSON.parse(t)}catch(t){return console.error(`Bio: Monomer Library File Validator file '${e}': Invalid JSON format:`,t),null}}validateJsonContent(t,e){let n=!0;const i=new Set;for(const o of t){const t=o.symbol??o.id??o.name??"#N/A";if(n=this.validateMonomerSchema(o),!n){console.warn(`Bio: Monomer Library File Validator file ${e}, monomer '${t}' violating JSON schema:`,o,"\nError reason: ",JSON.stringify(this.validateMonomerSchema.errors??{}),`\nThere may be other errors in ${e} since the validation is stopped after the first error.`," Please, verify that the monomer library file satisfies the JSON schema");break}const r=`${o.polymerType??""}-${t}`;i.has(r)&&console.warn(`Bio: Monomer Library File Validator file ${e}, monomer '${t}' is duplicated.`,"Please, verify that the monomer library file does not contain duplicated monomer symbols."),i.add(r)}return n}}var cn=n(8604);class hn{fileValidator;libHelper;eventManager;logger;filesPromise=Promise.resolve();initializedPromise=Promise.resolve();constructor(t,e,n,i){let o;this.fileValidator=t,this.libHelper=e,this.eventManager=n,this.logger=i;let r=!1;this.initializedPromise=Promise.race([a.delay(1e3),new Promise((t=>o=t))]),this.eventManager.updateValidLibraryFileListRequested$.subscribe((()=>{this.updateValidLibList().then((()=>{})),r||(r=!0,o())})),this.eventManager.updateValidSetFileListRequested$.subscribe((()=>{this.updateValidSetList().then((()=>{}))}))}static objCounter=-1;objId=++hn.objCounter;toLog(){return`MonomerLibFileManager<${this.objId}>`}static async create(t,e,n){const i=await r.dapi.files.readAsText(cn.gt),o=JSON.parse(i),s=new ln(o);return new hn(s,t,e,n)}async addLibraryFile(t,e,n=!0){try{if(await r.dapi.files.exists(cn.so+`${e}`))return void r.shell.error(`File ${e} already exists`);await this.validateAgainstHELM(t,e),await r.dapi.files.writeAsText(cn.so+`${e}`,t),await this.updateValidLibList(),await r.dapi.files.exists(cn.so+`${e}`)?r.shell.info(`Added ${e} HELM library`):r.shell.error(`Failed to add ${e} library`)}catch(t){console.error(t),r.shell.error(`Failed to add ${e} library`)}}async deleteLibraryFile(t){try{await r.dapi.files.delete(cn.so+`${t}`),await this.updateValidLibList(),r.shell.info(`Deleted ${t} library`)}catch(e){console.error(e),await r.dapi.files.exists(cn.so+`${t}`)?r.shell.error(`Failed to delete ${t} library`):r.shell.warning(`File ${t} already deleted, refresh the list`)}}async loadLibraryFromFile(t,e){let n=[];const i=new a.FileSource(t),o=await i.readAsText(e);n=JSON.parse(o);const r={},s=[];return n.forEach((t=>{const e=t.polymerType,n=t.symbol;s.includes(e)||(r[e]={},s.push(e)),r[e][n]=t})),new Qe(r,e)}async loadSetFromFile(t,e,n){let i={};const o=new a.FileSource(e),r=await o.readAsText(n);i=JSON.parse(r);const s=i.description,l=Object.entries(i.placeholders).map((([e,n])=>{const i=e,o=n.polymerType,r=n.monomerType,s=n.set;return new en(t,i,o,r,s)}));return new nn(s,l)}getValidLibraryPaths(){return this.eventManager.getValidLibPathList()}getValidSetPaths(){return this.eventManager.getValidSetPathList()}async getValidLibraryPathsAsynchronously(){return await this.eventManager.getValidLibraryPathsAsynchronously()}async updateValidLibList(){const t=`${this.toLog()}.updateValidLibList()`;return this.logger.debug(`${t}, start`),this.filesPromise=this.filesPromise.then((async()=>{this.logger.debug(`${t}, IN`);const e=[],n=await this.getLibFileListAtLocation();if(!this.libListHasChanged(n))return void this.logger.debug(`${t}, end, not changed`);for(const t of n){if(!t.endsWith(".json")){e.push(t);continue}const n=await r.dapi.files.readAsText(cn.so+`${t}`);this.isValidHELMLibrary(n,t)||e.push(t)}const i=n.filter((t=>!e.includes(t)));if(this.libListHasChanged(i)&&(this.eventManager.changeValidLibPathList(i),await this.libHelper.loadMonomerLib(!0)),i.some((t=>!t.endsWith(".json")))&&this.logger.warning(`Wrong validation: ${i}`),e.length>0){const t=`Invalid monomer library files in ${cn.so}, consider fixing or removing them: ${e.join(", ")}`;this.logger.warning(t)}this.logger.debug(`${t}, OUT`)})),this.logger.debug(`${t}, end`),this.filesPromise}async updateValidSetList(){const t=`${this.toLog()}.updateValidSetList()`;return to.logger.debug(`${t}, start`),this.filesPromise=this.filesPromise.then((async()=>{to.logger.debug(`${t}, IN`);const e=[],n=await this.getSetFileListAtLocation();if(!this.setListHasChanged(n))return void to.logger.debug(`${t}, end, not changed`);for(const t of n)t.endsWith(".json")?await r.dapi.files.readAsText(cn.Es+`${t}`):e.push(t);const i=n.filter((t=>!e.includes(t)));this.setListHasChanged(i)&&(this.eventManager.changeValidSetPathList(i),this.libHelper.loadMonomerSets(!0)),to.logger.debug(`${t}, OUT`)})),to.logger.debug(`${t}, end`),this.filesPromise}libListHasChanged(t){const e=this.eventManager.getValidLibPathList();return t.length!==e.length||t.some(((t,n)=>t!==e[n]))}setListHasChanged(t){const e=this.eventManager.getValidSetPathList();return t.length!==e.length||t.some(((t,n)=>t!==e[n]))}async validateAgainstHELM(t,e){if(!this.isValidHELMLibrary(t,e))throw new Error(`File ${e} does not satisfy HELM standard`)}isValidHELMLibrary(t,e){return this.fileValidator.validateFile(t,e)}async getLibFileListAtLocation(){const t=`${this.toLog()}.getLibFileListAtLocation()`;this.logger.debug(`${t}, start`);const e=await r.dapi.files.list(cn.so).then((t=>t.filter((t=>t.isFile)).map((t=>t.fullPath)))),n=[];return n.push(...e),n.map((t=>t.substring(cn.so.length)))}async getSetFileListAtLocation(){const t=`${this.toLog()}.getSetFileListAtLocation()`;this.logger.debug(`${t}, start`);const e=await r.dapi.files.list(cn.Es).then((t=>t.map((t=>t.fullPath)))),n=[];return n.push(...e),n.map((t=>t.substring(cn.Es.length)))}}class un{constructor(){}static _instance;static getInstance(){return un._instance||(un._instance=new un),un._instance}_libFilesUpdateSubject$=new h.BehaviorSubject([]);_setFilesUpdateSubject$=new h.BehaviorSubject([]);_addLibraryFilesSubject$=new h.Subject;_librarySelectionSubject$=new h.Subject;getValidLibPathList(){return this._libFilesUpdateSubject$.getValue()}getValidSetPathList(){return this._setFilesUpdateSubject$.getValue()}async getValidLibraryPathsAsynchronously(){return new Promise((t=>{const e=this._libFilesUpdateSubject$.pipe((0,R.skip)(1)).subscribe((n=>{t(n),e.unsubscribe()}))}))}changeValidLibPathList(t){this._libFilesUpdateSubject$.next(t)}changeValidSetPathList(t){this._setFilesUpdateSubject$.next(t)}get updateUIControlsRequested$(){return this._libFilesUpdateSubject$.pipe()}get updateValidLibraryFileListRequested$(){return this._libFilesUpdateSubject$.pipe()}get updateValidSetFileListRequested$(){return this._setFilesUpdateSubject$.pipe()}get addLibraryFileRequested$(){return this._addLibraryFilesSubject$.pipe()}addLibraryFile(){this._addLibraryFilesSubject$.next()}get librarySelectionRequested$(){return this._librarySelectionSubject$}updateLibrarySelectionStatus(t,e){this._librarySelectionSubject$.next([t,e])}}class dn{logger;_monomerLib=new Qe({},"MAIN");_monomerSets=new nn("MAIN",[]);_initialLoadCompleted=!1;get initialLoadCompleted(){return this._initialLoadCompleted}_eventManager;get eventManager(){return this._eventManager}async awaitLoaded(t=1/0){return t=t===1/0?6e4:t,await Promise.race([(async()=>{const t=await this.getFileManager();return await t.filesPromise,!0})(),(async()=>(await(0,te.cb)(t),!1))()]).then((e=>{if(!e)throw new Error(`Loading monomer libraries timeout ${t} ms.`)}))}constructor(t){this.logger=t}static objCounter=-1;objId=(()=>{if(++dn.objCounter>0)throw new Error("MonomerLibManager MUST be a singleton.");return dn.objCounter})();toLog(){return`MonomerLibManager<${this.objId}>`}getMonomerLib(){return this._monomerLib}getBioLib(){return this.getMonomerLib()}getMonomerSets(){return this._monomerSets}get duplicateMonomers(){return this._monomerLib.duplicateMonomers}get duplicatesHandled(){return this._monomerLib.duplicatesHandled}assignDuplicatePreferances(t){this._monomerLib.assignDuplicatePreferences(t)}_fileManagerPromise;async getFileManager(){return void 0===this._fileManagerPromise&&(this._fileManagerPromise=(async()=>{const t=await hn.create(this,this._eventManager,this.logger);return await t.initializedPromise,t})()),this._fileManagerPromise}loadLibrariesPromise=Promise.resolve();async loadMonomerLib(t=!1){const e=`${this.toLog()}.loadMonomerLib()`;return this.logger.debug(`${e}, start`),this.loadLibrariesPromise=this.loadLibrariesPromise.then((async()=>{this.logger.debug(`${e}, IN`);const n=a.TaskBarProgressIndicator.create("Loading monomers ...");try{const[[e],i]=await Promise.all([await this.getFileManager().then((t=>[t.getValidLibraryPaths()])),(0,Nt.ub)()]),o=e.filter((t=>{const e=!i.exclude.includes(t),n=0===i.explicit.length||i.explicit.includes(t);return e&&n}));let r=0;const s=o.length,[a]=await Promise.all([Promise.all(o.map((t=>this.readLibrary(cn.so,t).catch((e=>{const n=`Loading monomers from '${t}' error: ${e instanceof Error?e.message:e.toString()}`;return new Qe({},t,n)})).finally((()=>{n.update(Math.round(100*++r/s),`Loading monomers ${r}/${s}`)})))))]);this._monomerLib.updateLibs(a,t),this._initialLoadCompleted=!0}catch(t){const e=`Loading monomer libraries error: ${t instanceof Error?t.message:t.toString()}`;r.shell.warning(e);const n=t instanceof Error?t.stack:void 0;this.logger.error(e,void 0,n)}finally{n.close(),this.logger.debug(`${e}, OUT`)}})),this.logger.debug(`${e}, end`),this.loadLibrariesPromise}async loadLibraries(t){return this.loadMonomerLib(t)}loadSetsPromise=Promise.resolve();async loadMonomerSets(t=!1){const e=`${this.toLog()}.loadMonomerSets()`;return this.logger.debug(`${e}, start`),this.loadSetsPromise=this.loadSetsPromise.then((async()=>{this.logger.debug(`${e}, IN`);const t=a.TaskBarProgressIndicator.create("Loading monomer sets ...");try{const[[e]]=await Promise.all([await this.getFileManager().then((t=>[t.getValidSetPaths()]))]),n=e.filter((t=>!0));let i=0;const o=n.length,[r]=await Promise.all([Promise.all(n.map((e=>this.readSet(cn.Es,e).catch((t=>{const n=`Loading monomer sets from '${e}' error: ${t instanceof Error?t.message:t.toString()}`;return new nn("Broken monomer set",[],e,n)})).finally((()=>{t.update(Math.round(100*++i/o),`Loading monomers ${i}/${o}`)})))))]);this._monomerSets.updateSets(r)}catch(t){const e=`Loading monomer sets error: ${t instanceof Error?t.message:t.toString()}`;r.shell.warning(e);const n=t instanceof Error?t.stack:void 0;this.logger.error(e,void 0,n)}finally{t.close(),this.logger.debug(`${e}, OUT`)}})),this.logger.debug(`${e}, end`),this.loadSetsPromise}async readLibrary(t,e){const n=await this.getFileManager();return await n.loadLibraryFromFile(t,e)}async readSet(t,e){const n=await this.getFileManager();return await n.loadSetFromFile(this._monomerLib,t,e)}async selectSpecifiedLibraries(t){const e=await this.getInvalidFileNames(t);if(e.length>0)throw new Error(`Cannot select libraries ${e}: no such library in the list`);const n=await(0,Nt.ub)();n.exclude=(await this.getFileManager()).getValidLibraryPaths().filter((e=>!t.includes(e))),await(0,Nt.Eu)(n)}async getInvalidFileNames(t){const e=(await this.getFileManager()).getValidLibraryPaths();return t.filter((t=>!e.includes(t)))}async loadMonomerLibForTests(){await(0,Nt.Eu)(cn.G3),await this.awaitLoaded(1e4),await this.loadMonomerLib(!0)}static async getInstance(){let t=window.$monomerLibHelperPromise;return null==t&&(t=window.$monomerLibHelperPromise=(async()=>{const t=new dn(to.logger);return t._eventManager=un.getInstance(),t})()),t}}var pn=n(1757),mn=n.n(pn),fn=n(3017),gn={};gn.styleTagTransform=A(),gn.setAttributes=b(),gn.insert=g().bind(null,"head"),gn.domAPI=m(),gn.insertStyleElement=w(),d()(fn.A,gn),fn.A&&fn.A.locals&&fn.A.locals;var yn=n(3151);class bn{constructor(t,e=[],n={}){this.onItemChanged=new h.Subject,this.onAddingItemChanged=new h.Subject,this.onItemAdded=new h.Subject,this.onItemRemoved=new h.Subject,this.options={removeButtonTooltip:"Remove item",addButtonTooltip:"Add item",allowAdd:!0,allowRemove:!0},this.addingItemInputs={},this.properties=t,this.options=Object.assign(Object.assign({},this.options),n),this._root=s.divV([],{style:{display:"grid",gridTemplateColumns:`repeat(${this.properties.length}, 1fr)`,alignItems:"center",gap:"12px"},classes:"ui-items-grid"}),this._items=e,this.render()}get root(){return this._root}get items(){return this._items}set items(t){this._items=t,this.render()}addItem(t,e=!0){this._items.push(t),this.render(),e&&this.onItemAdded.next(t)}removeItem(t,e=!0){-1!==this._items.indexOf(t)&&(this._items.splice(this._items.indexOf(t),1),this.render(),e&&this.onItemRemoved.next(t))}removeAtIndex(t,e=!0){if(t<0||t>=this._items.length)return;const n=this._items.splice(t,1);this.render(),e&&this.onItemRemoved.next(n[0])}removeAllItems(){this._items=[],this.render()}render(){var t,e,n,i,o;if(s.empty(this._root),!this.options.horizontalInputNames)for(const n of this.properties){let i=null!==(t=n.caption)&&void 0!==t?t:n.name;(null===(e=this.options.customLabels)||void 0===e?void 0:e[n.name])&&(i=this.options.customLabels[n.name]);const o=s.divText(i);o.style.fontWeight="bold",this._root.appendChild(o)}for(const t of this._items){const e=this.getItemDiv(t);for(const t of e)this._root.appendChild(t)}if(this.options.allowAdd){const t=this.getItemDiv(null!==(o=null===(i=(n=this.options).newItemFunction)||void 0===i?void 0:i.call(n))&&void 0!==o?o:void 0,!0);for(const e of t)this._root.appendChild(e)}}get addingItem(){const t={};return Object.keys(this.addingItemInputs).forEach((e=>{t[e]=this.addingItemInputs[e].value})),t}getItemDiv(t={},e){var n,i;const o=[],r={};let l=null;for(const c of this.properties){void 0===t[c.name]&&(t[c.name]=null);const h=(null===(n=this.options.customInputs)||void 0===n?void 0:n[c.name])?this.options.customInputs[c.name](t):s.input.forProperty(c,t),u=null===(i=this.options.validators)||void 0===i?void 0:i[c.name];u&&h.addValidator(u),o.push(this.options.horizontalInputNames?h.root:this.hideLabel(h.root)),c.propertyType!==a.TYPE.BOOL&&"color"!==c.name.toLowerCase()&&h.input&&(h.input.style.width="100%"),r[c.name]=h,h.onChanged.subscribe((()=>{t[c.name]=h.value,e?this.onAddingItemChanged.next({item:t,fieldName:c.name}):this.onItemChanged.next({item:t,fieldName:c.name})})),h.root.style.alignItems="center",l=h}let c=null;if(e)this.addingItemInputs=r,c=s.icons.add((()=>{const t=this.options.newItemFunction?this.options.newItemFunction():{};Object.keys(r).forEach((e=>{t[e]=r[e].value})),this._items.push(t),this.onItemAdded.next(t),this.render()}),this.options.addButtonTooltip);else{if(!this.options.allowRemove)return o;c=s.icons.delete((()=>{this._items.splice(this._items.indexOf(t),1),this.onItemRemoved.next(t),this.render()}),this.options.removeButtonTooltip)}return l&&l.addOptions?l.addOptions(c):null==l||l.root.appendChild(c),c.style.color="#2083d5",o}hideLabel(t){return t.getElementsByTagName("label")[0]&&t.removeChild(t.getElementsByTagName("label")[0]),t}hasErrors(){return this._root.querySelectorAll(".d4-invalid").length>0}}const vn={A:new V.A(new Uint32Array([2,0,0,0,16,0,0,0,134217728,0,0,0,32,0,33554432,0,0,0,0,0,1024,0,0,0,262144,128,0,0,0,0,0,0,0,2,0,0,524288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1048576,0,536870912,0,0,0,0]),2048),C:new V.A(new Uint32Array([2,0,65536,0,0,0,0,32,0,0,2,0,32,0,0,0,0,0,0,0,1024,0,0,0,262144,128,0,0,0,0,0,0,0,65536,0,0,524288,0,0,0,0,0,0,0,524288,524288,0,0,0,0,0,0,0,0,0,0,0,34603008,0,536870912,64,0,0,0]),2048),D:new V.A(new Uint32Array([2,0,65600,0,0,0,0,0,0,0,0,0,32,0,0,0,0,0,0,0,1024,0,0,0,262400,128,0,0,0,0,0,0,0,0,0,2097152,524288,0,0,0,1024,0,0,0,524288,0,0,0,0,0,0,0,0,0,512,0,0,34603008,0,536870912,0,0,0,0]),2048),E:new V.A(new Uint32Array([2,0,65536,0,0,0,0,0,0,0,0,0,32,0,0,0,0,0,0,0,1024,0,0,8,262144,128,0,0,16,134217728,0,0,0,0,0,0,524288,0,0,0,128,0,0,0,524288,0,0,0,268435456,0,0,0,0,0,512,2147483648,0,34603008,0,536870912,0,0,0,0]),2048),F:new V.A(new Uint32Array([2,0,98304,0,0,0,0,0,0,0,0,0,32,0,0,0,0,0,0,0,1024,0,0,0,262144,128,33554432,0,0,0,0,33554432,0,1024,1,0,524288,32768,32,0,0,0,0,16,524288,0,0,0,0,0,0,0,0,0,71303168,0,0,34603008,131072,536870912,0,0,0,0]),2048),G:new V.A(new Uint32Array([134217728,0,65536,0,0,0,0,0,0,0,0,0,32,0,0,0,0,0,0,0,1024,0,0,0,0,128,0,0,0,0,2097216,0,0,0,0,0,524288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,512,0,0,0,0,536870912,0,0,0,0]),2048),H:new V.A(new Uint32Array([2,0,1073840128,0,0,0,0,0,0,0,0,67108864,32,0,0,0,0,0,0,0,1024,0,512,0,262144,192,0,268435456,0,0,8200,0,0,0,67108864,0,524296,0,32,0,0,0,0,16,524288,0,0,2147483648,0,0,8,0,0,0,0,0,0,34603008,131072,536870920,4194304,0,0,0]),2048),I:new V.A(new Uint32Array([2,0,65536,0,0,0,0,0,150994944,64,0,0,32,0,0,0,0,0,0,0,1024,0,8388608,0,327680,128,0,0,0,0,0,0,0,2,0,524288,524288,0,0,0,0,0,0,0,0,0,0,0,256,0,0,0,0,8388608,0,33554432,0,1048576,0,536870912,0,0,0,0]),2048),K:new V.A(new Uint32Array([2,0,65536,0,0,0,0,0,0,0,0,0,268435488,0,0,0,0,0,0,0,1024,0,0,8,262144,128,0,0,0,0,2097152,0,0,67108864,0,0,524288,0,0,0,8,0,0,0,524288,0,0,8192,0,0,0,0,0,0,0,2147483648,0,34668544,0,545259520,0,0,0,0]),2048),L:new V.A(new Uint32Array([2,0,65536,0,0,0,0,0,134217728,0,0,0,32,512,0,0,0,0,0,0,1024,256,0,8388608,262400,128,0,0,0,0,0,0,0,2,0,0,524288,0,0,0,0,0,0,0,524288,0,0,0,0,0,0,0,0,0,0,0,0,42991616,0,536870912,0,0,0,0]),2048),M:new V.A(new Uint32Array([2050,0,65536,1048576,0,0,0,0,0,0,0,0,1056,0,0,0,0,0,0,0,1024,0,0,8,262144,128,0,0,0,0,0,536870912,0,2,0,0,1074266112,0,0,0,0,0,0,0,524288,0,0,0,4194304,0,0,0,0,0,0,2147483648,0,34603008,0,536870912,4194304,0,0,0]),2048),N:new V.A(new Uint32Array([2,0,65536,0,4096,0,0,0,0,0,0,16777216,32,0,0,0,0,0,0,0,1024,0,0,0,262400,128,0,0,0,0,0,0,0,0,0,0,524288,0,0,0,1024,0,0,0,524288,0,0,0,0,0,0,0,0,0,0,0,0,34603008,0,536871936,67108864,0,0,0]),2048),P:new V.A(new Uint32Array([0,0,1024,0,0,0,0,0,0,131072,0,1024,32,0,0,0,0,512,0,0,1024,0,0,64,0,128,0,0,1073741824,0,0,138412032,16,0,67108864,0,0,0,0,0,0,8192,0,0,8388608,0,0,8,0,0,0,0,0,0,256,0,0,0,0,553648128,0,0,0,0]),2048),Q:new V.A(new Uint32Array([2,0,65536,0,4096,0,0,0,0,0,0,0,32,0,0,0,0,2,0,0,1024,0,0,8,262144,128,0,0,16,0,0,0,0,0,0,0,524288,0,0,0,0,0,0,0,524288,0,0,0,268435456,0,0,0,0,0,16777216,2147483648,0,34603008,0,536871936,0,0,0,0]),2048),R:new V.A(new Uint32Array([2,0,65536,0,4096,0,32,0,0,0,0,0,268435488,0,0,0,0,0,0,32768,134218752,0,16,8,262144,128,0,1073741824,0,0,8388608,0,0,0,65536,0,524289,0,0,0,0,0,0,0,524288,2048,0,0,0,0,0,0,0,0,0,2147483648,0,34603008,1048576,545259520,0,0,0,0]),2048),S:new V.A(new Uint32Array([2,0,65536,0,0,0,1073741824,0,0,0,0,0,32,0,0,4,0,0,0,0,1024,0,0,0,262144,128,0,0,0,0,0,0,0,0,0,0,524288,0,0,1048576,0,0,0,0,524288,0,0,0,0,0,0,0,0,0,8388608,0,0,34603008,0,536870912,0,0,0,0]),2048),T:new V.A(new Uint32Array([2,0,0,0,0,0,0,8,134217728,0,0,67108864,32,0,0,0,0,0,0,0,1024,0,8388608,0,262144,128,0,0,0,0,0,0,0,2,0,524288,524288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,536870912,0,0,0,0,1048576,67108864,536870912,0,0,0,0]),2048),V:new V.A(new Uint32Array([2,0,0,0,0,0,0,0,134217728,0,0,0,32,0,0,0,0,0,0,0,1024,0,8388608,0,262144,128,0,0,0,0,0,1073741824,128,2,0,524288,524288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8192,0,1048576,0,536870912,0,0,0,0]),2048),W:new V.A(new Uint32Array([2,0,98304,8388608,0,0,0,0,0,0,256,4096,32,0,0,0,0,0,0,0,1024,0,0,0,262144,192,0,0,0,0,0,0,0,0,67108865,0,524288,32768,32,0,0,0,8224,16,524288,0,0,0,0,32,128,0,2097152,0,4194304,8388608,0,34603008,8519680,536870912,131072,262144,0,0]),2048),Y:new V.A(new Uint32Array([2,0,98304,0,0,0,0,0,0,4194304,0,0,32,0,0,0,0,0,0,0,1024,0,0,512,262144,128,33554432,0,0,0,0,33554432,0,0,0,0,524288,0,32,0,0,2,0,16,524288,0,0,0,0,0,4,0,0,0,71303168,262144,0,34603008,131072,536870912,0,0,0,0]),2048)},wn={RNA:{A:new V.A(new Uint32Array([0,0,0,0,0,0,0,0,0,1024,0,67108864,0,0,0,512,0,0,0,8388608,0,0,512,0,0,64,4,0,0,0,4,0,0,0,67108864,0,524289,0,0,0,0,0,0,16,0,659456,0,256,0,16,0,0,0,268435456,0,0,262144,0,131072,0,0,0,8388608,0]),2048),C:new V.A(new Uint32Array([0,1073741824,0,0,0,0,0,2147483648,4,67108864,0,67108864,0,256,0,0,0,0,0,0,1024,0,128,0,0,64,0,0,0,0,0,0,0,0,67108864,0,524289,0,65536,0,0,0,0,16,0,131072,0,4,0,0,0,0,0,0,4194304,0,0,2147483648,131072,0,4096,0,0,0]),2048),G:new V.A(new Uint32Array([0,0,0,0,1024,0,0,0,0,67109888,16384,67108864,0,0,0,0,0,0,0,33562624,1024,33554432,512,16384,0,64,4,0,0,33554432,0,0,0,0,67108864,0,524289,0,0,0,0,0,0,16,0,135168,0,268435456,0,0,0,0,0,268435456,131072,0,0,2147483648,131072,0,0,0,8388608,0]),2048),T:new V.A(new Uint32Array([8388608,0,0,0,0,0,0,0,0,67108864,0,0,0,4,0,0,0,0,0,0,1024,0,0,16384,0,64,0,0,0,0,0,0,0,2,67108864,0,0,0,0,0,0,0,0,40976,0,0,0,0,0,0,0,0,0,67108864,131072,524288,0,0,8519680,0,1,33554432,1048576,0]),2048),U:new V.A(new Uint32Array([0,0,131072,1073741824,0,0,0,0,0,67108864,0,0,0,0,0,0,0,0,0,0,1024,0,128,0,0,64,0,0,0,0,0,0,0,32768,67108864,0,0,0,0,0,0,0,0,16,0,0,0,4,0,0,2048,0,0,0,4341760,0,0,0,131072,0,0,33554432,1048576,0]),2048)},PEPTIDE:vn};async function Cn(t,e,n=0){if(!Object.keys(wn).includes(e))return null;const i=await async function(t){const e=a.Func.find({package:"Chem",name:"getMorganFingerprint"})?.[0];if(!e)return null;try{const n=(await e.apply({molString:t}))?.getBuffer().buffer;if(n)return new V.A(new Uint32Array(n),2048)}catch(t){return null}}(t);if(!i)return null;if(!wn[e])return null;const o=wn[e];let r=0,s=null;for(const[t,e]of Object.entries(o)){const o=(0,k.$1)(i,e);o>r&&o>=n&&(r=o,s=t)}return s}var An,Sn=n(857),xn={};xn.styleTagTransform=A(),xn.setAttributes=b(),xn.insert=g().bind(null,"head"),xn.domAPI=m(),xn.insertStyleElement=w(),d()(Sn.A,xn),Sn.A&&Sn.A.locals&&Sn.A.locals,function(t){t.MONOMER="Monomer",t.SYMBOL="Symbol",t.NAME="Name",t.R_GROUPS="~R-Groups",t.MONOMER_TYPE="Monomer Type",t.POLYMER_TYPE="Polymer Type",t.NATURAL_ANALOG="Natural Analog",t.AUTHOR="Author",t.CREATE_DATE="Create Date",t.ID="ID",t.META="Meta",t.SOURCE="Source"}(An||(An={}));const En={[An.MONOMER]:a.COLUMN_TYPE.STRING,[An.SYMBOL]:a.COLUMN_TYPE.STRING,[An.NAME]:a.COLUMN_TYPE.STRING,[An.R_GROUPS]:a.COLUMN_TYPE.STRING,[An.MONOMER_TYPE]:a.COLUMN_TYPE.STRING,[An.POLYMER_TYPE]:a.COLUMN_TYPE.STRING,[An.NATURAL_ANALOG]:a.COLUMN_TYPE.STRING,[An.AUTHOR]:a.COLUMN_TYPE.STRING,[An.CREATE_DATE]:a.COLUMN_TYPE.DATE_TIME,[An.ID]:a.COLUMN_TYPE.INT,[An.META]:a.COLUMN_TYPE.STRING,[An.SOURCE]:a.COLUMN_TYPE.STRING};class Tn{monomerLibManamger;adjustTable(){this.tv?.dataFrame&&(r.data.detectSemanticTypes(this.tv.dataFrame),this.tv.dataFrame.meta.detectSemanticTypes()),setTimeout((()=>{this.tv?.grid&&(this.tv.grid.props.allowEdit=!1,this.tv.grid.col(An.NAME).width=100,this.tv.grid.col(An.SYMBOL).width=70)}),200)}static VIEW_NAME="Manage Monomers";_newMonomer=yn.pe;_newMonomerForm;monomerLib;tv=null;libInput;static instance;activeMonomerLib=null;constructor(t){this.monomerLibManamger=t,this.monomerLib=t.getBioLib(),this._newMonomerForm=new Nn(t,(()=>this.activeMonomerLib),(async t=>{const e=await this.getMonomersDf(this.libInput.value);this.tv?.dataFrame&&(this.tv.dataFrame=e,this.adjustTable(),null!=t&&setTimeout((()=>{const n=e.col(An.SYMBOL).toList().indexOf(t);-1!==n&&(this.tv?.grid.scrollToCell(e.columns.byIndex(0),n),e.currentRow=e.rows.get(n))}),500))}),(()=>this.tv?.dataFrame))}static async getInstance(){if(!this.instance){const t=await dn.getInstance();await t.awaitLoaded(),await t.loadLibrariesPromise,this.instance=new Tn(t)}return this.instance}static async getNewInstance(){const t=await dn.getInstance();return await t.awaitLoaded(),await t.loadLibrariesPromise,new Tn(t)}async createNewMonomerLib(t,e){this.tv?.grid&&s.setUpdateIndicator(this.tv.grid.root,!0);try{const n=JSON.stringify(e.map((t=>({...t,lib:void 0,wem:void 0}))),null,2);t.endsWith(".json")||(t+=".json"),await(await this.monomerLibManamger.getFileManager()).addLibraryFile(n,t),await r.dapi.files.writeAsText(cn.so+t,n),await this.monomerLibManamger.loadLibraries(!1),r.shell.v=await this.getViewRoot(t)}catch(t){r.shell.error("Error creating library"),console.error(t)}finally{this.tv?.grid&&s.setUpdateIndicator(this.tv.grid.root,!1)}}async createNewLibDialog(t){const e=(await this.monomerLibManamger.getFileManager()).getValidLibraryPaths(),n=s.input.string("Library Name",{placeholder:"Enter library name",nullable:!1,onValueChanged:()=>{const t=i(n.value);o.getButton("Create")?.classList?.toggle("d4-disabled",!!t)}});function i(t){return t&&t.trim()?t.endsWith(".json")&&e.includes(t)||e.includes(t+".json")?"Library with this name already exists":null:"Library name cannot be empty"}n.addValidator(i);const o=s.dialog("Create New Library").add(n).addButton("Create",(async()=>{const e=i(n.value);if(e)r.shell.warning(e);else{try{await this.createNewMonomerLib(function(){let t=n.value;return t.endsWith(".json")||(t+=".json"),t}(),t??[])}catch(t){r.shell.error("Error creating library"),console.error(t)}o.close()}})).show();o.getButton("Create")?.classList?.toggle("d4-disabled",!0)}get newMonomer(){return this._newMonomer}getNewMonomerForm(){return this._newMonomerForm}async getMonomersTableView(t,e=!0){const n=await this.getMonomersDf(t);return this.tv=a.TableView.create(n,e),this.adjustTable(),this.tv.subs.push(r.events.onContextMenu.subscribe((({args:t})=>{if(!t||!t.menu||!t.context||t.context.type!==a.VIEWER.GRID||!t.context.tableView||t.context.tableView.id!==(this.tv.id??"")||!t.item||!t.item.isTableCell||(t.item.tableRowIndex??-1)<0)return;const e=t.item.tableRowIndex;t.menu.item("Edit Monomer",(async()=>{await this.editMonomer(this.tv.dataFrame.rows.get(e))})),t.menu.item("Fix all monomers",(()=>{this.fixAllMonomers()})),this.tv.dataFrame.selection.trueCount>0?(t.menu.item("Remove Selected Monomers",(async()=>{const t=await Promise.all(Array.from(this.tv.dataFrame.selection.getSelectedIndexes()).map((t=>On(this.tv.dataFrame.rows.get(t)))));this._newMonomerForm.removeMonomers(t,this.libInput.value)})),t.menu.item("Selection To New Library",(async()=>{const t=await Promise.all(Array.from(this.tv.dataFrame.selection.getSelectedIndexes()).map((t=>On(this.tv.dataFrame.rows.get(t)))));this.createNewLibDialog(t)}))):t.menu.item("Remove Monomer",(async()=>{const t=await On(this.tv.dataFrame.rows.get(e));this._newMonomerForm.removeMonomers([t],this.libInput.value)}))}))),this.tv.grid&&(this.tv.grid.props.allowEdit=!1),this.tv}static closeAllMonomerManagers(){Array.from(r.shell.tableViews??[]).filter((t=>t.name===Tn.VIEW_NAME)).forEach((t=>t.close()))}findActiveManagerView(){if(!this.tv)return null;const t=Array.from(r.shell.tableViews??[]).find((t=>t.id===this.tv.id));return t?r.shell.v=t:Tn.closeAllMonomerManagers(),t??null}_skipLibInputOnchange=!1;async getViewRoot(t,e=!0){const n=(await this.monomerLibManamger.getFileManager()).getValidLibraryPaths();if(this._newMonomerForm.molSketcher.resize(),e&&(this.tv=this.findActiveManagerView())&&(t??this.libInput.value)){try{this._skipLibInputOnchange=!0,this.libInput&&(this.libInput.items=n),t&&(this.libInput.value=t)}catch(t){r.shell.error("Error updating library list"),console.error(t)}finally{this._skipLibInputOnchange=!1}const e=await this.getMonomersDf(t);return this.tv.dataFrame=e,this.adjustTable(),this.tv}t??=n[0],this.tv=await this.getMonomersTableView(t,e);let i=this.tv.getRibbonPanels();i.forEach(((t,e)=>{i[e]=t.filter((t=>0!==t.getElementsByClassName("grok-icon-filter").length))})),i=i.filter((t=>t.length>0));const o=s.icons.add((()=>{this._newMonomerForm.setEmptyMonomer()}),"Add New Monomer"),l=s.iconFA("wand-magic",(()=>{this.fixAllMonomers()}),"Fix all monomers"),c=s.icons.edit((async()=>{(this.tv?.dataFrame?.currentRowIdx??-1)<0||await this.editMonomer(this.tv.dataFrame.rows.get(this.tv.dataFrame.currentRowIdx))}),"Edit Monomer"),h=s.icons.delete((async()=>{const t=this.tv?.dataFrame?.currentRowIdx??-1,e=Array.from(this.tv?.dataFrame?.selection?.getSelectedIndexes()??[]);if(t<0&&0===e.length)return;if(e.length>0){const t=await Promise.all(e.map((t=>On(this.tv.dataFrame.rows.get(t)))));return void await this._newMonomerForm.removeMonomers(t,this.libInput.value)}const n=await On(this.tv.dataFrame.rows.get(t));await this._newMonomerForm.removeMonomers([n],this.libInput.value)}));s.tooltip.bind(h,(()=>(this.tv?.dataFrame?.selection?.trueCount??0)>0?"Delete selected monomers":"Delete monomer"));const u=s.iconFA("arrow-to-bottom",(async()=>{const t=this.libInput.value;if(!t)return r.shell.error("No library selected");let e=null;try{e=await r.dapi.files.readAsText(cn.so+t)}catch(e){return r.shell.error(`Error reading library ${t}`),console.error(e)}if(!e)return r.shell.error(`Library ${t} is empty`);a.Utils.download(t,e,"text/plain")}),"Download Monomer Library");i.push([o,c,l,h,u]),this.tv.setRibbonPanels(i),this.tv.name=Tn.VIEW_NAME,this.libInput=s.input.choice("Monomer Library",{value:t,items:n,nullable:!1,onValueChanged:async()=>{try{if(this._skipLibInputOnchange)return;const t=await this.getMonomersDf(this.libInput.value);this.tv.dataFrame=t,this.adjustTable()}catch(t){console.error(t)}}}),this.libInput.addOptions(s.icons.add((()=>{this.createNewLibDialog()}),"Create new monomer library..."));const d=this._newMonomerForm.form;return d.prepend(this.libInput.root),s.tools.waitForElementInDom(this.tv.root).then((()=>{this.tv.dockManager.dock(d,a.DOCK_TYPE.LEFT,null,void 0,.4)})),this.tv}async editMonomer(t){return this._newMonomer=await On(t),this._newMonomerForm.setMonomer(this._newMonomer),this._newMonomer}async getMonomersDf(t){this.tv?.grid&&s.setUpdateIndicator(this.tv.grid.root,!0);try{if(t??=(await this.monomerLibManamger.getFileManager()).getValidLibraryPaths()[0],this.activeMonomerLib=await this.monomerLibManamger.readLibrary(cn.so,t),!this.activeMonomerLib)return r.shell.error(`Library ${t} not found`),a.DataFrame.create();const e=this.activeMonomerLib.getPolymerTypes().flatMap((t=>this.activeMonomerLib.getMonomerSymbolsByType(t).map((e=>this.activeMonomerLib.getMonomer(t,e))))),n=a.DataFrame.create(e.length),i=new Set;for(const t of e)t.rgroups.forEach((t=>{t.label&&i.add(t.label)}));const o=Array.from(i);o.sort();for(const[t,e]of Object.entries(En))if(n.columns.addNew(t,e),t===An.R_GROUPS)for(const t of o)n.columns.addNew(t,a.COLUMN_TYPE.STRING);n.col(An.SYMBOL).semType="Monomer",n.col(An.SYMBOL).setTag(Rt.Mn.applyToBackground,"true");for(let t=0;t<e.length;t++){let i=$n(e[t].rgroups,e[t].smiles,e[t].molfile);i=_n(i),e[t].rgroups=Ln(e[t].rgroups);const r=o.map((n=>{const i=e[t].rgroups.find((t=>t.label===n));return i?In(i,"capGroupSmiles"):""}));let s=null;if(e[t].createDate)try{s=Date.parse(e[t].createDate)}catch(n){console.error(`Error parsing date ${e[t].createDate}`)}n.rows.setValues(t,[i,e[t].symbol,e[t].name,JSON.stringify(e[t].rgroups??[]),...r,e[t].monomerType,e[t].polymerType,e[t].naturalAnalog,e[t].author,s,e[t].id,JSON.stringify(e[t].meta??{}),e[t].lib?.source??""]);try{s&&n.col(An.CREATE_DATE)?.set(t,s,!1)}catch(n){console.error(`Error setting date ${e[t].createDate}`)}}return n.col(An.MONOMER).semType=a.SEMTYPE.MOLECULE,o.forEach((t=>{n.col(t).semType=a.SEMTYPE.MOLECULE})),n.currentRowIdx=-1,n.onCurrentRowChanged.subscribe((async t=>{try{if(-1===n.currentRowIdx||this._newMonomerForm.molChanged)return;await this.editMonomer(n.rows.get(n.currentRowIdx))}catch(t){console.error(t)}})),n}catch(t){throw r.shell.error("Error creating monomers dataframe"),console.error(t),t}finally{this.tv?.grid&&s.setUpdateIndicator(this.tv.grid.root,!1)}}async fixAllMonomers(){s.dialog("Fix All Monomers").add(s.divText("This action will fix all monomers in the library, standardize their smiles, molblocks and r-groups, assign correct natural analogs and save the library.")).add(s.divText("Do you wish to continue?")).onOK((async()=>{const t=this.tv?.dataFrame;let e=this.libInput.value;if(t&&e){this.tv?.grid&&s.setUpdateIndicator(this.tv.grid.root,!0);try{const n=await Promise.all(new Array(t.rowCount).fill(0).map(((e,n)=>On(t.rows.get(n))))),i=JSON.stringify(n.map((t=>({...t,lib:void 0,wem:void 0}))),null,2);e.endsWith(".json")||(e+=".json"),await r.dapi.files.writeAsText(cn.so+e,i),await this.monomerLibManamger.loadLibraries(!0),r.shell.v=await this.getViewRoot(e)}catch(t){r.shell.error("Error saving library"),console.error(t)}finally{this.tv?.grid&&s.setUpdateIndicator(this.tv.grid.root,!1)}}else r.shell.error("No monomer library loaded")})).show()}resetCurrentRowFollowing(){this._newMonomerForm.molChanged=!1}}function _n(t){let e=t.replaceAll(/\[R[1-9]\]/g,(t=>`[*:${t[2]}]`));return e=e.replaceAll(/\[\d\*\]/g,(t=>`[*:${t[1]}]`)),e.replaceAll(/\[\d\*\:\d\]/g,(t=>`[*:${t[1]}]`))}const Mn=["alternateId","capGroupName","capGroupSMILES","label"];function In(t,e){const n=Object.keys(t).find((t=>t.toLowerCase()===e.toLowerCase()));if(n)return t[n]}function Ln(t){return t.map((t=>{const e=function(t,e){const n={};return t.forEach((t=>{const i=Object.keys(e).find((e=>e.toLowerCase()===t.toLowerCase()));i&&(n[t]=e[i])})),n}(Mn,t),n=In(e,"capGroupSMILES"),i=In(e,"alternateId"),o=In(e,"capGroupName"),r=In(e,"label")??"R1";if(n&&i&&o||r.length<2)return e;if(i&&-1!==i.indexOf(`${r}-`)){const t=i.replace(`${r}-`,"");o||(e.capGroupName=t),n||(e.capGroupSMILES=`[*:${r.substring(1)}][${t}]`)}else o&&(n||(e.capGroupSMILES=`[*:${r.substring(1)}][${o}]`),i||(e.alternateId=`${r}-${o}`));return e})).sort(((t,e)=>t.label?.localeCompare(e.label??"")??0))}class Nn{monomerLibManager;getMonomerLib;refreshTable;getMonomersDataFrame;molSketcher;monomerTypeInput;polymerTypeInput;monomerSymbolInput;monomerNameInput;monomerIdInput;monomerNaturalAnalogInput;rgroupsGrid;metaGrid;colors;colorsEditor;saveButton;rgroupsGridRoot;_molChanged=!1;get molChanged(){return this._molChanged}set molChanged(t){this._molChanged=t}saveValidationResult=null;triggerMolChange=!0;inputsTabControl;constructor(t,e,n,i){this.monomerLibManager=t,this.getMonomerLib=e,this.refreshTable=n,this.getMonomersDataFrame=i,this.colors={line:"#000000",background:"#000000",text:"#000000"},this.colorsEditor=new Hn(this.colors),this.molSketcher=new a.chem.Sketcher,this.molSketcher.root.classList.add("monomer-manager-sketcher"),this.polymerTypeInput=s.input.choice("Polymer Type",{value:"PEPTIDE",items:["PEPTIDE","RNA","CHEM","BLOB","G"],onValueChanged:()=>this.onMonomerInputChanged(),nullable:!1}),this.monomerTypeInput=s.input.choice("Monomer Type",{value:"Backbone",items:["Backbone","Branch","Terminal"],onValueChanged:()=>this.onMonomerInputChanged(),nullable:!1}),this.monomerSymbolInput=s.input.string("Monomer Symbol",{nullable:!1,onValueChanged:()=>this.onMonomerInputChanged()}),this.monomerNameInput=s.input.string("Monomer Name",{nullable:!1,onValueChanged:()=>this.onMonomerInputChanged()}),this.monomerNameInput.nullable=!1,this.monomerIdInput=s.input.int("Monomer ID",{nullable:!0,value:0,onValueChanged:()=>this.onMonomerInputChanged()}),this.monomerNaturalAnalogInput=s.input.string("Natural Analog",{nullable:!0,onValueChanged:()=>this.onMonomerInputChanged()}),this.saveButton=s.bigButton("Save",(async()=>{const t=this.validateInputs();t?r.shell.warning(t):await this.saveMonomer()})),this.molSketcher.subs.push(this.molSketcher.onChanged.subscribe((async()=>{if(this.triggerMolChange){try{this.rgroupsGridRoot.style.display="none";const t=this.inputsTabControl.panes.find((t=>"r-groups"===t.name?.toLowerCase()));t&&t.header.style.removeProperty("background-color");let e=this.molSketcher.getSmiles();if(!e)return this.rgroupsGrid.items=[],this.rgroupsGrid.render(),this.saveValidationResult="Monomer molecule is required",void this.invalidateSaveButton();e=$n([],e);const n=this.findRgroupsInSmiles(e);if(0===n.length)return this.rgroupsGrid.items=[],this.rgroupsGrid.render(),this.saveValidationResult="At least one R-group is required",t&&t.header.style.setProperty("background-color","#ff000030"),void this.invalidateSaveButton();if(new Set(n.map((t=>t[0]))).size!==n.length)return this.saveValidationResult="Duplicate R-groups are not allowed",this.rgroupsGridRoot.style.display="flex",t&&t.header.style.setProperty("background-color","#ff000030"),void this.invalidateSaveButton();const i=n.map((t=>Number.parseInt(t[0].match(/[1-9]/g)[0]))).map((t=>this.rgroupsGrid.items.find((e=>e.label===`R${t}`))??{capGroupSMILES:`[*:${t}][H]`,alternateId:`R${t}-H`,capGroupName:"H",label:`R${t}`}));this.rgroupsGrid.items=i.sort(((t,e)=>t.label?.localeCompare(e.label??"")??0)),this.rgroupsGrid.render(),this.rgroupsGridRoot.style.display="flex";const o=await Cn(kn(e,i),this.polymerTypeInput.value??"");o&&(this.monomerNaturalAnalogInput.value=o)}catch(t){console.error(t)}this.onMonomerInputChanged(),this._molChanged=!0}else this.triggerMolChange=!0})));const o=[a.Property.js("capGroupSMILES",a.TYPE.STRING,{caption:"R-group SMILES",nullable:!1}),a.Property.js("alternateId",a.TYPE.STRING,{caption:"Alternate ID",nullable:!1}),a.Property.js("capGroupName",a.TYPE.STRING,{caption:"R-group name",nullable:!1}),a.Property.js("label",a.TYPE.STRING,{fieldName:"R-group Label",nullable:!1,userEditable:!1})];this.rgroupsGrid=new bn(o,[],{allowAdd:!1,allowRemove:!1,validators:{capGroupSMILES:t=>t?r.chem.checkSmiles(t)?null:"Invalid SMILES":"Cap group smiles is required",alternateId:t=>t?null:"Alternate ID is required",capGroupName:t=>t?null:"Cap group name is required",label:t=>t?null:"R-group label is required"},customLabels:{capGroupSMILES:"R-group SMILES",alternateId:"Alternate ID",capGroupName:"Cap Group Name",label:"Label"}}),this.rgroupsGrid.onItemChanged.subscribe((()=>this.onMonomerInputChanged())),this.rgroupsGridRoot=s.divV([this.rgroupsGrid.root]),this.rgroupsGridRoot.style.display="none";const l=[a.Property.js("Property",a.TYPE.STRING,{caption:"Property",nullable:!0}),a.Property.js("Value",a.TYPE.STRING,{caption:"Value",nullable:!0})];this.metaGrid=new bn(l,[]),this.onMonomerInputChanged();const c=s.divV([this.polymerTypeInput,this.monomerTypeInput,this.monomerSymbolInput,this.monomerNameInput,this.monomerIdInput,this.monomerNaturalAnalogInput]);this.inputsTabControl=s.tabControl({Monomer:c,"R-groups":this.rgroupsGridRoot,Meta:s.divV([this.metaGrid.root]),Colors:this.colorsEditor.form},!1)}invalidateSaveButton(){this.saveValidationResult?this.saveButton.classList.add("d4-disabled"):this.saveButton.classList.remove("d4-disabled")}onMonomerInputChanged(){setTimeout((()=>{this.saveValidationResult=this.validateInputs(),this.invalidateSaveButton();const t=this.polymerTypeInput.value&&this.polymerTypeInput.value&&!!this.getMonomerLib()?.getMonomer(this.polymerTypeInput.value,this.monomerSymbolInput.value);this.saveButton.textContent=t?"Save Monomer":"Add Monomer"}),200)}setEmptyMonomer(){this.triggerMolChange=!1,this.molSketcher.setSmiles(""),this.monomerSymbolInput.value="",this.monomerNameInput.value="",this.monomerIdInput.value=null,this.monomerNaturalAnalogInput.value=null,this.rgroupsGrid.items=[],this.metaGrid.items=[],this.rgroupsGrid.render(),this.metaGrid.render(),this.rgroupsGridRoot.style.display="none",this.onMonomerInputChanged(),this.colorsEditor.colors={line:"#000000",background:"#000000",text:"#000000"}}setMonomer(t){this.triggerMolChange=!1,this.molSketcher.setSmiles(t.smiles),this.polymerTypeInput.value=t.polymerType,this.monomerTypeInput.value=t.monomerType,this.monomerSymbolInput.value=t.symbol,this.monomerNameInput.value=t.name,this.monomerIdInput.value=t.id,this.monomerNaturalAnalogInput.value=t.naturalAnalog??null,this.rgroupsGrid.items=Ln(t.rgroups),this.metaGrid.items=Object.entries(t.meta??{}).filter((([t,e])=>"colors"!==t?.toLowerCase())).map((([t,e])=>({Property:t,Value:e}))),this.rgroupsGrid.render(),this.metaGrid.render(),this.rgroupsGridRoot.style.display="flex",this.onMonomerInputChanged(),!t.naturalAnalog&&t.polymerType&&Cn(kn(t.smiles,this.rgroupsGrid.items),t.polymerType).then((t=>{t&&(this.monomerNaturalAnalogInput.value=t)}));const e=t.meta?.colors??"";let n={};try{n=e?JSON.parse(e)?.default:{}}catch(t){console.error(t)}this.colorsEditor.colors={line:n.line??"#000000",background:n.background??"#000000",text:n.text??"#000000"}}validateInputs(){const t=this.inputsTabControl.panes.find((t=>"r-groups"===t.name?.toLowerCase()));if(t&&t.header.style.removeProperty("background-color"),!this.molSketcher.getSmiles())return"Monomer Molecule field is required";for(const t of[this.polymerTypeInput,this.monomerTypeInput,this.monomerSymbolInput,this.monomerNameInput])if(null==t.value||""===t.value)return`${t.caption} field is required`;let e=null;if(this.rgroupsGrid.items.length<1&&(e="At least one R-group is required"),!e)t:for(const t of this.rgroupsGrid.items)for(const[n,i]of Object.entries(t))if(!i){e=`R-group ${n} field is required for ${t.label}`;break t}return!e&&this.rgroupsGrid.hasErrors()&&(e="R-group fields contain errors"),e?(t&&t.header.style.setProperty("background-color","#ff000030"),e):null}findRgroupsInSmiles(t){return[...Array.from(t.matchAll(/\[[1-9]\*\]/g)),...Array.from(t.matchAll(/\[\*\:[1-9]\]/g))]}get form(){this.inputsTabControl.root.classList.add("monomer-manager-form-tab-control"),this.inputsTabControl.header.style.marginBottom="10px";const t=s.buttonsInput([this.saveButton]);return s.tooltip.bind(t,(()=>this.saveValidationResult??"Save monomer to library")),s.divV([this.molSketcher.root,this.inputsTabControl.root,t],{classes:"ui-form",style:{paddingLeft:"10px",overflow:"scroll",maxWidth:"unset"}})}get fieldInputs(){return{molecule:this.molSketcher,polymerType:this.polymerTypeInput,monomerType:this.monomerTypeInput,symbol:this.monomerSymbolInput,name:this.monomerNameInput,id:this.monomerIdInput,naturalAnalog:this.monomerNaturalAnalogInput}}get metaInputs(){return[]}get rgroupInputs(){return[]}getMonomerInfoTable(t){const e=$n(t.rgroups,t.smiles,t.molfile),n=r.chem.drawMolecule(e,150,150),i=s.tableFromMap({name:t.name,author:t.author,createDate:t.createDate});return s.divH([n,i],{style:{alignItems:"center"}})}async removeMonomers(t,e,n=!0){let i=[];try{const t=await r.dapi.files.readAsText(cn.so+e);i=JSON.parse(t)}catch(t){return r.shell.error(`Error reading library ${e}`),console.error(t)}const o=t.map((t=>Pn(i,(e=>e.symbol===t.symbol&&e.polymerType===t.polymerType))));for(let n=0;n<o.length;n++)if(-1===o[n])return void r.shell.error(`Monomer ${t[n].symbol} not found in library ${e}`);const a=o.map((t=>i[t])),l=s.divV(a.map((t=>this.getMonomerInfoTable(t))),{style:{maxHeight:"500px",overflow:"scroll"}}),c=a.length>1,h=c?`Are you sure you want to remove monomers ${a.map((t=>t.symbol)).join(", ")} from ${e} library?`:`Are you sure you want to remove monomer with symbol ${a[0].symbol} from ${e} library?`,u=s.dialog("Remove Monomer"+(c?"s":"")).add(s.h1(h)).add(l).addButton("Remove",(async()=>{i=i.filter((t=>!a.includes(t))),await r.dapi.files.writeAsText(cn.so+e,JSON.stringify(i,null,2)),await(await dn.getInstance()).loadLibraries(!0),await this.refreshTable(),n&&r.shell.info(`Monomer${c?"s":""} ${a.map((t=>t.symbol)).join(", ")} ${c?"were":"was"} successfully removed from ${e} library`),u.close()})).show()}async addMonomerToLib(t,e){let n=[];try{const t=await r.dapi.files.readAsText(cn.so+e);n=JSON.parse(t)}catch(t){return r.shell.error(`Error reading library ${e}`),console.error(t)}const i=Pn(n,(e=>e.symbol===t.symbol&&e.polymerType===t.polymerType)),o=this.getMonomersDataFrame()?.col(An.MONOMER)?.toList()?.findIndex((e=>e===t.smiles)),a=async()=>{try{const i=n.findIndex((e=>e.symbol===t.symbol&&e.polymerType===t.polymerType));i>=0?n[i]={...t,lib:void 0,wem:void 0}:n.push({...t,lib:void 0,wem:void 0}),await r.dapi.files.writeAsText(cn.so+e,JSON.stringify(n,null,2)),await(await dn.getInstance()).loadLibraries(!0),await this.refreshTable(t.symbol),this._molChanged=!1,r.shell.info(`Monomer ${t.symbol} was successfully saved in library ${e}`)}catch(t){r.shell.error("Error saving monomer"),console.error(t)}this.onMonomerInputChanged()};let l=null,c="";if(i>=0)l=this.getMonomerInfoTable(n[i]),c=`Monomer with symbol '${t.symbol}' already exists in library ${e}.\nAre you sure you want to overwrite it?`;else if((o??-1)>=0){const t=await On(this.getMonomersDataFrame().rows.get(o));l=this.getMonomerInfoTable(t),c=`Monomer with the same structure already exists in library ${e} with different symbol (${t.symbol}).\nAre you sure you want to duplicate it?`}if(l){const t=s.dialog("Save Monomer").add(s.divText(c)).add(l).addButton("Save",(()=>{t.close(),a()})).show()}else await a()}async saveMonomer(){let t=this.molSketcher.getSmiles();if(!t||!r.chem.checkSmiles(t))return void r.shell.warning("Invalid SMILES");t=$n([],t);let e=r.chem.convert(t,a.chem.Notation.Smiles,a.chem.Notation.MolBlock);e=Rn(e);const n={};this.metaGrid.items.filter((t=>!!t.Property&&!!t.Value)).forEach((t=>{n[t.Property]=t.Value}));const i=this.metaGrid.addingItem;i&&i.Property&&i.Value&&(n[i.Property]=i.Value),"#000000"===this.colorsEditor.colors.line&&"#000000"===this.colorsEditor.colors.background&&"#000000"===this.colorsEditor.colors.text||(n.colors={default:this.colorsEditor.colors});const o={symbol:this.monomerSymbolInput.value,name:this.monomerNameInput.value,molfile:e,smiles:t,polymerType:this.polymerTypeInput.value,monomerType:this.monomerTypeInput.value,naturalAnalog:this.monomerNaturalAnalogInput.value?this.monomerNaturalAnalogInput.value:void 0,id:this.monomerIdInput.value??0,rgroups:this.rgroupsGrid.items,author:a.User.current().friendlyName,createDate:(new Date).toISOString(),meta:n},s=this.getMonomerLib()?.source;s?await this.addMonomerToLib(o,s):r.shell.warning("Monomer library source is not specified")}}function Pn(t,e){let n=-1;for(let i=t.length-1;i>=0;i--)if(e(t[i])){n=i;break}return n}function $n(t,e,n){const i=!e||!r.chem.checkSmiles(e);if(i&&!n)throw new Error("Both SMILES and MOL block are empty or malformed");let o=i?r.chem.convert(n,a.chem.Notation.Unknown,a.chem.Notation.Smiles):e;return o=function(t,e){let n=t;return e.forEach((t=>{const e=t.label[1]??"1",i=new RegExp(`\\[\\${t.capGroupName}:${e}\\]`,"g");n=n.replace(i,`[*:${e}]`)})),n=n.replaceAll(/\[\d[A-Z]{1,2}\]/g,(t=>`[*:${t[1]}]`)),n}(o,t),o=_n(o),i?o:r.chem.convert(o,a.chem.Notation.Unknown,a.chem.Notation.Smiles)}function Rn(t){const e=t.split("\n"),n=e.findIndex((t=>t.startsWith("M")&&t.includes("ISO")));if(-1!==n){const t=e[n].indexOf("ISO");e[n]=e[n].substring(0,t)+"RGP"+e[n].substring(t+3)}const i=e.findIndex((t=>t.includes("V2000")));if(-1===i)return console.error("Mol start line not found"),t;const o=Number.parseInt(e[i].trim().split(" ")[0].slice(0,3).trim()),r={};for(let t=i+1;t<i+1+o;t++){const n=e[t].indexOf("R ");if(-1===n)continue;"#"!==e[t][n+1]&&(e[t]=e[t].replace("R ","R#"));const o=e[t].trim().split(" ").map((t=>t.trim())).filter(Boolean);if(r[t-i]=1,o.length<14)continue;const s=Number.parseInt(o[13]);Number.isNaN(s)||(r[t-i]=s)}const s=Object.keys(r);if(-1===e.findIndex((t=>t.startsWith("M")&&t.includes("RGP")))){const t=`M RGP${s.length.toString().padStart(3," ")}${Object.entries(r).map((([t,e])=>`${t.toString().padStart(4," ")}${e.toString().padStart(4," ")}`)).join("")}`,n=e.findIndex((t=>t.startsWith("M")&&t.includes("END")));e.splice(n,0,t)}return s.filter((t=>!!Number.parseInt(t))).map((t=>Number.parseInt(t)+i)).forEach((t=>{const n=e[t].split(" "),i=n.findIndex((t=>"R#"===t));if(-1!==i){for(let t=i+1;t<n.length;t++)n[t]&&1==n[t].length&&(Number.parseInt(n[t])??0)>0&&(n[t]="0");e[t]=n.join(" ")}})),e.join("\n")}function kn(t,e){let n=t;return e.forEach((t=>{const e=t.label[1]??"1",i=In(t,"capGroupName");n=n.replace(`[*:${e}]`,`[${i}]`)})),n}async function On(t){let e;try{e=JSON.parse(t.get(An.META)??"{}");for(const t in e)"object"==typeof e[t]&&(e[t]=JSON.stringify(e[t])),("string"!=typeof e[t]||e[t]!==a.INT_NULL.toString()&&e[t]!==a.FLOAT_NULL.toString())&&("number"!=typeof e[t]||e[t]!==a.INT_NULL&&e[t]!==a.FLOAT_NULL)||(e[t]=null)}catch(t){console.error(t)}const n=t.get(An.MONOMER);if(!n)throw new Error("Monomer SMILES is empty");let i="";try{i=r.chem.convert(n,a.chem.Notation.Smiles,a.chem.Notation.MolBlock),i=Rn(i)}catch(t){r.shell.error(`Error converting SMILES to molfile, \n ${n}`),console.error(t)}let o=t.get(An.NATURAL_ANALOG);const s=t.get(An.POLYMER_TYPE);let l=[];try{if(l=JSON.parse(t.get(An.R_GROUPS)??"[]"),!o&&s){const t=await Cn(kn(n,l),s);t&&(o=t)}}catch(t){l??=[]}return{symbol:t.get(An.SYMBOL),name:t.get(An.NAME),molfile:i,smiles:n,polymerType:s,monomerType:t.get(An.MONOMER_TYPE),naturalAnalog:o,id:t.get(An.ID),rgroups:l,meta:e,author:t.get(An.AUTHOR),createDate:t.get(An.CREATE_DATE)}}class Hn{_colors;_colorInputs;constructor(t){this._colors=t,this._colorInputs={line:s.input.color("Line",{value:t.line,onValueChanged:t=>this._colors.line=t}),background:s.input.color("Background",{value:t.background,onValueChanged:t=>this._colors.background=t}),text:s.input.color("Text",{value:t.text,onValueChanged:t=>this._colors.text=t})}}get colors(){return this._colors}set colors(t){const e={line:a.Color.toHtml(a.Color.fromHtml(t.line??"#000000")),background:a.Color.toHtml(a.Color.fromHtml(t.background??"#000000")),text:a.Color.toHtml(a.Color.fromHtml(t.text??"#000000"))};this._colors=e;for(const t in this._colorInputs)this._colorInputs[t].value=e[t]}get colorsMetaFormat(){return{colors:{default:this._colors}}}get form(){return s.form(Object.values(this._colorInputs))}}class Gn{monomer;root=s.divV([],{classes:"monomer-card-root"});_selected=!1;get selected(){return this._selected}set selected(t){this._selected=t,this.root.style.border=t?"2px solid var(--green-2)":"2px solid var(--grey-2)"}constructor(t){this.monomer=t}render(){s.empty(this.root);const t=this.monomer.smiles&&r.chem.checkSmiles(this.monomer.smiles)?r.chem.drawMolecule(this.monomer.smiles,200,200):r.chem.drawMolecule(this.monomer.molfile??"",200,200);this.root.appendChild(t);const e=s.divH([s.divText("Monomer Name: "),s.divText(this.monomer.name)],{classes:"monomer-card-info-row"});if(this.root.appendChild(e),s.tooltip.bind(e,this.monomer.name),this.monomer.lib?.source){const t=s.divH([s.divText("Source: "),s.divText(this.monomer.lib.source)],{classes:"monomer-card-info-row"});this.root.appendChild(t),s.tooltip.bind(t,this.monomer.lib.source)}const n=s.divH([s.divText("Polymer Type: "),s.divText(this.monomer.polymerType)],{classes:"monomer-card-info-row"});this.root.appendChild(n),s.tooltip.bind(n,this.monomer.polymerType),s.tooltip.bind(this.root,"Select Monomer")}}class Fn{monomerSymbol;monomers;root=s.divH([],{style:{alignItems:"center",width:"100%",overflow:"hidden",visibility:"visible"},classes:"duplicate-monomer-symbol-row"});monomerCards;constructor(t,e,n,i){this.monomerSymbol=t,this.monomers=e,this.monomerCards=e.map((t=>new Gn(t)));const o=s.divH([],{style:{overflowX:"auto",width:"100%"}}),r=s.h1(t,{style:{lineHeight:"2em",fontSize:"1.5em",marginRight:"20px",width:"100px",overflow:"hidden",textOverflow:"elipsis"}});s.tooltip.bind(r,t),this.root.appendChild(r),this.root.appendChild(o),this.monomerCards.forEach((t=>{t.root.onclick=()=>{this.monomerCards.forEach((t=>t.selected=!1)),t.selected=!0,i(t.monomer)},n&&t.monomer===n&&(t.selected=!0),o.appendChild(t.root)}))}render(){this.monomerCards.forEach((t=>t.render()))}}class Dn{monomerCardRows=[];saveSettingsPromise=Promise.resolve();searchInput;_root;monomers;settings;filteredMonomerRows=[];static _instance;vv;static async getInstance(){return Dn._instance||(Dn._instance=new Dn,await Dn._instance.refresh(),(await dn.getInstance()).getMonomerLib().onChanged.subscribe((async()=>await Dn._instance.refresh()))),Dn._instance.refresh(),Dn._instance}async refresh(){this.settings=await(0,Nt.ub)();const t=await dn.getInstance();await t.awaitLoaded(),await t.loadLibrariesPromise,this.monomers=t.duplicateMonomers,this.monomerCardRows=[];for(const e in this.monomers)for(const n in this.monomers[e]){const i=this.settings.duplicateMonomerPreferences?.[e]?.[n]??null,o=i?this.monomers[e][n].find((t=>t.lib?.source===i))??null:null;this.monomerCardRows.push(new Fn(n,this.monomers[e][n],o,(async i=>{this.saveSettingsPromise=this.saveSettingsPromise.then((async()=>{i.lib?.source&&(this.settings.duplicateMonomerPreferences=this.settings.duplicateMonomerPreferences??{},this.settings.duplicateMonomerPreferences[e]=this.settings.duplicateMonomerPreferences[e]??{},this.settings.duplicateMonomerPreferences[e][n]=i.lib.source,await(0,Nt.Eu)(this.settings),r.shell.info(`Monomer '${i.name}' from source '${i.lib.source}' selected for symbol '${n}'.`),t.assignDuplicatePreferances(this.settings))}))})))}if(this.filteredMonomerRows=this.monomerCardRows,this.vv)this.vv.setData(this.filteredMonomerRows.length,(t=>(this.filteredMonomerRows[t].render(),this.filteredMonomerRows[t].root)));else{this.vv=s.virtualView(this.monomerCardRows.length,(t=>(this.monomerCardRows[t].render(),this.monomerCardRows[t].root))),this.vv.root.classList.add("duplicate-monomers-virtual-view"),this.searchInput=s.input.string("Search",{placeholder:"Monomer Symbol",value:"",onValueChanged:()=>t(this.searchInput.value)}),this.searchInput.root.style.justifyContent="center",this.searchInput.input.style.width="200px",this._root=s.divV([s.h1("Manage Duplicate Monomer Symbols",{style:{textAlign:"center"}}),this.searchInput.root,s.divV([this.vv.root],{style:{overflowY:"auto",height:"100%"}})],{style:{height:"100%"}});const t=t=>{this.filteredMonomerRows=this.monomerCardRows.filter((e=>e.monomerSymbol.toLowerCase().includes(t.toLowerCase()))),this.vv.setData(this.filteredMonomerRows.length,(t=>(this.filteredMonomerRows[t].render(),this.filteredMonomerRows[t].root)))}}}constructor(){}get root(){return this._root}}async function Bn(){await jn.showDialog()}async function Vn(t=!0){return await qn.showView(t)}class Wn{_fileManager;_widget;get widget(){return this._widget}constructor(){}static instancePromise;static async getInstance(){return void 0===Wn.instancePromise&&(Wn.instancePromise=(async()=>{const t=new Wn,e=await(0,bt.pj)();return t._fileManager=await e.getFileManager(),t._widget=await t.createWidget(),t})()),Wn.instancePromise}static async reloadWidget(){const t=await Wn.getInstance();t._widget=await t.createWidget()}async createWidget(){const t=await this.getWidgetContent();return(await(0,bt.pj)()).eventManager.addLibraryFileRequested$.subscribe((()=>this.promptToAddLibraryFiles())),new a.Widget(t)}async getWidgetContent(){const t=await Un.createControlsForm();return mn()(t).addClass("monomer-lib-controls-form"),setTimeout((()=>{t&&mn()(t)&&mn()(t).removeClass("ui-form-condensed")}),200),s.divV([t])}async promptToAddLibraryFiles(){a.Utils.openFile({accept:".json",open:async t=>{const e=await t.text(),n=t.name,i=a.TaskBarProgressIndicator.create(`Adding ${n} as a monomer library`);try{await this._fileManager.addLibraryFile(e,n)}catch(t){r.shell.error(`File ${n} is not a valid monomer library, verify it is aligned to HELM JSON schema.`)}finally{i.close()}}})}}class Un{fileManager;userLibSettings;constructor(t,e){this.fileManager=t,this.userLibSettings=e,this.fileManager.eventManager.updateUIControlsRequested$.subscribe((()=>{this.updateControlsForm()})),this.fileManager.eventManager.librarySelectionRequested$.subscribe((([t,e])=>{this.updateLibrarySelectionStatus(e,t)}))}toLog(){return"LibraryControlsManager<#>"}static async createControlsForm(){to.logger.debug("LibraryControlsForm.createControlsForm(), start");const[t,e]=await Promise.all([(0,bt.pj)().then((t=>t.getFileManager())),await(0,Nt.ub)()]);return new Un(t,e)._createControlsForm()}_createControlsForm(){const t=this.createLibraryControls(),e=s.wideForm(t,void 0);return mn()(e).addClass("monomer-lib-controls-form"),e}updateControlsForm(){const t=this._createControlsForm();mn()(".monomer-lib-controls-form").replaceWith(t)}createLibraryControls(){return this.fileManager.getValidLibraryPaths().map((t=>this.createLibInput(t)))}createLibInput(t){const e=`${this.toLog()}.createLibInput()`;to.logger.debug(`${e}, libFileName = '${t}', start`);const n=!this.userLibSettings.exclude.includes(t),i=s.input.bool(t,{value:n,onValueChanged:()=>{this.fileManager.eventManager.updateLibrarySelectionStatus(t,i.value)}});s.tooltip.bind(i.root,`Include monomers from ${t}`);const o=s.iconFA("trash-alt",(()=>this.promptForLibraryDeletion(t))),a=s.icons.edit((async()=>{r.shell.v=await(await Tn.getInstance()).getViewRoot(t)}),"Edit monomer library");return s.tooltip.bind(o,`Delete ${t}`),i.addOptions(a),i.addOptions(o),to.logger.debug(`${e}, libFileName = '${t}', end`),i}async updateLibrarySelectionStatus(t,e){this.updateLibrarySettings(t,e),await(0,Nt.Eu)(this.userLibSettings);const n=await(0,bt.pj)();await n.loadMonomerLib(!0),r.shell.info("Monomer library user settings saved")}updateLibrarySettings(t,e){t?this.userLibSettings.exclude=this.userLibSettings.exclude.filter((t=>t!==e)):this.userLibSettings.exclude.includes(e)||this.userLibSettings.exclude.push(e)}promptForLibraryDeletion(t){s.dialog("Warning").add(s.divText(`Delete file ${t}?`)).onOK((async()=>{try{const e=a.TaskBarProgressIndicator.create(`Deleting ${t} library`);await this.updateLibrarySelectionStatus(!1,t),await this.fileManager.deleteLibraryFile(t),e.close()}catch(e){console.error(e),r.shell.error(`Failed to delete ${t} library`)}})).showModal(!1)}}class jn{constructor(){}static _instance;dialog;closeDialogSubject$=new h.Subject;static async showDialog(){jn._instance||(jn._instance=new jn,jn._instance.closeDialogSubject$.subscribe((()=>{jn._instance.dialog=void 0}))),jn._instance.dialog||(jn._instance.dialog=await jn._instance.getDialog()),jn._instance.dialog.show()}async getDialog(){const t=un.getInstance(),e=(await Wn.getInstance()).widget,n=s.dialog({title:"Manage monomer libraries",helpUrl:"/help/datagrok/solutions/domains/bio/bio.md#manage-monomer-libraries"});mn()(n.root).css("width","350px"),n.clear(),n.addButton("Add",(()=>t.addLibraryFile()),void 0,"Upload new HELM monomer library"),n.add(e);const i=n.onClose.subscribe((()=>{this.closeDialogSubject$.next(),i.unsubscribe()}));return n}}class qn{constructor(){}static _instance;static viewName="Manage Monomer Libraries";_view;_duplicateManager;libManager;async getView(t=!0){const e=un.getInstance(),n=(await Wn.getInstance()).widget,i=s.bigButton("Add",(()=>e.addLibraryFile()),"Upload new HELM monomer library"),o=s.bigButton("Merge",(()=>{this.mergeSelectedLibs()}),"Merge selected libraries into one"),l=s.splitH([s.divV([n.root,s.buttonsInput([i,o])],{classes:"ui-form"}),this._duplicateManager.root],{style:{width:"100%",height:"100%"}},!0);if(this._view)try{this._view.subs.forEach((t=>t.unsubscribe())),this._view.detach(),this._view.close()}catch(t){}return this._view=a.View.fromRoot(l),this._view.name=qn.viewName,t&&r.shell.addView(this._view),s.tools.waitForElementInDom(l).then((()=>{setTimeout((()=>{const t=Array.from(l.children).filter((t=>t.classList.contains("ui-box")));if(2!==t.length)return;const[e,n]=t,i=e.getBoundingClientRect().width+n.getBoundingClientRect().width,o=.3*i;e.style.width=`${o}px`;const r=i-o;n.style.width=`${r}px`}),100),this._view.subs.push(r.events.onCurrentViewChanged.subscribe((()=>{try{const t=qn._instance;t&&t._view&&r.shell.v&&"id"in r.shell.v&&r.shell.v.id===t._view.id&&t._duplicateManager?.refresh()}catch(t){console.error(t)}})))})),this._view}static async showView(t=!0){return qn._instance||(qn._instance=new qn),qn._instance._duplicateManager||(qn._instance._duplicateManager=await Dn.getInstance()),qn._instance.libManager||(qn._instance.libManager=await dn.getInstance()),t&&qn._instance._view&&Array.from(r.shell.views).find((t=>t.id&&t.id===qn._instance._view.id))?(r.shell.v=qn._instance._view,await qn._instance._duplicateManager.refresh(),qn._instance._view):(qn.closeExistingViews(),qn._instance.getView(t))}static closeExistingViews(){Array.from(r.shell.views).filter((t=>t.name===qn.viewName)).forEach((t=>t.close()))}async mergeSelectedLibs(){const t="Library with this name already exists",e=await dn.getInstance();if(await e.awaitLoaded(),await e.loadLibrariesPromise,!e.duplicatesHandled)return void r.shell.warning("Selected libraries contain repeating symbols with different monomers.\n Please choose the correct monomer for each symbol using duplicate monomomer manager.");const n=e.getBioLib().toJSON(),i=s.dialog("Merge selected libraries"),o=s.input.string("Library Name",{placeholder:"Enter new library name",nullable:!1,onValueChanged:()=>{const e=h(o.value);i.getButton("Download")?.classList?.toggle("d4-disabled",!!e&&e!==t),i.getButton("Save")?.classList?.toggle("d4-disabled",!!e)}}),l=(await this.libManager.getFileManager()).getValidLibraryPaths();function c(){let t=o.value;return t.endsWith(".json")||(t+=".json"),t}function h(e){return e&&e.trim()?e.endsWith(".json")&&l.includes(e)||l.includes(e+".json")?t:null:"Library name cannot be empty"}o.addValidator(h),i.add(o).add(s.divText(`Total monomers: ${n.length}`)).addButton("Download",(()=>{a.Utils.download(c(),JSON.stringify(n))})).addButton("Save",(async()=>{i.close();const t=c(),e=JSON.stringify(n),o=await this.libManager.getFileManager();this._view&&s.setUpdateIndicator(this._view.root,!0);try{await o.addLibraryFile(e,t,!1);const n=await(0,Nt.ub)();n.exclude=l,await(0,Nt.Eu)(n),await this.libManager.loadLibraries(!0),await Wn.reloadWidget()}catch(e){r.shell.error(`Failed to save library ${t}. see console for details.`),console.error(e)}finally{this._view&&s.setUpdateIndicator(this._view.root,!1)}})).show(),i.getButton("Download")?.classList?.add("d4-disabled"),i.getButton("Save")?.classList?.add("d4-disabled")}}var zn,Yn=function(t,e,n,i){return new(n||(n=Promise))((function(o,r){function s(t){try{l(i.next(t))}catch(t){r(t)}}function a(t){try{l(i.throw(t))}catch(t){r(t)}}function l(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(s,a)}l((i=i.apply(t,e||[])).next())}))};class Kn{_setBreadcrumbsInViewName(){var t,e;const n=["Home","Demo",...(null!==(t=this._path)&&void 0!==t?t:"").split("/")],i=s.breadcrumbs(n);if(i.onPathClick.subscribe((t=>Yn(this,void 0,void 0,(function*(){const e=t[t.length-1];if(e===i.path[i.path.length-1])return;const n=r.shell.browsePanel.mainTree.getOrCreateGroup("Apps").getOrCreateGroup("Demo");n.currentItem="Demo"===e?n:n.items.find((t=>t.text===e))})))),r.shell.v){if(0!==i.path.length&&"Home"===i.path[0]){const t=s.iconFA("home",(()=>{r.shell.v.close(),r.shell.v=a.View.createByType(a.VIEW_TYPE.HOME)}));t.classList.add("demo-breadcrumbs-home-element"),i.root.firstElementChild.replaceWith(t)}const t=null===(e=r.shell.v.ribbonMenu.root.parentElement)||void 0===e?void 0:e.getElementsByClassName("d4-ribbon-name")[0];t&&(t.textContent="",t.appendChild(i.root))}}constructor(t,e,n=!1,i){var o,r;this.name="",this.description="",this._isAutomatic=!1,this._autoStartFirstStep=!1,this._currentStep=0,this._isStopped=!1,this._isCancelled=!1,this._isStepProcessed=!1,this._root=s.div([],{id:"demo-script",classes:"tutorials-root tutorials-track demo-app-script"}),this._steps=[],this._mainHeader=s.panel([],"tutorials-main-header"),this._header=s.h2(""),this._headerDiv=s.divH([],"tutorials-root-header"),this._stopStartBtn=s.button(s.iconFA("pause"),(()=>Yn(this,void 0,void 0,(function*(){return yield this._changeStopState()}))),"Play / pause"),this._restartBtn=s.button(s.iconFA("redo"),(()=>Yn(this,void 0,void 0,(function*(){return yield this._restartScript()}))),"Restart"),this._nextStepBtn=s.button(s.iconFA("play"),(()=>Yn(this,void 0,void 0,(function*(){this._isStepProcessed||(yield this._nextStep())}))),"Next step"),this._activity=s.panel([],"tutorials-root-description"),this._progressDiv=s.divV([],"tutorials-root-progress"),this._progress=s.element("progress"),this._progressSteps=s.divText(""),this._closeBtn=s.button(s.iconFA("chevron-left"),(()=>this._closeDock()),"Back to demo"),this.DEMO_PATH="apps/Tutorials/Demo",this.name=t,this.description=e,this._isAutomatic=n,this._autoStartFirstStep=null!==(o=null==i?void 0:i.autoStartFirstStep)&&void 0!==o&&o,this._path=null!==(r=null==i?void 0:i.path)&&void 0!==r?r:"",this._progress.max=0,this._progress.value=1,Kn.currentObject=this}get steps(){return this._steps}get stepNumber(){return this._steps.length}_addHeader(){this._createHeaderDiv(),this._createProgressDiv(),this._mainHeader.append(this._headerDiv,this._progressDiv)}_createHeaderDiv(){this._header.innerText=this.name,this._headerDiv.append(this._closeBtn),this._headerDiv.append(this._header),this._nextStepBtn.firstChild.className="grok-icon fas fa-play",this._headerDiv.append(this._isAutomatic?this._stopStartBtn:this._nextStepBtn)}_createProgressDiv(){this._progress.max=this.stepNumber,this._progressDiv.append(this._progress),this._progressSteps=s.divText(`Step: ${this._progress.value} of ${this.stepNumber}`),this._progressDiv.append(this._progressSteps)}_addDescription(){var t;this._activity.append(s.div(this.description,"tutorials-root-description"));for(let e=0;e<this.stepNumber;e++){let n=s.iconFA("clock");this._isAutomatic||0===e&&(n=s.iconFA("play",(()=>this._nextStep()),"Next step"),n.className="grok-icon fas fa-play");const i=s.div(this._steps[e].name,"grok-tutorial-entry-instruction"),o=s.div(null===(t=this._steps[e].options)||void 0===t?void 0:t.description,"grok-tutorial-step-description hidden"),r=s.divH([n,i],"grok-tutorial-entry");this._activity.append(r,o)}}_initRoot(){r.shell.windows.showContextPanel=!0,r.shell.windows.showHelp=!1,this._node=r.shell.dockManager.dock(this._root,a.DOCK_TYPE.FILL,r.shell.dockManager.findNode(r.shell.browsePanel.root),this.name),this._node.container.containerElement.classList.add("tutorials-demo-script-container"),this._addHeader(),this._root.append(this._mainHeader),this._addDescription(),this._root.append(this._activity)}_setViewParams(){var t;r.shell.v&&(r.shell.v.name=this.name,r.shell.v.path=`${this.DEMO_PATH}/${(null!==(t=this._path)&&void 0!==t?t:"").replaceAll(" ","-")}`,this._setBreadcrumbsInViewName())}_nextStep(){return Yn(this,void 0,void 0,(function*(){var t,e;this._isStepProcessed=!0,this._isAutomatic||(this._nextStepBtn.classList.add("disabled"),this._nextStepBtn.firstChild.classList.add("fa-disabled"));const n=this._activity.getElementsByClassName("grok-tutorial-entry")[this._currentStep],i=this._activity.getElementsByClassName("grok-icon")[this._currentStep],o=this._activity.getElementsByClassName("grok-tutorial-step-description")[this._currentStep];i.className="grok-icon far fa-spinner-third fa-spin",o.classList.remove("hidden"),o.classList.add("visible");const l=n,c=(null===(t=this._steps[this._currentStep].options)||void 0===t?void 0:t.delay)?null===(e=this._steps[this._currentStep].options)||void 0===e?void 0:e.delay:2e3;try{this._setViewParams(),yield this._steps[this._currentStep].func(),this._setViewParams()}catch(t){console.error(t)}this._scrollTo(this._root,l.offsetTop-this._mainHeader.offsetHeight),this._isAutomatic&&(yield this._countdown(n,i,c),yield(0,te.cb)(c));const h=s.iconFA("check");if(i.replaceWith(h),h.className="grok-icon far fa-check",this._progress.value++,this._progressSteps.innerText=`Step: ${this._progress.value} of ${this.stepNumber}`,this._currentStep++,this._isStepProcessed=!1,this._currentStep!==this.stepNumber){if(!this._isAutomatic){const t=this._activity.getElementsByClassName("grok-icon")[this._currentStep],e=s.iconFA("play",(()=>this._nextStep()),"Next step");e.className="grok-icon fas fa-play",t.replaceWith(e),this._nextStepBtn.classList.remove("disabled"),this._nextStepBtn.firstChild.classList.remove("fa-disabled")}r.shell.v instanceof a.TableView&&(yield r.data.detectSemanticTypes(r.shell.tv.dataFrame))}else this._isAutomatic?this._stopStartBtn.replaceWith(this._restartBtn):this._nextStepBtn.replaceWith(this._restartBtn)}))}_startScript(){return Yn(this,void 0,void 0,(function*(){for(let t=this._currentStep;t<this.stepNumber&&!this._isStopped&&!this._isCancelled;t++)yield this._nextStep()}))}_scrollTo(t,e){t.focus(),t.scrollTop=e}_countdown(t,e,n){return Yn(this,void 0,void 0,(function*(){const i=s.div([],"demo-script-countdown");e.classList.add("hidden");let o=n/1e3;const r=this._createSVGIndicator(o);i.append(r),t.prepend(i);const a=setInterval((()=>{o--,0===o&&(clearInterval(a),i.remove(),e.classList.remove("hidden"),e.classList.add("visible"))}),1e3)}))}_createSVGIndicator(t){const e=document.createElementNS("http://www.w3.org/2000/svg","svg"),n=document.createElementNS("http://www.w3.org/2000/svg","circle");return n.setAttributeNS(null,"cx","7"),n.setAttributeNS(null,"cy","7"),n.setAttributeNS(null,"r","6"),n.setAttributeNS(null,"style",`animation: countdown ${t}s linear infinite forwards`),e.append(n),e}_changeStopState(){return Yn(this,void 0,void 0,(function*(){const t=this._stopStartBtn.getElementsByClassName("grok-icon");t[0].className="grok-icon fas fa-play",this._isStopped=!this._isStopped,this._isStopped||(t[0].className="grok-icon fal fa-pause",this._isStepProcessed||(yield this._startScript()))}))}_restartScript(){return Yn(this,void 0,void 0,(function*(){r.shell.dockManager.close(this._node),this._clearRoot(),this._setInitParams(),yield this.start()}))}_clearRoot(){this._root=s.div([],{id:"demo-script",classes:"tutorials-root tutorials-track demo-app-script"}),this._mainHeader=s.panel([],"tutorials-main-header"),this._header=s.h2(""),this._headerDiv=s.divH([],"tutorials-root-header"),this._activity=s.panel([],"tutorials-root-description"),this._progressDiv=s.divV([],"tutorials-root-progress"),this._progress=s.element("progress"),this._progressSteps=s.divText(""),this._progress.max=0,this._progress.value=1}_setInitParams(){this._currentStep=0,this._isStopped=!1,this._isCancelled=!1,this._stopStartBtn.getElementsByClassName("grok-icon")[0].className="grok-icon fal fa-pause",this._nextStepBtn.classList.remove("disabled")}_closeDock(){r.shell.dockManager.close(this._node),this.cancelScript()}cancelScript(){this._isCancelled=!0,Kn.currentObject=null}step(t,e,n){return this._steps[this.steps.length]={name:t,func:e,options:n},this}start(){return Yn(this,void 0,void 0,(function*(){this._initRoot(),r.shell.v.name===this.name&&(r.shell.v.close(),this._node=r.shell.dockManager.dock(this._root,a.DOCK_TYPE.FILL,r.shell.dockManager.findNode(r.shell.browsePanel.root),this.name)),this._isAutomatic?yield this._startScript():this._autoStartFirstStep&&(yield this._nextStep())}))}}Kn.currentObject=null,function(t){t.X="Embed_X",t.Y="Embed_Y"}(zn||(zn={}));var Zn=n(966),Xn=n(608),Jn=n(1619);class Qn{urlParams;funcName;options;df;view;constructor(t,e,n={}){this.urlParams=t,this.funcName=e,this.options=n}async init(t){this.df=t,await this.buildView()}async buildView(){const t=ot()(this.urlParams.entries()).map((([t,e])=>`${t}=${encodeURIComponent(e)}`)).toArray().join("&");this.view=r.shell.addTableView(this.df),this.view.path=this.view.basePath=`func/${to.name}.${this.funcName}?${t}`;const e={...this.options,sequenceColumnName:"sequence"};for(const[t,n]of this.urlParams.entries())switch(t){case oe.n5.fixWidth:case oe.n5.fitArea:e[t]=["1","on","true"].includes(n.toLowerCase());break;default:e[t]=n}const n=await this.view.dataFrame.plot.fromType("WebLogo",e);this.view.dockManager.dock(n,a.DOCK_TYPE.DOWN,null,"WebLogo",.35)}}class ti{tableInput;seqColInput;funcParamsDiv;get funcParams(){return{table:this.tableInput.value,sequence:this.seqColInput.value}}get paramsUI(){return this.funcParamsDiv}constructor(){this.tableInput=s.input.table("Table",{value:r.shell.tv.dataFrame,onValueChanged:()=>{this.onTableInputChanged()}});const t=this.tableInput.value.columns.bySemType(a.SEMTYPE.MACROMOLECULE);this.seqColInput=s.input.column("Sequence",{table:this.tableInput.value,value:t,filter:t=>t.semType===a.SEMTYPE.MACROMOLECULE}),this.funcParamsDiv=s.inputs([this.tableInput,this.seqColInput],{style:{minWidth:"320px"}})}onTableInputChanged(){this.seqColInput=s.input.column("Sequence",{table:this.tableInput.value,value:this.tableInput.value.columns.bySemType(a.SEMTYPE.MACROMOLECULE)})}}var ei=n(6869);new class{tooltipHandlerTemp="tooltip-handler.Monomer"};class ni extends Vt{constructor(t,e){super(t,e)}render(t,e,n,i,o,r,s){t.save();try{if(!r.isTableCell)return;const s=r.cell?.column&&r.cell.column?.dart&&"true"===r.cell.column.getTag(Rt.Mn.applyToBackground);t.font="12px monospace",t.textBaseline="middle",t.textAlign="center";const a=r.cell.value;if(!a||a==wt._S)return;let l=kt.S$,c="rgb(255, 255, 255)";if(this.monomerLib){const t=this.tableCol.getTag(wt.gp.alphabet),e=t===gt.YI.RNA||t===gt.YI.DNA?ei.o.NUCLEOTIDE:ei.o.AA;if(s){const t=this.monomerLib.getMonomerColors(e,a);l=t?.textcolor??l,c=t?.backgroundcolor??c}else l=this.monomerLib.getMonomerTextColor(e,a)}const h=Math.max(2,Math.floor(.15*i));s&&(t.fillStyle=c,t.fillRect(e,n,i,o)),t.fillStyle=l,t.fillText((0,gt.zS)(a,h),e+i/2,n+o/2,i)}finally{t.restore()}}onMouseMove(t,e){if(t.grid.dart!=this.gridCol?.grid.dart||t.gridColumn.dart!=this.gridCol?.dart||!t.tableColumn||!t.isTableCell)return!1;const n=t.tableColumn.getTag(wt.gp.alphabet),i=t.cell.value,o=t.grid.canvas.getBoundingClientRect(),r=t.bounds.right+o.left-4,a=t.bounds.bottom+o.top-4;if(i==wt._S)return s.tooltip.show(s.divText("gap"),r,a),!0;if(!this.monomerLib)return s.tooltip.show(s.divText("Monomer library is not available."),r,a),!0;const l=n===gt.YI.RNA||n===gt.YI.DNA?ei.o.NUCLEOTIDE:ei.o.AA,c=this.monomerLib.getTooltip(l,i);return s.tooltip.show(c,r,a),!0}async awaitRendered(t=1e4,e=`${t} timeout`){return Promise.resolve()}static getOrCreate(t){const[e,n,i]=(0,Gt.BG)(t);let o=i.rendererBack;return o||(o=i.rendererBack=new ni(e,n)),o}}class ii extends a.GridCellRenderer{get name(){return Wt.uF.MONOMER}get cellType(){return Wt.uF.MONOMER}get defaultHeight(){return 15}get defaultWidth(){return 40}render(t,e,n,i,o,r,s){ni.getOrCreate(r).render(t,e,n,i,o,r,s)}onMouseMove(t,e){ni.getOrCreate(t).onMouseMove(t,e)}}class oi{constructor(t,e,n=""){this.target=t,this.debugEnabled=e,this.prefix=n}error(t,e,n){return this.target.error(this.prefix+t,e,n)}warning(t,e){return this.target.warning(this.prefix+t,e)}info(t,e){return this.target.info(this.prefix+t,e)}debug(t,e){if(this.debugEnabled)return this.target.debug(this.prefix+t,e)}}class ri extends Map{_onPropertyChanged=new h.Subject;get onPropertyChanged(){return this._onPropertyChanged}get fontSize(){const t=super.get("FontSize");return t&&!isNaN(t)?Number.parseInt(t):12}set fontSize(t){super.set("FontSize",t),this._onPropertyChanged.next("FontSize")}get maxMonomerLength(){const t=super.get("MaxMonomerLength");return"long"===t?null:parseInt(t)}set maxMonomerLength(t){const e=null===t?"long":t.toString();super.set("MaxMonomerLength",e),this._onPropertyChanged.next("MaxMonomerLength")}get tooltipWebLogo(){return super.get("TooltipWebLogo")}set tooltipWebLogo(t){super.set("TooltipWebLogo",t),this._onPropertyChanged.next("TooltipWebLogo")}get defaultSeparator(){return super.get("DefaultSeparator")}set defaultSeparator(t){if(1!==t.length)throw new Error("The separator must be of length one.");super.set("DefaultSeparator",t),this._onPropertyChanged.next("DefaultSeparator")}constructor(t){super(Object.entries(t))}}class si extends a.Package{_properties;_seqHelper;get seqHelper(){if(!this._seqHelper)throw new Error("Package Bio .seqHelper is not initialized.");return this._seqHelper}_monomerLib;get monomerLib(){if(!this._monomerLib)throw new Error("Package Bio .monomerLib is not initialized.");return this._monomerLib}_monomerSets;get monomerSets(){if(!this._monomerSets)throw new Error("Package Bio .monomerSets is not initialized.");return this._monomerSets}_rdKitModule;get rdKitModule(){if(!this._rdKitModule)throw new Error("Package Bio .rdKitModule is not initialized.");return this._rdKitModule}get properties(){return this._properties}set properties(t){this._properties=t}_initialized=!1;get initialized(){return this._initialized}constructor(t={debug:!1}){super(),super._logger=new oi(super.logger,t.debug)}completeInit(t,e,n,i){this._seqHelper=t,this._monomerLib=e,this._monomerSets=n,this._rdKitModule=i,this._initialized=!0}handleErrorUI(t){const[e,n]=(0,Ct.AP)(t);r.shell.error(e),this.logger.error(e,void 0,n)}}var ai=n(5999),li={};li.styleTagTransform=A(),li.setAttributes=b(),li.insert=g().bind(null,"head"),li.domAPI=m(),li.insertStyleElement=w(),d()(ai.A,li),ai.A&&ai.A.locals&&ai.A.locals;var ci=n(6307);class hi extends a.Widget{seqCol;seqHelper;viewed=!1;wlViewer=null;constructor(t,e){super(s.divV([])),this.seqCol=t,this.seqHelper=e}async init(){const t=this.seqHelper.getSeqHandler(this.seqCol),e=to.properties.tooltipWebLogo,n=this.seqCol.getTag(ee.gp.tooltipWebLogo);!1===e||["false","off","disable","disabled"].includes(n)||(this.wlViewer=await this.seqCol.dataFrame.plot.fromType("WebLogo",{sequenceColumnName:this.seqCol.name,backgroundColor:0,positionHeight:"Entropy",positionWidth:t.getAlphabetIsMultichar()?24:16,fixWidth:!0,fitArea:!1,positionNames:"",endPositionName:"50"}),this.wlViewer.root.style.height="50px",this.root.appendChild(this.wlViewer.root),this.root.style.width="100%")}detach(){this.wlViewer&&(this.wlViewer.detach(),this.wlViewer=null),super.detach()}}function ui(t,e,n,i){const o=to.seqHelper.getSeqHandler(t);let r=null,s=null;for(let t=0;t<o.posList.length;++t)o.posList[t]==e&&(r=t),o.posList[t]==n&&(s=t);if(null===r&&null!==e)throw new Error(`Start position ${e} not found.`);if(null===s&&null!==n)throw new Error(`End position ${n} not found.`);if(o.posList.length<s)throw new Error(`End position ${s} exceeds positions length`);const a=i||`${t.name}: (${e??""}-${n??""})`;return o.getRegion(r,s,a)}const di={df:a.DataFrame.fromCsv("seq,value\nATCCGTCGT,0.5\nTGTTCGTCA,0.4\nATGGTCGTA,0.7\nATCCGTGCA,0.1"),colName:"seq",positionNames:["1","1A","1C","2","4","4A","4B","5","6"].join(gt.z1),regions:[{name:"first region",start:"1",end:"2"},{name:"second region",start:"1C",end:"4"},{name:"overlapping second",start:"1C",end:"4A"},{name:"whole sequence",start:"1",end:"6"},{name:"bad start",start:"0",end:"6"},{name:"bad end",start:"1",end:"4C"},{name:"bad start & end",start:"0",end:"4C"}]};class pi{urlParams;funcName;view;data;constructor(t,e){this.urlParams=t,this.funcName=e}async init(t){this.data=t??di;const e=this.data.df.getCol(this.data.colName);this.data.positionNames&&e.setTag(gt.gp.positionNames,this.data.positionNames),this.data.regions&&e.setTag(gt.gp.regions,JSON.stringify(this.data.regions)),await this.buildView()}async buildView(){await r.data.detectSemanticTypes(this.data.df),this.view=r.shell.addTableView(this.data.df),this.view.path=this.view.basePath=`func/${to.name}.${this.funcName}`;const t=await this.view.dataFrame.plot.fromType("WebLogo",{sequenceColumnName:this.data.colName});this.view.dockManager.dock(t,a.DOCK_TYPE.DOWN,null,"WebLogo",.35)}}class mi{call;seqHelper;inputs=new class{table;sequence;region;start;end;name};constructor(t,e){this.call=t,this.seqHelper=e;const n=t=>this.call.inputParams[t].property.description;this.inputs.table=s.input.table("Table",{value:this.call.inputParams.table.value??r.shell.tv.dataFrame});const i=this.call.inputParams.sequence.value??this.inputs.table.value.columns.bySemType(a.SEMTYPE.MACROMOLECULE);this.inputs.sequence=s.input.column("Sequence",{table:r.shell.tv.dataFrame,value:i,onValueChanged:this.sequenceInputChanged.bind(this),filter:t=>t.semType===a.SEMTYPE.MACROMOLECULE}),this.inputs.start=s.input.choice("Start",{onValueChanged:this.startInputChanged.bind(this)}),this.inputs.end=s.input.choice("End",{onValueChanged:this.endInputChanged.bind(this)}),this.inputs.region=s.input.choice("Region",{value:null,items:[],onValueChanged:this.regionInputChanged.bind(this)}),this.inputs.name=s.input.string("Column name",{value:this.getDefaultName(),onValueChanged:this.nameInputChanged.bind(this),clearIcon:!0}),this.inputs.name.onInput.subscribe((()=>this.nameInputInput.bind(this)));for(const t in this.call.inputParams)s.tooltip.bind(this.inputs[t].captionLabel,n(t));this.sequenceInputChanged()}sequenceInputChanged(){const t=this.inputs.sequence.value;t&&this.seqHelper.getSeqHandler(t),this.updateRegionItems(),this.updateStartEndInputItems(),this.updateRegion(!0),this.updateNameInput()}fixRegion=!1;regionInputChanged(){this.fixRegion=!0;try{const t=this.inputs.region.stringValue,e=t?JSON.parse(t):null;if(null!==e)this.inputs.start.value=e?.start,this.inputs.end.value=e?.end;else{const t=this.seqHelper.getSeqHandler(this.inputs.sequence.value);this.inputs.start.value=t.posList[0],this.inputs.end.value=t.posList[t.posList.length-1]}}finally{this.fixRegion=!1}}startInputChanged(){this.updateRegion(!1),this.updateNameInput()}endInputChanged(){this.updateRegion(!1),this.updateNameInput()}nameInputChanged(){this.defaultNameUpdating||(this.defaultName=!1)}nameInputInput(){this.inputs.name.value||(this.defaultName=!0,this.inputs.name.input.focus())}updateStartEndInputItems(){const t=this.inputs.sequence.value,e=t?this.seqHelper.getSeqHandler(t):null,n=this.inputs.start.input,i=this.inputs.end.input;for(let t=n.options.length-1;t>=0;--t)n.options.remove(t);for(let t=i.options.length-1;t>=0;--t)i.options.remove(t);for(const t of e?.posList??[]){const e=document.createElement("option"),o=document.createElement("option");e.text=o.text=t,e.value=o.value=t,n.options.add(e),i.options.add(o)}n.value=e?.posList[0]??"",i.value=e?.posList[e?.posList.length-1]??""}updateRegionItems(){const t=this.inputs.sequence.value,e=t?t.getTag(gt.gp.regions):null,n=e?JSON.parse(e):null,i=this.inputs.region.input;for(let t=i.options.length-1;t>=0;--t)i.options.remove(t);const o=document.createElement("option");if(o.text="",o.value=JSON.stringify(null),i.options.add(o),null!=n){this.inputs.region.root.style.removeProperty("display");for(const t of n){const e=document.createElement("option");e.text=`${t.name}: ${t.start}-${t.end}`,e.value=JSON.stringify(t),i.options.add(e)}}else this.inputs.region.root.style.display="none"}updateRegion(t){const e=this.inputs.start.stringValue??"",n=this.inputs.end.stringValue??"";if(!this.fixRegion){const t=this.inputs.region.input;t.selectedIndex=-1;for(let i=t.options.length-1;i>=0;--i){const o=t.options[i],r=JSON.parse(o.value);r&&e===r.start&&n===r.end&&(t.selectedIndex=i)}}}defaultName=!0;defaultNameUpdating=!1;updateNameInput(){this.defaultNameUpdating=!0;try{this.defaultName&&(this.inputs.name.value=this.getDefaultName())}finally{this.defaultNameUpdating=!1}}getDefaultName(){const t=this.inputs.region.stringValue,e=t?JSON.parse(t):null,n=this.inputs.sequence.value,i=this.inputs.start.stringValue??"",o=this.inputs.end.stringValue??"";return null!=e?`${n.name}(${e.name}): ${e.start}-${e.end}`:`${n?.name}: (${i}-${o})`}getParams(){return{table:this.inputs.table.value,sequence:this.inputs.sequence.value,start:this.getStart(),end:this.getEnd(),name:this.getName()}}getStart(){return this.inputs.start.stringValue}getEnd(){return this.inputs.end.stringValue}getName(){const t=this.inputs.name.stringValue;return""==t?null:t}dialog(){const t=s.inputs(Object.values(this.inputs),{style:{minWidth:"320px"}});s.dialog({title:"Get Region"}).add(t).onOK((()=>{(async()=>{const t=this.getParams();await this.call.func.prepare(t).call(!0)})().catch((t=>{to.handleErrorUI(t)}))})).show()}widget(){const t=s.inputs(Object.entries(this.inputs).filter((([t,e])=>!["table","sequence"].includes(t))).map((([t,e])=>e))),e=s.button("Get Region",(()=>{(async()=>{const t=this.getParams();await this.call.func.prepare(t).call(!0)})().catch((t=>{to.handleErrorUI(t)}))}));return a.Widget.fromRoot(s.divV([t,s.div(e)]))}}var fi=n(8754);async function gi(t,e,n,i,o){const r=await async function(t,e,n,i,o){const r=(0,vt.R)(e,o),s=o.getSeqHandler(e).getNewColumnFromList("ref",[n]),l=o.getSeqHandler(s).getSplitted(0),c=i===ft.IDENTITY?function(t,e){const n=e.columns.length,i=new Array(n),o=new Array(n),r=new Array(n);for(let s=0;s<n;++s){const n=e.columns.byIndex(s);i[s]=n.getRawData(),o[s]=n.categories.indexOf("");const a=s<t.length?t.getOriginal(s):wt._S;r[s]=n.categories.indexOf(a)}const s=a.Column.float("Identity",e.rowCount),l=s.getRawData();for(let n=0;n<e.rowCount;++n){l[n]=0;for(let e=0;e<t.length;++e)(i[e]?i[e][n]:0)===r[e]&&++l[n];l[n]/=t.length}return s}(l,r):i===ft.SIMILARITY?await async function(t,e,n){const i=e.columns.toList();return await(0,bt.uL)(i,t,n)}(l,r,o):null;if(null===c)throw new Error(`In bio library: Unknown sequence scoring method: ${i}`);return c.name=t.columns.getUnusedName(c.name),t.columns.add(c),c}(t,e,n,i,o);for(let t=0;t<r.length;t++)e.isNone(t)&&r.set(t,null,!1);return r}var yi=n(294),bi=n(330);const vi=OCL;var wi=n(9099);class Ci{monomerSymbol;constructor(t){this.monomerSymbol=t}atoms;bonds;rGroups;get atomCount(){return this.atoms.count}get bondCount(){return this.bonds.count}shiftR1GroupToOrigin(){const t=this.rGroups.getAtomicIdx(1);if(null===t)throw new Error(`Cannot find R1 group for monomer ${this.monomerSymbol}`);const{x:e,y:n}=this.atoms.atomCoordinates[t];this.atoms.shift({x:-e,y:-n})}alignR2AlongX(){const t=this.rGroups.getAtomicIdx(2);if(null===t)throw new Error(`Cannot find R2 group for monomer ${this.monomerSymbol}`);const e=this.atoms.atomCoordinates[t],n=e.y/e.x,i=Math.atan(n);if(isNaN(i))throw new Error(`Cannot calculate angle for R2 group for monomer ${this.monomerSymbol}`);this.rotateCoordinates(-i)}shiftMonomerToDefaultPosition(){this.shiftR1GroupToOrigin(),null!==this.rGroups.getAtomicIdx(2)&&this.alignR2AlongX()}deleteBondLineWithSpecifiedRGroup(t){this.rGroups.deleteBondLineWithSpecifiedRGroup(t)}shiftCoordinates(t){this.atoms.shift(t)}rotateCoordinates(t){this.atoms.rotate(t)}getBondLines(){return this.bonds.getBondLines()}getAtomLines(){return this.atoms.atomLines}removeRGroups(t){this.rGroups.removeRGroups(t)}replaceRGroupWithAttachmentAtom(t,e){this.rGroups.replaceRGroupWithAttachmentAtom(t,e)}getAttachmentAtomByRGroupId(t){return this.rGroups.getAttachmentAtomIdByRGroupId(t)}shiftBonds(t){this.bonds.shift(t)}capRGroups(t){this.rGroups.capRGroups(t)}}var Ai=n(6956);class Si{atoms;bonds;constructor(t,e,n){this.atoms=e,this.bonds=n,this.rGroupIdToAtomicIndexMap=t.getRGroupIdToAtomicIdxMap()}rGroupIdToAtomicIndexMap;rGroupBondPositionMap=new Map;getAtomicIdx(t){const e=this.rGroupIdToAtomicIndexMap.get(t);return void 0===e?null:e}removeRGroupsFromAtomBlock(t){t.forEach((t=>{if(void 0===this.rGroupIdToAtomicIndexMap.get(t))throw new Error(`Cannot find atomic index for R group ${t}`)}));const e=Array.from(this.rGroupIdToAtomicIndexMap.entries()).filter((([e,n])=>t.includes(e))).map((([t,e])=>e));this.atoms.deleteAtoms(e)}removeRGroups(t){this.removeRGroupsFromAtomBlock(t),t.forEach((t=>{const e=this.replaceRGroupInBondsByDummy(t);this.rGroupBondPositionMap.set(t,e)}))}replaceRGroupInBondsByDummy(t){const e=this.rGroupIdToAtomicIndexMap.get(t);if(this.rGroupBondPositionMap.has(t))throw new Error(`R group ${t} is already handled`);const n=this.bonds.getPositionsInBonds(e+1);if(0===n.length)throw new Error(`Cannot find position for R group ${t}`);if(n.length>1)throw new Error(`More than one position for R group ${t}`);const i=n[0];return this.bonds.replacePositionsInBondsByDummy([i]),this.bonds.removeAtomIdFromBonds(e+1),this.removeRGroupFromAtomicIdxMap(t,e),i}removeRGroupFromAtomicIdxMap(t,e){this.rGroupIdToAtomicIndexMap.delete(t);for(const[t,n]of this.rGroupIdToAtomicIndexMap)n>e&&this.rGroupIdToAtomicIndexMap.set(t,n-1)}deleteBondLineWithSpecifiedRGroup(t){const e=this.rGroupBondPositionMap.get(t);if(!e)throw new Error(`Cannot find position for R group ${t}`);const{bondLineIdx:n}=e;this.bonds.deleteBondLines([n]),this.rGroupBondPositionMap.delete(t),this.rGroupIdToAtomicIndexMap.delete(t),this.rGroupBondPositionMap.forEach((t=>{t.bondLineIdx>n&&(t.bondLineIdx-=1)}))}replaceRGroupWithAttachmentAtom(t,e){const n=this.rGroupBondPositionMap.get(t);if(!n)throw new Error(`Cannot find position for R group ${t}`);const{bondLineIdx:i,nodeIdx:o}=n;this.bonds.bondedAtoms[i][o]=e}getAttachmentAtomIdByRGroupId(t){const e=this.rGroupBondPositionMap.get(t);if(!e)throw new Error(`Cannot find position for R group ${t}`);const{bondLineIdx:n,nodeIdx:i}=e;return this.bonds.bondedAtoms[n][(i+1)%2]}capRGroups(t){this.rGroupIdToAtomicIndexMap.forEach(((e,n)=>{const i=t[n-1];i===Ai.mP?(this.removeRGroups([n]),this.deleteBondLineWithSpecifiedRGroup(n)):this.atoms.replaceRGroupSymbolByElement(e,i)}))}}class xi{coordinates=[];rawAtomLines=[];get count(){return this.coordinates.length}get atomCoordinates(){return this.coordinates}replaceRGroupSymbolByElement(t,e){this.rawAtomLines[t]=this.rawAtomLines[t].replace("R#",e)}deleteAtoms(t){this.coordinates=this.coordinates.filter(((e,n)=>!t.includes(n))),this.rawAtomLines=this.rawAtomLines.filter(((e,n)=>!t.includes(n)))}shift(t){this.coordinates=this.coordinates.map((e=>{const n=e.x+t.x,i=e.y+t.y;if(isNaN(n)||isNaN(i))throw new Error(`Cannot shift coordinates by ${t.x}, ${t.y}`);return{x:n,y:i}}))}rotate(t){this.coordinates=this.coordinates.map((e=>{const n=e.x,i=e.y,o=n*Math.cos(t)-i*Math.sin(t),r=n*Math.sin(t)+i*Math.cos(t);if(isNaN(o)||isNaN(r))throw new Error(`Cannot rotate coordinates by ${t}`);return{x:o,y:r}}))}}class Ei extends xi{constructor(t){super(),this.rawAtomLines=t.getAtomLines(),this.coordinates=this.rawAtomLines.map((t=>({x:parseFloat(t.substring(0,10)),y:parseFloat(t.substring(10,20))})))}get atomLines(){return this.rawAtomLines.map(((t,e)=>{const n=this.coordinates[e];return`${n.x.toFixed(4).padStart(10," ")}${n.y.toFixed(4).padStart(10," ")}${t.substring(20)}`}))}}class Ti{bondedAtomPairs=[];rawBondLines=[];get count(){return this.bondedAtomPairs.length}get bondedAtoms(){return this.bondedAtomPairs}deleteBondLines(t){this.rawBondLines=this.rawBondLines.filter(((e,n)=>!t.includes(n))),this.bondedAtomPairs=this.bondedAtomPairs.filter(((e,n)=>!t.includes(n)))}getPositionsInBonds(t){const e=[];return this.bondedAtomPairs.forEach(((n,i)=>{n.forEach(((n,o)=>{n===t&&e.push({bondLineIdx:i,nodeIdx:o})}))})),e}replacePositionsInBondsByDummy(t,e){void 0===e&&(e=-1),t.forEach((t=>{const{bondLineIdx:n,nodeIdx:i}=t;this.bondedAtomPairs[n][i]=e}))}removeAtomIdFromBonds(t){this.bondedAtomPairs=this.bondedAtomPairs.map((e=>e.map((e=>e>t?e-1:e))))}shift(t){this.bondedAtomPairs=this.bondedAtomPairs.map((e=>e.map((e=>e+t))))}}class _i extends Ti{constructor(t){super(),this.rawBondLines=t.getBondLines(),this.bondedAtomPairs=this.rawBondLines.map((t=>[parseInt(t.substring(0,3)),parseInt(t.substring(3,6))]))}getBondLines(){return this.bondedAtomPairs.map(((t,e)=>{if(t.some((t=>-1===t)))throw new Error(`Bonded pair ${t} contains -1`);return`${t[0].toString().padStart(3," ")}${t[1].toString().padStart(3," ")}${this.rawBondLines[e].substring(6)}`}))}}class Mi extends Ci{constructor(t,e){super(e);const n=$e.getInstance(t);this.atoms=new Ei(n),this.bonds=new _i(n),this.rGroups=new Si(n,this.atoms,this.bonds),this.shiftMonomerToDefaultPosition()}}class Ii extends xi{molfileHandler;constructor(t){super(),this.molfileHandler=t,this.rawAtomLines=t.getAtomLines(),this.coordinates=this.getCoordinates()}getCoordinates(){const t=this.molfileHandler.x,e=this.molfileHandler.y;return Array.from(t).map(((t,n)=>({x:t,y:e[n]})))}get atomLines(){const t=/^(M V30 [^-]*)(-?\d+\.\d+)( )(-?\d+\.\d+)( -?\d+\.\d+.*)$/,e=/\sRGROUPS=\(\d+(\s+\d+)*\)/;return this.rawAtomLines.map(((n,i)=>{const o=this.coordinates[i],r=o.x.toFixed(4)+"00",s=o.y.toFixed(4)+"00";return n.replace(t,((t,e,n,i,o,a)=>e+r+i+s+a)).replace(e,"")}))}replaceRGroupSymbolByElement(t,e){super.replaceRGroupSymbolByElement(t,e);const n=this.rawAtomLines[t].substring(3).split(" ");n.length>7&&(this.rawAtomLines[t]=`M ${n.slice(0,7).join(" ")}`)}}class Li extends Ti{molfileHandler;constructor(t){super(),this.molfileHandler=t,this.rawBondLines=t.getBondLines(),this.bondedAtomPairs=this.getBondedAtomPairs()}getBondedAtomPairs(){return this.molfileHandler.pairsOfBondedAtoms.map((t=>[t[0],t[1]]))}getBondLines(){const t=/^(M\s+V30\s+\d+\s+\d+\s+)(\d+)(\s+)(\d+)(.*)$/;return this.bondedAtomPairs.map(((e,n)=>{if(e.some((t=>-1===t)))throw new Error(`Bonded pair ${e} contains -1`);return this.rawBondLines[n].replace(t,((t,n,i,o,r,s)=>`${n}${e[0]}${o}${e[1]}${s}`))}))}}class Ni extends Ci{constructor(t,e){super(e);const n=$e.getInstance(t);this.atoms=new Ii(n),this.bonds=new Li(n),this.rGroups=new Si(n,this.atoms,this.bonds),this.shiftMonomerToDefaultPosition()}}class Pi{static getInstance(t,e){if($e.isMolfileV2K(t))return new Mi(t,e);if($e.isMolfileV3K(t))return new Ni(t,e);throw new Error("Unsupported molfile version")}}class $i{monomerSymbol;monomerIdx;helm;monomerLib;molfileWrapper;capGroupElements=[];static molfileV2KToV3KCache=new Map;constructor(t,e,n,i,o,r){this.monomerSymbol=t,this.monomerIdx=e,this.helm=n,this.monomerLib=r;const s=this.getLibraryMonomerObject();let a=s.molfile;$e.isMolfileV2K(a)&&(a=this.convertMolfileToV3KFormat(a,t,o)),this.molfileWrapper=Pi.getInstance(a,t),this.capGroupElements=this.getCapGroupElements(s),this.removeRGroups(n.bondedRGroupsMap[e]),this.capRemainingRGroups(),this.shiftCoordinates(i)}get atomCount(){return this.molfileWrapper.atomCount}get bondCount(){return this.molfileWrapper.bondCount}convertMolfileToV3KFormat(t,e,n){if($i.molfileV2KToV3KCache.has(t))return $i.molfileV2KToV3KCache.get(t);let i=null;try{if(i=n.get_mol(t,JSON.stringify({mergeQueryHs:!0})),i){const e=i.get_v3Kmolblock();return $i.molfileV2KToV3KCache.set(t,e),e}throw new Error(`Cannot convert ${e} to molV3000`)}finally{i?.delete()}}getLibraryMonomerObject(){const t=this.helm.getPolymerTypeByMonomerIdx(this.monomerIdx),e=this.monomerLib.getMonomer(t,this.monomerSymbol);if(!e)throw new Error(`Monomer ${this.monomerSymbol} is not found in the library`);return e}getCapGroupElements(t){return t.rgroups.map((t=>(t.capGroupSmiles||t.capGroupSMILES).replace(/(\[|\]|\*|:|\d)/g,"")))}shiftCoordinates(t){this.molfileWrapper.shiftCoordinates(t)}getAtomLines(){return this.molfileWrapper.getAtomLines()}getBondLines(){return this.molfileWrapper.getBondLines()}removeRGroups(t){this.molfileWrapper.removeRGroups(t)}capRemainingRGroups(){this.molfileWrapper.capRGroups(this.capGroupElements)}replaceRGroupWithAttachmentAtom(t,e){this.molfileWrapper.replaceRGroupWithAttachmentAtom(t,e)}getAttachmentAtomByRGroupId(t){return this.molfileWrapper.getAttachmentAtomByRGroupId(t)}deleteBondLineWithSpecifiedRGroup(t){this.molfileWrapper.deleteBondLineWithSpecifiedRGroup(t)}shiftBonds(t){this.molfileWrapper.shiftBonds(t)}}class Ri{rdKitModule;monomerLib;constructor(t,e,n){this.rdKitModule=e,this.monomerLib=n,this.helm=new wi.f(t)}monomerWrappers=[];helm;addMonomer(t,e,n){if(t===wt.b9[gt.Hi.HELM])return;const i=this.monomerWrappers.length,o=new $i(t,i,this.helm,n,this.rdKitModule,this.monomerLib);this.monomerWrappers.push(o)}getAtomNumberShifts(){const t=[];let e=0;return this.monomerWrappers.forEach((n=>{t.push(e),e+=n.getAtomLines().length})),t}restoreBondsBetweenMonomers(){this.helm.bondData.forEach((t=>{const e=t.map((t=>t.monomerIdx)),n=t.map((t=>t.rGroupId)),i=e.map((t=>this.monomerWrappers[t])),o=i[1].getAttachmentAtomByRGroupId(n[1]);i[0].replaceRGroupWithAttachmentAtom(n[0],o),i[1].deleteBondLineWithSpecifiedRGroup(n[1])}))}compileToMolfile(){const t=[],e=[],n=this.getAtomNumberShifts();this.monomerWrappers.forEach(((t,e)=>{t.shiftBonds(n[e])})),this.restoreBondsBetweenMonomers();const i=new yi.Cg;for(const[n,o]of ot().enumerate(this.monomerWrappers)){const r=t.length,s=e.length;t.push(...n.getAtomLines()),e.push(...n.getBondLines());const a="RNA"==this.helm.getPolymerTypeByMonomerIdx(o)?Ft.o.NUCLEOTIDE:Ft.o.AA;i.set(o,{biotype:a,symbol:n.monomerSymbol,atoms:ot().count(r).take(n.atomCount).toArray(),bonds:ot().count(s).take(n.bondCount).toArray()})}const o=t.length,r=e.length;return{molfile:[this.getV3KHeader(o,r),this.getV3KAtomBlock(t),this.getV3KBondBlock(e),"M V30 END CTAB\nM END"].join("\n"),monomers:i}}getV3KHeader(t,e){return`\n Datagrok\n\n 0 0 0 0 0 0 0 0 0 0999 V3000\nM V30 BEGIN CTAB\nM V30 COUNTS ${t} ${e} 0 0 1`}getV3KAtomBlock(t){const e=/^(M V30 )(\d+)( .*)$/;return["M V30 BEGIN ATOM",...t.map(((t,n)=>{const i=n+1;return t.replace(e,((t,e,n,o)=>e+i+o))})),"M V30 END ATOM"].join("\n")}getV3KBondBlock(t){const e=/^(M V30 )(\d+)( .*)$/;return["M V30 BEGIN BOND",...t.map(((t,n)=>{const i=n+1;return t.replace(e,((t,e,n,o)=>e+i+o))})),"M V30 END BOND"].join("\n")}}class ki{constructor(t){this.molfileHandler=$e.getInstance(t)}molfileHandler;get monomerSymbols(){return this.molfileHandler.atomTypes}getMonomerShifts(t){return{x:this.molfileHandler.x[t],y:this.molfileHandler.y[t]}}}class Oi{helmHelper;rdKitModule;monomerLib;constructor(t,e,n){this.helmHelper=t,this.rdKitModule=e,this.monomerLib=n}convertToSmiles(t){const e=t.dataFrame,n=this.getSmilesList(t),i=`smiles(${t.name})`,o=e?e.columns.getUnusedName(i):i;return a.Column.fromStrings(o,n.map((t=>null===t?"":t)))}getSmilesList(t){return this.convertToMolfileV3KColumn(t).toList().map((t=>a.chem.convert(t,a.chem.Notation.MolBlock,a.chem.Notation.Smiles)))}molV3KtoMolV3KOCL(t){try{if(!t)return"";return vi.Molecule.fromMolfile(t).toMolfileV3().replace("STERAC1","STEABS")}catch(t){const[e,n]=(0,Ct.AP)(t);return to.logger.error(e,void 0,n),""}}getMolV3000ViaOCL(t,e){const n=t.map((t=>{if(null===t)return"";const e=t.get_v3Kmolblock();return t.delete(),e})),i=new Array(n.length),o=a.TaskBarProgressIndicator.create("Handling chirality...");for(let t=0;t<n.length;t++){i[t]=this.molV3KtoMolV3KOCL(n[t]);const e=t/n.length*100;o.update(e,`${e?.toFixed(2)}% of molecules completed`)}return o.close(),a.Column.fromStrings(e,i)}convertToRdKitBeautifiedMolfileColumn(t,e,n,i){const o=t.dataFrame,r=this.convertToMolfileV3KColumn(t).toList().map((t=>{if(""===t)return null;const e=n.get_mol(t);return e?(e.set_new_coords(),e.normalize_depiction(1),e.straighten_depiction(!0),e):null})),s=`molfile(${t.name})`,l=o?o.columns.getUnusedName(s):s;return e?this.getMolV3000ViaOCL(r,l):a.Column.fromStrings(l,r.map((t=>{if(null===t)return"";const e=t.get_v3Kmolblock();return t.delete(),e})))}convertToMolfileV3KColumn(t){const e=t.dataFrame,n=this.convertToMolfileV3K(t.toList()).map((t=>t.molfile)),i=(0,bi.kA)(e,`molfileV3K(${t.name})`);return a.Column.fromList("string",i,n)}convertToMolfileV3K(t){const e=new Array(t.length);for(let n=0;n<t.length;++n){const i=t[n];if(!i){e[n]=yi.vF.createEmpty();continue}let o;try{o=this.getPolymerMolfile(i)}catch(t){const[e,n]=(0,Ct.AP)(t);to.logger.error(e,void 0,n),o=yi.vF.createEmpty()}e[n]=o}return e}getPolymerGraphColumn(t){const e=t.toList(),n=this.helmHelper.getMolfiles(e);return a.Column.fromStrings("mols",n)}getPolymerMolfile(t){const e=this.helmHelper.removeGaps(t),n=e.resHelm,i=new Map;for(const[t,n]of e.monomerMap?.entries()??[])i.set(n,t);const o=this.helmHelper.getMolfiles([n])[0],r=new ki(o),s=new Ri(n,this.rdKitModule,this.monomerLib);r.monomerSymbols.forEach(((t,e)=>{const n=r.getMonomerShifts(e);s.addMonomer(t,e,n)}));const a=s.compileToMolfile(),l=new yi.Cg;for(const[t,e]of a.monomers.entries()){const n=i.get(t);l.set(n,e)}return new yi.vF(a.molfile,l)}}class Hi{seqHelper;_column;_units;_notation;_defaultGapOriginal;notationProvider;_splitter=null;constructor(t,e){if(this.seqHelper=e,t.type!==a.TYPE.STRING)throw new Error(`Unexpected column type '${t.type}', must be '${a.TYPE.STRING}'.`);this._column=t;const n=this._column.meta.units;if(!n)throw new Error("Units are not specified in column");this._units=n,this._notation=this.getNotation(),this.isCustom()&&(this.notationProvider=this.column.temp[Ut.notationProvider]??null);const i=this.isFasta()?wt.b9[gt.Hi.FASTA]:this.isSeparator()?wt.b9[gt.Hi.SEPARATOR]:this.isHelm()?wt.b9[gt.Hi.HELM]:this.isCustom()?this.notationProvider?.defaultGapOriginal??wt.b9[gt.Hi.SEPARATOR]:void 0;if(null==i)throw new Error(`Unexpected defaultGapOriginal for notation '${this.notation}'`);if(this._defaultGapOriginal=i,!this.column.tags.has(gt.gp.aligned)||!this.column.tags.has(gt.gp.alphabet)||!this.column.tags.has(gt.gp.alphabetIsMultichar)&&!this.isHelm()&&this.alphabet===gt.YI.UN)if(this.isFasta())this.seqHelper.setUnitsToFastaColumn(this);else if(this.isSeparator()){const e=t.getTag(gt.gp.separator);this.seqHelper.setUnitsToSeparatorColumn(this,e)}else if(this.isHelm())this.seqHelper.setUnitsToHelmColumn(this);else{if(!this.isCustom())throw new Error(`Unexpected units '${this.column.meta.units}'.`);this.notationProvider.setUnits(this)}if(!this.column.tags.has(gt.gp.alphabetIsMultichar))if(this.isHelm())this.column.setTag(gt.gp.alphabetIsMultichar,"true");else if(["UN"].includes(this.alphabet))throw new Error(`For column '${this.column.name}' of alphabet '${this.alphabet}' tag '${gt.gp.alphabetIsMultichar}' is mandatory.`);this.columnVersion=this.column.version,!this.isSeparator()||this.isCustom()&&this.notationProvider||t.temp.seqHandlerRefined||(this.refineSeparatorNotation(),t.temp.seqHandlerRefined=!0)}async refineSeparatorNotation(){const t=((t,e,n)=>{const i={};let o=!0,r=null;for(const e of t){const t=e?n(e):[];if(null===r?r=t.length:t.length!==r&&(o=!1),t.length>=3)for(const e of t)e in i||(i[e]=0),i[e]+=1}return{freq:i,sameLength:o}})([...new Set((this.column.length<100?ot().count(0).take(Math.min(100,this.column.length)).map((t=>this.column.get(t))):this.column.categories.slice(0,100)).map((t=>t?t.substring(0,500):"")).filter((t=>0!==t.length)))],0,(t=>t.split(this.separator)));let e=!1;const n=[{package:"SequenceTranslator",name:"refineNotationProviderForHarmonizedSequence"}];for(const i of n)try{const n=a.Func.find(i);if(0===n.length)continue;const o=n[0].prepare({col:this.column,stats:t,separator:this.separator}),r=(await o.call()).getOutputParamValue();e||=r}catch(t){console.error(t)}e&&(delete this.column.temp[Ut.seqHandler],this.column.fireValuesChanged())}static setTags(t){const e=t.column.meta.units;if([gt.Hi.FASTA,gt.Hi.SEPARATOR].includes(e)){if(!t.column.getTag(gt.gp.alphabet)&&0===Object.keys(t.stats.freq).length)throw new Error("Alphabet is empty and not annotated.");let e=t.column.getTag(gt.gp.aligned);null===e&&(e=t.stats.sameLength?"SEQ.MSA":"SEQ",t.column.setTag(gt.gp.aligned,e));let n=t.column.getTag(gt.gp.alphabet);if(null===n&&(n=(0,Ot.pc)(t.stats.freq,gt.q7),t.column.setTag(gt.gp.alphabet,n)),n===gt.YI.UN){const e=Object.keys(t.stats.freq).length,n=Object.keys(t.stats.freq).some((t=>t.length>1));t.column.setTag(gt.gp.alphabetSize,e.toString()),t.column.setTag(gt.gp.alphabetIsMultichar,n?"true":"false")}}else if(e===gt.Hi.HELM){let e=t.column.getTag(gt.gp.alphabet);null===e&&(e=(0,Ot.p0)(t.stats.freq,gt.q7,t.defaultGapOriginal),t.column.setTag(gt.gp.alphabet,e))}}get column(){return this._column}get length(){return this._column.length}get units(){return this._units}get notation(){return this._notation}get defaultGapOriginal(){return this._defaultGapOriginal}get separator(){const t=this.column.getTag(gt.gp.separator)??void 0;if(this.notation===gt.Hi.SEPARATOR&&void 0===t)throw new Error(`Separator is mandatory for column '${this.column.name}' of notation '${this.notation}'.`);return t}get aligned(){const t=this.column.getTag(gt.gp.aligned);if(!t&&(this.isFasta()||this.isSeparator()))throw new Error("Tag aligned not set");return t}get alphabet(){const t=this.column.getTag(gt.gp.alphabet);if(!t&&(this.isFasta()||this.isSeparator()))throw new Error("Tag alphabet not set");return t}get defaultBiotype(){return this.alphabet===gt.YI.RNA||this.alphabet===gt.YI.DNA?Ft.o.NUCLEOTIDE:Ft.o.AA}get helmCompatible(){return this.column.getTag(gt.gp.isHelmCompatible)}getAlphabetSize(){if(this.notation==gt.Hi.HELM||this.alphabet==gt.YI.UN){const t=this.column.getTag(gt.gp.alphabetSize);let e;if(t)e=parseInt(t);else{const t=this.stats;e=Object.keys(t.freq).length}return e}switch(this.alphabet){case gt.YI.PT:return 20;case gt.YI.DNA:case gt.YI.RNA:return 4;case"NT":return console.warn("Unexpected alphabet 'NT'."),4;default:throw new Error(`Unexpected alphabet '${this.alphabet}'.`)}}getAlphabetIsMultichar(){return this.notation===gt.Hi.HELM||this.alphabet===gt.YI.UN&&"true"===this.column.getTag(gt.gp.alphabetIsMultichar)}cached=!0;_splitted=null;columnVersion=null;getSplitted(t,e){if(this.cached&&void 0===e){this.column.version===this.columnVersion&&null!==this._splitted||(this.columnVersion=this.column.version,this._splitted=new Array(this.column.length));let e=this._splitted[t]?this._splitted[t].deref():void 0;if(!e){const n=this.column.get(t);e=this.splitter(n),this._splitted[t]=new WeakRef(e)}return e}{const n=this.column.get(t);return this.getSplitter(e)(n)}}getMonomerAtPosition(t,e,n){if(this.isCanonicalAlphabet&&this.isFasta()&&!this.getAlphabetIsMultichar()){const i=(this.column.get(t)??"")[e];return n?i===wt.b9[gt.Hi.FASTA]?wt._S:i??wt._S:i??""}const i=this.getSplitted(t);return e<0||e>=i.length?this.defaultGapOriginal:n?i.getCanonical(e):i.getOriginal(e)}getMonomersAtPosition(t,e){const n=this.column.length,i=new Array(n).fill(wt._S);if(this.isCanonicalAlphabet&&this.isFasta()&&!this.getAlphabetIsMultichar()){const o=this.column.categories,r=this.column.getRawData();for(let s=0;s<n;s++){const n=o[r[s]]??"";if(t<n.length){const o=n[t];i[s]=e?o===wt.b9[gt.Hi.FASTA]?wt._S:o??wt._S:o??""}}}else for(let o=0;o<n;o++){const n=this.getSplitted(o);t>=0&&t<n.length&&(i[o]=e?n.getCanonical(t):n.getOriginal(t))}return i}getValue(t,e){return this.column.get(t),new jt(t,this)}getHelm(t){let e;const n=this.column.get(t);return e=this.notation===gt.Hi.HELM?n:this.notation===gt.Hi.CUSTOM?this.notationProvider.getHelm(n,{}):this.getConverter(gt.Hi.HELM)(n),e}_stats=null;get isCanonicalAlphabet(){const t=this.alphabet;return t===gt.YI.DNA||t===gt.YI.RNA||t===gt.YI.PT}get stats(){if(null===this._stats){const t={};let e=!0,n=null;const i=this.column.length;for(let o=0;o<i;++o){const i=this.getSplitted(o);null==n?n=i.length:i.length!==n&&(e=!1);for(let e=0;e<i.length;++e){const n=i.getCanonical(e);n in t||(t[n]=0),t[n]+=1}}this._stats={freq:t,sameLength:e}}return this._stats}_maxLength=null;get maxLength(){return null===this._maxLength&&(this._maxLength=0===this.column.length?0:ot().count(0).take(this.column.length).map((t=>this.getSplitted(t).length)).reduce(((t,e)=>t>e?t:e),0)),this._maxLength}_posList=null;get posList(){if(null===this._posList){const t=this.column.getTag(gt.gp.positionNames);this._posList=t?t.split(gt.z1).map((t=>t.trim())):ot().count(1).take(this.maxLength).map((t=>t.toString())).toArray()}return this._posList}isFasta(){return this.notation===gt.Hi.FASTA}isSeparator(){return this.notation===gt.Hi.SEPARATOR||!!this.separator}isFastaOrSeparator(){return this.isFasta()||this.isSeparator()}isHelm(){return this.notation===gt.Hi.HELM}isCustom(){return this.notation===gt.Hi.CUSTOM}isRna(){return this.alphabet===gt.YI.RNA}isDna(){return this.alphabet===gt.YI.DNA}isPeptide(){return this.alphabet===gt.YI.PT}isMsa(){return!!this.aligned&&this.aligned.toUpperCase().includes("MSA")}isHelmCompatible(){return"true"===this.helmCompatible}isGap(t){return!t||t===this._defaultGapOriginal}getNotation(){if(this.units.toLowerCase().startsWith(gt.Hi.FASTA))return gt.Hi.FASTA;if(this.units.toLowerCase().startsWith(gt.Hi.SEPARATOR))return gt.Hi.SEPARATOR;if(this.units.toLowerCase().startsWith(gt.Hi.HELM))return gt.Hi.HELM;if(this.units.toLowerCase().startsWith(gt.Hi.CUSTOM))return gt.Hi.CUSTOM;throw new Error(`Column '${this.column.name}' has unexpected notation '${this.units}'.`)}getHelmWrappers(){return[this.isDna()||this.isRna()||this.isHelmCompatible()?"RNA1{":"PEPTIDE1{",this.isDna()?"d(":this.isRna()?"r(":"",this.isDna()||this.isRna()?")p":"","}$$$$"]}getNewColumn(t,e,n,i){const o=this.column,r=t.toLowerCase()+"("+o.name+")",s=n??o.dataFrame?.columns.getUnusedName(r)??r,l=a.Column.fromList("string",s,i??new Array(this.column.length).fill(""));if(l.semType=a.SEMTYPE.MACROMOLECULE,l.meta.units=t,t===gt.Hi.SEPARATOR){if(!e)throw new Error(`Notation '${gt.Hi.SEPARATOR}' requires separator value.`);l.setTag(gt.gp.separator,e)}l.setTag(a.TAGS.CELL_RENDERER,t===gt.Hi.HELM?"helm":"sequence");const c=o.getTag(gt.gp.aligned);c&&l.setTag(gt.gp.aligned,c);let h=o.getTag(gt.gp.alphabet);h||this.notation!==gt.Hi.HELM||t===gt.Hi.HELM||(h=gt.YI.UN),null!=h&&l.setTag(gt.gp.alphabet,h);let u=o.getTag(gt.gp.alphabetSize);null!=h&&u&&l.setTag(gt.gp.alphabetSize,u);const d=o.getTag(gt.gp.alphabetIsMultichar);return null!=h&&void 0!==d&&l.setTag(gt.gp.alphabetIsMultichar,d),t==gt.Hi.HELM&&(u=this.getAlphabetSize().toString(),l.setTag(gt.gp.alphabetSize,u)),l}getNewColumnFromList(t,e){return this.getNewColumn(this.notation,this.separator,t,e)}static unitsStringIsValid(t){return t=t.toLowerCase(),[gt.Hi.FASTA,gt.Hi.SEPARATOR,gt.Hi.HELM].some((e=>t.startsWith(e.toLowerCase())))}static getNewColumnFromParams(t,e,n){if(!Hi.unitsStringIsValid(n))throw new Error("Invalid format of 'units' parameter");const i=a.Column.fromList("string",e,new Array(t).fill(""));return i.semType=a.SEMTYPE.MACROMOLECULE,i.meta.units=n,i}get splitter(){return null===this._splitter&&(this._splitter=this.getSplitter()),this._splitter}getSplitter(t){let e=null;if(e=this.notationProvider?this.notationProvider.splitter:null,e)return e;if(this.units.toLowerCase().startsWith(gt.Hi.FASTA))return null===this.column.getTag(gt.gp.alphabet)||this.getAlphabetIsMultichar()?gt.J9:Ot.tm;if(this.units.toLowerCase().startsWith(gt.Hi.SEPARATOR))return(0,gt.dh)(this.separator,t);if(this.units.toLowerCase().startsWith(gt.Hi.HELM))return gt.qp;throw new Error(`Unexpected units ${this.units} .`)}split(t){return this.splitter(t)}getDistanceFunctionName(){if(!this.isFasta())throw new Error("Only FASTA notation is supported");if(this.isMsa())return ue.Z.HAMMING;switch(this.alphabet){case gt.YI.DNA:case gt.YI.RNA:case gt.YI.PT:}return ue.Z.LEVENSHTEIN}getDistanceFunction(){return ue.V[this.getDistanceFunctionName()]()}async checkHelmCompatibility(){if(this.column.tags.has(gt.gp.isHelmCompatible))return"true"===this.column.getTag(gt.gp.isHelmCompatible);const t=(await(0,bt.pj)()).getMonomerLib().getMonomerSymbolsByType("PEPTIDE"),e=new Set(t),n=((0,gt.dh)(this.separator),new Set),i=this.column.length,o=this.column.getRawData();for(let t=0;t<i;++t){const i=o[t];if(!(i in n)){n.add(i);const o=this.getSplitted(t);for(let t=0;t<o.length;++t){const n=o.getCanonical(t);if(!e.has(n))return this.column.setTag(gt.gp.isHelmCompatible,"false"),!1}}}return this.column.setTag(gt.gp.isHelmCompatible,"true"),!0}toFasta(t){return t===gt.Hi.FASTA}toSeparator(t){return t===gt.Hi.SEPARATOR}toHelm(t){return t===gt.Hi.HELM}convertHelmToFastaSeparator(t,e,n,i){i||(i=this.toFasta(e)?wt.b9[gt.Hi.FASTA]:wt.b9[gt.Hi.SEPARATOR]),n||(n=this.toFasta(e)?"":this.separator);const o=t.startsWith("RNA"),r=(0,gt.qp)(t),s=[];for(let t=0;t<r.length;++t){let n=r.getOriginal(t);if(o&&(n=n.replace(yn.EK,"$1")),n===wt.b9[gt.Hi.HELM])s.push(i);else if(this.toFasta(e)&&n.length>1){const t="["+n+"]";s.push(t)}else s.push(n)}return s.join(n)}convert(t,e){const n=this.getJoiner({notation:t,separator:e}),i=this.getNewColumn(t,e);return i.init((t=>{const e=this.getSplitted(t);return n(e)})),i}getRegion(t,e,n){const i=this.getNewColumn(this.notation,this.separator);i.name=n;const o=t??0,r=e??this.maxLength-1,s=this.getJoiner(),a=r-o+1,l=wt.b9[this.notation];i.init((t=>{const e=this.getSplitted(t),n=new Array(a);for(let t=0;t<a;++t){const i=o+t;n[t]=i<e.length?e.getOriginal(i):l}return s(new Ot.Mu(n,l))}));const c=t=>{const e=t.split(",").map((t=>t.trim())),n=new Array(a);for(let t=0;t<a;++t){const i=o+t;n[t]=i<e.length?e[i]:"?"}return n.join(gt.z1)},h=this.column.getTag(gt.gp.positionNames);h&&i.setTag(gt.gp.positionNames,c(h));const u=this.column.getTag(gt.gp.positionLabels);return u&&i.setTag(gt.gp.positionLabels,c(u)),i}_joiner=void 0;get joiner(){return this._joiner||(this._joiner=this.getJoiner()),this._joiner}getJoiner(t){const e=t?t.notation:this.notation,n=t?t.separator:this.separator;let i;const o=this;switch(e){case gt.Hi.FASTA:i=function(t){return o.joinToFasta(t,o.isHelm())};break;case gt.Hi.SEPARATOR:if(!n)throw new Error(`Separator is mandatory for notation '${e}'.`);i=function(t){return Gi(t,n,o.isHelm())};break;case gt.Hi.HELM:{const t=o.alphabet===gt.YI.DNA||o.alphabet===gt.YI.RNA,e=o.getHelmWrappers();i=function(n){return Fi(n,e,t)};break}default:throw new Error(`Unexpected notation '${e}'.`)}return i}getConverter(t,e=void 0){if(t===gt.Hi.SEPARATOR&&!e)throw new Error(`Target separator is not specified for target units '${gt.Hi.SEPARATOR}'.`);const n=this;if(t===gt.Hi.FASTA)return function(t){return n.convertToFasta(t)};if(t===gt.Hi.HELM)return function(t){return n.convertToHelm(t)};if(t===gt.Hi.SEPARATOR)return function(t){return n.convertToSeparator(t,e)};throw new Error}static forColumn(t,e){let n=t.temp[Ut.seqHandler];return n&&n.columnVersion===t.version||(n=t.temp[Ut.seqHandler]=new Hi(t,e)),n}joinToFasta(t,e){const n=new Array(t.length);for(let i=0;i<t.length;++i){const o=t.getOriginal(i);let r=t.getOriginal(i);e&&(r=r.replace(yn.EK,"$1")),o===wt._S?r=wt.b9[gt.Hi.FASTA]:o===yn.q7?r="":r.length>1&&(r="["+r+"]"),n[i]=r}return n.join("")}convertToFasta(t){const e=this.splitter,n=this.isHelm()?this.splitterAsHelmNucl(t):e(t);return this.joinToFasta(n,this.isHelm())}convertToSeparator(t,e){return Gi(this.isHelm()?this.splitterAsHelmNucl(t):this.splitter(t),e,this.isHelm())}convertToHelm(t){if(this.notation==gt.Hi.HELM)return t;const e=this.getHelmWrappers(),n=t.startsWith("DNA")||t.startsWith("RNA");return Fi(this.splitter(t),e,n)}splitterAsHelmNucl(t){const e=this.splitter(t),n=new Array(e.length),i=t.startsWith("DNA"),o=t.startsWith("RNA");for(let t=0;t<e.length;++t){let r=e.getOriginal(t);(i||o)&&(r=r.replace(yn.EK,"$1"),r=r===yn.q7?null:r),n[t]=r||null}return new Ot.Mu(n.filter((t=>!!t)),wt.b9[gt.Hi.HELM])}getRendererBack(t,e){const n=this.column.temp;let i=n.rendererBack;return i||(i=n.rendererBack=this.notationProvider.createCellRendererBack(t,e)),i}}function Gi(t,e,n){const i=new Array(t.length);for(let e=0;e<t.length;++e){const o=t.getCanonical(e);let r=t.getOriginal(e);n&&(r=r.replace(yn.EK,"$1")),o===wt._S?r=wt.b9[gt.Hi.SEPARATOR]:o===yn.q7&&(r=""),i[e]=r}return i.join(e)}function Fi(t,e,n){const[i,o,r,s]=e,a=new Array(t.length);for(let e=0;e<t.length;++e){const i=t.getCanonical(e);let s=t.getOriginal(e);i===wt._S?s=wt.b9[gt.Hi.HELM]:(n&&(s=s.replace(yn.EK,"$1")),s=1===s.length?`${o}${s}${r}`:`${o}[${s}]${r}`),a[e]=s}return`${i}${a.join(".")}${s}`}class Di{libHelper;rdKitModule;constructor(t,e){this.libHelper=t,this.rdKitModule=e}getSeqHandler(t){return Hi.forColumn(t,this)}getSeqMonomers(t){const e=this.getSeqHandler(t);return Object.keys(e.stats.freq)}async getHelmToMolfileConverter(t){const e=await(0,ke.b2)();return new Oi(e,this.rdKitModule,t)}helmToAtomicLevelSingle(t,e,n,i=!0){if(!t)return yi.vF.createEmpty();const o=e.convertToMolfileV3K([t])[0];if(!o||!o.molfile)return yi.vF.createEmpty();let r=null;try{let t=o.molfile;if(i){if(r=this.rdKitModule.get_mol(t),!r)return yi.vF.createEmpty();r.set_new_coords(),r.normalize_depiction(1),r.straighten_depiction(!0),t=r.get_v3Kmolblock()}return n&&(t=e.molV3KtoMolV3KOCL(t)),new yi.vF(t,o.monomers)}catch(t){const[e,n]=(0,Ct.AP)(t);return to.logger.error(e,void 0,n),yi.vF.createEmpty()}finally{r?.delete()}}async helmToAtomicLevel(t,e,n,i){const o=i??this.libHelper.getMonomerLib(),s=t.dataFrame,l=(0,bi.qj)(s,t.name),c=await this.getHelmToMolfileConverter(o),h=t.toList(),u=new Array(t.length),d=a.Func.find({package:"Chem",name:"beautifyMols"})[0],p=a.Func.find({package:"Chem",name:"convertToV3KViaOCL"})[0];for(let n=0;n<t.length;n++)u[n]=this.helmToAtomicLevelSingle(h[n],c,e&&!p,!d).molfile;if(d){const e=await d.apply({mols:u});if(e&&Array.isArray(e)&&e.length===t.length)for(let n=0;n<t.length;n++)e[n]&&(u[n]=e[n])}if(e&&p){const e=await p.apply({mols:u});if(e&&Array.isArray(e)&&e.length===t.length)for(let n=0;n<t.length;n++)e[n]&&(u[n]=e[n]);else r.shell.warning("OCL function returned an unexpected result")}const m=a.Column.fromStrings(l,u);return m.semType=a.SEMTYPE.MOLECULE,m.meta.units=a.UNITS.Molecule.MOLBLOCK,m.setTag(".sequence-src-col",t.name),{molCol:m,warnings:[]}}setUnitsToFastaColumn(t){if(t.column.semType!==a.SEMTYPE.MACROMOLECULE||t.column.meta.units!==gt.Hi.FASTA)throw new Error(`The column of notation '${gt.Hi.FASTA}' must be '${a.SEMTYPE.MACROMOLECULE}'.`);t.column.meta.units=gt.Hi.FASTA,Hi.setTags(t)}setUnitsToSeparatorColumn(t,e){if(t.column.semType!==a.SEMTYPE.MACROMOLECULE||t.column.meta.units!==gt.Hi.SEPARATOR)throw new Error(`The column of notation '${gt.Hi.SEPARATOR}' must be '${a.SEMTYPE.MACROMOLECULE}'.`);if(!e)throw new Error(`The column of notation '${gt.Hi.SEPARATOR}' must have the separator tag.`);t.column.meta.units=gt.Hi.SEPARATOR,t.column.setTag(gt.gp.separator,e),Hi.setTags(t)}setUnitsToHelmColumn(t){if(t.column.semType!==a.SEMTYPE.MACROMOLECULE)throw new Error(`The column of notation '${gt.Hi.HELM}' must be '${a.SEMTYPE.MACROMOLECULE}'`);t.column.meta.units=gt.Hi.HELM,Hi.setTags(t)}}const Bi="#333333",Vi="rgba(60, 177, 115, 0.1)",Wi="rgba(240, 240, 240, 0.5)",Ui="rgba(100, 100, 100, 0.3)";class ji{constructor(t=Yi.DEFAULT_TRACK_HEIGHT,e=Yi.MIN_TRACK_HEIGHT,n=""){this.ctx=null,this.visible=!0,this.title="",this.tooltipEnabled=!1,this.tooltipContent=null,this.height=t,this.defaultHeight=t,this.minHeight=e,this.title=n}init(t){this.ctx=t}getMonomerAt(t,e,n){return null}enableTooltip(t){this.tooltipEnabled=t}setTooltipContentGenerator(t){this.tooltipContent=t}getTooltipContent(t,e){if(!this.tooltipEnabled||!this.tooltipContent)return null;const n=this.getPositionData(t)??new Map;return this.tooltipContent(t,e,n)}getPositionData(t){return null}setVisible(t){this.visible=t}getHeight(){return this.visible?this.height:0}getDefaultHeight(){return this.defaultHeight}getMinHeight(){return this.minHeight}setHeight(t){this.height=Math.max(this.minHeight,t)}resetHeight(){this.height=this.defaultHeight}isVisible(){return this.visible}setTitle(t){this.title=t}getTitle(){return this.title}}class qi extends ji{constructor(t=new Map,e=Yi.DEFAULT_TRACK_HEIGHT,n="",i="WebLogo"){super(e,Yi.DEFAULT_TRACK_HEIGHT,i),this.data=new Map,this.monomerLib=null,this.biotype="HELM_AA",this.hoveredPosition=-1,this.hoveredMonomer=null,this.data=t,this.visible=t.size>0}setHovered(t,e){this.hoveredPosition=t,this.hoveredMonomer=e}getPositionData(t){return this.data.get(t)||null}setupDefaultTooltip(){this.enableTooltip(!0),this.setTooltipContentGenerator(((t,e,n)=>this.createTooltipContent(t,e,n)))}createFrequencyTable(t){let e;switch(this.biotype){case"HELM_BASE":case"HELM_SUGAR":case"HELM_NUCLETIDE":e=Ft.o.NUCLEOTIDE;break;default:e=Ft.o.AA}const n=Array.from(t.values()).reduce(((t,e)=>t+e),0),i={};for(const[e,o]of t.entries())i[e]=Math.max(1,Math.round(o/n*100));const o=(0,ci.F)(i,e,this.monomerLib);return o.style.fontSize="11px",o.style.marginTop="4px",o}createTooltipContent(t,e,n){const i=[];if(i.push(s.divText(`Position: ${t+1}`,{style:{fontWeight:"bold",marginBottom:"6px",fontSize:"13px"}})),e&&(i.push(s.divText(`Monomer: ${e}`,{style:{marginBottom:"6px",fontSize:"13px"}})),n.has(e)&&i.push(s.divText(`${(100*n.get(e)).toFixed(2)}%`,{style:{marginBottom:"6px",fontSize:"13px"}}))),n&&n.size>0){const t=this.createFrequencyTable(n);i.push(t)}else i.push(s.divText("No data available",{style:{fontStyle:"italic",color:"#666"}}));const o=s.divV(i);return o.style.maxHeight="80vh",o}setMonomerLib(t){this.monomerLib=t}setBiotype(t){this.biotype=t}getMonomerAt(t,e,n){if(!this.ctx||!this.visible||0===this.data.size)return null;const i=this.data.get(n);if(!i||0===i.size)return null;const o=e,r=Array.from(i.entries()).sort(((t,e)=>e[1]-t[1])),s=r.reduce(((t,[e,n])=>t+n),0),a=this.height;let l=0;for(const[t,e]of r){const n=e*a/s;if(o>=l&&o<l+n)return t;l+=n}return null}updateData(t){this.data=t,this.visible=t.size>0}draw(t,e,n,i,o,r,s,a){if(!this.ctx||!this.visible||0===this.data.size)return;const l=Math.floor(n/r),c=i-4,h=e+2;for(let u=0;u<l;u++)this.drawWebLogoColumn(u,t,e,n,i,o,r,s,a,h,c)}drawWebLogoColumn(t,e,n,i,o,r,s,a,l,c,h){const u=r+t-1;if(u<0||u>=a)return;const d=this.data.get(u);if(!d||0===d.size)return;const p=e+t*s,m=s-2;r+t===l&&(this.ctx.fillStyle=Vi,this.ctx.fillRect(p,n,s,o)),this.ctx.fillStyle=Wi,this.ctx.fillRect(p+1,c,m,h),this.drawLettersInColumn(u,p,m,c,h,d),this.drawColumnBorder(p,c,m,h)}drawLettersInColumn(t,e,n,i,o,r){const s=Array.from(r.entries()).sort(((t,e)=>e[1]-t[1])),a=s.reduce(((t,[e,n])=>t+n),0),l=Math.min(1,o/(a*o));let c=i;const h=i+o;for(const[i,r]of s){const s=r*o*l,a=Math.max(4,Math.floor(s));if(a<4)continue;const u=t===this.hoveredPosition&&i===this.hoveredMonomer,d=Math.min(a,h-c);if(d<4)break;this.drawLetter(i,e+1,c,n,d,u),c+=d}}drawColumnBorder(t,e,n,i){this.ctx.strokeStyle=Ui,this.ctx.lineWidth=1,this.ctx.strokeRect(t+1,e,n,i)}drawLetter(t,e,n,i,o,r=!1){if(!this.ctx)return;const s=this.getMonomerBackgroundColor(t),a=this.getMonomerTextColor(t);this.ctx.fillStyle=s,this.ctx.fillRect(e,n,i,o),r&&(this.ctx.shadowColor="rgba(255, 255, 255, 0.8)",this.ctx.shadowBlur=8,this.ctx.strokeStyle="white",this.ctx.lineWidth=2,this.ctx.strokeRect(e,n,i,o),this.ctx.shadowBlur=0),this.drawLetterSeparators(e,n,i,o),this.drawLetterText(t,e,n,i,o,a)}drawLetterSeparators(t,e,n,i){this.ctx.strokeStyle="rgba(255, 255, 255, 0.4)",this.ctx.lineWidth=1,e+i<e+this.ctx.canvas.height&&(this.ctx.beginPath(),this.ctx.moveTo(t,e+i),this.ctx.lineTo(t+n,e+i),this.ctx.stroke())}drawLetterText(t,e,n,i,o,r){const s=Math.min(.8*o,.8*i);s>=7&&(this.ctx.fillStyle=r,this.ctx.font=`bold ${s}px Roboto, Roboto Local`,this.ctx.textAlign="center",this.ctx.textBaseline="middle",this.ctx.fillText(t,e+i/2,n+o/2))}getMonomerBackgroundColor(t){if(this.monomerLib)try{const e=this.monomerLib.getMonomerColors(this.biotype,t);if(e&&e.backgroundcolor)return e.backgroundcolor}catch(t){console.warn("Error getting background color from monomerLib:",t)}return"#CCCCCC"}getMonomerTextColor(t){const e=this.getMonomerBackgroundColor(t);try{const t=a.Color.fromHtml(e),n=a.Color.getContrastColor(t);return a.Color.toHtml(n)}catch(t){return console.warn("Error calculating contrast color:",t),"#000000"}}}class zi extends ji{constructor(t,e=Yi.DEFAULT_TRACK_HEIGHT,n="default",i="Conservation"){super(e,Yi.MIN_TRACK_HEIGHT,i),this.data=t,this.colorScheme=n,this.visible=t.length>0}updateData(t){this.data=t,this.visible=t.length>0}draw(t,e,n,i,o,r,s,a){if(!this.ctx||!this.visible||0===this.data.length)return;const l=Math.floor(n/r);for(let n=0;n<l;n++){const l=o+n;if(l>s)break;const c=t+n*r,h=r,u=c+h/2;l-1<this.data.length&&(this.drawConservationBar(l-1,c,h,u,e,i),l===a&&(this.ctx.fillStyle=Vi,this.ctx.fillRect(c,e,h,i)))}}drawConservationBar(t,e,n,i,o,r){if(!this.ctx)return;const s=this.data[t];this.ctx.fillStyle=Wi,this.ctx.fillRect(e+2,o,n-4,r);let a="#3CB173";if("default"===this.colorScheme)s<.5?a="#E74C3C":s<.75&&(a="#F39C12");else if("rainbow"===this.colorScheme)a=s<.2?"#E74C3C":s<.4?"#FF7F00":s<.6?"#FFFF00":s<.8?"#00FF00":"#0000FF";else if("heatmap"===this.colorScheme){const t=Math.round(255*s);a=`rgb(255, ${t}, ${t})`}const l=s*r;this.ctx.fillStyle=a,this.ctx.fillRect(e+2,o+r-l,n-4,l),this.ctx.strokeStyle=Ui,this.ctx.lineWidth=1,this.ctx.strokeRect(e+2,o,n-4,r),n>20&&(this.ctx.fillStyle=Bi,this.ctx.font="9px monospace",this.ctx.textAlign="center",this.ctx.textBaseline="middle",this.ctx.fillText(`${Math.round(100*s)}%`,i,o+r/2))}}const Yi={TITLE_HEIGHT:16,TRACK_GAP:4,DOTTED_CELL_HEIGHT:30,SLIDER_HEIGHT:8,TOP_PADDING:5,DEFAULT_TRACK_HEIGHT:45,MIN_TRACK_HEIGHT:35},Ki={BASE:Yi.DOTTED_CELL_HEIGHT+Yi.SLIDER_HEIGHT,WITH_TITLE:function(){return this.BASE+Yi.TITLE_HEIGHT+Yi.TRACK_GAP},WITH_WEBLOGO:function(){return this.WITH_TITLE()+Yi.DEFAULT_TRACK_HEIGHT+Yi.TRACK_GAP},WITH_BOTH:function(){return this.WITH_WEBLOGO()+Yi.DEFAULT_TRACK_HEIGHT+Yi.TRACK_GAP}};class Zi{constructor(t){this.canvas=null,this.ctx=null,this.tracks=new Map,this.currentHoverPosition=-1,this.currentHoverTrack=null,this.currentHoverMonomer=null,this.previousHoverPosition=-1,this.previousHoverTrack=null,this.previousHoverMonomer=null,this.dataFrame=null,this.seqHandler=null,this.seqColumn=null,this.onSelectionCallback=null,this.trackButtons=[],this.userSelectedTracks=null,this.config={x:t.x||0,y:t.y||0,width:t.width||0,height:t.height||0,windowStartPosition:t.windowStartPosition||1,positionWidth:t.positionWidth||15,totalPositions:t.totalPositions||5e3,headerHeight:t.headerHeight||Ki.BASE,sliderHeight:t.sliderHeight||Yi.SLIDER_HEIGHT,currentPosition:t.currentPosition||1,cellBackground:void 0===t.cellBackground||t.cellBackground,sliderColor:t.sliderColor||"rgba(220, 220, 220, 0.4)",onPositionChange:t.onPositionChange||((t,e)=>{}),onHeaderHeightChange:t.onHeaderHeightChange||(()=>{}),...t},this.eventElement=s.div(),this.eventElement.style.position="absolute",this.config.canvas.parentElement?.appendChild(this.eventElement),this.state={isDragging:!1,dragStartX:0},this.setupEventListeners(),this.init()}determineVisibleTracks(){const t=this.config.headerHeight,e=this.getTrack("weblogo"),n=this.getTrack("conservation");if(this.tracks.forEach((t=>{t.setVisible(!1),t.setHeight(Yi.DEFAULT_TRACK_HEIGHT)})),!(t<Ki.WITH_TITLE()||t<Ki.WITH_WEBLOGO()))if(t<Ki.WITH_BOTH()){if(e){e.setVisible(!0);const n=t-Ki.WITH_WEBLOGO();e.setHeight(Yi.DEFAULT_TRACK_HEIGHT+n)}}else{if(e&&e.setVisible(!0),n&&n.setVisible(!0),e&&t>Ki.WITH_BOTH()){const n=t-Ki.WITH_BOTH();e.setHeight(Yi.DEFAULT_TRACK_HEIGHT+n)}this.userSelectedTracks&&(this.tracks.forEach(((t,e)=>{this.userSelectedTracks[e]||t.setVisible(!1)})),t<Ki.WITH_WEBLOGO()&&e&&e.setVisible(!1),t<Ki.WITH_BOTH()&&n&&n.setVisible(!1))}}drawTrackButtons(){if(!this.ctx||this.config.width<280)return;this.trackButtons=[];const t=this.getTrack("conservation"),e=this.getTrack("weblogo"),n=t?.isVisible()??!1,i=e?.isVisible()??!1;let o=this.config.width-16;const r=this.config.headerHeight>=Ki.WITH_TITLE()?(Yi.TITLE_HEIGHT-14)/2:2;n&&i||(!n&&t&&(o-=70,this.drawTrackButton("conservation","Conservation",o,r,70,14),o-=4),!i&&e&&(o-=70,this.drawTrackButton("weblogo","WebLogo",o,r,70,14)))}drawTrackButton(t,e,n,i,o,r,s=!1){this.ctx&&(this.trackButtons.push({id:t,label:e,x:n,y:i,width:o,height:r}),this.ctx.fillStyle=s?"rgba(100, 150, 200, 0.8)":"rgba(240, 240, 240, 0.8)",this.ctx.fillRect(n,i,o,r),this.ctx.strokeStyle=s?"rgba(70, 120, 170, 0.8)":"rgba(180, 180, 180, 0.8)",this.ctx.lineWidth=1,this.ctx.strokeRect(n,i,o,r),this.ctx.fillStyle=s?"#ffffff":"#666666",this.ctx.font="9px Roboto, Roboto Local",this.ctx.textAlign="center",this.ctx.textBaseline="middle",this.ctx.fillText(e,n+o/2,i+r/2))}handleTrackButtonClick(t,e){for(const n of this.trackButtons)if(t>=n.x&&t<=n.x+n.width&&e>=n.y&&e<=n.y+n.height)return this.snapToTrackHeight(n.id),!0;return!1}snapToTrackHeight(t){let e;if("weblogo"===t)e=Ki.WITH_WEBLOGO();else{if("conservation"!==t)return;e=Ki.WITH_BOTH()}this.userSelectedTracks||(this.userSelectedTracks={},this.tracks.forEach(((t,e)=>{this.userSelectedTracks[e]=!1}))),"conservation"===t?(this.userSelectedTracks.weblogo=!0,this.userSelectedTracks.conservation=!0):"weblogo"===t&&(this.userSelectedTracks.weblogo=!0),this.config.onHeaderHeightChange&&this.config.onHeaderHeightChange(e),window.requestAnimationFrame((()=>this.redraw()))}resetToAutoMode(){this.userSelectedTracks=null;const t=this.tracks.size>0?Ki.WITH_BOTH():Ki.BASE;this.config.onHeaderHeightChange&&this.config.onHeaderHeightChange(t),window.requestAnimationFrame((()=>this.redraw()))}drawColumnTitle(t,e,n,i){this.ctx&&i&&this.config.headerHeight>=Ki.WITH_TITLE()&&(this.ctx.fillStyle="rgba(255, 255, 255, 0.95)",this.ctx.fillRect(t,e,n,Yi.TITLE_HEIGHT),this.ctx.fillStyle=Bi,this.ctx.font="bold 13px Roboto, Roboto Local",this.ctx.textAlign="center",this.ctx.textBaseline="middle",this.ctx.fillText(i,t+n/2,e+Yi.TITLE_HEIGHT/2))}clearHoverStates(){(-1!==this.previousHoverPosition||null!==this.previousHoverTrack||null!==this.previousHoverMonomer)&&(this.previousHoverPosition=-1,this.previousHoverTrack=null,this.previousHoverMonomer=null,this.tracks.forEach((t=>{t instanceof qi&&t.setHovered(-1,null)})),window.requestAnimationFrame((()=>this.redraw())))}redraw(){this.draw(this.config.x,this.config.y,this.config.width,this.config.height,this.config.currentPosition,this.config.windowStartPosition,{preventDefault:()=>{}},this.seqColumn?.name)}setSelectionData(t,e,n,i){this.dataFrame=t,this.seqColumn=e,this.seqHandler=n,this.onSelectionCallback=i||null}setupTooltipHandling(){this.eventElement.addEventListener("mousemove",this.handleTooltipMouseMove.bind(this)),this.eventElement.addEventListener("mouseleave",this.handleTooltipMouseLeave.bind(this))}handleTooltipMouseMove(t){if(!this.isValid)return;const{x:e,y:n}=this.getCoords(t),i=this.config.positionWidth,o=Math.floor(e/i),r=this.config.windowStartPosition+o-1;if(r<0||r>=this.config.totalPositions)return this.hideTooltip(),void this.clearHoverStates();const a=this.config.headerHeight>=Ki.WITH_TITLE()?Yi.TITLE_HEIGHT:0,l=this.config.headerHeight-Yi.SLIDER_HEIGHT-Yi.DOTTED_CELL_HEIGHT,c=l-Yi.TRACK_GAP;if(n>=l||n<a)return this.hideTooltip(),void this.clearHoverStates();let h=null,u=0;const d=[],p=this.getTrack("weblogo");p&&p.isVisible()&&d.push({id:"weblogo",track:p});const m=this.getTrack("conservation");m&&m.isVisible()&&d.push({id:"conservation",track:m});let f=c;for(const{id:t,track:e}of d){const i=f-e.getHeight();if(n>=i&&n<f){h=t,u=n-i;break}f=i-Yi.TRACK_GAP}let g=null;if(h){const t=this.tracks.get(h);t&&(g=t.getMonomerAt(e,u,r))}if((this.previousHoverPosition!==r||this.previousHoverTrack!==h||this.previousHoverMonomer!==g)&&(this.previousHoverPosition=r,this.previousHoverTrack=h,this.previousHoverMonomer=g,h)){const t=this.tracks.get(h);t instanceof qi&&(t.setHovered(r,g),window.requestAnimationFrame((()=>this.redraw())))}if((r!==this.currentHoverPosition||h!==this.currentHoverTrack||g!==this.currentHoverMonomer)&&(this.currentHoverPosition=r,this.currentHoverTrack=h,this.currentHoverMonomer=g,h)){const e=this.tracks.get(h);if(e){const n=e.getTooltipContent(r,g);if(n)return void s.tooltip.show(n,t.clientX+16,t.clientY+16)}}h&&g||(this.hideTooltip(),this.clearHoverStates())}handleTooltipMouseLeave(){this.hideTooltip(),this.clearHoverStates(),window.requestAnimationFrame((()=>this.draw(this.config.x,this.config.y,this.config.width,this.config.height,this.config.currentPosition,this.config.windowStartPosition,{preventDefault:()=>{}},this.seqColumn?.name)))}hideTooltip(){this.currentHoverPosition=-1,this.currentHoverTrack=null,s.tooltip.hide()}draw(t,e,n,i,o,r,s,a){if(Object.assign(this.config,{x:t,y:e,width:n,height:i,currentPosition:o,windowStartPosition:r}),!this.isValid)return void(this.eventElement.style.display="none");this.ctx.save(),this.ctx.clearRect(t,e,n,i),this.ctx.translate(t,e),this.ctx.rect(0,0,n,i),this.ctx.clip(),this.determineVisibleTracks();const l=this.config.headerHeight>=Ki.WITH_TITLE();l&&Yi.TITLE_HEIGHT,a&&l&&this.drawColumnTitle(0,0,n,a);const c=i-Yi.SLIDER_HEIGHT,h=c-Yi.DOTTED_CELL_HEIGHT,u=h-Yi.TRACK_GAP,d=[],p=[],m=this.getTrack("weblogo");m&&m.isVisible()&&p.push({id:"weblogo",track:m});const f=this.getTrack("conservation");f&&f.isVisible()&&p.push({id:"conservation",track:f});let g=u;for(const{track:t}of p){const e=t.getHeight(),i=g-e;t.draw(0,i,n,e,this.config.windowStartPosition,this.config.positionWidth,this.config.totalPositions,this.config.currentPosition),d.unshift({y:i,height:e}),g=i-Yi.TRACK_GAP}if(this.drawDottedCells(0,h,n,Yi.DOTTED_CELL_HEIGHT,c),d.push({y:h,height:Yi.DOTTED_CELL_HEIGHT}),this.config.currentPosition>=1&&this.config.currentPosition<=this.config.totalPositions){const t=this.config.positionWidth,e=this.config.currentPosition-this.config.windowStartPosition;if(e>=0&&e<Math.floor(n/t)){const n=e*t+t/2;for(let t=0;t<d.length-1;t++){const e=d[t],i=d[t+1];this.ctx.strokeStyle="rgba(60, 177, 115, 0.4)",this.ctx.lineWidth=1,this.ctx.beginPath(),this.ctx.moveTo(n,e.y+e.height),this.ctx.lineTo(n,i.y),this.ctx.stroke()}}}this.drawTrackButtons(),this.ctx.restore(),s.preventDefault(),this.setupEventElement()}drawDottedCells(t,e,n,i,o){if(!this.ctx)return;const r=this.config.totalPositions,s=this.config.positionWidth,a=this.config.currentPosition,l=this.config.windowStartPosition,c=Math.floor(n/s),h=e+Yi.TOP_PADDING;this.drawSlider(t,o,n);for(let n=0;n<c;n++){const c=l+n;if(c>r)break;const u=t+n*s,d=s,p=u+d/2;this.config.cellBackground&&(this.ctx.fillStyle=n%2==0?"rgba(248, 248, 248, 0.3)":"rgba(242, 242, 242, 0.2)",this.ctx.fillRect(u,e,d,i),this.ctx.strokeStyle="rgba(220, 220, 220, 0.7)",this.ctx.beginPath(),this.ctx.moveTo(u,e),this.ctx.lineTo(u,o),this.ctx.stroke()),this.ctx.fillStyle="#999999",this.ctx.beginPath(),this.ctx.arc(p,h+5,1,0,2*Math.PI),this.ctx.fill(),(c===a||(1===c||c%10==0)&&Math.abs(c-a)>1)&&(this.ctx.fillStyle=Bi,this.ctx.font="12px monospace",this.ctx.textAlign="center",this.ctx.textBaseline="middle",this.ctx.fillText(c.toString(),p,h+15)),c===a&&(this.ctx.fillStyle="rgba(60, 177, 115, 0.2)",this.ctx.fillRect(u,e,d,i))}}drawSlider(t,e,n){if(!this.ctx)return;this.ctx.fillStyle=this.config.sliderColor,this.ctx.fillRect(t,e,n,Yi.SLIDER_HEIGHT);const i=Math.floor(n/this.config.positionWidth),o=this.config.windowStartPosition,r=this.config.totalPositions-i,s=this.sliderWidth,a=r<=0?0:(o-1)/r*(n-s),l=r<=0?n:s;if(this.ctx.fillStyle="rgba(150, 150, 150, 0.5)",this.ctx.fillRect(t+a,e,l,Yi.SLIDER_HEIGHT),this.config.currentPosition>=1&&this.config.currentPosition<=this.config.totalPositions){const i=(this.config.currentPosition-1)/(this.config.totalPositions-1),o=Math.round(i*n);this.ctx.fillStyle="#3CB173",this.ctx.fillRect(t+o-1,e-2,3,Yi.SLIDER_HEIGHT+4)}}setupEventElement(){this.eventElement.style.display="block",this.eventElement.style.left=`${this.config.x}px`,this.eventElement.style.top=`${this.config.y}px`,this.eventElement.style.width=`${this.config.width}px`,this.eventElement.style.height=`${this.config.height}px`}getCoords(t){const e=this.canvas.getBoundingClientRect();return{x:t.clientX-e.left-this.config.x,y:t.clientY-e.top-this.config.y}}isInHeaderArea(t){const{x:e,y:n}=this.getCoords(t);return e>=0&&e<=this.config.width&&n>=0&&n<=this.config.headerHeight}get positionWidth(){return this.config.positionWidth}set positionWidth(t){this.config.positionWidth=t}isInSliderArea(t){const{y:e}=this.getCoords(t),n=this.config.headerHeight-Yi.SLIDER_HEIGHT;return e>n&&e<n+Yi.SLIDER_HEIGHT}get sliderWidth(){const t=this.config.width/this.config.totalPositions*(this.config.width/this.config.positionWidth);return Math.max(t,20)}isInSliderDraggableArea(t){const{x:e,y:n}=this.getCoords(t),i=this.config.headerHeight-Yi.SLIDER_HEIGHT,o=Math.floor(this.config.width/this.config.positionWidth),r=this.config.windowStartPosition,s=this.config.totalPositions-o,a=s<=0?0:(r-1)/s*(this.config.width-this.sliderWidth);return n>i&&n<i+Yi.SLIDER_HEIGHT&&e>=a&&e<a+this.sliderWidth}setupEventListeners(){this.eventElement.addEventListener("mousemove",(t=>{this.isValid&&(this.isInSliderDraggableArea(t)?this.eventElement.style.cursor="grab":this.isInSliderArea(t)||this.isInHeaderArea(t)?this.eventElement.style.cursor="pointer":this.eventElement.style.cursor="default")})),this.eventElement.addEventListener("mousedown",this.handleMouseDown.bind(this)),this.eventElement.addEventListener("mousemove",this.handleMouseMove.bind(this)),this.eventElement.addEventListener("mouseup",this.handleMouseUp.bind(this)),this.eventElement.addEventListener("mouseleave",this.handleMouseUp.bind(this)),this.eventElement.addEventListener("click",this.handleSelectionClick.bind(this)),this.eventElement.addEventListener("click",this.handleClick.bind(this)),this.eventElement.addEventListener("wheel",this.handleMouseWheel.bind(this)),window.addEventListener("keydown",this.handleKeyDown.bind(this))}handleSelectionClick(t){if(!(this.isValid&&this.dataFrame&&this.seqColumn&&this.seqHandler))return;const{x:e,y:n}=this.getCoords(t);if(this.handleTrackButtonClick(e,n))return;const i=this.config.positionWidth,o=Math.floor(e/i),r=this.config.windowStartPosition+o-1;if(r<0||r>=this.config.totalPositions)return;const s=this.config.headerHeight>=Ki.WITH_TITLE()?Yi.TITLE_HEIGHT:0,a=this.config.headerHeight-Yi.SLIDER_HEIGHT-Yi.DOTTED_CELL_HEIGHT,l=a-Yi.TRACK_GAP;if(n>=a||n<s)return;let c=null,h=0;const u=[],d=this.getTrack("weblogo");d&&d.isVisible()&&u.push({id:"weblogo",track:d});const p=this.getTrack("conservation");p&&p.isVisible()&&u.push({id:"conservation",track:p});let m=l;for(const{id:t,track:e}of u){const i=m-e.getHeight();if(n>=i&&n<m){c=t,h=n-i;break}m=i-Yi.TRACK_GAP}if(c){const n=this.tracks.get(c);if(n){const i=n.getMonomerAt(e,h,r);if(i){if(this.onSelectionCallback)return void this.onSelectionCallback(r,i);this.selectRowsWithMonomerAtPosition(r,i),t.stopPropagation(),t.stopImmediatePropagation()}}}}selectRowsWithMonomerAtPosition(t,e){if(this.dataFrame&&this.seqHandler)try{const n=this.dataFrame.selection,i=this.seqHandler.getMonomersAtPosition(t,!0);n.init((t=>i[t]===e))}catch(t){console.error("Error selecting rows:",t)}}init(){if(this.canvas=this.config.canvas,!this.canvas)return void console.error("Canvas not found");const t=this.canvas.getContext("2d");t?(this.ctx=t,this.tracks.forEach((e=>e.init(t)))):console.error("Failed to get 2D context from canvas")}addTrack(t,e){this.ctx&&e.init(this.ctx),this.tracks.set(t,e)}removeTrack(t){this.tracks.delete(t)}getTrack(t){return this.tracks.get(t)}updateTrack(t,e){const n=this.getTrack(t);n&&e(n)}get isValid(){return!!this.canvas&&!!this.ctx&&this.config.height>=Ki.WITH_TITLE()}handleMouseDown(t){if(!this.isValid)return;const{x:e}=this.getCoords(t);this.isInSliderDraggableArea(t)&&(this.state.isDragging=!0,this.state.dragStartX=e,this.handleSliderDrag(e),t.preventDefault(),t.stopPropagation(),t.stopImmediatePropagation())}handleMouseWheel(t){if(this.isValid&&this.isInHeaderArea(t)){t.preventDefault(),t.stopPropagation(),t.stopImmediatePropagation();const e=t.shiftKey?Math.sign(t.deltaY):Math.sign(t.deltaX||t.deltaY),n=t.shiftKey?3:1,i=this.config.windowStartPosition+e*n,o=Math.floor(this.config.width/this.config.positionWidth),r=this.config.totalPositions-o+1;this.config.windowStartPosition=Math.max(1,Math.min(r,i)),"function"==typeof this.config.onPositionChange&&this.config.onPositionChange(this.config.currentPosition,this.getWindowRange())}}handleMouseMove(t){if(!this.state.isDragging||!this.isValid)return;const e=this.canvas.getBoundingClientRect(),n=t.clientX-e.left-this.config.x;this.handleSliderDrag(n),t.preventDefault(),t.stopPropagation(),t.stopImmediatePropagation()}handleKeyDown(t){if(this.isValid&&!(this.config.currentPosition<1)&&document.activeElement?.contains(this.eventElement)&&"block"===this.eventElement.style.display){if("ArrowLeft"===t.key||"ArrowRight"===t.key){t.preventDefault(),t.stopPropagation(),t.stopImmediatePropagation();const e="ArrowLeft"===t.key?-1:1,n=Math.min(Math.max(this.config.currentPosition+e,1),this.config.totalPositions);if(n===this.config.currentPosition)return;this.config.currentPosition=n;const i=Math.floor(this.config.width/this.config.positionWidth),o=this.config.windowStartPosition;(n<o||n>o+i-1)&&(this.config.windowStartPosition=e<0?n:Math.max(1,n-i+1))}else{if("Escape"!==t.key)return;this.config.currentPosition=-2,t.preventDefault(),t.stopPropagation(),t.stopImmediatePropagation()}"function"==typeof this.config.onPositionChange&&this.config.onPositionChange(this.config.currentPosition,this.getWindowRange())}}handleMouseUp(){this.state.isDragging=!1}handleSliderDrag(t){if(!this.isValid)return;const e=this.sliderWidth,n=this.config.width-e,i=Math.max(0,Math.min(this.config.width,t)),o=Math.floor(this.config.width/this.config.positionWidth),r=Math.floor(this.config.width/this.config.positionWidth),s=this.config.totalPositions-r,a=Math.max(0,i-e/2)/n*s;this.config.windowStartPosition=Math.max(1,Math.min(a,this.config.totalPositions-o+1)),"function"==typeof this.config.onPositionChange&&this.config.onPositionChange(this.config.currentPosition,this.getWindowRange())}get headerHeight(){return this.config.headerHeight}set headerHeight(t){this.config.headerHeight=t}handleClick(t){if(!this.isValid)return;t.clientX,this.canvas.getBoundingClientRect().left,t.clientY,this.canvas.getBoundingClientRect().top;const{x:e,y:n}=this.getCoords(t);if(this.handleTrackButtonClick(e,n))return t.preventDefault(),void t.stopPropagation();if(n<this.config.headerHeight-Yi.SLIDER_HEIGHT&&n>=0){const t=this.config.positionWidth,n=Math.round(e/t-.5),i=this.config.windowStartPosition+n;i>=1&&i<=this.config.totalPositions&&(this.config.currentPosition=i,"function"==typeof this.config.onPositionChange&&this.config.onPositionChange(this.config.currentPosition,this.getWindowRange()))}}getWindowRange(){return{start:this.config.windowStartPosition,end:Math.min(this.config.totalPositions,this.config.windowStartPosition+Math.floor(this.config.width/this.config.positionWidth))}}updateConfig(t){Object.assign(this.config,t),this.config.currentPosition=Math.min(this.config.currentPosition,this.config.totalPositions),"function"==typeof this.config.onPositionChange&&this.config.onPositionChange(this.config.currentPosition,this.getWindowRange())}getCurrentPosition(){return this.config.currentPosition}setCurrentPosition(t){this.config.currentPosition=Math.max(1,Math.min(this.config.totalPositions,t)),"function"==typeof this.config.onPositionChange&&this.config.onPositionChange(this.config.currentPosition,this.getWindowRange())}getHeightThresholds(){return{BASE:Ki.BASE,WITH_TITLE:Ki.WITH_TITLE(),WITH_WEBLOGO:Ki.WITH_WEBLOGO(),WITH_BOTH:Ki.WITH_BOTH()}}}class Xi{static conservationCache=new a.LruCache(100);static webLogoCache=new a.LruCache(100);static lastInvalidationTime=0;static CHUNK_SIZE=50;static clearAllCaches(){Xi.conservationCache=new a.LruCache(100),Xi.webLogoCache=new a.LruCache(100),Xi.lastInvalidationTime=Date.now()}static getLastInvalidationTime(){return Xi.lastInvalidationTime}static getChunkCacheKey(t,e,n){const i=t.dataFrame;return`${i.id}_${t.name}_f${i.filter.version}_${e}_${n}`}static getConservationChunk(t,e,n,i){return Xi.conservationCache.getOrCreate(i,(()=>{const o=Xi.getWebLogoChunk(t,e,n,i),r=new Array(n-e).fill(0);for(let i=e;i<n;i++){const n=o.get(i);if(!n||0===n.size)continue;let s=0,a=0;const l=t.defaultGapOriginal;for(const[t,e]of n.entries())t&&t!==l&&(s+=e,e>a&&(a=e));r[i-e]=s>0?a/s:0}return r}))}static getWebLogoChunk(t,e,n,i){return Xi.webLogoCache.getOrCreate(i,(()=>{const i=t.column.dataFrame,o=new Map,r=i.filter.trueCount;if(r<=1)return o;for(let t=e;t<n;t++)o.set(t,new Map);const s=i.filter,a=1/r;for(let i=-1;-1!==(i=s.findNext(i,!0));){const r=t.getSplitted(i).getOriginalRegion(e,n);if(0!==r.length)for(let t=0;t<r.length;t++){const n=r[t],i=o.get(e+t);i.set(n,(i.get(n)||0)+a)}}return o}))}static getConservationForViewport(t,e,n,i){const o=new Array(i).fill(0),r=Math.floor(e/Xi.CHUNK_SIZE)*Xi.CHUNK_SIZE,s=Math.ceil(n/Xi.CHUNK_SIZE)*Xi.CHUNK_SIZE;for(let e=r;e<s;e+=Xi.CHUNK_SIZE){const n=Math.min(e+Xi.CHUNK_SIZE,i),r=Xi.getChunkCacheKey(t.column,e,n),s=Xi.getConservationChunk(t,e,n,r);for(let t=0;t<s.length&&e+t<i;t++)o[e+t]=s[t]}return o}static getWebLogoForViewport(t,e,n,i){const o=new Map,r=Math.floor(e/Xi.CHUNK_SIZE)*Xi.CHUNK_SIZE,s=Math.ceil(n/Xi.CHUNK_SIZE)*Xi.CHUNK_SIZE;for(let e=r;e<s;e+=Xi.CHUNK_SIZE){const n=Math.min(e+Xi.CHUNK_SIZE,i),r=Xi.getChunkCacheKey(t.column,e,n),s=Xi.getWebLogoChunk(t,e,n,r);for(const[t,e]of s.entries())t<i&&o.set(t,e)}return o}}class Ji extends qi{seqHandler;maxLength;lastViewportStart=-1;lastViewportEnd=-1;lastInvalidationTime=0;forceNextUpdate=!1;constructor(t,e,n=45,i="WebLogo"){super(new Map,n,"",i),this.seqHandler=t,this.maxLength=e,this.visible=t.column.dataFrame.filter.trueCount>1}forceUpdate(){this.forceNextUpdate=!0}resetViewportTracking(){this.lastViewportStart=-1,this.lastViewportEnd=-1}updateForViewport(t,e){const n=Xi.getLastInvalidationTime(),i=n>this.lastInvalidationTime;if(!(Math.abs(this.lastViewportStart-t)>=10||Math.abs(this.lastViewportEnd-e)>=10||i||this.forceNextUpdate))return;this.forceNextUpdate=!1,this.lastViewportStart=t,this.lastViewportEnd=e,this.lastInvalidationTime=n;const o=Math.max(0,t-20),r=Math.min(this.maxLength,e+20),s=Xi.getWebLogoForViewport(this.seqHandler,o,r,this.maxLength);this.updateData(s)}draw(t,e,n,i,o,r,s,a){const l=Math.ceil(n/r)+2,c=Math.min(o+l,s);this.updateForViewport(o-1,c-1),super.draw(t,e,n,i,o,r,s,a)}}class Qi extends zi{seqHandler;maxLength;lastViewportStart=-1;lastViewportEnd=-1;lastInvalidationTime=0;forceNextUpdate=!1;constructor(t,e,n=45,i="default",o="Conservation"){super([],n,i,o),this.seqHandler=t,this.maxLength=e,this.visible=t.column.dataFrame.filter.trueCount>1}forceUpdate(){this.forceNextUpdate=!0}resetViewportTracking(){this.lastViewportStart=-1,this.lastViewportEnd=-1}updateForViewport(t,e){const n=Xi.getLastInvalidationTime(),i=n>this.lastInvalidationTime;if(!(Math.abs(this.lastViewportStart-t)>=10||Math.abs(this.lastViewportEnd-e)>=10||i||this.forceNextUpdate))return;this.forceNextUpdate=!1,this.lastViewportStart=t,this.lastViewportEnd=e,this.lastInvalidationTime=n;const o=Math.max(0,t-20),r=Math.min(this.maxLength,e+20),s=Xi.getConservationForViewport(this.seqHandler,o,r,this.maxLength);this.updateData(s)}draw(t,e,n,i,o,r,s,a){const l=Math.ceil(n/r)+2,c=Math.min(o+l,s);this.updateForViewport(o-1,c-1),super.draw(t,e,n,i,o,r,s,a)}}const to=new si;async function eo(){return await dn.getInstance()}class no{_palette;constructor(t){this._palette=t}get(t){return this._palette[t]}}let io=null;async function oo(){null===io&&(io=async function(){const t="Bio: _package.initBio()";to.logger.debug(`${t}, start`);const e=window.performance.now(),n=await(0,Pt.j)(),i=await to.getProperties(),o=new ri(i);to.properties=o;const s=await dn.getInstance(),l=await(0,Nt.ub)();l.explicit&&(l.explicit=[],await(0,Nt.Eu)(l)),await s.awaitLoaded(1/0),s.initialLoadCompleted||await s.loadMonomerLib(),s.loadMonomerSets();const c=s.getMonomerLib(),u=s.getMonomerSets(),d=window.performance.now();to.logger.debug(`${t}, loading ET: ${d-e} ms`);const p=new Di(s,n);to.completeInit(p,c,u,n),to.logger.debug(`${t}, end`),function(){const t=t=>{setTimeout((()=>{if(t.isDetached)return;const e=t.dataFrame;if(!e)return;const n=e.columns.bySemTypeAll(a.SEMTYPE.MACROMOLECULE);for(const i of n){const n=to.seqHelper.getSeqHandler(i);if(!n)continue;if(n.isHelm()||n.alphabet===gt.YI.UN)continue;const o=t.col(i.name);if(!o)continue;let s=!!t.tableView&&Array.from(t.tableView.viewers).some((t=>"Sequence Position Statistics"===t.type));const l=n.isMsa(),c=(t,e)=>Number.isNaN(t)?e:t,u=()=>c(Math.max(Number.parseInt(i.getTag(gt.gp.positionShift)??"0"),0),0)+1,d=()=>c(Number.parseInt(i.getTag(gt.gp.selectedPosition)??"-2"),-2),p=()=>kt.Jy.getFontSettings(i).fontWidth;let m=0,f=0;const g=i.categories;for(let t=0;t<g.length;t++){const e=g[t];e&&e.length>f&&(f=e.length,m=t)}const y=g[m],b=n.splitter(y),v=b?b.length:30,w={WITH_TITLE:58,WITH_WEBLOGO:107,WITH_BOTH:156};let C;C=i.length>1e5||v<50?w.WITH_TITLE:i.length>5e4?w.WITH_WEBLOGO:w.WITH_BOTH;let A=null,S=null;const x=a.debounce(h.merge(e.onFilterChanged,e.onDataChanged.pipe((0,R.filter)((t=>t?.args?.column===i)))),100).subscribe((()=>{Xi.clearAllCaches(),A&&(A.resetViewportTracking(),A.forceUpdate()),S&&(S.resetViewportTracking(),S.forceUpdate()),setTimeout((()=>{t.isDetached||t.invalidate()}),50)}));t.sub(x);const E=r=>{const c=[],h=new Qi(n,v,45,"default","Conservation");S=h,c.push({id:"conservation",track:h,priority:1});const m=new Ji(n,v,45,"WebLogo");A=m,r&&(m.setMonomerLib(r),m.setBiotype(n.defaultBiotype||"HELM_AA")),m.setupDefaultTooltip(),c.push({id:"weblogo",track:m,priority:2});const f=new Zi({canvas:t.overlay,headerHeight:C,totalPositions:v+1,onPositionChange:(e,n)=>{setTimeout((()=>{const o=u(),r=d();if(o!==n.start&&i.setTag(gt.gp.positionShift,(n.start-1).toString()),r!==e&&(i.setTag(gt.gp.selectedPosition,e.toString()),e>=0&&!s&&t.tableView)){s=!0;const e=t.tableView.addViewer("Sequence Position Statistics",{sequenceColumnName:i.name});t.tableView.dockManager.dock(e,a.DOCK_TYPE.DOWN,null,"Sequence Position Statistics",.4)}}))},onHeaderHeightChange:e=>{t.isDetached||e<w.WITH_TITLE||setTimeout((()=>t.props.colHeaderHeight=e))}});f.setupTooltipHandling(),c.forEach((({id:t,track:e})=>{f.addTrack(t,e)})),f.setSelectionData(e,i,n),v>50&&(t.props.colHeaderHeight=C,setTimeout((()=>{t.isDetached||(o.width=400)}),300)),t.sub(t.onCellRender.subscribe((t=>{const e=t.cell;if(!e||!e.isColHeader||e?.gridColumn?.name!==o?.name)return;const n=t.bounds;if(!n)return;f.headerHeight=n.height;const r=p();f.positionWidth=r+(l?8:0);const s=u(),a=l?0:4;f.draw(n.x+a,n.y,n.width-a,n.height,d(),s,t,i.name)})))};(0,bt.pj)().then((t=>{const e=t.getMonomerLib();E(e)})).catch((t=>{r.shell.warning("Failed to initialize monomer library"),console.error("Failed to initialize monomer library:",t)}))}}),1e3)},e=(r.events.onViewerAdded.subscribe((e=>{if(!(e.args&&e.args.viewer instanceof a.Grid))return;const n=e.args.viewer;t(n)})),r.shell.tableViews);for(const n of e){const e=n?.grid;e&&t(e)}}()}()),await io}function ro(t){const e=new hi(t,to.seqHelper);return e.init().then((()=>{})).catch((t=>{const e=t instanceof Error?t.message:t.toString();r.shell.error(e)})),e}function so(){return to.monomerLib}function ao(t){return to.seqHelper.getSeqHandler(t)}function lo(t){const e="getRegionTopMenu",n=a.Func.find({package:to.name,name:e});if(1!==n.length)throw new Error(`Package '${to.name}' func '${e}' not found`);const i=n[0].prepare({table:t.dataFrame,sequence:t});return new mi(i,to.seqHelper).widget()}async function co(t){return async function(){const t=s.label("Manage monomer libraries");return mn()(t).addClass("d4-link-action"),t.onclick=async()=>await Bn(),new a.Widget(t)}()}function ho(t){try{new mi(t,to.seqHelper).dialog()}catch(t){const e=t instanceof Error?t.message:t.toString(),n=t instanceof Error?t.stack:void 0;r.shell.error(`Get region editor error: ${e}`),to.logger.error(e,void 0,n)}}function uo(t){const e=new ti;s.dialog({title:"Split to Monomers"}).add(e.paramsUI).onOK((async()=>t.func.prepare(e.funcParams).call(!0))).show()}function po(t){const e=new $({semtype:a.SEMTYPE.MACROMOLECULE}),n=s.dialog({title:"Sequence Space"}).add(e.getEditor()).onOK((async()=>{const n=e.getParams();return t.func.prepare({molecules:n.col,table:n.table,methodName:n.methodName,similarityMetric:n.similarityMetric,plotEmbeddings:n.plotEmbeddings,options:n.options,preprocessingFunction:n.preprocessingFunction,clusterEmbeddings:n.clusterEmbeddings}).call()}));n.history((()=>({editorSettings:e.getStringInput()})),(t=>e.applyStringInput(t.editorSettings))),n.show()}function mo(t){const e=new St({semtype:a.SEMTYPE.MACROMOLECULE}),n=s.dialog({title:"Activity Cliffs"}).add(e.getEditor()).onOK((async()=>{const n=e.getParams();return t.func.prepare({table:n.table,molecules:n.col,activities:n.activities,similarity:n.similarityThreshold,methodName:n.methodName,similarityMetric:n.similarityMetric,preprocessingFunction:n.preprocessingFunction,options:n.options}).call()}));n.history((()=>({editorSettings:e.getStringInput()})),(t=>e.applyStringInput(t.editorSettings))),n.show()}function fo(){return new Yt}function go(){return new Yt}function yo(){return new Yt}function bo(t){return function(t){const e=Array.from(t.dataFrame.columns).filter((t=>t.semType===a.SEMTYPE.MOLECULE)).map((t=>t.name));new Set(e).delete(t.name);let n=to.properties?to.properties.maxMonomerLength:4;if(Rt.gp.maxMonomerLength in t.tags){const e=parseInt(t.getTag(Rt.gp.maxMonomerLength));n=isNaN(e)?n:e}if(".mm.cellRenderer.maxMonomerLength"in t.temp){const e=parseInt(t.temp[".mm.cellRenderer.maxMonomerLength"]);n=isNaN(e)?n:e}const i=s.input.int("Max Monomer Length",{value:n,nullable:!0,min:1,max:50,step:1,onValueChanged:e=>{if(0==e)setTimeout((()=>{i.value=null}),0);else{const n=e??"",i=null==n?"":n.toString();t.temp[".mm.cellRenderer.maxMonomerLength"]=i,t.temp[".mm.cellRenderer.settingsChanged"]=Dt.s.true,t.dataFrame.fireValuesChanged()}},tooltipText:"The max length of monomer symbol displayed without shortening, empty to no limit"});let o=to.properties?to.properties.fontSize:12;".mm.cellRenderer.fontSize"in t.temp&&t.temp[".mm.cellRenderer.fontSize"]&&!isNaN(t.temp[".mm.cellRenderer.fontSize"])&&(o=t.temp[".mm.cellRenderer.fontSize"]);const r=s.input.int("Font Size",{value:o,nullable:!0,min:1,max:50,step:1,onValueChanged:e=>{if(e&&e>0){const n=e??12;t.temp[".mm.cellRenderer.fontSize"]=n,t.temp[".mm.cellRenderer.settingsChanged"]=Dt.s.true,t.dataFrame.fireValuesChanged()}},tooltipText:"The font size of monomer symbol in sequence renderer"}),l=s.input.int("Monomer Margin",{value:t.temp[".mm.cellRenderer.gapLength"]??0,onValueChanged:e=>{t.temp[".mm.cellRenderer.gapLength"]=e,t.temp[".mm.cellRenderer.settingsChanged"]=Dt.s.true,t.dataFrame.fireValuesChanged()},tooltipText:"The size of margin between monomers (in pixels)"}),c=s.input.bool("Color Code",{value:null==t?.temp["color-code"]||t.temp["color-code"],onValueChanged:e=>{t.temp["color-code"]=e,t.dataFrame.fireValuesChanged()},tooltipText:"Color code"}),h=s.input.string("Reference Sequence",{value:null!=t?.temp["reference-sequence"]?t?.temp["reference-sequence"]:"",nullable:!0,onValueChanged:e=>{t.temp["reference-sequence"]=e,t.dataFrame.fireValuesChanged()},tooltipText:"Reference sequence is not empty, then the sequence will be render \nas a difference from the reference sequence"}),u=s.input.bool("Compare with current",{value:null==t?.temp["compare-with-current"]||t.temp["compare-with-current"],onValueChanged:e=>{t.temp["compare-with-current"]=e,t.dataFrame.fireValuesChanged()},tooltipText:'When on, all sequences get rendered in the "diff" mode'}),d=s.inputs([r,i,l,h,c,u]);return new a.Widget(d)}(t)}function vo(t){return function(t,e,n){const i=s.div();i.classList.add("macromolecule-cell-comp-analysis-host");const o=t.cell.column.tags[gt.gp.alphabet],r=o===gt.YI.DNA||o===gt.YI.RNA?Ft.o.NUCLEOTIDE:Ft.o.AA,l={},c=n.getSeqHandler(t.cell.column),h=t.cell.rowIndex,u=c.getSplitted(h);ot().count(0).take(u.length).filter((t=>!u.isGap(t))).forEach((t=>{let e=u.getCanonical(t);r===Ft.o.NUCLEOTIDE&&c.isHelm()&&"("===e[1]&&")"===e[e.length-2]&&(e=e.substring(2,e.length-2));const n=l[e]||0;l[e]=n+1}));const d=(0,ci.F)(l,r,e);return Array.from(d.rows).forEach((t=>{const e=t.getElementsByClassName("macromolecule-cell-comp-analysis-bar")[0].style.backgroundColor;t.cells[0].style.color=e})),i.appendChild(d),new a.Widget(i)}(t,to.monomerLib,to.seqHelper)}function wo(){return new Zt}function Co(t,e,n,i,o){const r=new he.$(i,o,n,e);return"Local alignment"==t?r.smithWaterman():r.needlemanWunsch()}function Ao(){return new oe.oP}function So(){return new ce}function xo(t,e,n,i){return ui(t,e??null,n??null,i??null)}async function Eo(t,e,n,i,o){const s=ui(e,n??null,i??null,o??null);e.dataFrame.columns.add(s),await r.data.detectSemanticTypes(e.dataFrame)}async function To(t,e,n,i,o,h,u,d,p){if(t.name!==r.shell.tv.dataFrame.name)return void r.shell.error(`Table ${t.name} is not a current table view`);if(!(0,Zn.V)(e,"Activity Cliffs"))return;const m=Mt(t),f={units:e.meta.units,aligned:e.getTag(gt.gp.aligned),separator:e.getTag(gt.gp.separator),alphabet:e.getTag(gt.gp.alphabet)},g=h,y=e,b=async()=>await mt(t,y,m,"Activity cliffs",n,i,g,o,{...d??{}},a.SEMTYPE.MACROMOLECULE,f,u,me,fe,ve,void 0,p),v=o===c.c.UMAP?2e5:2e4,w=o===c.c.UMAP?5e3:2e3;if(t.rowCount>v)return void r.shell.warning(`Too many rows, maximum for sequence activity cliffs is ${v}`);const C=a.TaskBarProgressIndicator.create("Running sequence activity cliffs ...");return new Promise(((e,n)=>{t.rowCount>w&&!d?.[l.vb]?s.dialog().add(s.divText("Activity cliffs analysis might take several minutes.\n Do you want to continue?")).onOK((async()=>{b().then((t=>e(t))).catch((t=>n(t)))})).onCancel((()=>{e(void 0)})).show():b().then((t=>e(t))).catch((t=>n(t)))})).catch((t=>{const[e,n]=(0,Ct.AP)(t);throw to.logger.error(e,void 0,n),t})).finally((()=>{C.close()}))}async function _o(t,e,n=1,i=.6,o="Morgan"){if(t.semType!==a.SEMTYPE.MACROMOLECULE)return{entries:t.toList(),options:{}};const{seqList:r,options:s}=await de(t,e,o);return{entries:r,options:{...s,gapOpen:n,gapExtend:i}}}async function Mo(t,e){t.version!==t.temp["last-invalidated-version"]&&await(0,pe.BQ)(t,to.seqHelper,!1);const n=t.temp["monomeric-mols"],i=await r.functions.call("Chem:getMorganFingerprints",{molColumn:n}),o=new Array(i.length).fill(null);for(let t=0;t<i.length;t++){if(i.isNone(t)||!i.get(t))continue;const e=i.get(t);o[t]=V.A.fromUint32Array(e.length,new Uint32Array(e.getBuffer().buffer))}return{entries:o,options:{}}}async function Io(t,e,i,o,c,h,u,d,p){if(t.name!==r.shell.tv.dataFrame.name)return void r.shell.error(`Table ${t.name} is not a current table view`);const m=r.shell.tv.dataFrame==t?r.shell.tv:void 0;return(0,Zn.V)(e,"Sequence Space")?(h||(h=a.Func.find({name:"macromoleculePreprocessingFunction",package:"Bio"})[0]),u??={},await async function(t,e,i,o,c,h,u,d=!0,p=!1,m={preprocessingFuncArgs:[]},f={},g=null,y={},b){const v={showXAxis:!1,showYAxis:!1,showXSelector:!1,showYSelector:!1};if(e.length!==o.length||e.length!==h.length||e.length!==c.length||e.length!==m.preprocessingFuncArgs.length)throw new Error("columns, metrics and preprocessing functions, weights and function argumentsmust have the same length");const w=d?f.tableView??r.shell.tableView(t.name)??r.shell.addTableView(t):null,C=async()=>{const C=a.TaskBarProgressIndicator.create(`Initializing ${f.scatterPlotName??"dimensionality reduction"} ...`);let A;try{const S=Mt(t);function x(n,o,r){let c=null,h=null;t.columns.names().includes(S[0])?(c=t.columns.byName(S[0]),h=t.columns.byName(S[1])):(c=t.columns.add(a.Column.float(S[0],t.rowCount)),h=t.columns.add(a.Column.float(S[1],t.rowCount)),d&&!A&&(A=w.scatterPlot({...v,x:S[0],y:S[1],title:f.scatterPlotName??It(e,i)}))),f[l.YP]&&(A?.root&&s.setUpdateIndicator(A.root,!1),c.init((t=>r[0]?r[0][t]:void 0)),h.init((t=>r[1]?r[1][t]:void 0)));const u=n/o*100;C.update(u,`Running ${f.scatterPlotName??"dimensionality reduction"}... ${u.toFixed(0)}%`)}async function E(){t.columns.add(a.Column.float(S[0],t.rowCount)),t.columns.add(a.Column.float(S[1],t.rowCount));let n=null;d&&(A=w.scatterPlot({...v,x:S[0],y:S[1],title:f.scatterPlotName??It(e,i)}),s.setUpdateIndicator(A.root,!0));const p=r.events.onViewerClosed.subscribe((t=>{const e=t.args.viewer;e?.getOptions()?.look?.title&&A?.getOptions()?.look?.title&&e?.getOptions()?.look?.title===A?.getOptions()?.look?.title&&(r.events.fireCustomEvent(q.S,{}),p.unsubscribe(),n?.(),C.close())})),g=new Promise((async(r,s)=>{try{n=r;const s=[];let a=o,d=c,p=u;if(b&&e.every((t=>t.isNumerical))){const n=e.map((t=>t.toList())),i=new Array(t.rowCount).fill(0).map(((t,n)=>new Float32Array(e.length)));for(let o=0;o<e.length;++o)for(let e=0;e<t.rowCount;++e)i[e][o]=n[o][e];m.distanceFnArgs=[{}],s.push({entries:i,options:{}}),a=[b],d=[1],p="MANHATTAN"}else for(let t=0;t<h.length;++t){const n=h[t];if(m.distanceFnArgs||(m.distanceFnArgs=[]),n){const i=n.inputs[0].name,r=n.inputs[1].name,{entries:a,options:l}=await n.apply({[i]:e[t],[r]:o[t],...m.preprocessingFuncArgs[t]??{}});s.push({entries:a,options:l}),m.distanceFnArgs.push(l)}else{const n=e[t].toList(),i={};s.push({entries:n,options:i}),m.distanceFnArgs.push(i)}}r(await Y(s.map((t=>t.entries)),i,a,d,u,m,f[l.vb]?void 0:x))}catch(t){s(t)}})),y=await g;return C.close(),p.unsubscribe(),y}const T=await E();if(p&&T){const _=a.TaskBarProgressIndicator.create("Clustering embeddings ...");try{const M=await function(t,e,i,o){return _t(this,void 0,void 0,(function*(){return new Promise((function(r,s){const a=new Worker(new URL(n.p+n.u(682),n.b));a.postMessage({embedX:t,embedY:e,minPts:o,epsilon:i}),a.onmessage=({data:{error:t,clusters:e}})=>{a.terminate(),t?s(t):r(e)}}))}))}(T[0],T[1],m.dbScanEpsilon??.01,m.dbScanMinPts??4),I=t.columns.getUnusedName("Cluster (DBSCAN)");t.columns.addNewString(I).init((t=>M[t].toString())),A&&(A.props.colorColumnName=I)}catch(L){r.shell.error("Clustering embeddings failed"),console.error(L)}finally{_.close()}}if(T){const N=t.columns.byName(S[0]),P=t.columns.byName(S[1]);if(N.init((t=>T[0][t])),P.init((t=>T[1][t])),g)try{const $=g.inputs[0].name,R=g.inputs[1].name;await g.prepare({[$]:N,[R]:P,...y}).call(!0)}catch(k){r.shell.error("Post-processing failed"),console.error(k)}if(A)return s.setUpdateIndicator(A.root,!1),A.helpUrl="/help/compute/sequence-space",A}}catch(O){r.shell.error("Dimensionality reduction failed"),console.error(O),C.close(),A&&s.setUpdateIndicator(A.root,!1)}};return new Promise((async(e,n)=>{try{if(f.fastRowCount&&t.rowCount>f.fastRowCount&&!f[l.vb])s.dialog().add(s.divText("Analysis might take several minutes. Do you want to continue?")).onOK((async()=>{try{const t=await C();e(t)}catch(t){n(t)}})).onCancel((()=>e(void 0))).show();else{const t=await C();e(t)}}catch(t){n(t)}}))}(t,[e],i,[o],[1],[h],"MANHATTAN",c,d??!1,{...u,preprocessingFuncArgs:[u.preprocessingFuncArgs??{}]},{fastRowCount:1e4,scatterPlotName:"Sequence space",bypassLargeDataWarning:u?.[l.vb],tableView:m})):void 0}async function Lo(t,e,n,i=!1){const o=a.TaskBarProgressIndicator.create("Converting to atomic level ...");try{await io;const o=e.temp[".mm.cellRenderer.overriddenLibrary"]??to.monomerLib,r=to.seqHelper,s=to.rdKitModule;await(0,fi.V)(t,e,n,i,o,r,s)}finally{o.close()}}async function No(t){if(!t?.dataFrame)throw new Error("Sequence column is not found or its data frame is not empty");const e=a.Func.find({name:"toAtomicLevel",package:"Bio"})[0];if(!e)throw new Error("To Atomic level Function not found");e.prepare({table:t.dataFrame,seqCol:t}).edit()}async function Po(t){return async function(t){const e=s.divText(""),n=a.Widget.fromRoot(e);try{if(!t||!t.value)return e.innerText="No sequence provided",n;if(!(t.cell&&t.cell.dart&&t.cell.dataFrame&&t.cell.column))return e.innerText="Atomic level conversion requeires a sequence column",n;if(![gt.Hi.FASTA,gt.Hi.SEPARATOR,gt.Hi.HELM].includes(t.cell.column.meta.units?.toLowerCase()??""))return e.innerText="Unsupported sequence notation. please use Bio | Polytool | Convert",n;const i=(await Ar()).getSeqHandler(t.cell.column);if(!i)return e.innerText="No sequence handler found",n;if((i.getSplitted(t.cell.rowIndex,50)?.length??100)>40)return e.innerText="Maximum number of monomers is 40",n;const o=a.Column.fromStrings("singleVal",[t.value]),l=a.DataFrame.fromColumns([o]);if(Object.entries(t.cell.column.tags).forEach((([t,e])=>{o.setTag(t,e)})),await Lo(l,o,t.cell.column.meta.units===gt.Hi.HELM,!1),l.columns.length<2)return e.innerText="No structure generated",n;const c=l.columns.byIndex(1),h=c.get(0);if(!h)return e.innerText="No structure generated",n;c.semType=a.SEMTYPE.MOLECULE;const u=a.SemanticValue.fromTableCell(l.cell(0,c.name)),d=s.panels.infoPanel(u);let p=null;d&&(p=a.Widget.fromRoot(d.root));const m=r.chem.drawMolecule(h,300,300,!1);return m.style.cursor="pointer",s.tooltip.bind(m,"Click to expand"),m.onclick=()=>{const t=window.innerWidth-200,e=window.innerHeight-200,n=r.chem.drawMolecule(h,t,e,!1);s.dialog({title:"Molecule"}).add(n).showModal(!0)},p&&p.root.prepend(m),p??a.Widget.fromRoot(m)}catch(t){to.logger.error(t)}return e.innerText="No Structure generated",n}(t)}function $o(){(0,Jn.D)({},to.seqHelper).catch((t=>{const[e,n]=(0,Ct.AP)(t);if(t instanceof Xn.Ap)return r.shell.warning(t.element),void to.logger.warning(e);r.shell.error(e),to.logger.error(e,void 0,n)}))}async function Ro(t=null,e=null,n){return(0,Jn.D)({col:t,clustersCol:e,...n},to.seqHelper)}async function ko(){const t=r.shell.tv,e=t.dataFrame.columns.toList().filter((t=>t.semType==a.SEMTYPE.MACROMOLECULE&&(to.seqHelper.getSeqHandler(t),!0))),n=async e=>{if(!(0,Zn.V)(e,"Composition"))return;const n=t.addViewer("WebLogo",{sequenceColumnName:e.name});r.shell.tv.dockManager.dock(n,a.DOCK_TYPE.DOWN,null,"Composition analysis",.25)};let i=null;if(0!=e.length){if(e.length>1){const t=e.map((t=>t.name)),i=e.find((t=>to.seqHelper.getSeqHandler(t).isMsa())),o=s.input.choice("Column",{value:i?i.name:t[0],items:t});s.dialog({title:"Composition Analysis",helpUrl:"https://datagrok.ai/help/datagrok/solutions/domains/bio/#sequence-composition"}).add(s.div([o])).onOK((async()=>{const t=e.find((t=>t.name==o.value))??null;t&&await n(t)})).show()}else i=e[0];i&&await n(i)}else r.shell.error("Current table does not contain sequences")}function Oo(t){return new yt.m(t).importFasta()}function Ho(t){return console.log(t),[]}function Go(){const t=(0,$t.me)()[0];(0,Te.C)(t,to.seqHelper)}function Fo(t){(0,Te.C)(t,to.seqHelper)}function Do(){return new ii}async function Bo(t){const e=a.TaskBarProgressIndicator.create("Test detectMacromolecule..."),n=(await r.dapi.files.list(t,!0,"")).filter((t=>t.fileName.endsWith(".csv")));let i=0;const o=[];for(const s of n)try{const e=await r.dapi.files.readAsText(t+s.fullPath),n=a.DataFrame.fromCsv(e);for(const t of n.columns)await r.functions.call("Bio:detectMacromolecule",{col:t})===a.SEMTYPE.MACROMOLECULE&&o.push({file:s.path,result:"detected",column:t.name,message:`units: ${t.meta.units}`})}catch(t){o.push({file:s.path,result:"error",column:null,message:t instanceof Error?t.message:t.toString()})}finally{i+=1,e.update(100*i/n.length,`Test ${s.fileName}`)}r.shell.info("Test Demo:Files for detectMacromolecule finished."),e.close();const s=a.DataFrame.fromObjects(o);return s.name=`datasets_detectMacromolecule_${t}`,s}async function Vo(t,e){return await async function(t,e){if(await(0,te.cb)(10),!(0,Zn.V)(e,"Sequence space"))return t;const n=to.seqHelper,i=(0,vt.R)(e,n);i.name="splitToMonomers";const o=e.dataFrame;for(const t of i.columns)t.semType=Wt.uF.MONOMER,t.setTag(wt.gp.alphabet,e.getTag(wt.gp.alphabet));const s=/(\d+)(?: \((\d+)\))?/,l=t=>{s.lastIndex=0;const e=t.match(s);return e?`${e[1]} (${parseInt(e[2]??"0")+1})`:t};for(let t=0;t<i.columns.length;t++){const n=i.columns.byIndex(t);n.semType=Wt.uF.MONOMER,n.setTag(wt.gp.alphabet,e.getTag(wt.gp.alphabet));const r=100;let s=0;for(;o.columns.byName(n.name)&&s<r;)n.name=l(n.name),s++;o.columns.add(n)}await r.data.detectSemanticTypes(o);for(let t=0;t<i.columns.length;t++){const e=i.columns.byIndex(t);e.setTag(a.TAGS.CELL_RENDERER,"Monomer"),e.setTag(".use-as-filter","false")}return o}(t,e)}function Wo(t){return to.seqHelper.getSeqMonomers(t)}function Uo(){return new Se(to.seqHelper)}function jo(){const t=r.shell.v,e=t.addViewer("Sequence Similarity Search");t.dockManager.dock(e,"down")}function qo(){return new xe(to.seqHelper)}function zo(){const t=r.shell.v,e=t.addViewer("Sequence Diversity Search");t.dockManager.dock(e,"down")}function Yo(t){const e=(0,$t.me)();1===e.length?t.func.prepare({macromolecules:e[0]}).call(!0):new pe.a7(e,to.seqHelper)}function Ko(t){r.shell.tv.getFiltersGroup({createDefaultFilters:!1}).updateOrAdd({type:"Bio:bioSubstructureFilter",column:t.name,columnName:t.name}),r.shell.tv.grid.scrollToCell(t,0)}async function Zo(t,e,n){const i=to.seqHelper;return gi(t,e,n,ft.IDENTITY,i)}async function Xo(t,e,n){const i=to.seqHelper;return gi(t,e,n,ft.SIMILARITY,i)}async function Jo(){Bn()}async function Qo(){await Vn()}async function tr(){const t=await Tn.getInstance();await t.getViewRoot()}async function er(){return await Vn(!1)}async function nr(t,e){(await(await dn.getInstance()).getFileManager()).getValidLibraryPaths().forEach((e=>{const n=e.endsWith(".json")?e.substring(0,e.length-5):e;t.item(n).onSelected.subscribe((async()=>{const t=await Tn.getInstance();await t.getViewRoot(e,!0),t.resetCurrentRowFollowing()}))}))}function ir(){(0,_e.TE)()}function or(){return new Me._i(to.seqHelper,to.logger)}function rr(){return new Me._i(to.seqHelper,to.logger)}async function sr(){const t=a.TaskBarProgressIndicator.create("WebLogo");try{const t=new URLSearchParams(window.location.search),e=new Qn(t,"webLogoLargeApp"),n=await to.files.readCsv("data/sample_PT_100000x5.csv");await r.data.detectSemanticTypes(n),await e.init(n)}finally{t.close()}}async function ar(){const t=a.TaskBarProgressIndicator.create("WebLogo ...");try{const t=new URLSearchParams(window.location.search),e=new Qn(t,"webLogoAggApp"),n=await to.files.readCsv("samples/FASTA_PT_activity.csv");await r.data.detectSemanticTypes(n),await e.init(n)}finally{t.close()}}async function lr(){const t=a.TaskBarProgressIndicator.create("getRegion ...");try{const t=new URLSearchParams(window.location.search),e=new pi(t,"getRegionApp");await e.init()}finally{t.close()}}async function cr(){const t=a.TaskBarProgressIndicator.create("getRegion ...");try{const t=new URLSearchParams(window.location.search),e=await to.files.readCsv("samples/HELM_empty_vals.csv"),n=new pi(t,"getRegionHelmApp");await n.init({df:e,colName:"HELM"})}finally{t.close()}}function hr(){const t=a.DataFrame.fromColumns((0,Lt.dW)());r.shell.addTableView(t)}function ur(){const t=a.DataFrame.fromColumns([(0,Lt.Hx)(to.seqHelper,gt.Hi.FASTA)]);r.shell.addTableView(t)}function dr(){const t=a.DataFrame.fromColumns([(0,Lt.Hx)(to.seqHelper,gt.Hi.HELM)]);r.shell.addTableView(t)}function pr(t,e){!function(t,e,n){const i=n.getSeqHandler(t.column),o=Object.values(gt.Hi).filter((t=>t!==i.units));e.group("Copy").items(o,(e=>{const i=t.column,o=t.rowIndex,s=n.getSeqHandler(i),a=e===gt.Hi.SEPARATOR?to.properties.defaultSeparator:void 0,l=s.getJoiner({notation:e,separator:a})(s.getSplitted(o));navigator.clipboard?(navigator.clipboard.writeText(l),r.shell.info(`Value of notation '${e}' copied to clipboard`)):r.shell.warning("The clipboard functionality requires a secure origin — either HTTPS or localhost")}))}(t,e,to.seqHelper)}async function mr(){await async function(){const t=await to.files.readCsv("samples/peptides-non-natural.csv");t.name="Similarity and Diversity Demo",t.col("activity").setTag("format","3 significant digits"),t.col("sequence").temp[".mm.cellRenderer.maxMonomerLength"]=4;const e=r.shell.addTableView(t);await t.meta.detectSemanticTypes(),await r.data.detectSemanticTypes(t);const n=e.addViewer("Sequence Similarity Search",{limit:20}),i=e.dockManager.dock(n,a.DOCK_TYPE.RIGHT,null,"Similarity search",.45);(0,$t.Kd)(e.grid,"sequence",500,30);const o=e.addViewer("Sequence Diversity Search",{limit:20});e.dockManager.dock(o,a.DOCK_TYPE.DOWN,i,"Diversity search",.4),r.functions.call("Dendrogram:HierarchicalClustering",{df:r.shell.t,colNameList:["sequence"],distance:"euclidian",linkage:"complete"})}()}async function fr(){await async function(){const t=await r.functions.eval("Bio:SeqSpaceDemo"),e=await r.dapi.projects.find(t.id);await e.open(),r.shell.windows.help.showHelp("/help/datagrok/solutions/domains/bio/bio.md#sequence-space")}()}async function gr(){await async function(){const t=await to.files.readCsv("tests/helm_cyclic_cliffs.csv");t.name="Activity Cliffs Demo",await r.data.detectSemanticTypes(t),await t.meta.detectSemanticTypes();const e=r.shell.addTableView(t);s.setUpdateIndicator(e.root,!0);try{const n=a.Func.find({name:"macromoleculePreprocessingFunction",package:"Bio"})[0],i=await To(t,t.getCol("Sequence"),t.getCol("Activity"),96,c.c.UMAP,ue.Z.MONOMER_CHEMICAL_DISTANCE,n,{},!0);e.dockManager.dock(i,a.DOCK_TYPE.RIGHT,null,"Activity Cliffs",.65),await a.delay(100),mn()(i.root).find("button.scatter_plot_link,cliffs_grid").get()[0].click(),await a.delay(100),e.grid.props.rowHeight=180,e.grid.col("sequence")&&(e.grid.col("sequence").width=300),e.grid.col("structure")&&(e.grid.col("structure").width=300);const o=Array.from(e.viewers).find((t=>t!==e.grid&&t.type===a.VIEWER.GRID));o&&(o.props.rowHeight=40,o.col("seq_diff").width=600,e.dockManager.dock(o,a.DOCK_TYPE.DOWN,null,"Cliffs",.35),e.dockManager.dock(i,a.DOCK_TYPE.RIGHT,null,"Activity Cliffs",.55))}catch(t){!function(t){const e=t instanceof Error?t.message:t.toString(),n=t instanceof Error?t.stack:void 0;r.shell.error(e),to.logger.error(t.message,void 0,n)}(t)}finally{s.setUpdateIndicator(e.root,!1)}r.shell.windows.help.showHelp("/help/datagrok/solutions/domains/bio/bio.md#activity-cliffs")}()}async function yr(){await async function(){const t=await to.files.readCsv("samples/HELM_BI_CYCLIC.csv");t.name="To Atomic Level",await t.meta.detectSemanticTypes(),await r.data.detectSemanticTypes(t);const e=r.shell.addTableView(t),n=t.col("HELM");await Lo(t,n,!0,!1),(0,$t.Kd)(e.grid,"molfile(HELM)",500,300,!0),(0,$t.Kd)(e.grid,"HELM",500,void 0,!0),r.shell.info("Hover over monomers in HELM column to highlight them in molecular structure.",{timeout:10}),r.shell.windows.help.showHelp("/help/datagrok/solutions/domains/bio/bio.md#get-atomic-level-structure")}()}async function br(t){const e=(0,bt.uX)(t),n=JSON.stringify(e);a.Utils.download(`${t.name}.json`,n)}async function vr(t,e){if(!t.trim())return"";try{const n=a.Column.fromList(a.COLUMN_TYPE.STRING,"helm",[t]),i=a.DataFrame.fromColumns([n]),o=await r.functions.call("Bio:detectMacromolecule",{col:n});o&&(n.semType=o);const s=(await eo()).getMonomerLib(),l=to.seqHelper,c=await(0,Pt.j)(),h=(await(0,fi.V)(i,n,e,!1,s,l,c))?.molCol?.get(0);return h??void 0}catch(t){const[e,n]=(0,Ct.AP)(t);throw to.logger.error(e,void 0,n),t}}async function wr(t,e){if(!t.trim())return null;try{const n=a.Column.fromList(a.COLUMN_TYPE.STRING,"seq",[t]),i=a.DataFrame.fromColumns([n]);if(!await r.functions.call("Bio:detectMacromolecule",{col:n}))throw new Error("Macromolecule required");return(await gi(i,n,e,ft.IDENTITY,to.seqHelper)).get(0)}catch(t){const[e,n]=(0,Ct.AP)(t);throw to.logger.error(e,void 0,n),t}}async function Cr(t,e,n){const i=await t.readAsString();await async function(t,e,n){const i=a.TaskBarProgressIndicator.create("detectMacromolecule probe ...");try{let o=0;const s=await r.functions.call("Bio:detectMacromoleculeEnableStore");let l=0;for(let c=0;c<n;++c){const h=a.DataFrame.fromCsv(t),u=e?h.getCol(e):h.columns.byIndex(0);await r.functions.call("Bio:detectMacromolecule",{col:u})!==a.SEMTYPE.MACROMOLECULE&&(++l,console.warn(`Reject reason: ${s.last.rejectReason}`));const d=c/n;d-o>=.1&&(o=d,i.update(100*d,`detectMacromolecule probe ${l}/${c}/${n} ...`),await(0,te.cb)(0))}l>0?r.shell.warning(`detectMacromolecule failed ${l} / ${n}`):r.shell.info(`detectMacromolecule success ${n}`)}finally{i.close()}}(i,e,n)}async function Ar(){return await oo(),to.seqHelper}function Sr(t,e,n){return async function(t,e,n=!0,i){const o=to.seqHelper,r=(await o.getHelmToMolfileConverter(i)).convertToRdKitBeautifiedMolfileColumn(e,n,to.rdKitModule,i);return r.semType=a.SEMTYPE.MOLECULE,r}(0,e,n,to.monomerLib)}function xr(){return to.logger.debug("Bio:test1() function"),{value:"value1"}}},6625:(t,e,n)=>{"use strict";n.d(e,{$:()=>r});class i{value;parentI;parentJ;constructor(){this.value=0,this.parentI=0,this.parentJ=0}}class o{seq1;seq2;score;constructor(t,e,n){this.seq1=t,this.seq2=e,this.score=n}}class r{seq1="";seq2="";gap=1;len1=0;len2=0;step=1;alignGrid=[];scores=[];dpGrid=[];connections={};BLOSUM45=[[5,-2,-1,-2,-1,-1,-1,0,-2,-1,-1,-1,-1,-2,-1,1,0,-2,-2,0,-1,-1,0,-5],[-2,7,0,-1,-3,1,0,-2,0,-3,-2,3,-1,-2,-2,-1,-1,-2,-1,-2,-1,0,-1,-5],[-1,0,6,2,-2,0,0,0,1,-2,-3,0,-2,-2,-2,1,0,-4,-2,-3,4,0,-1,-5],[-2,-1,2,7,-3,0,2,-1,0,-4,-3,0,-3,-4,-1,0,-1,-4,-2,-3,5,1,-1,-5],[-1,-3,-2,-3,12,-3,-3,-3,-3,-3,-2,-3,-2,-2,-4,-1,-1,-5,-3,-1,-2,-3,-2,-5],[-1,1,0,0,-3,6,2,-2,1,-2,-2,1,0,-4,-1,0,-1,-2,-1,-3,0,4,-1,-5],[-1,0,0,2,-3,2,6,-2,0,-3,-2,1,-2,-3,0,0,-1,-3,-2,-3,1,4,-1,-5],[0,-2,0,-1,-3,-2,-2,7,-2,-4,-3,-2,-2,-3,-2,0,-2,-2,-3,-3,-1,-2,-1,-5],[-2,0,1,0,-3,1,0,-2,10,-3,-2,-1,0,-2,-2,-1,-2,-3,2,-3,0,0,-1,-5],[-1,-3,-2,-4,-3,-2,-3,-4,-3,5,2,-3,2,0,-2,-2,-1,-2,0,3,-3,-3,-1,-5],[-1,-2,-3,-3,-2,-2,-2,-3,-2,2,5,-3,2,1,-3,-3,-1,-2,0,1,-3,-2,-1,-5],[-1,3,0,0,-3,1,1,-2,-1,-3,-3,5,-1,-3,-1,-1,-1,-2,-1,-2,0,1,-1,-5],[-1,-1,-2,-3,-2,0,-2,-2,0,2,2,-1,6,0,-2,-2,-1,-2,0,1,-2,-1,-1,-5],[-2,-2,-2,-4,-2,-4,-3,-3,-2,0,1,-3,0,8,-3,-2,-1,1,3,0,-3,-3,-1,-5],[-1,-2,-2,-1,-4,-1,0,-2,-2,-2,-3,-1,-2,-3,9,-1,-1,-3,-3,-3,-2,-1,-1,-5],[1,-1,1,0,-1,0,0,0,-1,-2,-3,-1,-2,-2,-1,4,2,-4,-2,-1,0,0,0,-5],[0,-1,0,-1,-1,-1,-1,-2,-2,-1,-1,-1,-1,-1,-1,2,5,-3,-1,0,0,-1,0,-5],[-2,-2,-4,-4,-5,-2,-3,-2,-3,-2,-2,-2,-2,1,-3,-4,-3,15,3,-3,-4,-2,-2,-5],[-2,-1,-2,-2,-3,-1,-2,-3,2,0,0,-1,0,3,-3,-2,-1,3,8,-1,-2,-2,-1,-5],[0,-2,-3,-3,-1,-3,-3,-3,-3,3,1,-2,1,0,-3,-1,0,-3,-1,5,-3,-3,-1,-5],[-1,-1,4,5,-2,0,1,-1,0,-3,-3,0,-2,-3,-2,0,0,-4,-2,-3,4,2,-1,-5],[-1,0,0,1,-3,4,4,-2,0,-3,-2,1,-1,-3,-1,0,-1,-2,-2,-3,2,4,-1,-5],[0,-1,-1,-1,-2,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,0,0,-2,-1,-1,-1,-1,-1,-5],[-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,1]];BLOSUM50=[[5,-2,-1,-2,-1,-1,-1,0,-2,-1,-2,-1,-1,-3,-1,1,0,-3,-2,0,-2,-1,-1,-5],[-2,7,-1,-2,-4,1,0,-3,0,-4,-3,3,-2,-3,-3,-1,-1,-3,-1,-3,-1,0,-1,-5],[-1,-1,7,2,-2,0,0,0,1,-3,-4,0,-2,-4,-2,1,0,-4,-2,-3,4,0,-1,-5],[-2,-2,2,8,-4,0,2,-1,-1,-4,-4,-1,-4,-5,-1,0,-1,-5,-3,-4,5,1,-1,-5],[-1,-4,-2,-4,13,-3,-3,-3,-3,-2,-2,-3,-2,-2,-4,-1,-1,-5,-3,-1,-3,-3,-2,-5],[-1,1,0,0,-3,7,2,-2,1,-3,-2,2,0,-4,-1,0,-1,-1,-1,-3,0,4,-1,-5],[-1,0,0,2,-3,2,6,-3,0,-4,-3,1,-2,-3,-1,-1,-1,-3,-2,-3,1,5,-1,-5],[0,-3,0,-1,-3,-2,-3,8,-2,-4,-4,-2,-3,-4,-2,0,-2,-3,-3,-4,-1,-2,-2,-5],[-2,0,1,-1,-3,1,0,-2,10,-4,-3,0,-1,-1,-2,-1,-2,-3,2,-4,0,0,-1,-5],[-1,-4,-3,-4,-2,-3,-4,-4,-4,5,2,-3,2,0,-3,-3,-1,-3,-1,4,-4,-3,-1,-5],[-2,-3,-4,-4,-2,-2,-3,-4,-3,2,5,-3,3,1,-4,-3,-1,-2,-1,1,-4,-3,-1,-5],[-1,3,0,-1,-3,2,1,-2,0,-3,-3,6,-2,-4,-1,0,-1,-3,-2,-3,0,1,-1,-5],[-1,-2,-2,-4,-2,0,-2,-3,-1,2,3,-2,7,0,-3,-2,-1,-1,0,1,-3,-1,-1,-5],[-3,-3,-4,-5,-2,-4,-3,-4,-1,0,1,-4,0,8,-4,-3,-2,1,4,-1,-4,-4,-2,-5],[-1,-3,-2,-1,-4,-1,-1,-2,-2,-3,-4,-1,-3,-4,10,-1,-1,-4,-3,-3,-2,-1,-2,-5],[1,-1,1,0,-1,0,-1,0,-1,-3,-3,0,-2,-3,-1,5,2,-4,-2,-2,0,0,-1,-5],[0,-1,0,-1,-1,-1,-1,-2,-2,-1,-1,-1,-1,-2,-1,2,5,-3,-2,0,0,-1,0,-5],[-3,-3,-4,-5,-5,-1,-3,-3,-3,-3,-2,-3,-1,1,-4,-4,-3,15,2,-3,-5,-2,-3,-5],[-2,-1,-2,-3,-3,-1,-2,-3,2,-1,-1,-2,0,4,-3,-2,-2,2,8,-1,-3,-2,-1,-5],[0,-3,-3,-4,-1,-3,-3,-4,-4,4,1,-3,1,-1,-3,-2,0,-3,-1,5,-4,-3,-1,-5],[-2,-1,4,5,-3,0,1,-1,0,-4,-4,0,-3,-4,-2,0,0,-5,-3,-4,5,2,-1,-5],[-1,0,0,1,-3,4,5,-2,0,-3,-3,1,-1,-4,-1,0,-1,-2,-2,-3,2,5,-1,-5],[-1,-1,-1,-1,-2,-1,-1,-2,-1,-1,-1,-1,-1,-2,-2,-1,0,-3,-1,-1,-1,-1,-1,-5],[-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,-5,1]];BLOSUM62=[[4,-1,-2,-2,0,-1,-1,0,-2,-1,-1,-1,-1,-2,-1,1,0,-3,-2,0,-2,-1,0,-4],[-1,5,0,-2,-3,1,0,-2,0,-3,-2,2,-1,-3,-2,-1,-1,-3,-2,-3,-1,0,-1,-4],[-2,0,6,1,-3,0,0,0,1,-3,-3,0,-2,-3,-2,1,0,-4,-2,-3,3,0,-1,-4],[-2,-2,1,6,-3,0,2,-1,-1,-3,-4,-1,-3,-3,-1,0,-1,-4,-3,-3,4,1,-1,-4],[0,-3,-3,-3,9,-3,-4,-3,-3,-1,-1,-3,-1,-2,-3,-1,-1,-2,-2,-1,-3,-3,-2,-4],[-1,1,0,0,-3,5,2,-2,0,-3,-2,1,0,-3,-1,0,-1,-2,-1,-2,0,3,-1,-4],[-1,0,0,2,-4,2,5,-2,0,-3,-3,1,-2,-3,-1,0,-1,-3,-2,-2,1,4,-1,-4],[0,-2,0,-1,-3,-2,-2,6,-2,-4,-4,-2,-3,-3,-2,0,-2,-2,-3,-3,-1,-2,-1,-4],[-2,0,1,-1,-3,0,0,-2,8,-3,-3,-1,-2,-1,-2,-1,-2,-2,2,-3,0,0,-1,-4],[-1,-3,-3,-3,-1,-3,-3,-4,-3,4,2,-3,1,0,-3,-2,-1,-3,-1,3,-3,-3,-1,-4],[-1,-2,-3,-4,-1,-2,-3,-4,-3,2,4,-2,2,0,-3,-2,-1,-2,-1,1,-4,-3,-1,-4],[-1,2,0,-1,-3,1,1,-2,-1,-3,-2,5,-1,-3,-1,0,-1,-3,-2,-2,0,1,-1,-4],[-1,-1,-2,-3,-1,0,-2,-3,-2,1,2,-1,5,0,-2,-1,-1,-1,-1,1,-3,-1,-1,-4],[-2,-3,-3,-3,-2,-3,-3,-3,-1,0,0,-3,0,6,-4,-2,-2,1,3,-1,-3,-3,-1,-4],[-1,-2,-2,-1,-3,-1,-1,-2,-2,-3,-3,-1,-2,-4,7,-1,-1,-4,-3,-2,-2,-1,-2,-4],[1,-1,1,0,-1,0,0,0,-1,-2,-2,0,-1,-2,-1,4,1,-3,-2,-2,0,0,0,-4],[0,-1,0,-1,-1,-1,-1,-2,-2,-1,-1,-1,-1,-2,-1,1,5,-2,-2,0,-1,-1,0,-4],[-3,-3,-4,-4,-2,-2,-3,-2,-2,-3,-2,-3,-1,1,-4,-3,-2,11,2,-3,-4,-3,-2,-4],[-2,-2,-2,-3,-2,-1,-2,-3,2,-1,-1,-2,-1,3,-3,-2,-2,2,7,-1,-3,-2,-1,-4],[0,-3,-3,-3,-1,-2,-2,-3,-3,3,1,-2,1,-1,-2,-2,0,-3,-1,4,-3,-2,-1,-4],[-2,-1,3,4,-3,0,1,-1,0,-3,-4,0,-3,-3,-2,0,-1,-4,-3,-3,4,1,-1,-4],[-1,0,0,1,-3,3,4,-2,0,-3,-3,1,-1,-3,-1,0,-1,-3,-2,-2,1,4,-1,-4],[0,-1,-1,-1,-2,-1,-1,-1,-1,-1,-1,-1,-1,-1,-2,0,0,-2,-1,-1,-1,-1,-1,-4],[-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,-4,1]];BLOSUM80=[[7,-3,-3,-3,-1,-2,-2,0,-3,-3,-3,-1,-2,-4,-1,2,0,-5,-4,-1,-3,-2,-1,-8],[-3,9,-1,-3,-6,1,-1,-4,0,-5,-4,3,-3,-5,-3,-2,-2,-5,-4,-4,-2,0,-2,-8],[-3,-1,9,2,-5,0,-1,-1,1,-6,-6,0,-4,-6,-4,1,0,-7,-4,-5,5,-1,-2,-8],[-3,-3,2,10,-7,-1,2,-3,-2,-7,-7,-2,-6,-6,-3,-1,-2,-8,-6,-6,6,1,-3,-8],[-1,-6,-5,-7,13,-5,-7,-6,-7,-2,-3,-6,-3,-4,-6,-2,-2,-5,-5,-2,-6,-7,-4,-8],[-2,1,0,-1,-5,9,3,-4,1,-5,-4,2,-1,-5,-3,-1,-1,-4,-3,-4,-1,5,-2,-8],[-2,-1,-1,2,-7,3,8,-4,0,-6,-6,1,-4,-6,-2,-1,-2,-6,-5,-4,1,6,-2,-8],[0,-4,-1,-3,-6,-4,-4,9,-4,-7,-7,-3,-5,-6,-5,-1,-3,-6,-6,-6,-2,-4,-3,-8],[-3,0,1,-2,-7,1,0,-4,12,-6,-5,-1,-4,-2,-4,-2,-3,-4,3,-5,-1,0,-2,-8],[-3,-5,-6,-7,-2,-5,-6,-7,-6,7,2,-5,2,-1,-5,-4,-2,-5,-3,4,-6,-6,-2,-8],[-3,-4,-6,-7,-3,-4,-6,-7,-5,2,6,-4,3,0,-5,-4,-3,-4,-2,1,-7,-5,-2,-8],[-1,3,0,-2,-6,2,1,-3,-1,-5,-4,8,-3,-5,-2,-1,-1,-6,-4,-4,-1,1,-2,-8],[-2,-3,-4,-6,-3,-1,-4,-5,-4,2,3,-3,9,0,-4,-3,-1,-3,-3,1,-5,-3,-2,-8],[-4,-5,-6,-6,-4,-5,-6,-6,-2,-1,0,-5,0,10,-6,-4,-4,0,4,-2,-6,-6,-3,-8],[-1,-3,-4,-3,-6,-3,-2,-5,-4,-5,-5,-2,-4,-6,12,-2,-3,-7,-6,-4,-4,-2,-3,-8],[2,-2,1,-1,-2,-1,-1,-1,-2,-4,-4,-1,-3,-4,-2,7,2,-6,-3,-3,0,-1,-1,-8],[0,-2,0,-2,-2,-1,-2,-3,-3,-2,-3,-1,-1,-4,-3,2,8,-5,-3,0,-1,-2,-1,-8],[-5,-5,-7,-8,-5,-4,-6,-6,-4,-5,-4,-6,-3,0,-7,-6,-5,16,3,-5,-8,-5,-5,-8],[-4,-4,-4,-6,-5,-3,-5,-6,3,-3,-2,-4,-3,4,-6,-3,-3,3,11,-3,-5,-4,-3,-8],[-1,-4,-5,-6,-2,-4,-4,-6,-5,4,1,-4,1,-2,-4,-3,0,-5,-3,7,-6,-4,-2,-8],[-3,-2,5,6,-6,-1,1,-2,-1,-6,-7,-1,-5,-6,-4,0,-1,-8,-5,-6,6,0,-3,-8],[-2,0,-1,1,-7,5,6,-4,0,-6,-5,1,-3,-6,-2,-1,-2,-5,-4,-4,0,6,-1,-8],[-1,-2,-2,-3,-4,-2,-2,-3,-2,-2,-2,-2,-2,-3,-3,-1,-1,-5,-3,-2,-3,-1,-2,-8],[-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,1]];BLOSUM90=[[5,-2,-2,-3,-1,-1,-1,0,-2,-2,-2,-1,-2,-3,-1,1,0,-4,-3,-1,-2,-1,-1,-6],[-2,6,-1,-3,-5,1,-1,-3,0,-4,-3,2,-2,-4,-3,-1,-2,-4,-3,-3,-2,0,-2,-6],[-2,-1,7,1,-4,0,-1,-1,0,-4,-4,0,-3,-4,-3,0,0,-5,-3,-4,4,-1,-2,-6],[-3,-3,1,7,-5,-1,1,-2,-2,-5,-5,-1,-4,-5,-3,-1,-2,-6,-4,-5,4,0,-2,-6],[-1,-5,-4,-5,9,-4,-6,-4,-5,-2,-2,-4,-2,-3,-4,-2,-2,-4,-4,-2,-4,-5,-3,-6],[-1,1,0,-1,-4,7,2,-3,1,-4,-3,1,0,-4,-2,-1,-1,-3,-3,-3,-1,4,-1,-6],[-1,-1,-1,1,-6,2,6,-3,-1,-4,-4,0,-3,-5,-2,-1,-1,-5,-4,-3,0,4,-2,-6],[0,-3,-1,-2,-4,-3,-3,6,-3,-5,-5,-2,-4,-5,-3,-1,-3,-4,-5,-5,-2,-3,-2,-6],[-2,0,0,-2,-5,1,-1,-3,8,-4,-4,-1,-3,-2,-3,-2,-2,-3,1,-4,-1,0,-2,-6],[-2,-4,-4,-5,-2,-4,-4,-5,-4,5,1,-4,1,-1,-4,-3,-1,-4,-2,3,-5,-4,-2,-6],[-2,-3,-4,-5,-2,-3,-4,-5,-4,1,5,-3,2,0,-4,-3,-2,-3,-2,0,-5,-4,-2,-6],[-1,2,0,-1,-4,1,0,-2,-1,-4,-3,6,-2,-4,-2,-1,-1,-5,-3,-3,-1,1,-1,-6],[-2,-2,-3,-4,-2,0,-3,-4,-3,1,2,-2,7,-1,-3,-2,-1,-2,-2,0,-4,-2,-1,-6],[-3,-4,-4,-5,-3,-4,-5,-5,-2,-1,0,-4,-1,7,-4,-3,-3,0,3,-2,-4,-4,-2,-6],[-1,-3,-3,-3,-4,-2,-2,-3,-3,-4,-4,-2,-3,-4,8,-2,-2,-5,-4,-3,-3,-2,-2,-6],[1,-1,0,-1,-2,-1,-1,-1,-2,-3,-3,-1,-2,-3,-2,5,1,-4,-3,-2,0,-1,-1,-6],[0,-2,0,-2,-2,-1,-1,-3,-2,-1,-2,-1,-1,-3,-2,1,6,-4,-2,-1,-1,-1,-1,-6],[-4,-4,-5,-6,-4,-3,-5,-4,-3,-4,-3,-5,-2,0,-5,-4,-4,11,2,-3,-6,-4,-3,-6],[-3,-3,-3,-4,-4,-3,-4,-5,1,-2,-2,-3,-2,3,-4,-3,-2,2,8,-3,-4,-3,-2,-6],[-1,-3,-4,-5,-2,-3,-3,-5,-4,3,0,-3,0,-2,-3,-2,-1,-3,-3,5,-4,-3,-2,-6],[-2,-2,4,4,-4,-1,0,-2,-1,-5,-5,-1,-4,-4,-3,0,-1,-6,-4,-4,4,0,-2,-6],[-1,0,-1,0,-5,4,4,-3,0,-4,-4,1,-2,-4,-2,-1,-1,-4,-3,-3,0,4,-1,-6],[-1,-2,-2,-2,-3,-1,-2,-2,-2,-2,-2,-1,-1,-2,-2,-1,-1,-3,-2,-2,-2,-1,-2,-6],[-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,-6,1]];NUCLEOTIDES=[[1,-1,-1,-1],[-1,1,-1,-1],[-1,-1,1,-1],[-1,-1,-1,1]];PAM30=[[6,-7,-4,-3,-6,-4,-2,-2,-7,-5,-6,-7,-5,-8,-2,0,-1,-13,-8,-2,-3,-3,-3,-17],[-7,8,-6,-10,-8,-2,-9,-9,-2,-5,-8,0,-4,-9,-4,-3,-6,-2,-10,-8,-7,-4,-6,-17],[-4,-6,8,2,-11,-3,-2,-3,0,-5,-7,-1,-9,-9,-6,0,-2,-8,-4,-8,6,-3,-3,-17],[-3,-10,2,8,-14,-2,2,-3,-4,-7,-12,-4,-11,-15,-8,-4,-5,-15,-11,-8,6,1,-5,-17],[-6,-8,-11,-14,10,-14,-14,-9,-7,-6,-15,-14,-13,-13,-8,-3,-8,-15,-4,-6,-12,-14,-9,-17],[-4,-2,-3,-2,-14,8,1,-7,1,-8,-5,-3,-4,-13,-3,-5,-5,-13,-12,-7,-3,6,-5,-17],[-2,-9,-2,2,-14,1,8,-4,-5,-5,-9,-4,-7,-14,-5,-4,-6,-17,-8,-6,1,6,-5,-17],[-2,-9,-3,-3,-9,-7,-4,6,-9,-11,-10,-7,-8,-9,-6,-2,-6,-15,-14,-5,-3,-5,-5,-17],[-7,-2,0,-4,-7,1,-5,-9,9,-9,-6,-6,-10,-6,-4,-6,-7,-7,-3,-6,-1,-1,-5,-17],[-5,-5,-5,-7,-6,-8,-5,-11,-9,8,-1,-6,-1,-2,-8,-7,-2,-14,-6,2,-6,-6,-5,-17],[-6,-8,-7,-12,-15,-5,-9,-10,-6,-1,7,-8,1,-3,-7,-8,-7,-6,-7,-2,-9,-7,-6,-17],[-7,0,-1,-4,-14,-3,-4,-7,-6,-6,-8,7,-2,-14,-6,-4,-3,-12,-9,-9,-2,-4,-5,-17],[-5,-4,-9,-11,-13,-4,-7,-8,-10,-1,1,-2,11,-4,-8,-5,-4,-13,-11,-1,-10,-5,-5,-17],[-8,-9,-9,-15,-13,-13,-14,-9,-6,-2,-3,-14,-4,9,-10,-6,-9,-4,2,-8,-10,-13,-8,-17],[-2,-4,-6,-8,-8,-3,-5,-6,-4,-8,-7,-6,-8,-10,8,-2,-4,-14,-13,-6,-7,-4,-5,-17],[0,-3,0,-4,-3,-5,-4,-2,-6,-7,-8,-4,-5,-6,-2,6,0,-5,-7,-6,-1,-5,-3,-17],[-1,-6,-2,-5,-8,-5,-6,-6,-7,-2,-7,-3,-4,-9,-4,0,7,-13,-6,-3,-3,-6,-4,-17],[-13,-2,-8,-15,-15,-13,-17,-15,-7,-14,-6,-12,-13,-4,-14,-5,-13,13,-5,-15,-10,-14,-11,-17],[-8,-10,-4,-11,-4,-12,-8,-14,-3,-6,-7,-9,-11,2,-13,-7,-6,-5,10,-7,-6,-9,-7,-17],[-2,-8,-8,-8,-6,-7,-6,-5,-6,2,-2,-9,-1,-8,-6,-6,-3,-15,-7,7,-8,-6,-5,-17],[-3,-7,6,6,-12,-3,1,-3,-1,-6,-9,-2,-10,-10,-7,-1,-3,-10,-6,-8,6,0,-5,-17],[-3,-4,-3,1,-14,6,6,-5,-1,-6,-7,-4,-5,-13,-4,-5,-6,-14,-9,-6,0,6,-5,-17],[-3,-6,-3,-5,-9,-5,-5,-5,-5,-5,-6,-5,-5,-8,-5,-3,-4,-11,-7,-5,-5,-5,-5,-17],[-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,-17,1]];PAM70=[[5,-4,-2,-1,-4,-2,-1,0,-4,-2,-4,-4,-3,-6,0,1,1,-9,-5,-1,-1,-1,-2,-11],[-4,8,-3,-6,-5,0,-5,-6,0,-3,-6,2,-2,-7,-2,-1,-4,0,-7,-5,-4,-2,-3,-11],[-2,-3,6,3,-7,-1,0,-1,1,-3,-5,0,-5,-6,-3,1,0,-6,-3,-5,5,-1,-2,-11],[-1,-6,3,6,-9,0,3,-1,-1,-5,-8,-2,-7,-10,-4,-1,-2,-10,-7,-5,5,2,-3,-11],[-4,-5,-7,-9,9,-9,-9,-6,-5,-4,-10,-9,-9,-8,-5,-1,-5,-11,-2,-4,-8,-9,-6,-11],[-2,0,-1,0,-9,7,2,-4,2,-5,-3,-1,-2,-9,-1,-3,-3,-8,-8,-4,-1,5,-2,-11],[-1,-5,0,3,-9,2,6,-2,-2,-4,-6,-2,-4,-9,-3,-2,-3,-11,-6,-4,2,5,-3,-11],[0,-6,-1,-1,-6,-4,-2,6,-6,-6,-7,-5,-6,-7,-3,0,-3,-10,-9,-3,-1,-3,-3,-11],[-4,0,1,-1,-5,2,-2,-6,8,-6,-4,-3,-6,-4,-2,-3,-4,-5,-1,-4,0,1,-3,-11],[-2,-3,-3,-5,-4,-5,-4,-6,-6,7,1,-4,1,0,-5,-4,-1,-9,-4,3,-4,-4,-3,-11],[-4,-6,-5,-8,-10,-3,-6,-7,-4,1,6,-5,2,-1,-5,-6,-4,-4,-4,0,-6,-4,-4,-11],[-4,2,0,-2,-9,-1,-2,-5,-3,-4,-5,6,0,-9,-4,-2,-1,-7,-7,-6,-1,-2,-3,-11],[-3,-2,-5,-7,-9,-2,-4,-6,-6,1,2,0,10,-2,-5,-3,-2,-8,-7,0,-6,-3,-3,-11],[-6,-7,-6,-10,-8,-9,-9,-7,-4,0,-1,-9,-2,8,-7,-4,-6,-2,4,-5,-7,-9,-5,-11],[0,-2,-3,-4,-5,-1,-3,-3,-2,-5,-5,-4,-5,-7,7,0,-2,-9,-9,-3,-4,-2,-3,-11],[1,-1,1,-1,-1,-3,-2,0,-3,-4,-6,-2,-3,-4,0,5,2,-3,-5,-3,0,-2,-1,-11],[1,-4,0,-2,-5,-3,-3,-3,-4,-1,-4,-1,-2,-6,-2,2,6,-8,-4,-1,-1,-3,-2,-11],[-9,0,-6,-10,-11,-8,-11,-10,-5,-9,-4,-7,-8,-2,-9,-3,-8,13,-3,-10,-7,-10,-7,-11],[-5,-7,-3,-7,-2,-8,-6,-9,-1,-4,-4,-7,-7,4,-9,-5,-4,-3,9,-5,-4,-7,-5,-11],[-1,-5,-5,-5,-4,-4,-4,-3,-4,3,0,-6,0,-5,-3,-3,-1,-10,-5,6,-5,-4,-2,-11],[-1,-4,5,5,-8,-1,2,-1,0,-4,-6,-1,-6,-7,-4,0,-1,-7,-4,-5,5,1,-2,-11],[-1,-2,-1,2,-9,5,5,-3,1,-4,-4,-2,-3,-9,-2,-2,-3,-10,-7,-4,1,5,-3,-11],[-2,-3,-2,-3,-6,-2,-3,-3,-3,-3,-4,-3,-3,-5,-3,-1,-2,-7,-5,-2,-2,-3,-3,-11],[-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,-11,1]];PAM250=[[2,-2,0,0,-2,0,0,1,-1,-1,-2,-1,-1,-3,1,1,1,-6,-3,0,0,0,0,-8],[-2,6,0,-1,-4,1,-1,-3,2,-2,-3,3,0,-4,0,0,-1,2,-4,-2,-1,0,-1,-8],[0,0,2,2,-4,1,1,0,2,-2,-3,1,-2,-3,0,1,0,-4,-2,-2,2,1,0,-8],[0,-1,2,4,-5,2,3,1,1,-2,-4,0,-3,-6,-1,0,0,-7,-4,-2,3,3,-1,-8],[-2,-4,-4,-5,12,-5,-5,-3,-3,-2,-6,-5,-5,-4,-3,0,-2,-8,0,-2,-4,-5,-3,-8],[0,1,1,2,-5,4,2,-1,3,-2,-2,1,-1,-5,0,-1,-1,-5,-4,-2,1,3,-1,-8],[0,-1,1,3,-5,2,4,0,1,-2,-3,0,-2,-5,-1,0,0,-7,-4,-2,3,3,-1,-8],[1,-3,0,1,-3,-1,0,5,-2,-3,-4,-2,-3,-5,0,1,0,-7,-5,-1,0,0,-1,-8],[-1,2,2,1,-3,3,1,-2,6,-2,-2,0,-2,-2,0,-1,-1,-3,0,-2,1,2,-1,-8],[-1,-2,-2,-2,-2,-2,-2,-3,-2,5,2,-2,2,1,-2,-1,0,-5,-1,4,-2,-2,-1,-8],[-2,-3,-3,-4,-6,-2,-3,-4,-2,2,6,-3,4,2,-3,-3,-2,-2,-1,2,-3,-3,-1,-8],[-1,3,1,0,-5,1,0,-2,0,-2,-3,5,0,-5,-1,0,0,-3,-4,-2,1,0,-1,-8],[-1,0,-2,-3,-5,-1,-2,-3,-2,2,4,0,6,0,-2,-2,-1,-4,-2,2,-2,-2,-1,-8],[-3,-4,-3,-6,-4,-5,-5,-5,-2,1,2,-5,0,9,-5,-3,-3,0,7,-1,-4,-5,-2,-8],[1,0,0,-1,-3,0,-1,0,0,-2,-3,-1,-2,-5,6,1,0,-6,-5,-1,-1,0,-1,-8],[1,0,1,0,0,-1,0,1,-1,-1,-3,0,-2,-3,1,2,1,-2,-3,-1,0,0,0,-8],[1,-1,0,0,-2,-1,0,0,-1,0,-2,0,-1,-3,0,1,3,-5,-3,0,0,-1,0,-8],[-6,2,-4,-7,-8,-5,-7,-7,-3,-5,-2,-3,-4,0,-6,-2,-5,17,0,-6,-5,-6,-4,-8],[-3,-4,-2,-4,0,-4,-4,-5,0,-1,-1,-4,-2,7,-5,-3,-3,0,10,-2,-3,-4,-2,-8],[0,-2,-2,-2,-2,-2,-2,-1,-2,4,2,-2,2,-1,-1,-1,0,-6,-2,4,-2,-2,-1,-8],[0,-1,2,3,-4,1,3,0,1,-2,-3,1,-2,-4,-1,0,0,-5,-3,-2,3,2,-1,-8],[0,0,1,3,-5,3,3,0,2,-2,-3,0,-2,-5,0,0,-1,-6,-4,-2,2,3,-1,-8],[0,-1,0,-1,-3,-1,-1,-1,-1,-1,-1,-1,-1,-2,-1,0,0,-4,-2,-1,-1,-1,-1,-8],[-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,-8,1]];SCHNEIDER=[[11.6,-2.7,9.7,-1.7,-2.7,-6.4,-3.9,-5.6,5.1,-5,3.6,-4.2,-6.3,-13,-7.1,-11.5,.4,-6,-1.9,-5.3,-8.5,-11.2,-8.9,-10.8,2.1,0,1.4,.2,-10.2,-13.5,-13,-12.5,-2.6,-8.5,-5,-8.1,-6.3,-9.9,-7.5,-9,-7.1,-10.2,-8.2,-9.2,-8.2,-12.5,-11.1,-11.4,-50,-14.8,-50,-13.8,-7.3,-10.1,-8.4,-9.1,-50,-13,-13.5,-12.4,-10.7,-18.1,-11.8,-17.2],[-2.7,13,-3.3,10.9,-3.5,-.4,-3.3,-1.8,-5.4,4.6,-5.5,3,-10.2,-7.9,-9.9,-9.6,-5,.5,-5.5,-1,-10.3,-8.1,-9.4,-9.6,-8.1,-5,-7.3,-6.3,-13.4,-11.3,-14.4,-12.9,-6.3,.8,-6.4,-1.1,-7.4,-5,-6.2,-6.5,-5.6,-1.6,-4.7,-3,-10.8,-8.7,-11.9,-10,-50,-6.2,-50,-7.5,-6.3,-4.3,-6.2,-5.4,-50,-7,-16.3,-8.2,-13.2,-12.3,-13.1,-13.3],[9.7,-3.3,11.6,-2.8,-4.5,-6.7,-3.1,-6.9,3.3,-5.5,4.8,-5.1,-8.9,-13.2,-5.7,-12.6,-1.5,-6.1,-.6,-6.1,-10,-11.8,-8.6,-11.9,1.2,.5,2.2,.1,-11.8,-14,-11.9,-13.4,-4.9,-9.1,-3.4,-8.9,-8,-10,-7.2,-10,-9.1,-10.2,-7.1,-9.9,-10.1,-13,-10.6,-12.7,-50,-14.9,-50,-14.4,-8.9,-10.8,-8.9,-10.4,-50,-13.1,-11.8,-13,-12.4,-19.4,-11.5,-17.8],[-1.7,10.9,-2.8,12.9,-2.7,-2.2,-2.8,.2,-4.8,2.9,-5.2,5.2,-9.1,-9.5,-9,-7,-4,-1,-5,1,-9,-8.8,-8.9,-7.7,-7,-6.8,-7.1,-4.3,-12.4,-12.9,-13.9,-10,-4.9,-.7,-5.6,1.4,-6,-6.5,-6.2,-4.8,-5.1,-3.2,-5,-1.2,-9.8,-9.9,-11.3,-8.2,-50,-7.6,-50,-5.1,-5.5,-5.8,-5.9,-4.2,-50,-8.3,-15.5,-5.9,-11.6,-14.2,-12,-11.6],[-2.7,-3.5,-4.5,-2.7,11.7,9,10.6,9.6,-3.2,-.7,-5.1,-.4,.7,-4.6,-.4,-3.6,-4.8,-8.9,-6.5,-7.8,-1.4,-4.1,-2.9,-3.3,-8,-9.1,-8,-8.2,-6,-9.3,-7.7,-8.5,-6.4,-10.1,-7.5,-8.6,2.8,-.7,.9,.1,-5.9,-7.3,-6.5,-6.5,-.4,-3.9,-2.6,-3.1,-50,-14.6,-50,-12.6,2.9,.1,1.8,1,-50,-9.2,-13.6,-7.7,-4.8,-12.2,-6.2,-11],[-6.4,-.4,-6.7,-2.2,9,12.3,9.8,9.6,-7.1,2.4,-7.2,.3,-2.9,-1.2,-3,-3.3,-7.6,-6.7,-8.1,-7.9,-4.9,-1.9,-4.5,-3.8,-9.5,-7.8,-9.3,-8.9,-9.4,-7.1,-9,-9,-9.4,-7.5,-9.3,-9.2,-.7,2.6,.2,-.1,-8,-4.6,-7.7,-6.1,-3.6,-1,-4.1,-3.1,-50,-11.6,-50,-11.6,.2,2.3,.4,.5,-50,-6.5,-15.3,-7.8,-8.4,-9.5,-8.3,-11.1],[-3.9,-3.3,-3.1,-2.8,10.6,9.8,12.2,9.8,-4.9,.1,-3.6,-.2,-1.7,-4.1,.9,-3.5,-5.9,-8.9,-5.6,-8.5,-3.9,-3.9,-2.2,-4.5,-7.3,-7.5,-6.4,-8.5,-7.1,-8.2,-6.7,-7.8,-7.9,-9.1,-7.1,-9.4,.9,-.2,2.5,-.3,-6.9,-6.5,-5.5,-6.8,-1.7,-3.4,-1.7,-2.8,-50,-13,-50,-11.5,1.5,.7,2.7,.6,-50,-8.9,-12.1,-7.4,-6.1,-11.5,-5.4,-10.4],[-5.6,-1.8,-6.9,.2,9.6,9.6,9.8,11.6,-6.6,.9,-7.2,2.5,-2.3,-3.4,-2.3,-.6,-6.5,-8.2,-8,-6.3,-3.7,-3.5,-3.9,-1.6,-9.9,-8.9,-9.6,-7,-8.6,-8.9,-8.8,-6.8,-8.6,-8.2,-8.8,-6.8,.3,.1,.2,2.4,-7.4,-6.2,-6.9,-4.4,-2.9,-2.9,-3.5,-.9,-50,-12.2,-50,-10.1,1.2,.6,1.2,2.4,-50,-7.6,-16.1,-5.8,-7.2,-10.8,-7.4,-9],[5.1,-5.4,3.3,-4.8,-3.2,-7.1,-4.9,-6.6,13.3,-2.8,11.2,-1.9,-5.7,-12.5,-7.2,-11.6,-.7,-4.8,-3.1,-4.3,-10,-11.6,-8.8,-11.7,10.5,7.7,9.1,8.5,-9.8,-12.7,-11.7,-11.8,-6.3,-11.4,-8.8,-11,-7.5,-10.3,-8.3,-9.9,-1.9,-6.7,-4.1,-6.4,-7.9,-12.5,-11.4,-11.7,-50,-14,-50,-13.2,-8.5,-10.4,-9.1,-9.6,-50,-9.8,-7.7,-8.8,-10.3,-17.9,-11.8,-16],[-5,4.6,-5.5,2.9,-.7,2.4,.1,.9,-2.8,12.8,-2.6,11,-8.4,-6.3,-8.3,-7.7,-6.1,-2.9,-6.5,-4.2,-8.5,-5.9,-7.5,-7.7,-5.5,-2.4,-5.5,-4.1,-12.9,-10.3,-12.7,-11.3,-7.4,-3.1,-7.4,-4.9,-4.4,-1.8,-3.5,-3.5,-1.6,3,-.8,.9,-8.4,-6.3,-9.6,-7.3,-50,-9,-50,-9.7,-2.3,-.2,-1.2,-1.5,-50,-.7,-13.3,-2,-11.8,-11.9,-12.3,-12.7],[3.6,-5.5,4.8,-5.2,-5.1,-7.2,-3.6,-7.2,11.2,-2.6,13.4,-2.1,-7.7,-12.5,-5.3,-11.9,-2.2,-4.4,-1.9,-4.8,-10.2,-11.5,-8.1,-12,9.3,8.2,10,8,-10.8,-11.9,-10.7,-12.4,-8.2,-11.8,-6.9,-11.5,-8.4,-9.9,-7.1,-10.6,-4.7,-6.8,-1.2,-7,-9.8,-11.6,-9.6,-12.1,-50,-14.1,-50,-12.7,-10,-10.8,-8.8,-10.5,-50,-9.2,-4.2,-9.3,-11,-18.2,-11.1,-16.1],[-4.2,3,-5.1,5.2,-.4,.3,-.2,2.5,-1.9,11,-2.1,13.2,-7.6,-8.5,-8,-5.3,-5.6,-4.5,-6.8,-2.4,-7.8,-7.9,-7.9,-6.2,-5.7,-5.1,-5.4,-2.1,-12.4,-12.3,-13.1,-10.1,-6.6,-4.4,-6.9,-2.6,-3.6,-3.8,-3.7,-2,-1.4,.8,-.9,3,-8.2,-8.1,-9.2,-5.8,-50,-10.1,-50,-7.4,-1.7,-2,-1.5,-.5,-50,-2.1,-12.6,-.4,-11.6,-13.9,-11.4,-11.1],[-6.3,-10.2,-8.9,-9.1,.7,-2.9,-1.7,-2.3,-5.7,-8.4,-7.7,-7.6,13.2,9.6,3.5,9.7,-8.7,-12.4,-10.7,-10.7,-7.8,-10.2,-8.8,-9.6,-9.5,-11.9,-10.9,-10.5,2.3,-.4,-.2,-.3,-9.7,-15.5,-11.4,-13.7,-3,-6.4,-4.1,-5.4,-9.6,-11.9,-10.5,-11.8,6.2,3.3,3.7,3.6,-50,-13.6,-50,-11.9,-5.6,-8.8,-7.2,-8.9,-50,-12.4,-14.1,-11.6,2.8,-6.4,.5,-5.2],[-13,-7.9,-13.2,-9.5,-4.6,-1.2,-4.1,-3.4,-12.5,-6.3,-12.5,-8.5,9.6,12.7,.2,10.5,-12.4,-11.6,-13.2,-12,-12.4,-10.1,-11.6,-12,-15.1,-13.1,-14.3,-13.4,-1.4,1.4,-1.6,-.5,-14.9,-14.3,-15.2,-16.8,-7.7,-4.7,-6.3,-6.6,-14.6,-10.8,-12.8,-13,2.3,6,2.5,3.6,-50,-11.2,-50,-11.9,-10.5,-9.2,-10.5,-10.5,-50,-10.3,-16.2,-11.3,-1.7,-3.7,-2.5,-5.4],[-7.1,-9.9,-5.7,-9,-.4,-3,.9,-2.3,-7.2,-8.3,-5.3,-8,3.5,.2,14.3,1,-7.3,-11.2,-6.9,-9.7,-8.5,-10.2,-7.7,-9.8,-10,-10.4,-8.4,-10.2,1,-.6,1.7,-.5,-11.1,-14.8,-9.7,-14.5,-3.7,-5.8,-3.1,-5.6,-10.4,-11.5,-8.2,-11.1,.6,-1.6,1.6,-1.1,-50,-12.4,-50,-11.5,-5.5,-8,-4.9,-7.2,-50,-12.4,-10.3,-11.6,.7,-6.8,2.4,-6],[-11.5,-9.6,-12.6,-7,-3.6,-3.3,-3.5,-.6,-11.6,-7.7,-11.9,-5.3,9.7,10.5,1,12.6,-12,-12.2,-12.5,-9.7,-11.1,-11.2,-11.9,-9.4,-12.9,-14.3,-14,-11.9,-1,-.4,-1.6,1.2,-13.9,-15.4,-13.7,-12.6,-6.2,-6.7,-6.3,-4.4,-13,-12.2,-13,-10.4,2.9,3.8,2.5,5.8,-50,-12.5,-50,-10.2,-9.6,-9.7,-9.6,-8.3,-50,-11.6,-15.4,-9.4,-1.1,-5.4,-1.6,-3.3],[.4,-5,-1.5,-4,-4.8,-7.6,-5.9,-6.5,-.7,-6.1,-2.2,-5.6,-8.7,-12.4,-7.3,-12,12.8,2.3,10.2,3,0,-3.4,-.7,-3.2,2.5,-.8,.9,.2,-3,-7.2,-5.7,-6.1,-.2,-6.6,-1.8,-6,-5.3,-8.2,-5.7,-7.6,-6.7,-9.6,-7.5,-9.3,-7.1,-10.5,-9.6,-9.4,-50,-8.1,-50,-7.2,-4.3,-6.8,-5.7,-6.3,-50,-9.5,-9.6,-8.9,-6.2,-12.8,-6.8,-11.8],[-6,.5,-6.1,-1,-8.9,-6.7,-8.9,-8.2,-4.8,-2.9,-4.4,-4.5,-12.4,-11.6,-11.2,-12.2,2.3,14.6,1.9,12.9,-5.5,-2.6,-4.1,-4.7,-1.2,3,-1.1,1.6,-8,-4.7,-8.7,-6,-8.2,-4.7,-7.8,-6.7,-10,-8.3,-8.9,-9.9,-10.8,-7.1,-10,-9.2,-11.6,-10.1,-12.3,-11.9,-50,2.2,-50,.9,-7.9,-5.9,-7.4,-6.9,-50,-4.6,-11.6,-5.6,-9.7,-5.9,-9.9,-7.3],[-1.9,-5.5,-.6,-5,-6.5,-8.1,-5.6,-8,-3.1,-6.5,-1.9,-6.8,-10.7,-13.2,-6.9,-12.5,10.2,1.9,11.9,2.1,-2.3,-4.1,-.5,-4.6,-.1,-.9,2.4,-.8,-5.1,-6.9,-4.8,-6.7,-2.3,-7.1,-.8,-7.2,-7.2,-8,-5.6,-8.5,-9.4,-9.7,-7.2,-9.8,-9.2,-11.1,-9.5,-10.7,-50,-8.7,-50,-8.6,-6.1,-7.5,-5.5,-7.7,-50,-10.4,-7.7,-10,-7.3,-13.6,-6.4,-13.3],[-5.3,-1,-6.1,1,-7.8,-7.9,-8.5,-6.3,-4.3,-4.2,-4.8,-2.4,-10.7,-12,-9.7,-9.7,3,12.9,2.1,14.7,-4.9,-3.8,-4,-2.4,-1,.8,-1.3,3.4,-7.6,-5.7,-8.1,-3.5,-6.8,-5.8,-7.2,-4.2,-8.9,-10.2,-8.4,-8.2,-9.9,-8.4,-9.7,-6.4,-11.1,-11.1,-11.8,-10,-50,.4,-50,2.6,-7.2,-7,-7.4,-5.1,-50,-5.7,-9.8,-3.2,-8.4,-7.4,-8.9,-5.9],[-8.5,-10.3,-10,-9,-1.4,-4.9,-3.9,-3.7,-10,-8.5,-10.2,-7.8,-7.8,-12.4,-8.5,-11.1,0,-5.5,-2.3,-4.9,12.6,10,11.1,10.5,-6,-8.3,-6.9,-7.5,-2.2,-7.4,-5.3,-5.9,-8.9,-12.5,-9.4,-11.6,-.7,-3.9,-2.3,-3,-9.1,-9.8,-9.2,-9.5,-5.6,-9,-8,-8.5,-50,-15.3,-50,-14.1,2.3,-1.4,.3,-.5,-50,-13.6,-14.3,-11.5,-5.3,-13.7,-6.1,-12.7],[-11.2,-8.1,-11.8,-8.8,-4.1,-1.9,-3.9,-3.5,-11.6,-5.9,-11.5,-7.9,-10.2,-10.1,-10.2,-11.2,-3.4,-2.6,-4.1,-3.8,10,13.1,10.7,10.6,-8.1,-5.2,-8,-6.7,-6.1,-3.7,-7.5,-5.6,-11.1,-10.3,-10.6,-11.9,-3.2,-1,-2.2,-2.8,-10.5,-8.1,-9.4,-9.5,-8.3,-6.9,-9.4,-8.8,-50,-11.3,-50,-12.8,-.6,2.2,-.3,.1,-50,-10.1,-17.5,-11.1,-8.6,-9.9,-8.6,-11.9],[-8.9,-9.4,-8.6,-8.9,-2.9,-4.5,-2.2,-3.9,-8.8,-7.5,-8.1,-7.9,-8.8,-11.6,-7.7,-11.9,-.7,-4.1,-.5,-4,11.1,10.7,13.2,10.4,-5.7,-5.8,-3.5,-6.1,-3.6,-6.5,-3.3,-5.5,-9.4,-11,-8.7,-11.2,-1.8,-2.7,.7,-3,-9.1,-8.2,-7.3,-9.4,-7.2,-8.2,-7.2,-8.2,-50,-13.2,-50,-13.3,.5,-.9,1.8,-.6,-50,-11.4,-11.1,-10.5,-6.1,-12.9,-5,-11.9],[-10.8,-9.6,-11.9,-7.7,-3.3,-3.8,-4.5,-1.6,-11.7,-7.7,-12,-6.2,-9.6,-12,-9.8,-9.4,-3.2,-4.7,-4.6,-2.4,10.5,10.6,10.4,12.6,-8.2,-7.9,-9,-4.7,-6.1,-6,-7.5,-2.9,-10.9,-12.2,-11.2,-10.9,-2.4,-2.9,-2.7,-.9,-10.4,-9.7,-10.2,-8,-8.4,-9.1,-9.3,-6.5,-50,-13.3,-50,-11,-0,-.4,-.4,2.3,-50,-10.9,-17.2,-8.3,-8.3,-12.7,-7.8,-9.3],[2.1,-8.1,1.2,-7,-8,-9.5,-7.3,-9.9,10.5,-5.5,9.3,-5.7,-9.5,-15.1,-10,-12.9,2.5,-1.2,-.1,-1,-6,-8.1,-5.7,-8.2,13.8,11.3,11.8,12.1,-6,-9.1,-9,-9.5,-8.9,-13.4,-10,-13.1,-9.9,-11.7,-9.8,-12.8,-5.9,-9.4,-6.5,-8.1,-10.7,-14,-13.3,-13.9,-50,-11.9,-50,-9.7,-8.9,-10.8,-9,-11.1,-50,-6.5,-5.3,-6.3,-10.5,-16.2,-10.4,-15.2],[0,-5,.5,-6.8,-9.1,-7.8,-7.5,-8.9,7.7,-2.4,8.2,-5.1,-11.9,-13.1,-10.4,-14.3,-.8,3,-.9,.8,-8.3,-5.2,-5.8,-7.9,11.3,15,11.2,12.8,-9.7,-5.3,-9.2,-7.8,-11.7,-10.6,-10.1,-12.2,-11.7,-8.8,-8.9,-11.8,-9.3,-5,-8,-8.2,-13.6,-11.4,-12.8,-13,-50,-7.2,-50,-8.4,-11,-7.7,-8.7,-10.2,-50,-1.5,-7.1,-4.9,-11.2,-11.6,-11.6,-15],[1.4,-7.3,2.2,-7.1,-8,-9.3,-6.4,-9.6,9.1,-5.5,10,-5.4,-10.9,-14.3,-8.4,-14,.9,-1.1,2.4,-1.3,-6.9,-8,-3.5,-9,11.8,11.2,13.4,11.4,-7.3,-8.8,-6.5,-8.5,-10,-12.5,-7.8,-12.5,-9.6,-11,-7.1,-10.7,-7.9,-8,-4.3,-9.4,-11.4,-12.3,-10.9,-12.9,-50,-11.8,-50,-11.2,-9.4,-9.8,-7.3,-10.5,-50,-6.2,-2.2,-6.7,-9.8,-15.2,-8.5,-14.9],[.2,-6.3,.1,-4.3,-8.2,-8.9,-8.5,-7,8.5,-4.1,8,-2.1,-10.5,-13.4,-10.2,-11.9,.2,1.6,-.8,3.4,-7.5,-6.7,-6.1,-4.7,12.1,12.8,11.4,14.7,-8.7,-7.4,-9.4,-5.3,-9.9,-11.8,-10.5,-10.3,-9.9,-10.1,-9.3,-9.3,-8.1,-7.2,-8,-5.2,-12,-12.1,-12.6,-10.9,-50,-7.9,-50,-5.3,-9.3,-8.8,-8.9,-7,-50,-3.6,-7.1,-1.2,-10.2,-12.7,-9.9,-11],[-10.2,-13.4,-11.8,-12.4,-6,-9.4,-7.1,-8.6,-9.8,-12.9,-10.8,-12.4,2.3,-1.4,1,-1,-3,-8,-5.1,-7.6,-2.2,-6.1,-3.6,-6.1,-6,-9.7,-7.3,-8.7,11.2,7.9,8.9,8.1,-12.1,-17.4,-13.2,-16.8,-6.3,-9.5,-7.5,-8.8,-12.7,-15.2,-13.1,-14.2,0,-3.1,-1.8,-3.1,-50,-10.7,-50,-9.3,-4.6,-8.9,-5.9,-8.3,-50,-12.8,-9.6,-10.6,9.5,-3.2,8.2,-2.8],[-13.5,-11.3,-14,-12.9,-9.3,-7.1,-8.2,-8.9,-12.7,-10.3,-11.9,-12.3,-.4,1.4,-.6,-.4,-7.2,-4.7,-6.9,-5.7,-7.4,-3.7,-6.5,-6,-9.1,-5.3,-8.8,-7.4,7.9,11.9,7.8,9.3,-15.2,-15.1,-14.6,-17.2,-9.7,-7.3,-8.2,-9.2,-15,-12.8,-14.1,-14.9,-2.8,.2,-2.9,-2.3,-50,-7.4,-50,-8.7,-9.4,-7.3,-9.4,-9.4,-50,-8,-11.9,-9.7,6.5,.5,6.4,-1.8],[-13,-14.4,-11.9,-13.9,-7.7,-9,-6.7,-8.8,-11.7,-12.7,-10.7,-13.1,-.2,-1.6,1.7,-1.6,-5.7,-8.7,-4.8,-8.1,-5.3,-7.5,-3.3,-7.5,-9,-9.2,-6.5,-9.4,8.9,7.8,10.1,7.8,-14.3,-17.7,-13,-17.8,-8,-9.4,-6.2,-9.2,-15.1,-14.9,-12.2,-14.9,-1.8,-3.2,-.8,-3.2,-50,-10.8,-50,-9.9,-7.3,-9.6,-6.4,-9.4,-50,-12.3,-8.7,-11.3,7.6,-3.3,8.7,-2.9],[-12.5,-12.9,-13.4,-10,-8.5,-9,-7.8,-6.8,-11.8,-11.3,-12.4,-10.1,-.3,-.5,-.5,1.2,-6.1,-6,-6.7,-3.5,-5.9,-5.6,-5.5,-2.9,-9.5,-7.8,-8.5,-5.3,8.1,9.3,7.8,11.8,-14.4,-15.7,-14.5,-14.6,-8.4,-8.7,-7.9,-7.1,-14.3,-13.8,-13.8,-12.3,-2.4,-2.2,-2.9,-.2,-50,-8.9,-50,-7.1,-8.1,-9.1,-8.7,-6.6,-50,-9.7,-11.4,-8,6.8,-1.8,6.9,.4],[-2.6,-6.3,-4.9,-4.9,-6.4,-9.4,-7.9,-8.6,-6.3,-7.4,-8.2,-6.6,-9.7,-14.9,-11.1,-13.9,-.2,-8.2,-2.3,-6.8,-8.9,-11.1,-9.4,-10.9,-8.9,-11.7,-10,-9.9,-12.1,-15.2,-14.3,-14.4,11.1,2.9,9.2,3.5,-3,-7,-4.3,-6.2,-2.2,-6.6,-3.7,-5.7,-6,-10.4,-8.6,-9.5,-50,-15.5,-50,-13.9,-7.8,-10.5,-8.7,-9.6,-50,-16.5,-17.1,-14.8,-12.1,-18.9,-12.4,-17.4],[-8.5,.8,-9.1,-.7,-10.1,-7.5,-9.1,-8.2,-11.4,-3.1,-11.8,-4.4,-15.5,-14.3,-14.8,-15.4,-6.6,-4.7,-7.1,-5.8,-12.5,-10.3,-11,-12.2,-13.4,-10.6,-12.5,-11.8,-17.4,-15.1,-17.7,-15.7,2.9,12.5,3.1,10.3,-7.7,-5.2,-6.2,-7.3,-5.4,-1.7,-5.4,-3.7,-11.6,-9.1,-13,-10.8,-50,-10.3,-50,-11.2,-9.8,-8.3,-9.1,-9.7,-50,-12.7,-20.6,-13.1,-16,-16.6,-17,-18.4],[-5,-6.4,-3.4,-5.6,-7.5,-9.3,-7.1,-8.8,-8.8,-7.4,-6.9,-6.9,-11.4,-15.2,-9.7,-13.7,-1.8,-7.8,-.8,-7.2,-9.4,-10.6,-8.7,-11.2,-10,-10.1,-7.8,-10.5,-13.2,-14.6,-13,-14.5,9.2,3.1,10.8,3,-4.5,-6.7,-2.7,-6.7,-5,-6.8,-2.5,-6.7,-7.5,-10.4,-7.4,-10.2,-50,-15.5,-50,-14.2,-8.9,-10.2,-8.5,-10,-50,-15.6,-15.3,-15.5,-13,-18.8,-12.6,-18.3],[-8.1,-1.1,-8.9,1.4,-8.6,-9.2,-9.4,-6.8,-11,-4.9,-11.5,-2.6,-13.7,-16.8,-14.5,-12.6,-6,-6.7,-7.2,-4.2,-11.6,-11.9,-11.2,-10.9,-13.1,-12.2,-12.5,-10.3,-16.8,-17.2,-17.8,-14.6,3.5,10.3,3,12.4,-6.9,-7.5,-6.8,-4.9,-5.4,-4.2,-5.4,-1.3,-10.8,-11.5,-12.4,-8.2,-50,-12.5,-50,-8.9,-9.2,-10,-9.4,-7.9,-50,-14.3,-19.9,-11.4,-16.2,-19.2,-15.8,-15.9],[-6.3,-7.4,-8,-6,2.8,-.7,.9,.3,-7.5,-4.4,-8.4,-3.6,-3,-7.7,-3.7,-6.2,-5.3,-10,-7.2,-8.9,-.7,-3.2,-1.8,-2.4,-9.9,-11.7,-9.6,-9.9,-6.3,-9.7,-8,-8.4,-3,-7.7,-4.5,-6.9,11.3,8.2,9.4,9.1,-1,-3.3,-1.8,-2.4,1.5,-2.1,-.4,-1.1,-50,-14.5,-50,-12.9,2.8,-0,1.4,.7,-50,-8.7,-14.1,-7.5,-5.2,-12.5,-6.5,-10.7],[-9.9,-5,-10,-6.5,-.7,2.6,-.2,.1,-10.3,-1.8,-9.9,-3.8,-6.4,-4.7,-5.8,-6.7,-8.2,-8.3,-8,-10.2,-3.9,-1,-2.7,-2.9,-11.7,-8.8,-11,-10.1,-9.5,-7.3,-9.4,-8.7,-7,-5.2,-6.7,-7.5,8.2,11.6,8.8,9.1,-3.7,-.9,-3.1,-3,-2,1.2,-2.3,-1.3,-50,-12.1,-50,-12.6,.1,2.5,.7,.6,-50,-6,-14.8,-7.5,-8.6,-9.4,-8.5,-11.2],[-7.5,-6.2,-7.2,-6.2,.9,.2,2.5,.2,-8.3,-3.5,-7.1,-3.7,-4.1,-6.3,-3.1,-6.3,-5.7,-8.9,-5.6,-8.4,-2.3,-2.2,.7,-2.7,-9.8,-8.9,-7.1,-9.3,-7.5,-8.2,-6.2,-7.9,-4.3,-6.2,-2.7,-6.8,9.4,8.8,12.1,8.8,-2.1,-2,.1,-2.4,0,-1.1,1.3,-.8,-50,-11.9,-50,-12.6,1.2,.7,3.5,.8,-50,-7.1,-12.4,-7.1,-7.1,-10.6,-5,-10.6],[-9,-6.5,-10,-4.8,.1,-.1,-.3,2.4,-9.9,-3.5,-10.6,-2,-5.4,-6.6,-5.6,-4.4,-7.6,-9.9,-8.5,-8.2,-3,-2.8,-3,-.9,-12.8,-11.8,-10.7,-9.3,-8.8,-9.2,-9.2,-7.1,-6.2,-7.3,-6.7,-4.9,9.1,9.1,8.8,11.2,-3.1,-3,-3.3,-1,-1.1,-1.4,-2,1.2,-50,-12.8,-50,-10.9,.8,.5,.7,2.3,-50,-7.5,-16.5,-5.9,-7.8,-11.1,-7.8,-9],[-7.1,-5.6,-9.1,-5.1,-5.9,-8,-6.9,-7.4,-1.9,-1.6,-4.7,-1.4,-9.6,-14.6,-10.4,-13,-6.7,-10.8,-9.4,-9.9,-9.1,-10.5,-9.1,-10.4,-5.9,-9.3,-7.9,-8.1,-12.7,-15,-15.1,-14.3,-2.2,-5.4,-5,-5.4,-1,-3.7,-2.1,-3.1,12.8,9.6,11.1,10.1,-4.8,-9.4,-8.1,-8.6,-50,-18.3,-50,-15.4,-5.9,-7.5,-6.6,-7.1,-50,-9.5,-11.7,-8.4,-12.5,-17.3,-13.2,-15.4],[-10.2,-1.6,-10.2,-3.2,-7.3,-4.6,-6.5,-6.2,-6.7,3,-6.8,.8,-11.9,-10.8,-11.5,-12.2,-9.6,-7.1,-9.7,-8.4,-9.8,-8.1,-8.2,-9.7,-9.4,-5,-8,-7.2,-15.2,-12.8,-14.9,-13.8,-6.6,-1.7,-6.8,-4.2,-3.3,-.9,-2,-3,9.6,12.8,9.7,10.5,-8.5,-5.6,-9.3,-7.8,-50,-12.7,-50,-13.8,-6.8,-5.1,-5.3,-6.5,-50,-4.1,-12.8,-5.8,-14.4,-14.1,-13.6,-14.8],[-8.2,-4.7,-7.1,-5,-6.5,-7.7,-5.5,-6.9,-4.1,-.8,-1.2,-.9,-10.5,-12.8,-8.2,-13,-7.5,-10,-7.2,-9.7,-9.2,-9.4,-7.3,-10.2,-6.5,-8,-4.3,-8,-13.1,-14.1,-12.2,-13.8,-3.7,-5.4,-2.5,-5.4,-1.8,-3.1,.1,-3.3,11.1,9.7,12.9,9.8,-5.5,-8.1,-5.4,-7.8,-50,-16.4,-50,-14.8,-5.9,-7.1,-4.7,-7.2,-50,-8.4,-6.4,-8.1,-12.1,-16.2,-10.3,-15.8],[-9.2,-3,-9.9,-1.2,-6.5,-6.1,-6.8,-4.4,-6.4,.9,-7,3,-11.8,-13,-11.1,-10.4,-9.3,-9.2,-9.8,-6.4,-9.5,-9.5,-9.4,-8,-8.1,-8.2,-9.4,-5.2,-14.2,-14.9,-14.9,-12.3,-5.7,-3.7,-6.7,-1.3,-2.4,-3,-2.4,-1,10.1,10.5,9.8,13.1,-7.2,-8,-8.4,-5,-50,-14.7,-50,-11.4,-6.3,-6.7,-5.8,-5,-50,-6.1,-13.4,-3.6,-13,-16,-13.7,-13.3],[-8.2,-10.8,-10.1,-9.8,-.4,-3.6,-1.7,-2.9,-7.9,-8.4,-9.8,-8.2,6.2,2.3,.6,2.9,-7.1,-11.6,-9.2,-11.1,-5.6,-8.3,-7.2,-8.4,-10.7,-13.6,-11.4,-12,0,-2.8,-1.8,-2.4,-6,-11.6,-7.5,-10.8,1.5,-2,0,-1.1,-4.8,-8.5,-5.5,-7.2,11.9,8.6,10,9,-50,-14.2,-50,-12.8,-4.1,-7.4,-5.7,-6.5,-50,-11,-14.3,-9.9,1.4,-7.9,-.7,-6.8],[-12.5,-8.7,-13,-9.9,-3.9,-1,-3.4,-2.9,-12.5,-6.3,-11.6,-8.1,3.3,6,-1.6,3.8,-10.5,-10.1,-11.1,-11.1,-9,-6.9,-8.2,-9.1,-14,-11.4,-12.3,-12.1,-3.1,.2,-3.2,-2.2,-10.4,-9.1,-10.4,-11.5,-2.1,1.2,-1.1,-1.4,-9.4,-5.6,-8.1,-8,8.6,12.4,8.6,9.5,-50,-10.4,-50,-11.6,-7.2,-5.7,-7.5,-7.4,-50,-8.6,-15.7,-9.7,-3,-3.7,-3.2,-5.9],[-11.1,-11.9,-10.6,-11.3,-2.6,-4.1,-1.7,-3.5,-11.4,-9.6,-9.6,-9.2,3.7,2.5,1.6,2.5,-9.6,-12.3,-9.5,-11.8,-8,-9.4,-7.2,-9.3,-13.3,-12.8,-10.9,-12.6,-1.8,-2.9,-.8,-2.9,-8.6,-13,-7.4,-12.4,-.4,-2.3,1.3,-2,-8.1,-9.3,-5.4,-8.4,10,8.6,11.4,8.9,-50,-13.7,-50,-13.2,-6.1,-8.1,-5.5,-7.5,-50,-11.3,-12.7,-10.1,-1.6,-7.8,-.3,-7.2],[-11.4,-10,-12.7,-8.2,-3.1,-3.1,-2.8,-.9,-11.7,-7.3,-12.1,-5.8,3.6,3.6,-1.1,5.8,-9.4,-11.9,-10.7,-10,-8.5,-8.8,-8.2,-6.5,-13.9,-13,-12.9,-10.9,-3.1,-2.3,-3.2,-.2,-9.5,-10.8,-10.2,-8.2,-1.1,-1.3,-.8,1.2,-8.6,-7.8,-7.8,-5,9,9.5,8.9,12,-50,-13,-50,-10.3,-6.2,-7,-7.1,-5.4,-50,-9.3,-14,-8.2,-2.4,-6.3,-2.4,-3.9],[-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,33.3,-50,30.6,-50,-50,-50,-50,-50,29.2,-50,-50,-50,-50,-50,-50,-50],[-14.8,-6.2,-14.9,-7.6,-14.6,-11.6,-13,-12.2,-14,-9,-14.1,-10.1,-13.6,-11.2,-12.4,-12.5,-8.1,2.2,-8.7,.4,-15.3,-11.3,-13.2,-13.3,-11.9,-7.2,-11.8,-7.9,-10.7,-7.4,-10.8,-8.9,-15.5,-10.3,-15.5,-12.5,-14.5,-12.1,-11.9,-12.8,-18.3,-12.7,-16.4,-14.7,-14.2,-10.4,-13.7,-13,-50,15.1,-50,13.3,-9.9,-5.8,-8.9,-7.6,-50,-1.5,-7.8,-3,-8.1,3.6,-9.4,2],[-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,30.6,-50,35.2,-50,-50,-50,-50,-50,28.5,-50,-50,-50,-50,-50,-50,-50],[-13.8,-7.5,-14.4,-5.1,-12.6,-11.6,-11.5,-10.1,-13.2,-9.7,-12.7,-7.4,-11.9,-11.9,-11.5,-10.2,-7.2,.9,-8.6,2.6,-14.1,-12.8,-13.3,-11,-9.7,-8.4,-11.2,-5.3,-9.3,-8.7,-9.9,-7.1,-13.9,-11.2,-14.2,-8.9,-12.9,-12.6,-12.6,-10.9,-15.4,-13.8,-14.8,-11.4,-12.8,-11.6,-13.2,-10.3,-50,13.3,-50,15.2,-8.6,-7,-8.4,-4.8,-50,-3,-7.1,-.1,-7.3,2.3,-8.7,3.9],[-7.3,-6.3,-8.9,-5.5,2.9,.2,1.5,1.2,-8.5,-2.3,-10,-1.7,-5.6,-10.5,-5.5,-9.6,-4.3,-7.9,-6.1,-7.2,2.3,-.6,.5,-0,-8.9,-11,-9.4,-9.3,-4.6,-9.4,-7.3,-8.1,-7.8,-9.8,-8.9,-9.2,2.8,.1,1.2,.8,-5.9,-6.8,-5.9,-6.3,-4.1,-7.2,-6.1,-6.2,-50,-9.9,-50,-8.6,12.5,9.4,11,9.8,-50,-4.8,-8.7,-3.5,-0,-8.6,-2.1,-7],[-10.1,-4.3,-10.8,-5.8,.1,2.3,.7,.6,-10.4,-.2,-10.8,-2,-8.8,-9.2,-8,-9.7,-6.8,-5.9,-7.5,-7,-1.4,2.2,-.9,-.4,-10.8,-7.7,-9.8,-8.8,-8.9,-7.3,-9.6,-9.1,-10.5,-8.3,-10.2,-10,-0,2.5,.7,.5,-7.5,-5.1,-7.1,-6.7,-7.4,-5.7,-8.1,-7,-50,-5.8,-50,-7,9.4,12.7,10.1,10,-50,-1.5,-11.3,-3.3,-5.4,-4.2,-5.6,-6.8],[-8.4,-6.2,-8.9,-5.9,1.8,.4,2.7,1.2,-9.1,-1.2,-8.8,-1.5,-7.2,-10.5,-4.9,-9.6,-5.7,-7.4,-5.5,-7.4,.3,-.3,1.8,-.4,-9,-8.7,-7.3,-8.9,-5.9,-9.4,-6.4,-8.7,-8.7,-9.1,-8.5,-9.4,1.4,.7,3.5,.7,-6.6,-5.3,-4.7,-5.8,-5.7,-7.5,-5.5,-7.1,-50,-8.9,-50,-8.4,11,10.1,13.2,10.2,-50,-4.2,-6.1,-3.6,-3.5,-8.4,-1.2,-6.8],[-9.1,-5.4,-10.4,-4.2,1,.5,.6,2.4,-9.6,-1.5,-10.5,-.5,-8.9,-10.5,-7.2,-8.3,-6.3,-6.9,-7.7,-5.1,-.5,.1,-.6,2.3,-11.1,-10.2,-10.5,-7,-8.3,-9.4,-9.4,-6.6,-9.6,-9.7,-10,-7.9,.7,.6,.8,2.3,-7.1,-6.5,-7.2,-5,-6.5,-7.4,-7.5,-5.4,-50,-7.6,-50,-4.8,9.8,10,10.2,12.1,-50,-3.1,-11.4,-.7,-4.6,-6.6,-4.9,-3.9],[-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,-50,29.2,-50,28.5,-50,-50,-50,-50,-50,33.3,-50,-50,-50,-50,-50,-50,-50],[-13,-7,-13.1,-8.3,-9.2,-6.5,-8.9,-7.6,-9.8,-.7,-9.2,-2.1,-12.4,-10.3,-12.4,-11.6,-9.5,-4.6,-10.4,-5.7,-13.6,-10.1,-11.4,-10.9,-6.5,-1.5,-6.2,-3.6,-12.8,-8,-12.3,-9.7,-16.5,-12.7,-15.6,-14.3,-8.7,-6,-7.1,-7.5,-9.5,-4.1,-8.4,-6.1,-11,-8.6,-11.3,-9.3,-50,-1.5,-50,-3,-4.8,-1.5,-4.2,-3.1,-50,16.4,-5.1,14.2,-10.1,-4.3,-10,-5.4],[-13.5,-16.3,-11.8,-15.5,-13.6,-15.3,-12.1,-16.1,-7.7,-13.3,-4.2,-12.6,-14.1,-16.2,-10.3,-15.4,-9.6,-11.6,-7.7,-9.8,-14.3,-17.5,-11.1,-17.2,-5.3,-7.1,-2.2,-7.1,-9.6,-11.9,-8.7,-11.4,-17.1,-20.6,-15.3,-19.9,-14.1,-14.8,-12.4,-16.5,-11.7,-12.8,-6.4,-13.4,-14.3,-15.7,-12.7,-14,-50,-7.8,-50,-7.1,-8.7,-11.3,-6.1,-11.4,-50,-5.1,18.6,-4.8,-8.6,-8.1,-4.5,-7.3],[-12.4,-8.2,-13,-5.9,-7.7,-7.8,-7.4,-5.8,-8.8,-2,-9.3,-.4,-11.6,-11.3,-11.6,-9.4,-8.9,-5.6,-10,-3.2,-11.5,-11.1,-10.5,-8.3,-6.3,-4.9,-6.7,-1.2,-10.6,-9.7,-11.3,-8,-14.8,-13.1,-15.5,-11.4,-7.5,-7.5,-7.1,-5.9,-8.4,-5.8,-8.1,-3.6,-9.9,-9.7,-10.1,-8.2,-50,-3,-50,-.1,-3.5,-3.3,-3.6,-.7,-50,14.2,-4.8,16.4,-8.9,-5.8,-8.9,-3.4],[-10.7,-13.2,-12.4,-11.6,-4.8,-8.4,-6.1,-7.2,-10.3,-11.8,-11,-11.6,2.8,-1.7,.7,-1.1,-6.2,-9.7,-7.3,-8.4,-5.3,-8.6,-6.1,-8.3,-10.5,-11.2,-9.8,-10.2,9.5,6.5,7.6,6.8,-12.1,-16,-13,-16.2,-5.2,-8.6,-7.1,-7.8,-12.5,-14.4,-12.1,-13,1.4,-3,-1.6,-2.4,-50,-8.1,-50,-7.3,-0,-5.4,-3.5,-4.6,-50,-10.1,-8.6,-8.9,13.2,-.9,9.7,-.3],[-18.1,-12.3,-19.4,-14.2,-12.2,-9.5,-11.5,-10.8,-17.9,-11.9,-18.2,-13.9,-6.4,-3.7,-6.8,-5.4,-12.8,-5.9,-13.6,-7.4,-13.7,-9.9,-12.9,-12.7,-16.2,-11.6,-15.2,-12.7,-3.2,.5,-3.3,-1.8,-18.9,-16.6,-18.8,-19.2,-12.5,-9.4,-10.6,-11.1,-17.3,-14.1,-16.2,-16,-7.9,-3.7,-7.8,-6.3,-50,3.6,-50,2.3,-8.6,-4.2,-8.4,-6.6,-50,-4.3,-8.1,-5.8,-.9,14.2,-1.8,11.6],[-11.8,-13.1,-11.5,-12,-6.2,-8.3,-5.4,-7.4,-11.8,-12.3,-11.1,-11.4,.5,-2.5,2.4,-1.6,-6.8,-9.9,-6.4,-8.9,-6.1,-8.6,-5,-7.8,-10.4,-11.6,-8.5,-9.9,8.2,6.4,8.7,6.9,-12.4,-17,-12.6,-15.8,-6.5,-8.5,-5,-7.8,-13.2,-13.6,-10.3,-13.7,-.7,-3.2,-.3,-2.4,-50,-9.4,-50,-8.7,-2.1,-5.6,-1.2,-4.9,-50,-10,-4.5,-8.9,9.7,-1.8,11.3,-.9],[-17.2,-13.3,-17.8,-11.6,-11,-11.1,-10.4,-9,-16,-12.7,-16.1,-11.1,-5.2,-5.4,-6,-3.3,-11.8,-7.3,-13.3,-5.9,-12.7,-11.9,-11.9,-9.3,-15.2,-15,-14.9,-11,-2.8,-1.8,-2.9,.4,-17.4,-18.4,-18.3,-15.9,-10.7,-11.2,-10.6,-9,-15.4,-14.8,-15.8,-13.3,-6.8,-5.9,-7.2,-3.9,-50,2,-50,3.9,-7,-6.8,-6.8,-3.9,-50,-5.4,-7.3,-3.4,-.3,11.6,-.9,14.1]];TRANS=[[5,0,0,4],[0,5,4,0],[0,4,5,0],[4,0,0,5]];CONBLO={A:0,R:1,N:2,D:3,C:4,Q:5,E:6,G:7,H:8,I:9,L:10,K:11,M:12,F:13,P:14,S:15,T:16,W:17,Y:18,V:19,B:20,Z:21,X:22,"*":23};CONNUCL={A:0,T:1,C:2,G:3};CONSCHN={AAA:0,AAC:1,AAG:2,AAT:3,ACA:4,ACC:5,ACG:6,ACT:7,AGA:8,AGC:9,AGG:10,AGT:11,ATA:12,ATC:13,ATG:14,ATT:15,CAA:16,CAC:17,CAG:18,CAT:19,CCA:20,CCC:21,CCG:22,CCT:23,CGA:24,CGC:25,CGG:26,CGT:27,CTA:28,CTC:29,CTG:30,CTT:31,GAA:32,GAC:33,GAG:34,GAT:35,GCA:36,GCC:37,GCG:38,GCT:39,GGA:40,GGC:41,GGG:42,GGT:43,GTA:44,GTC:45,GTG:46,GTT:47,TAA:48,TAC:49,TAG:50,TAT:51,TCA:52,TCC:53,TCG:54,TCT:55,TGA:56,TGC:57,TGG:58,TGT:59,TTA:60,TTC:61,TTG:62,TTT:63};fillNeedleman(){for(let t=0;t<=this.len1;t++)this.dpGrid[t][0].value=-t*this.gap,this.dpGrid[t][0].parentI=t-1,this.dpGrid[t][0].parentJ=0;for(let t=1;t<=this.len2;t++)this.dpGrid[0][t].value=-t*this.gap,this.dpGrid[0][t].parentI=0,this.dpGrid[0][t].parentJ=t-1}fillOne(t,e){this.dpGrid[t][e].value=Math.max(this.dpGrid[t-1][e-1].value+this.scores[t-1][e-1],Math.max(this.dpGrid[t-1][e].value-this.gap,this.dpGrid[t][e-1].value-this.gap)),this.dpGrid[t][e].value==this.dpGrid[t-1][e-1].value+this.scores[t-1][e-1]?(this.dpGrid[t][e].parentI=t-1,this.dpGrid[t][e].parentJ=e-1):this.dpGrid[t][e].value==this.dpGrid[t-1][e].value-this.gap?(this.dpGrid[t][e].parentI=t-1,this.dpGrid[t][e].parentJ=e):(this.dpGrid[t][e].parentI=t,this.dpGrid[t][e].parentJ=e-1)}gridFromName(t){switch(t){case"BLOSUM45":this.alignGrid=this.BLOSUM45,this.connections=this.CONBLO,this.step=1;break;case"BLOSUM50":this.alignGrid=this.BLOSUM50,this.connections=this.CONBLO,this.step=1;break;case"BLOSUM62":this.alignGrid=this.BLOSUM62,this.connections=this.CONBLO,this.step=1;break;case"BLOSUM80":this.alignGrid=this.BLOSUM80,this.connections=this.CONBLO,this.step=1;break;case"BLOSUM90":this.alignGrid=this.BLOSUM90,this.connections=this.CONBLO,this.step=1;break;case"PAM30":this.alignGrid=this.PAM30,this.connections=this.CONBLO,this.step=1;break;case"PAM70":this.alignGrid=this.PAM70,this.connections=this.CONBLO,this.step=1;break;case"PAM250":this.alignGrid=this.PAM250,this.connections=this.CONBLO,this.step=1;break;case"NUCLEOTIDES":this.alignGrid=this.NUCLEOTIDES,this.connections=this.CONNUCL,this.step=1;break;case"TRANS":this.alignGrid=this.TRANS,this.connections=this.CONNUCL,this.step=1;break;case"SCHNEIDER":this.alignGrid=this.SCHNEIDER,this.connections=this.CONSCHN,this.step=3}this.fillScores()}constructResult(t,e){let n="",i="",r="";const s=this.dpGrid[t][e].value;for(let t=0;t<this.step;t++)r+="|";for(;t>0||e>0;){this.dpGrid[t][e].parentI==t?(n=r+n,i=this.seq2.substr((e-1)*this.step,this.step)+i):this.dpGrid[t][e].parentJ==e?(i=r+i,n=this.seq1.substr((t-1)*this.step,this.step)+n):(n=t-1>=0?this.seq1.substr((t-1)*this.step,this.step)+n:r+n,i=e-1>=0?this.seq2.substr((e-1)*this.step,this.step)+i:r+i);const o=t;t=this.dpGrid[t][e].parentI,e=this.dpGrid[o][e].parentJ}return new o(n,i,s)}fillScores(){this.scores=[];for(let t=0;t<this.len1;t++){this.scores.push([]);for(let e=0;e<this.len2;e++)this.scores[t].push(this.alignGrid[this.connections[this.seq1.substr(t*this.step,this.step)]][this.connections[this.seq2.substr(e*this.step,this.step)]])}}typeRec(){if(/[ATGC]*/.test(this.seq1)&&/[ATGC]*/.test(this.seq2))return"NUCLEOTIDES";if(/[ARNDCQEGHILKMFPSTWYVBZX*]*/.test(this.seq1)&&/[ARNDCQEGHILKMFPSTWYVBZX*]*/.test(this.seq2))return"BLOSUM62";throw Error("Can't recognize sequence type")}needlemanWunsch(){this.dpGrid=[];for(let t=0;t<this.len1+1;t++){const t=[];for(let e=0;e<this.len2+1;e++)t.push(new i);this.dpGrid.push(t)}this.fillNeedleman();for(let t=1;t<=this.len1;t++)for(let e=1;e<=this.len2;e++)this.fillOne(t,e);return this.constructResult(this.len1,this.len2)}smithWaterman(){this.dpGrid=[];for(let t=0;t<this.len1+1;t++){const t=[];for(let e=0;e<this.len2+1;e++)t.push(new i);this.dpGrid.push(t)}let t=0,e=0,n=0;for(let i=1;i<=this.len1;i++)for(let o=1;o<=this.len2;o++)this.fillOne(i,o),this.dpGrid[i][o].value<=0?(this.dpGrid[i][o].value=0,this.dpGrid[i][o].parentI=0,this.dpGrid[i][o].parentJ=0):0==this.dpGrid[this.dpGrid[i][o].parentI][this.dpGrid[i][o].parentJ].value&&(this.dpGrid[i][o].parentI=0,this.dpGrid[i][o].parentJ=0),this.dpGrid[i][o].value>t&&(t=this.dpGrid[i][o].value,e=i,n=o);return this.constructResult(e,n)}setSequences(t,e){this.seq1=t,this.seq2=e,this.len1=this.seq1.length/this.step,this.len2=this.seq2.length/this.step,this.fillScores()}setGap(t){this.gap=t}setMethod(t=""){"AUTO"==t&&(t=this.typeRec()),this.gridFromName(t)}constructor(t,e,n,i=""){this.setMethod(i),this.setSequences(t,e),this.setGap(n)}}},4954:(t,e,n)=>{"use strict";n.d(e,{a7:()=>m,if:()=>g,BQ:()=>y,nI:()=>f});var i=n(4328),o=n(7389),r=n(6082),s=n(8070),a=n(2003),l=n(439);const c=31;async function h(t,e,n=!1,o){const s=e.getSeqHandler(t);let a;o??=new Map;const l=s.isHelm()?e.getSeqMonomers(t):Object.keys(s.stats.freq).filter((t=>""!==t));for(let t=0;t<l.length;t++)o.has(l[t])||o.set(l[t],`${o.size+1}`);if(s.isHelm())a=await i.functions.call("HELM:getMolFiles",{col:t}),a=function(t,e,n=!1){const i=new Array(t.length);for(let o=0;o<t.length;o++){let r=0,s=0,a="\n Datagrok macromolecule handler\n\n 0 0 0 0 0 0 999 V3000\nM V30 BEGIN CTAB\n";const l=t.get(o);r=l.indexOf("\n",r)+1,r=l.indexOf("\n",r)+1,r=l.indexOf("\n",r)+1;const h=parseInt(l.substring(r,r+3)),u=parseInt(l.substring(r+3,r+6));a+=`M V30 COUNTS ${h} ${u} 0 0 0\n`,a+="M V30 BEGIN ATOM\n";for(let t=0;t<h;t++){r=l.indexOf("\n",r)+1+c,s=l.indexOf(" ",r);const i=l.substring(r,s);a+=n?`M V30 ${t+1} R${e.get(i)} 0.000 0.000 0 0\n`:`M V30 ${t+1} At 0.000 0.000 0 0 MASS=${e.get(i)}\n`}a+="M V30 END ATOM\n",a+="M V30 BEGIN BOND\n";for(let t=0;t<u;t++){r=l.indexOf("\n",r)+1;const e=parseInt(l.substring(r,r+3).trim()),n=parseInt(l.substring(r+3,r+6).trim());a+=`M V30 ${t+1} ${parseInt(l.substring(r+6,r+9).trim())} ${e} ${n}\n`}a+="M V30 END BOND\n",a+="M V30 END CTAB\n",a+="M END",i[o]=a}return i}(a,o,n);else{a=new Array(t.length);for(let e=0;e<t.length;e++){const t=u(s.getSplitted(e),o,n);a[e]=t}}return r.Column.fromStrings("monomericMols",a)}function u(t,e,n=!1){let i="\n Datagrok macromolecule handler\n\n 0 0 0 0 0 0 999 V3000\nM V30 BEGIN CTAB\n";i+=`M V30 COUNTS ${t.length} ${t.length?t.length-1:0} 0 0 0\n`,i+="M V30 BEGIN ATOM\n";for(let o=0;o<t.length;o++){const r=t.getCanonical(o);r!==l._S&&(i+=n?`M V30 ${o+1} R${e.get(r)} 0.000 0.000 0 0\n`:`M V30 ${o+1} At 0.000 0.000 0 0 MASS=${e.get(r)}\n`)}i+="M V30 END ATOM\n",i+="M V30 BEGIN BOND\n";for(let e=0;e<t.length-1;e++)i+=`M V30 ${e+1} 1 ${e+1} ${e+2}\n`;return i+="M V30 END BOND\n",i+="M V30 END CTAB\n",i+="M END",i}var d=n(4870);const p="substr_helm";class m{seqHelper;units;separator;inputsDiv;substructureInput;separatorInput;editHelmLink;columnsInput;grid;col;dialog;constructor(t,e){this.seqHelper=e,this.col=t[0],this.createUI()}editHelmLinkAction(){(0,d.Ku)(this.inputsDiv,this.grid.root),o.tools.waitForElementInDom(this.grid.root).then((()=>{setTimeout((()=>{this.grid.cell(p,0).element.children[0].dispatchEvent(new KeyboardEvent("keydown",{key:"Enter"}))}),100)}))}updateInputs(){const t=this.units===a.Hi.HELM?o.divV([this.columnsInput,this.editHelmLink]):this.units===a.Hi.SEPARATOR?o.inputs([this.columnsInput,this.substructureInput,this.separatorInput]):o.inputs([this.columnsInput,this.substructureInput]);(0,d.Ku)(this.inputsDiv,t)}updateNotationDiv(){this.units=this.col.meta.units,this.separator=this.col.getTag(a.gp.separator);const t=this.dialog.root.getElementsByClassName("notation-text")[0];t&&(t.textContent=`Notation: ${this.units}`)}createUI(){const t=i.shell.tv.dataFrame;this.columnsInput=o.input.column("Column",{table:t,value:this.col,onValueChanged:t=>{this.col=t,this.updateNotationDiv(),this.updateInputs()},filter:t=>t.semType===r.SEMTYPE.MACROMOLECULE}),this.substructureInput=o.input.string("Substructure",{value:""}),this.editHelmLink=o.link("Edit helm",(()=>this.editHelmLinkAction()),void 0,{style:{position:"relative",left:"95px"}});const e=r.DataFrame.create(1);e.columns.addNewString(p).init((t=>"")),e.col(p).semType=this.col.semType,e.col(p).meta.units=a.Hi.HELM,this.grid=e.plot.grid(),this.separatorInput=o.input.string("Separator",{value:this.separator}),this.inputsDiv=o.div(),this.units=this.col.meta.units,this.separator=this.col.getTag(a.gp.separator),this.updateInputs(),this.dialog=o.dialog("Substructure Search").add(o.divV([o.divText(`Notation: ${this.units}`,"notation-text"),this.inputsDiv])).onOK((async()=>{let t,n=this.units===a.Hi.HELM?e.get(p,0):this.substructureInput.value;this.units===a.Hi.SEPARATOR&&this.separatorInput.value!==this.separator&&this.separatorInput.value&&(n=n.replaceAll(this.separatorInput.value,this.separator)),t=this.units===a.Hi.HELM?await g(n,this.col,this.seqHelper):f(n,this.col),this.col.dataFrame.filter.and(t)})).show()}}function f(t,e,n){const i=n?function(t,e){const n=`${e}`.replace(/[\-\[\]\/\{\}\(\)\*\+\?\.\\\^\$\|]/g,"\\$&"),i=t.charAt(0)===e,o=t.charAt(t.length-1)===e,r=t.replace(new RegExp(`^${n}|${n}$`,"g"),"");return i?o?`${n}${r}${n}`:`${n}${r}${n}|${n}${r}$`:o?`^${r}${n}|${n}${r}${n}`:`^${r}${n}|${n}${r}${n}|${n}${r}$`}(t,n):t,o=r.BitSet.create(e.length);for(let n=0;n<e.length;n++){const r=e.get(n);(r.match(i)||r===t)&&o.set(n,!0,!1)}return o}async function g(t,e,n){e.version!==e.temp["last-invalidated-version"]&&await y(e,n,!0);const o=r.Column.string("helm",1).init((e=>t));o.semType=r.SEMTYPE.MACROMOLECULE,o.meta.units=a.Hi.HELM;const s=await h(o,n,!0,e.temp["monomers-dict"]);return(await i.functions.call("Chem:searchSubstructure",{molStringsColumn:e.temp["monomeric-mols"],molString:s.get(0),molBlockFailover:""})).get(0)}async function y(t,e,n){const i=r.TaskBarProgressIndicator.create(`Invalidating molfiles for ${t.name}`);try{await(0,s.cb)(10);const i=new Map,o=await h(t,e,n,i);t.temp["monomeric-mols"]=o,t.temp["monomers-dict"]=i,t.temp["last-invalidated-version"]=t.version}finally{i.close()}}},966:(t,e,n)=>{"use strict";n.d(e,{V:()=>s,l:()=>a});var i=n(4328),o=n(6082),r=n(6723);function s(t,e,n=[],o=[],s=!0){const l=r._package.seqHelper,[c,h]=a(t,e,l,n,o);return s&&!c&&i.shell.warning(h),c}function a(t,e,n,r=[],s=[]){let a=!0,l="";if(t.semType!==o.SEMTYPE.MACROMOLECULE)i.shell.warning(e+" analysis is allowed for Macromolecules semantic type"),a=!1;else{const i=n.getSeqHandler(t),o=i.notation;if(r.length>0&&!r.some((t=>o.toUpperCase()==t.toUpperCase())))l=`${e} + ' analysis is allowed for Macromolecules with notation ${0==r.length?"any notation":`notation${r.length>1?"s":""} ${r.map((t=>`"${t}"`)).join(", ")} `}.`,a=!1;else if(!i.isHelm()){const t=i.alphabet;s.length>0&&!s.some((e=>t.toUpperCase()==e.toUpperCase()))&&(l=`${e} + ' analysis is allowed for Macromolecules with alphabet ${0==s.length?"any alphabet":`alphabet${s.length>1?"s":""} ${s.map((t=>`"${t}"`)).join(", ")}.`}.`,a=!1)}}return[a,l]}},4139:(t,e,n)=>{"use strict";n.d(e,{HX:()=>h,J:()=>a,b9:()=>c,uF:()=>r});var i,o,r,s,a,l=n(8152);!function(t){t.SPLIT_COL="~split",t.ACTIVITY="~activity",t.ACTIVITY_SCALED="activity_scaled",t.ALIGNED_SEQUENCE="~aligned_sequence",t.AMINO_ACID_RESIDUE="AAR",t.POSITION="Pos",t.P_VALUE="pValue",t.MEAN_DIFFERENCE="Mean difference"}(i||(i={})),function(t){t.AAR="AAR",t.POSITION="Pos",t.SELECTION="selection"}(o||(o={})),function(t){t.MONOMER="Monomer",t.MACROMOLECULE_DIFFERENCE="MacromoleculeDifference",t.ACTIVITY="activity",t.ACTIVITY_SCALED="activityScaled"}(r||(r={})),function(t){t.CELL_CHANGING="isCellChanging"}(s||(s={})),function(t){t.SEPARATOR="."}(a||(a={}));const c="3.3.1",h={pepsea:{gapOpen:1.53,gapExtend:0,method:l.ZY[0]},kalign:{gapOpen:-1,gapExtend:-1,terminalGap:-1}}},5433:(t,e,n)=>{"use strict";n.d(e,{C:()=>u});var i=n(6082),o=n(7389),r=n(4328),s=n(1757),a=n.n(s),l=n(2003);let c=null,h=[];function u(t,e){let n=t??r.shell.t.columns.bySemType("Macromolecule");if(!n)throw new Error("No column with Macromolecule semantic type found");let s=e.getSeqHandler(n),u=s.notation;const d=o.divText("Current notation: "+u,{style:{"text-align":"center","font-weight":"bold","font-size":"14px",padding:"5px"}}),p=[l.Hi.FASTA,l.Hi.SEPARATOR,l.Hi.HELM],m=o.input.column("Column",{table:r.shell.t,value:n,filter:t=>t.semType===i.SEMTYPE.MACROMOLECULE,nullable:!1,onValueChanged:t=>(n=t,s=e.getSeqHandler(n),u=s.notation,u===l.Hi.HELM&&(y.value="/"),d.textContent="Current notation: "+u,g=p.filter((t=>t!==u)),v=o.input.choice("Convert to",{value:g[0],items:g,onValueChanged:b}),b(),c?.clear(),void c?.add(o.div([d,m.root,v.root,y.root])))}),f=["-",".","/"];let g=p.filter((t=>t!==u));const y=o.input.choice("Separator",{value:f[0],items:f}),b=()=>{v.value!==l.Hi.SEPARATOR?a()(y.root).hide():a()(y.root).show()};let v=o.input.choice("Convert to",{value:g[0],items:g,onValueChanged:b});b(),v.onChanged.subscribe((()=>{b()})),null==c&&(c=o.dialog("Convert Sequence Notation").add(o.div([d,m.root,v.root,y.root])).onOK((async()=>{const t=v.value,i=t===l.Hi.SEPARATOR?y.value:void 0;await async function(t,e,n,i){const o=e.getSeqHandler(t).convert(n,i);t.dataFrame.columns.add(o);const s=await r.functions.call("Bio:detectMacromolecule",{col:o});return s&&(o.semType=s),await r.data.detectSemanticTypes(t.dataFrame),o}(n,e,t,i)})).show({x:350,y:100}),h.push(c.onClose.subscribe((t=>{h.forEach((t=>{t.unsubscribe()})),h=[],c=null}))))}},536:(t,e,n)=>{"use strict";n.d(e,{Z:()=>o});var i=n(6956);class o{constructor(t){const e=t.split(i.xe).filter((t=>t));e.forEach((t=>this.validateConnectionItem(t))),this.connectionItems=e}connectionItems;validateConnectionItem(t){const e="(PEPTIDE|RNA)",n=new RegExp(`${e}[0-9]+,${e}[0-9]+,[0-9]+:R[0-9]+-[0-9]+:R[0-9]+`,"g");if(!t.match(n))throw new Error(`Cannot parse connection item from ${t}`)}getConnectionData(){const t=[];return this.connectionItems.forEach((e=>{const n=[],i=e.split(",");i[2].split("-").forEach(((t,e)=>{const o=i[e],r=t.split(":"),s={monomerIdx:parseInt(r[0])-1,rGroupId:parseInt(r[1].slice(1))};n.push({polymerId:o,bond:s})})),t.push(n)})),t}}},6956:(t,e,n)=>{"use strict";n.d(e,{mP:()=>r,pk:()=>o,xe:()=>i});const i="|",o="$",r="H"},9099:(t,e,n)=>{"use strict";n.d(e,{f:()=>s});var i=n(536),o=n(6956),r=n(9034);class s{helmString;constructor(t){this.helmString=t;const e=this.helmString.split(o.pk),n=e[0].split(o.xe);this.simplePolymers=n.map((t=>new r.d(t))),this.connectionList=new i.Z(e[1]),this.bondData=this.getBondData(),this.bondedRGroupsMap=this.getBondedRGroupsMap()}bondData;simplePolymers;connectionList;bondedRGroupsMap;getBondedRGroupsMap(){const t=this.simplePolymers.map((t=>t.monomers.length)).reduce(((t,e)=>t+e),0),e=Array.from({length:t},(()=>[]));return this.bondData.forEach((t=>{t.forEach((t=>{const n=t.monomerIdx,i=t.rGroupId;e[n].push(i)}))})),e}toString(){return this.helmString}getPolymerTypeByMonomerIdx(t){return this.getSimplePolymerByMonomerIdx(t).polymerType}getSimplePolymerByMonomerIdx(t){const e=this.getMonomerIdxShifts(),n=Object.values(e).sort(((t,e)=>t-e)).find((e=>t>=e));if(void 0===n)throw new Error(`Cannot find simple polymer for monomer ${t}`);const i=Object.keys(e).find((t=>e[t]===n));return this.simplePolymers.find((t=>t.id===i))}shiftBondMonomerIds(t,e){e.forEach((e=>{e.forEach((e=>{e.monomerIdx+=t}))}))}getMonomerIdxShifts(){const t={};let e=0;return this.simplePolymers.forEach((n=>{t[n.id]=e,e+=n.monomers.length})),t}getBondData(){const t=this.getMonomerIdxShifts(),e=[];return this.simplePolymers.forEach((n=>{const i=n.getBondData(),o=t[n.id];this.shiftBondMonomerIds(o,i),e.push(...i)})),this.connectionList.getConnectionData().forEach((n=>{const i=[];n.forEach((e=>{const n=t[e.polymerId],o=e.bond;o.monomerIdx+=n,i.push(o)})),e.push(i)})),e}}},9034:(t,e,n)=>{"use strict";n.d(e,{d:()=>o});var i=n(8438);class o{simplePolymer;isNucleotideSequence=!1;constructor(t){this.simplePolymer=t,this.polymerType=this.getPolymerType(),this.isNucleotideSequence="RNA"===this.polymerType,this.idx=this.getIdx();const{monomers:e,monomerTypes:n}=this.getMonomerSymbolsAndTypes();this.monomers=e,this.monomerTypes=n}polymerType;monomers;idx;monomerTypes;get id(){return this.polymerType+this.idx.toString()}getPolymerType(){const t=new RegExp("(PEPTIDE|RNA)[0-9]+{"),e=this.simplePolymer.match(t);if(!e)throw new Error(`Unsupported polymer type in ${this.simplePolymer}`);return e[1]}getIdx(){const t=new RegExp(`${this.polymerType}([0-9]+){`),e=this.simplePolymer.match(t);if(!e)throw new Error(`Cannot parse simple polymer id from ${this.simplePolymer}`);return parseInt(e[1])}getMonomerSymbolsAndTypes(){const t=new RegExp(`${this.polymerType}${this.idx}{|}`,"g"),e=this.simplePolymer.replace(t,"").split("."),n=[],o=[];return e.forEach((t=>{if(this.isNucleotideSequence){const e=t.split(/\(|\)/).filter((t=>!!t)).map((t=>(0,i.D)(t)));n.push(...e),e.forEach(((t,e)=>o.push(e%3==1?"Branch":"Backbone")))}else n.push((0,i.D)(t)),o.push("Backbone")})),{monomers:n,monomerTypes:o}}getBondData(){const t=[],e=this.monomerTypes.map(((t,e)=>{if("Backbone"===t)return e})).filter((t=>void 0!==t)),n=this.monomerTypes.map(((t,e)=>{if("Branch"===t)return e})).filter((t=>void 0!==t));for(let n=0;n<e.length-1;n++){const i=e[n],o=e[n+1];t.push([{monomerIdx:i,rGroupId:2},{monomerIdx:o,rGroupId:1}])}for(let e=0;e<n.length;e++){const i=n[e],o=i-1;t.push([{monomerIdx:o,rGroupId:3},{monomerIdx:i,rGroupId:1}])}return t}}},8604:(t,e,n)=>{"use strict";n.d(e,{Es:()=>o,G3:()=>s,gt:()=>r,so:()=>i});const i="System:AppData/Bio/monomer-libraries/",o="System:AppData/Bio/monomer-sets/",r="System:AppData/Bio/tests/libraries/HELMmonomerSchema.json",s={explicit:["HELMCoreLibrary.json","polytool-lib.json"],exclude:[],duplicateMonomerPreferences:{}}},1619:(t,e,n)=>{"use strict";n.d(e,{D:()=>_});var i=n(4328),o=n(6082),r=n(7389),s=n(8070),a=n(2003),l=n(608),c=n(8152),h=n(966),u=n(4139),d=n(5072),p=n.n(d),m=n(7825),f=n.n(m),g=n(7659),y=n.n(g),b=n(5056),v=n.n(b),w=n(540),C=n.n(w),A=n(1113),S=n.n(A),x=n(6369),E={};E.styleTagTransform=S(),E.setAttributes=v(),E.insert=y().bind(null,"head"),E.domAPI=f(),E.insertStyleElement=C(),p()(x.A,E),x.A&&x.A.locals&&x.A.locals;var T=n(6723);async function _(t,e){return new Promise((async(n,a)=>{t.clustersCol??=null,t.pepsea??={},t.pepsea.method??=u.HX.pepsea.method,t.pepsea.gapOpen??=u.HX.pepsea.gapOpen,t.pepsea.gapExtend??=u.HX.pepsea.gapExtend;const h=t.col?.dataFrame??i.shell.t,d=t.col??h.columns.bySemType(o.SEMTYPE.MACROMOLECULE);if(null==d){const t="Multiple Sequence Alignment analysis requires a dataset with a macromolecule column.";return i.shell.warning(t),void a(new l.Ap(r.divText(t)))}const p=r.input.choice("Method",{value:t.pepsea.method,items:c.ZY});p.setTooltip("Alignment method");const m=r.input.float("Terminal gap",{value:t?.kalign?.terminalGap});m.setTooltip("Penalty for opening a gap at the beginning or end of the sequence");const f=r.p(`Kalign version: ${u.b9}`,"kalign-version"),g=r.input.float("Gap open",{value:t.pepsea.gapOpen});g.setTooltip("Gap opening penalty at group-to-group alignment");const y=r.input.float("Gap extend",{value:t.pepsea.gapExtend});y.setTooltip("Gap extension penalty to skip the alignment");const b=r.inputs([g,y,m]),v=r.button("Alignment parameters",(()=>{b.hidden=!b.hidden,[g,y,m].forEach((t=>{t.root.style.removeProperty("max-width"),t.captionLabel.style.removeProperty("max-width")}))}),"Adjust alignment parameters such as penalties for opening and extending gaps");v.classList.add("msa-params-button"),b.hidden=!0,v.prepend(r.icons.settings((()=>null)));const w=[p.root.style],C=[m.root.style,f.style];let A,S=d;const x=r.input.column("Sequence",{table:h,value:d,onValueChanged:async t=>{if(!t||t.semType!==o.SEMTYPE.MACROMOLECULE)return _.disabled=!0,await(0,s.cb)(0),void(x.value=S);S=t,_.disabled=!1,A=await I(x.value,h,e,w,C,p,E,g,y,m)},filter:t=>t.semType===o.SEMTYPE.MACROMOLECULE});x.setTooltip("Sequences column to use for alignment");const E=r.input.column("Clusters",{table:h,value:t.clustersCol});E.nullable=!0;const T=r.dialog("MSA").add(x).add(E).add(p).add(b).add(v).add(f).onOK((async()=>{await M(x,h,A,n,a)})),_=T.getButton("OK");if(x.fireChanged(),t.col)return A=await I(t.col,h,e,w,C,p,E,g,y,m),void await M(x,h,A,n,a);T.show()}))}async function M(t,e,n,r,s){let a=null;const l=o.TaskBarProgressIndicator.create("Analyze for MSA ...");try{if(t.fireChanged(),t.value.semType!==o.SEMTYPE.MACROMOLECULE)throw new Error("Chosen column has to be of Macromolecule semantic type");if(void 0===n)throw new Error("Invalid column format");if(a=await n(),null==a)return s("PepSeA container has not started");e.columns.add(a),await i.data.detectSemanticTypes(e),r(a)}catch(t){s(t)}finally{l.close()}}async function I(t,e,n,r,s,d,p,m,f,g){try{if(t.semType!==o.SEMTYPE.MACROMOLECULE)return;const i=e.columns.getUnusedName(`msa(${t.name})`);if((0,h.l)(t,t.name,n,[a.Hi.FASTA,a.Hi.SEPARATOR],[a.YI.DNA,a.YI.RNA,a.YI.PT])[0]){L(r,s,"kalign"),m.value=null,f.value=null,g.value=null;const e=n.getSeqHandler(t),o=e.isFasta()?t:e.convert(a.Hi.FASTA);return async()=>await(0,l.eE)(o,!1,i,p.value)}if((0,h.l)(t,t.name,n,[a.Hi.HELM],[])[0])return L(r,s,"pepsea"),m.value??=u.HX.pepsea.gapOpen,f.value??=u.HX.pepsea.gapExtend,async()=>(0,c.GD)(t,i,d.value,m.value,f.value,p.value);if((0,h.l)(t,t.name,n,[a.Hi.SEPARATOR],[a.YI.UN])[0]){const e=n.getSeqHandler(t).convert(a.Hi.HELM);return L(r,s,"pepsea"),m.value??=u.HX.pepsea.gapOpen,f.value??=u.HX.pepsea.gapExtend,async()=>(0,c.GD)(e,i,d.value,m.value,f.value,p.value)}return m.value=null,f.value=null,g.value=null,void L(r,s,"kalign")}catch(t){const e=t instanceof Error?t.message:t.toString();i.shell.error(e),T._package.logger.error(e)}}function L(t,e,n){if("kalign"===n){for(const e of t)e.display="none";for(const t of e)t.removeProperty("display")}else{for(const t of e)t.display="none";for(const e of t)e.removeProperty("display")}}},608:(t,e,n)=>{"use strict";n.d(e,{Ap:()=>H,aZ:()=>B,eE:()=>F});var i=n(7389),o=n(6082),r=n(1991),s=n.n(r),a=n(3516),l=n(2003);const c=Symbol("Comlink.proxy"),h=Symbol("Comlink.endpoint"),u=Symbol("Comlink.releaseProxy"),d=Symbol("Comlink.thrown"),p=t=>"object"==typeof t&&null!==t||"function"==typeof t,m=new Map([["proxy",{canHandle:t=>p(t)&&t[c],serialize(t){const{port1:e,port2:n}=new MessageChannel;return f(t,e),[n,[n]]},deserialize:t=>(t.start(),y(t))}],["throw",{canHandle:t=>p(t)&&d in t,serialize({value:t}){let e;return e=t instanceof Error?{isError:!0,value:{message:t.message,name:t.name,stack:t.stack}}:{isError:!1,value:t},[e,[]]},deserialize(t){throw t.isError?Object.assign(new Error(t.value.message),t.value):t.value}}]]);function f(t,e=self){e.addEventListener("message",(function n(i){if(!i||!i.data)return;const{id:o,type:r,path:s}=Object.assign({path:[]},i.data),a=(i.data.argumentList||[]).map(x);let l;try{const e=s.slice(0,-1).reduce(((t,e)=>t[e]),t),n=s.reduce(((t,e)=>t[e]),t);switch(r){case"GET":l=n;break;case"SET":e[s.slice(-1)[0]]=x(i.data.value),l=!0;break;case"APPLY":l=n.apply(e,a);break;case"CONSTRUCT":l=function(t){return Object.assign(t,{[c]:!0})}(new n(...a));break;case"ENDPOINT":{const{port1:e,port2:n}=new MessageChannel;f(t,n),l=function(t,e){return A.set(t,e),t}(e,[e])}break;case"RELEASE":l=void 0;break;default:return}}catch(t){l={value:t,[d]:0}}Promise.resolve(l).catch((t=>({value:t,[d]:0}))).then((t=>{const[i,s]=S(t);e.postMessage(Object.assign(Object.assign({},i),{id:o}),s),"RELEASE"===r&&(e.removeEventListener("message",n),g(e))}))})),e.start&&e.start()}function g(t){(function(t){return"MessagePort"===t.constructor.name})(t)&&t.close()}function y(t,e){return v(t,[],e)}function b(t){if(t)throw new Error("Proxy has been released and is not useable")}function v(t,e=[],n=function(){}){let i=!1;const o=new Proxy(n,{get(n,r){if(b(i),r===u)return()=>E(t,{type:"RELEASE",path:e.map((t=>t.toString()))}).then((()=>{g(t),i=!0}));if("then"===r){if(0===e.length)return{then:()=>o};const n=E(t,{type:"GET",path:e.map((t=>t.toString()))}).then(x);return n.then.bind(n)}return v(t,[...e,r])},set(n,o,r){b(i);const[s,a]=S(r);return E(t,{type:"SET",path:[...e,o].map((t=>t.toString())),value:s},a).then(x)},apply(n,o,r){b(i);const s=e[e.length-1];if(s===h)return E(t,{type:"ENDPOINT"}).then(x);if("bind"===s)return v(t,e.slice(0,-1));const[a,l]=C(r);return E(t,{type:"APPLY",path:e.map((t=>t.toString())),argumentList:a},l).then(x)},construct(n,o){b(i);const[r,s]=C(o);return E(t,{type:"CONSTRUCT",path:e.map((t=>t.toString())),argumentList:r},s).then(x)}});return o}function w(t){return Array.prototype.concat.apply([],t)}function C(t){const e=t.map(S);return[e.map((t=>t[0])),w(e.map((t=>t[1])))]}const A=new WeakMap;function S(t){for(const[e,n]of m)if(n.canHandle(t)){const[i,o]=n.serialize(t);return[{type:"HANDLER",name:e,value:i},o]}return[{type:"RAW",value:t},A.get(t)||[]]}function x(t){switch(t.type){case"HANDLER":return m.get(t.name).deserialize(t.value);case"RAW":return t.value}}function E(t,e,n){return new Promise((i=>{const o=new Array(4).fill(0).map((()=>Math.floor(Math.random()*Number.MAX_SAFE_INTEGER).toString(16))).join("-");t.addEventListener("message",(function e(n){!n.data||!n.data.id||n.data.id!==o||(t.removeEventListener("message",e),i(n.data))})),t.start&&t.start(),t.postMessage(Object.assign({id:o},e),n)}))}const T="(function(){"use strict";const $=Symbol("Comlink.proxy"),A=Symbol("Comlink.endpoint"),R=Symbol("Comlink.releaseProxy"),y=Symbol("Comlink.thrown"),_=e=>typeof e=="object"&&e!==null||typeof e=="function",L={canHandle:e=>_(e)&&e[$],serialize(e){const{port1:r,port2:i}=new MessageChannel;return w(e,r),[i,[i]]},deserialize(e){return e.start(),C(e)}},O={canHandle:e=>_(e)&&y in e,serialize({value:e}){let r;return e instanceof Error?r={isError:!0,value:{message:e.message,name:e.name,stack:e.stack}}:r={isError:!1,value:e},[r,[]]},deserialize(e){throw e.isError?Object.assign(new Error(e.value.message),e.value):e.value}},E=new Map([["proxy",L],["throw",O]]);function w(e,r=self){r.addEventListener("message",function i(s){if(!s||!s.data)return;const{id:o,type:a,path:n}=Object.assign({path:[]},s.data),c=(s.data.argumentList||[]).map(m);let l;try{const u=n.slice(0,-1).reduce((d,p)=>d[p],e),f=n.reduce((d,p)=>d[p],e);switch(a){case"GET":l=f;break;case"SET":u[n.slice(-1)[0]]=m(s.data.value),l=!0;break;case"APPLY":l=f.apply(u,c);break;case"CONSTRUCT":{const d=new f(...c);l=z(d)}break;case"ENDPOINT":{const{port1:d,port2:p}=new MessageChannel;w(e,p),l=N(d,[d])}break;case"RELEASE":l=void 0;break;default:return}}catch(u){l={value:u,[y]:0}}Promise.resolve(l).catch(u=>({value:u,[y]:0})).then(u=>{const[f,d]=S(u);r.postMessage(Object.assign(Object.assign({},f),{id:o}),d),a==="RELEASE"&&(r.removeEventListener("message",i),M(r))})}),r.start&&r.start()}function T(e){return e.constructor.name==="MessagePort"}function M(e){T(e)&&e.close()}function C(e,r){return b(e,[],r)}function h(e){if(e)throw new Error("Proxy has been released and is not useable")}function b(e,r=[],i=function(){}){let s=!1;const o=new Proxy(i,{get(a,n){if(h(s),n===R)return()=>g(e,{type:"RELEASE",path:r.map(c=>c.toString())}).then(()=>{M(e),s=!0});if(n==="then"){if(r.length===0)return{then:()=>o};const c=g(e,{type:"GET",path:r.map(l=>l.toString())}).then(m);return c.then.bind(c)}return b(e,[...r,n])},set(a,n,c){h(s);const[l,u]=S(c);return g(e,{type:"SET",path:[...r,n].map(f=>f.toString()),value:l},u).then(m)},apply(a,n,c){h(s);const l=r[r.length-1];if(l===A)return g(e,{type:"ENDPOINT"}).then(m);if(l==="bind")return b(e,r.slice(0,-1));const[u,f]=F(c);return g(e,{type:"APPLY",path:r.map(d=>d.toString()),argumentList:u},f).then(m)},construct(a,n){h(s);const[c,l]=F(n);return g(e,{type:"CONSTRUCT",path:r.map(u=>u.toString()),argumentList:c},l).then(m)}});return o}function D(e){return Array.prototype.concat.apply([],e)}function F(e){const r=e.map(S);return[r.map(i=>i[0]),D(r.map(i=>i[1]))]}const P=new WeakMap;function N(e,r){return P.set(e,r),e}function z(e){return Object.assign(e,{[$]:!0})}function S(e){for(const[r,i]of E)if(i.canHandle(e)){const[s,o]=i.serialize(e);return[{type:"HANDLER",name:r,value:s},o]}return[{type:"RAW",value:e},P.get(e)||[]]}function m(e){switch(e.type){case"HANDLER":return E.get(e.name).deserialize(e.value);case"RAW":return e.value}}function g(e,r,i){return new Promise(s=>{const o=U();e.addEventListener("message",function a(n){!n.data||!n.data.id||n.data.id!==o||(e.removeEventListener("message",a),s(n.data))}),e.start&&e.start(),e.postMessage(Object.assign({id:o},r),i)})}function U(){return new Array(4).fill(0).map(()=>Math.floor(Math.random()*Number.MAX_SAFE_INTEGER).toString(16)).join("-")}const W=async()=>WebAssembly.validate(new Uint8Array([0,97,115,109,1,0,0,0,1,5,1,96,0,1,123,3,2,1,0,10,10,1,8,0,65,0,253,15,253,98,11])),k="eager",x="lazy",j={ssw:["simd"],minimap2:["simd"]},t={tools:[],config:{},files:[],base:{},fs:{},async init(){if(t.tools.length===0)throw"Expecting at least 1 tool.";if(new Set(t.tools.map(r=>`${r.tool}/${r.program||r.tool}`)).size!==t.tools.length)throw"Found duplicate tools; can only have each tool/program combination at most once.";if(t.base=t.tools.find(r=>r.reinit!==!0),!t.base)throw"Could not find a tool with `reinit: false` to use as the base module. To fix this issue, include the tool `base/1.0.0` when initializing Aioli.";return t.base.isBaseModule=!0,await this._setup(t.base),await this._initModules(),t._log("Ready"),!0},async _initModules(){await Promise.all(t.tools.map(this._setup)),await this._setupFS()},mount(e=[]){const r=`${t.config.dirShared}${t.config.dirData}`,i=`${t.config.dirShared}${t.config.dirMounted}`;let s=[],o=[],a=[];!Array.isArray(e)&&!(e instanceof FileList)&&(e=[e]),t._log(`Mounting ${e.length} files`);for(let n of e){if(n instanceof File||(n==null?void 0:n.data)instanceof Blob&&n.name||typeof(n==null?void 0:n.data)=="string"&&n.name)typeof(n==null?void 0:n.data)=="string"&&(n.data=new Blob([n.data],{type:"text/plain"})),s.push(n);else if(n.name&&n.url)o.push(n);else if(typeof n=="string"&&n.startsWith("http"))n={url:n,name:n.split("//").pop().replace(/\//g,"-")},o.push(n);else throw'Cannot mount file(s) specified. Must be a File, Blob, a URL string, or { name: "file.txt", data: "string" }.';a.push(n.name)}try{t.fs.unmount(i)}catch{}for(let n of o)t.fs.createLazyFile(r,n.name,n.url,!0,!0);return t.files=t.files.concat(s),t.base.module.FS.mount(t.base.module.WORKERFS,{files:t.files.filter(n=>n instanceof File),blobs:t.files.filter(n=>(n==null?void 0:n.data)instanceof Blob)},i),s.map(n=>{const c=`${i}/${n.name}`,l=`${r}/${n.name}`;try{t.fs.unlink(l)}catch{}t._log(`Creating symlink: ${l} --> ${c}`),t.fs.symlink(c,l)}),a.map(n=>`${r}/${n}`)},async exec(e,r=null){if(t._log(`Executing %c${e}%c args=${r}`,"color:darkblue; font-weight:bold",""),!e)throw"Expecting a command";let i=e;r==null&&(r=e.split(" "),i=r.shift());const s=t.tools.find(a=>{var c;let n=i;return((c=a==null?void 0:a.features)==null?void 0:c.simd)===!0&&(n=`${n}-simd`),a.program==n});if(s==null)throw`Program ${i} not found.`;s.stdout="",s.stderr="",s.loading==x&&(s.loading=k,await this._initModules());try{s.module.callMain(r)}catch(a){console.error(a)}try{s.module.FS.close(s.module.FS.streams[1]),s.module.FS.close(s.module.FS.streams[2])}catch{}s.module.FS.streams[1]=s.module.FS.open("/dev/stdout","w"),s.module.FS.streams[2]=s.module.FS.open("/dev/stderr","w");let o={stdout:s.stdout,stderr:s.stderr};return t.config.printInterleaved&&(o=s.stdout),s.reinit===!0&&await this.reinit(s.tool),o},cat(e){return t._fileop("cat",e)},ls(e){return t._fileop("ls",e)},download(e){return t._fileop("download",e)},pwd(){return t.fs.cwd()},cd(e){for(let r of t.tools)!r.module||r.module.FS.chdir(e)},mkdir(e){return t.fs.mkdir(e),!0},read({path:e,length:r,flag:i="r",offset:s=0,position:o=0}){const a=t.fs.open(e,i),n=new Uint8Array(r);return t.fs.read(a,n,s,r,o),t.fs.close(a),n},write({path:e,buffer:r,flag:i="w+",offset:s=0,position:o=0}){const a=t.fs.open(e,i);t.fs.write(a,r,s,r.length,o),t.fs.close(a)},async reinit(e){const r=t.tools.find(s=>s.tool==e),i=t.base.module.FS.cwd();Object.assign(r,r.config),r.ready=!1,await this.init(),r.isBaseModule&&this.mount(),this.cd(i)},_stdinTxt:"",_stdinPtr:0,get stdin(){return t._stdinTxt},set stdin(e=""){t._log(`Setting stdin to %c${e}%c`,"color:darkblue",""),t._stdinTxt=e,t._stdinPtr=0},async _setup(e){if(e.ready)return;if(t._log(`Setting up ${e.tool} (base = ${e.isBaseModule===!0})...`),e.config=Object.assign({},e),e.urlPrefix||(e.urlPrefix=`${t.config.urlCDN}/${e.tool}/${e.version}`),e.program||(e.program=e.tool),e.features||(e.features={},(j[e.program]||[]).includes("simd")&&(await W()?(e.program+="-simd",e.features.simd=!0):t._log(`WebAssembly SIMD is not supported in this browser; will load non-SIMD version of ${e.program}.`))),e.isBaseModule&&(e.loading=k),e.loading===x){t._log(`Will lazy-load ${e.tool}; skipping initialization.`);return}self.importScripts(`${e.urlPrefix}/${e.program}.js`),e.module=await Module({thisProgram:e.program,locateFile:(i,s)=>`${e.urlPrefix}/${i}`,stdin:()=>t._stdinPtr<t.stdin.length?t.stdin.charCodeAt(t._stdinPtr++):(t.stdin="",null),print:i=>{t.config.printStream?postMessage({type:"biowasm",value:{stdout:i}}):e.stdout+=i+`
`},printErr:i=>{const s=t.config.printInterleaved?"stdout":"stderr";t.config.printStream?postMessage({type:"biowasm",value:{[s]:i}}):e[s]+=i+`
`}});const r=e.module.FS;e.isBaseModule?(t._log(`Setting up ${e.tool} with base module filesystem...`),r.mkdir(t.config.dirShared,511),r.mkdir(`${t.config.dirShared}/${t.config.dirData}`,511),r.mkdir(`${t.config.dirShared}/${t.config.dirMounted}`,511),r.chdir(`${t.config.dirShared}/${t.config.dirData}`),t.fs=r):(t._log(`Setting up ${e.tool} with filesystem...`),r.mkdir(t.config.dirShared),r.mount(e.module.PROXYFS,{root:t.config.dirShared,fs:t.fs},t.config.dirShared),r.chdir(t.fs.cwd())),e.stdout="",e.stderr="",e.ready=!0},async _setupFS(){const e=t.fs;for(let r of t.tools){if(!r.ready)continue;const i=r.module.FS,s=`/${r.tool}`,o=`${t.config.dirShared}${s}`;!i.analyzePath(s).exists||e.analyzePath(o).exists||(t._log(`Mounting ${s} onto ${t.base.tool} filesystem at ${o}`),e.mkdir(o),e.mount(t.base.module.PROXYFS,{root:s,fs:i},o))}},_fileop(e,r){t._log(`Running ${e} ${r}`);const i=t.fs.analyzePath(r);if(!i.exists)return t._log(`File ${r} not found.`),!1;switch(e){case"cat":return t.fs.readFile(r,{encoding:"utf8"});case"ls":return t.fs.isFile(i.object.mode)?t.fs.stat(r):t.fs.readdir(r);case"download":const s=new Blob([this.cat(r)]);return URL.createObjectURL(s)}return!1},_log(e){if(!t.config.debug)return;let r=[...arguments];r.shift(),console.log(`%c[WebWorker]%c ${e}`,"font-weight:bold","",...r)}};w(t)})();
",_=typeof window<"u"&&window.Blob&&new Blob([atob(T)],{type:"text/javascript;charset=utf-8"});function M(){const t=_&&(window.URL||window.webkitURL).createObjectURL(_);try{return t?new Worker(t):new Worker("data:application/javascript;base64,"+T)}finally{t&&(window.URL||window.webkitURL).revokeObjectURL(t)}}const I={urlCDN:"https://biowasm.com/cdn/v3",urlCDNStg:"https://stg.biowasm.com/cdn/v3",dirShared:"/shared",dirMounted:"/mnt",dirData:"/data",printInterleaved:!0,printStream:!1,callback:null,debug:!1,env:"prd"};class L{constructor(t,e={}){if(null==t)throw"Expecting array of tools as input to Aioli constructor.";return Array.isArray(t)||(t=[t]),e=Object.assign({},I,e),t=t.map(this._parseTool),"stg"===e.env&&(e.urlCDN=e.urlCDNStg),this.tools=t,this.config=e,null!=this.config.callback&&(this.callback=this.config.callback),delete this.config.callback,this.init()}async init(){const t=new M;this.callback&&(t.onmessage=t=>{"biowasm"===t.data.type&&this.callback(t.data.value)});const e=y(t);return e.tools=this.tools,e.config=this.config,await e.init(),e}_parseTool(t){if("string"!=typeof t)return t;const e=t.split("/");if(2!=e.length&&3!=e.length)throw"Expecting '<tool>/<version>' or '<tool>/<program>/<version>'";return{tool:e[0],program:3==e.length?e[1]:e[0],version:e[e.length-1]}}}var N=n(3629);class P{static getAvailableScales(){return Object.entries(this.scales).map((([t,e])=>t))}static getScale(t){return(0,N.vA)(!(void 0===this.scales[t]),`Scale '${t}' was not found.`),this.scales[t]}}P.scales={WimleyWhite:{"-":0,A:.17,C:-.24,D:-.07,E:-.01,F:-1.13,G:.01,H:.17,I:-.31,K:.99,L:-.56,M:-.23,N:.42,P:.45,Q:.58,R:.81,S:.13,T:.14,V:.07,W:-1.85,Y:-.94},categorial:{"-":0,A:1,C:2,D:3,E:4,F:5,G:6,H:7,I:8,K:9,L:10,M:11,N:12,P:13,Q:14,R:15,S:16,T:17,V:18,W:19,Y:20}};class ${constructor(t="categorial"){this.aa2num=P.getScale(t),this.num2aa={},Object.entries(this.aa2num).forEach((([t,e])=>this.num2aa[e]=t))}static _truncateSequence(t){let e=0,n=t.length;const i=["NH2","COOH"];if(t.startsWith(i[0])){const n=i[0].length;(0,N.vA)("-"==t[n],`Wrong sequence format: ${i[0]} without following '-' in '${t}'.`),e=n}if(t.endsWith(i[1])){const e=i[1].length+1;(0,N.vA)("-"==t[n-e],`Wrong sequence format: ${i[1]} without '-' precending in '${t}'.`),n-=e}return t.substring(e,n)}static _dropDefises(t){return t.replace(/(-)([^-]+)/g,"$2")}static clean(t){return $._dropDefises($._truncateSequence(t))}encode(t){const e=t.length,n=new Array(e).fill(0);for(let i=0;i<e;++i){const e=t[i];(0,N.vA)(e in this.aa2num,`Unknown char '${e}' found in sequence '${t}'`),n[i]=this.encodeLettter(e)}return n}encodeLettter(t){return this.aa2num[t]}decode(t){let e="";for(let n=0;n<t.length;++n){const i=t[n];(0,N.vA)(i in this.num2aa,`Unknown code '${i}' found in vector '${t}'`),e+=this.num2aa[i]}return e}}var R=n(4139);const k="input.fa",O="result.fasta";class H extends Error{element;constructor(t,e){super(t.innerText,e),this.element=t}}function G(t){return t.reduce(((t,e,n)=>t+`>sample${n+1}\n${e}\n`),"")}async function F(t,e=!1,n="",i=null,r,s,c){let h=t.toList();e&&(h=h.map((t=>$.clean(t).replace(/\-/g,""))));const u=t.length;i??=o.Column.string("Clusters",u).init("0"),i.type!=o.COLUMN_TYPE.STRING&&(i=i.convertTo(o.TYPE.STRING)),i.compact();const d=i.categories,p=i.getRawData(),m=new Array(d.length),f=new Array(d.length);for(let t=0;t<u;++t){const e=p[t];(m[e]??=[]).push(h[t]),(f[e]??=[]).push(t)}B(f,d);const g=await new L(["base/1.0.0",{tool:"kalign",version:R.b9,reinit:!0}]),y=o.Column.string(n,u);for(let t=0;t<d.length;++t){const e=G(m[t]);await g.fs.writeFile(k,e);const n=`${void 0!==r?` --gpo ${r}`:""}${void 0!==s?` --gpe ${s}`:""}${void 0!==c?` --tgpe ${c}`:""}`,i=await g.exec(`kalign ${k} -f fasta -o ${O}${n}`);console.warn(i);const o=await g.cat(O);if(!o){const t=D(i,1);throw new Error(t)}const l=new a.m(o).sequencesArray,h=f[t];for(let t=0;t<l.length;++t)y.set(h[t],l[t])}const b=t.meta.units,v=t.getTag(l.gp.alphabet);return y.meta.units=b,y.setTag(l.gp.aligned,"SEQ.MSA"),y.setTag(l.gp.alphabet,v),y.semType=o.SEMTYPE.MACROMOLECULE,y}function D(t,e){const n=[],i=/^.+ERROR : (.+)$/gm;let o;for(;null!=(o=i.exec(t))&&(void 0===e||n.length<e);)n.push(o[1]);return n.join("\n")}function B(t,e){const n=t.map(((t,e)=>[t,e])).filter((([t,e])=>1==t.length)).map((([t,e])=>e));if(n.length>0){const t=i.div([i.divText(`MSA analysis is not available on single sequence clusters #${n.length}:`),...s()(n).take(3).map((t=>{let o=e[t];return o.length>25&&(o=o.slice(0,25)+"..."),i.divText(`"${o}"${t<n.length-1?", ":"."}`)})).toArray(),...n.length>3?[i.divText("...")]:[]]);throw new H(t)}}},8152:(t,e,n)=>{"use strict";n.d(e,{GD:()=>d,ZY:()=>h});var i=n(4328),o=n(6082),r=n(2003),s=n(608),a=n(4139),l=n(6723);const c=new class{dcName="bio";async getDockerContainer(){return await i.dapi.docker.dockerContainers.filter(this.dcName).first()}},h=["mafft --auto","mafft","linsi","ginsi","einsi","fftns","fftnsi","nwns","nwnsi"],u=["AlignedSeq","AlignedSubpeptide","HELM","ID","PolymerID"];async function d(t,e,n="ginsi",i=1.53,l=0,h=null,d){const m=await c.getDockerContainer(),f=t.length;h??=o.Column.int("Clusters",f).init(0),h.type!=o.COLUMN_TYPE.STRING&&(h=h.convertTo(o.TYPE.STRING));const g=h.categories,y=h.getRawData(),b=new Array(g.length),v=new Array(g.length);for(let e=0;e<f;++e){const n=y[e],i=g[n];if(""===i)continue;const o=g.indexOf(i),r=t.get(e);r&&((b[o]??=[]).push({ID:e.toString(),HELM:r}),(v[n]??=[]).push(e))}(0,s.aZ)(v,g);const w=new Array(f);for(const t of b){const e=(await p(m.id,t,n,i,l,d)).Alignment;for(const t of e)w[parseInt(t.ID)]=Object.entries(t).filter((t=>!u.includes(t[0]))).map((t=>"-"!==t[1]?t[1]:"")).join(a.J.SEPARATOR)}const C=o.Column.fromStrings(e,w);return C.meta.units=r.Hi.SEPARATOR,C.setTag(r.gp.separator,a.J.SEPARATOR),C.setTag(r.gp.aligned,"SEQ.MSA"),C.setTag(r.gp.alphabet,r.YI.UN),C.setTag(r.gp.alphabetIsMultichar,"true"),C.semType=o.SEMTYPE.MACROMOLECULE,C}async function p(t,e,n,o,r,s){const a={method:"POST",headers:{Accept:"application/json","Content-Type":"application/json"},body:JSON.stringify(e)},c=`/align?method=${n}&gap_open=${o}&gap_extend=${r}`,h=window.performance.now(),u=await i.dapi.docker.dockerContainers.fetchProxy(t,c,a),d=window.performance.now();l._package.logger.debug(`Bio: requestAlignedObjects() dockerContainers.fetchProxy(), ET: ${d-h} ms`);const p="application/json"===u.headers.get("content-type");if(!u.ok&&p){const t=await u.json(),e=t["pepsea-error"];if(e)throw new Error(`PepSeA error: ${e}`);const n=t["datagrok-error"];if(n)throw new Error(`Datagrok error: ${n}`);throw new Error(u.statusText)}if(!u.ok&&!p){const t=await u.text();throw new Error(`Error: ${t}`)}if(!p){const t=await u.text();throw new Error(`Error: PepSeA expected JSON response, got '${t}'.`)}const m=await u.json();if("pepsea-stderr"in m){const t=m["pepsea-stderr"];s?.warning(t)}return m}},3890:(t,e,n)=>{"use strict";n.d(e,{TE:()=>h});var i=n(6082),o=n(7389),r=n(4328),s=n(1991),a=n.n(s),l=n(6723);const c=60;function h(){const t=r.shell.tv.grid,e=a().count(0).take(t.columns.length).map((e=>t.columns.byIndex(e))).filter((t=>!!t.column&&t.column.semType!==i.SEMTYPE.MACROMOLECULE)).toArray(),n=e.find((t=>-1!==t.name.toLowerCase().indexOf("id"))),s=n?[n.name]:[],h=o.input.multiChoice("Seq id columns",{value:s,items:e.map((t=>t.name))}),d=a().count(0).take(t.columns.length).map((e=>t.columns.byIndex(e))).filter((t=>{const e=t.column;return!(!e||e.semType!==i.SEMTYPE.MACROMOLECULE)&&l._package.seqHelper.getSeqHandler(e).isFasta()})).toArray(),p=d.length>0?d[0].name:[],m=o.input.choice("Seq column",{value:p,items:d.map((t=>t.name))}),f=o.input.int("FASTA line width",{value:c});o.dialog({title:"Save as FASTA"}).add(o.inputs([h,m,f])).onOK((()=>{const e=h.value?h.value.map((e=>t.columns.byName(e).column)):[],n=m.value?t.columns.byName(m.value).column:null,i=f.value??c;n||r.shell.warning("Seq column is mandatory to save as FASTA.");const o=function(t,e,n=c,i="\n"){const o=[];for(let r=0;r<e.length;r++){const s=t.map((t=>t.get(r).toString())).join("|"),a=u(e.getSplitted(r),n);o.push(`>${s}${i}`);for(const t of a)o.push(`${t}${i}`)}return"".concat(...o)}(e,l._package.seqHelper.getSeqHandler(n),i),s=document.createElement("a");s.setAttribute("href",`data:text/plain;charset=utf-8,${encodeURIComponent(o)}`),s.setAttribute("download",`${t.dataFrame.name}.fasta`),s.click()})).show()}function u(t,e=c){let n=0;const i=t.length,o=[];for(;n<i;){const i=a().count(n).take(Math.min(t.length-n,e)).map((e=>t.getOriginal(e))).toArray(),r=i.map((t=>t.length>1?`[${t}]`:t)).reduce(((t,e)=>t+e),"");o.push(r),n+=i.length}return o}},8754:(t,e,n)=>{"use strict";n.d(e,{V:()=>h});var i=n(4328),o=n(6077),r=n(2003),s=n(8312),a=n(5553),l=n(966),c=n(330);async function h(t,e,n,h,u,d,p){let m;if(n){const n=await(0,s.Q)(),i=n.getSeqHandler(e);let o,a;i.isHelm()?o=e:(a=e.name,e.name=`__${a}`,o=i.convert(r.Hi.HELM),o.name=a,t.columns.add(o,!1));try{m=await n.helmToAtomicLevel(o,!0,!0,u)}finally{o!==e&&(t.columns.remove(o.name),e.name=a)}}else{if(!(0,l.l)(e,"To Atomic Level",d)[0])return{molCol:null,warnings:["Column is not suitable"]};m=await(0,o.C4)(t,e,u,d,p)}if(m.molCol){const o=(0,c.qj)(t,e.name);m.molCol.name=o,t.columns.add(m.molCol,!0),await(0,a.Qc)(e,m.molCol,u,d,p,n),m.molCol.setTag(".sequence-src-highlight-monomers",String(h)),await i.data.detectSemanticTypes(t)}return m}},4870:(t,e,n)=>{"use strict";n.d(e,{Kd:()=>a,Ku:()=>s,me:()=>r});var i=n(4328),o=n(6082);function r(){const t=i.shell.t.columns.bySemTypeAll(o.SEMTYPE.MACROMOLECULE);return null===t?(i.shell.error("Current table does not contain macromolecules"),[]):t}function s(t,e){t.innerHTML="",t.append(e)}function a(t,e,n,i,o){const r=()=>{const o=t.col(e);o&&(o.width=n),i&&(t.props.rowHeight=i)};if(o)return void r();const s=t.onAfterDrawOverlay.subscribe((()=>{s.unsubscribe(),setTimeout((()=>{r()}))}))}},250:(t,e,n)=>{"use strict";n.d(e,{n5:()=>C,oP:()=>M});var i=n(4328),o=n(7389),r=n(6082),s=n(1757),a=n.n(s),l=n(1991),c=n.n(l),h=n(1858),u=n(2003),d=n(4326);function p(t){var e;return"string"==typeof t||t instanceof String?t:("object"==typeof t||t instanceof Object)&&"$thrownJsError"in t?p(t.$thrownJsError):t instanceof Error?null!==(e=t.stack)&&void 0!==e?e:t.message:t.toString()}var m=n(8070),f=n(7602),g=n(439),y=n(6882);var b=n(6723);function v(t,e,n){return Math.abs(t-e)<=n}var w,C,A=n(6307);HTMLCanvasElement.prototype.getCursorPosition=function(t,e){const n=this.getBoundingClientRect();return new r.Point((t.clientX-n.left)*e,(t.clientY-n.top)*e)},r.Rect.prototype.contains=function(t,e){return this.left<=t&&t<=this.right&&this.top<=e&&e<=this.bottom};class S{rowCount;value;plotValue;valueList=null;valueIdx=0;bounds;constructor(t=0,e){this.value=this.rowCount=t,this.bounds=e}push(t){this.valueList||(this.valueList=new Array(this.rowCount),this.valueIdx=0),this.valueList[this.valueIdx]=t,++this.valueIdx}aggregate(t){this.value=t(this.valueList)??0,this.valueList=null}}class x{pos;name;_label;get label(){return this._label?this._label:this.name}_freqs;sumRowCount=0;sumPlotValue;sumPlotValueForHeight;constructor(t,e,n,i){this.pos=t,this.name=e,this._freqs=n??{},i?.sumRowCount&&(this.sumRowCount=i.sumRowCount),i?.sumValueForHeight&&(this.sumPlotValue=i.sumValueForHeight),i?.label&&(this._label=i.label)}getMonomers(){return Object.keys(this._freqs)}hasMonomer(t){return t in this._freqs}getFreq(t){let e=this._freqs[t];return e||(e=this._freqs[t]=new S),e}aggregate(t){const e=function(t){return e=>{const n=function(t){let e;const n="agg";return e=t instanceof Float32Array?r.Column.fromFloat32Array(n,t):t instanceof Int32Array?r.Column.fromInt32Array(n,t):r.Column.fromList(r.COLUMN_TYPE.FLOAT,n,t),e}(e);return n.aggregate(t)}}(t);for(const[t,n]of Object.entries(this._freqs))n.aggregate(e)}getMinValue(){return Math.min(...Object.values(this._freqs).map((t=>t.value)))}calcPlotValue(t){for(const e of Object.values(this._freqs))e.plotValue=e.value-t}calcHeights(t){this.sumPlotValue=0;for(const t of Object.values(this._freqs))this.sumPlotValue+=t.plotValue;if(this.sumPlotValueForHeight=0,t===d.fH.Entropy){const t=Object.keys(this._freqs).length,e=.01*this.sumPlotValue,n=e/t;for(const t of Object.values(this._freqs)){const i=(t.plotValue+n)/(this.sumPlotValue+e);this.sumPlotValueForHeight+=-i*Math.log2(i)}}else if(t===d.fH.full)for(const[t,e]of Object.entries(this._freqs)){const t=e.plotValue/this.sumPlotValue;this.sumPlotValueForHeight+=t}}calcScreen(t,e,n,i,o,s,a,l,c){const h=i===d.fH.Entropy?n*(o-this.sumPlotValueForHeight)/o:n;let u=c*l+(n-h-1);const p=Object.entries(this._freqs).sort(((t,e)=>t[0]!==g._S&&e[0]!==g._S?e[1].value-t[1].value:t[0]===g._S&&e[0]===g._S?0:t[0]===g._S?-1:1));for(const[n,i]of p){const n=h*i.plotValue/this.sumPlotValue;i.bounds=new r.Rect((t-e)*l*s,u,a*l,n),u+=n}}render(t,e,n,i,o,r,s){for(const[a,l]of Object.entries(this._freqs))if(a!==g._S){const c=(0,u.zS)(a,s),h=l.bounds,d=h.left;let p=y.S$;r&&(p=r.getMonomerTextColor(o,a)),t.resetTransform(),t.strokeStyle="lightgray",t.lineWidth=1,t.rect(d,h.top,h.width,h.height),t.fillStyle=p,t.textAlign="left",t.font=e;const m=t.measureText(c);t.setTransform(h.width/m.width,0,0,h.height/i,d,h.top),t.fillText(c,0,-n)}}getMonomerAt(t,e){const n=Object.entries(this._freqs).find((([n,i])=>i.bounds.contains(t,e)));return n?n[0]:void 0}buildCompositionTable(t,e){if("-"in this._freqs)throw new Error("Unexpected monomer symbol '-'.");return(0,A.F)(Object.assign({},...Object.entries(this._freqs).map((([t,e])=>({[t]:e.rowCount})))),t,e)}}!function(t){t.STYLE="Style",t.BEHAVIOR="Behavior",t.LAYOUT="Layout",t.DATA="Data"}(w||(w={})),function(t){t.sequenceColumnName="sequenceColumnName",t.valueAggrType="valueAggrType",t.valueColumnName="valueColumnName",t.startPositionName="startPositionName",t.endPositionName="endPositionName",t.skipEmptySequences="skipEmptySequences",t.skipEmptyPositions="skipEmptyPositions",t.shrinkEmptyTail="shrinkEmptyTail",t.backgroundColor="backgroundColor",t.positionHeight="positionHeight",t.positionWidth="positionWidth",t.verticalAlignment="verticalAlignment",t.horizontalAlignment="horizontalAlignment",t.fixWidth="fixWidth",t.fitArea="fitArea",t.minHeight="minHeight",t.maxHeight="maxHeight",t.maxMonomerLetters="maxMonomerLetters",t.showPositionLabels="showPositionLabels",t.positionMarginState="positionMarginState",t.positionMargin="positionMargin",t.filterSource="filterSource"}(C||(C={}));const E=d.Fo;var T;!function(t){t[t.None=0]="None",t[t.Render=1]="Render",t[t.Layout=1]="Layout",t[t.Freqs=2]="Freqs"}(T||(T={}));const _=new class{render=20};class M extends r.JsViewer{static residuesSet="nucleotides";viewed=!1;seqHelper;seqHandler;initialized=!1;monomerLib=null;host;msgHost;canvas;slider;textBaseline;seqCol=null;positions=[];visibleSlider=!1;allowResize=!0;turnOfResizeForOneSetValue=!1;sequenceColumnName;valueAggrType;valueColumnName;skipEmptySequences;skipEmptyPositions;positionWidth;_positionWidth;_positionWidthWithMargin;get positionWidthWithMargin(){return this._positionWidthWithMargin}minHeight;backgroundColor=4294967295;maxHeight;maxMonomerLetters;showPositionLabels;positionMarginState;positionMargin=0;_positionMargin;startPositionName;endPositionName;fixWidth;verticalAlignment;horizontalAlignment;fitArea;shrinkEmptyTail;positionHeight;filterSource;positionNames=[];positionLabels=void 0;startPosition=-1;endPosition=-1;error=null;get Length(){return this.skipEmptyPositions?this.positions.length:this.startPosition<=this.endPosition?this.endPosition-this.startPosition+1:0}get positionMarginValue(){return this.positionMarginState===d.mH.AUTO&&!0===this.seqHandler.getAlphabetIsMultichar()||this.positionMarginState===d.mH.ON?this.positionMargin:0}constructor(){super(),this.seqHelper=b._package.seqHelper,this.textBaseline="top",this.seqHandler=null,this.sequenceColumnName=this.string(C.sequenceColumnName,E.sequenceColumnName,{category:w.DATA,semType:r.SEMTYPE.MACROMOLECULE,description:"Column with sequences"});const t=[r.AGG.KEY,r.AGG.PIVOT,r.AGG.MISSING_VALUE_COUNT,r.AGG.SKEW,r.AGG.KURT,r.AGG.SELECTED_ROWS_COUNT],e=Object.values(r.AGG).filter((e=>!t.includes(e)));this.valueColumnName=this.string(C.valueColumnName,E.valueColumnName,{category:w.DATA,columnTypeFilter:"numerical",description:"Column with values used in aggregation for position heights"}),this.valueAggrType=this.string(C.valueAggrType,E.valueAggrType,{category:w.DATA,choices:e,description:"Aggregation method for value column"}),this.startPositionName=this.string(C.startPositionName,E.startPositionName,{category:w.DATA,description:"Position or column name for start position. If column with given name is found, its values will be used as start position. If number is supplied, it will be used as start position of WebLogo."}),this.endPositionName=this.string(C.endPositionName,E.endPositionName,{category:w.DATA,description:"Position or column name for end position. If column with given name is found, its values will be used as end position. If number is supplied, it will be used as end position of WebLogo."}),this.skipEmptySequences=this.bool(C.skipEmptySequences,E.skipEmptySequences,{category:w.DATA,description:"Skip sequences which are empty in all positions"}),this.skipEmptyPositions=this.bool(C.skipEmptyPositions,E.skipEmptyPositions,{category:w.DATA,description:"Skip positions which are empty in all sequences"}),this.shrinkEmptyTail=this.bool(C.shrinkEmptyTail,E.shrinkEmptyTail,{category:w.DATA,description:"Skip empty tail (if found for all sequences within a subset) in WebLogo"}),this.backgroundColor=this.int(C.backgroundColor,E.backgroundColor,{category:w.STYLE,description:"Background color of WebLogo canvas"}),this.positionHeight=this.string(C.positionHeight,E.positionHeight,{category:w.STYLE,choices:Object.values(d.fH),description:"Monomer-Position height mode. Entropy of 100%(full height)"}),this._positionWidth=this.positionWidth=this.float(C.positionWidth,E.positionWidth,{category:w.LAYOUT,editor:"slider",min:4,max:100,description:'Width of position in WebLogo. If "Fit Area" is enabled, width will be calculated to fit horizontal space'}),this.verticalAlignment=this.string(C.verticalAlignment,E.verticalAlignment,{category:w.LAYOUT,choices:Object.values(d.Lp)}),this.horizontalAlignment=this.string(C.horizontalAlignment,E.horizontalAlignment,{category:w.LAYOUT,choices:Object.values(d.P4)}),this.fixWidth=this.bool(C.fixWidth,E.fixWidth,{category:w.LAYOUT,userEditable:!1}),this.fitArea=this.bool(C.fitArea,E.fitArea,{category:w.LAYOUT,description:"Fit WebLogo to the horizontal space. Calculates position width as maximum between provided width value and value needed to fit whole horizontal space."}),this.minHeight=this.int(C.minHeight,E.minHeight,{category:w.LAYOUT,editor:"slider",min:10,max:250,description:"Minimum height of WebLogo"}),this.maxHeight=this.int(C.maxHeight,E.maxHeight,{category:w.LAYOUT,editor:"slider",min:25,max:Math.max(window.innerHeight??0,1e3),nullable:!0,description:"Maximum height of WebLogo"}),this.maxMonomerLetters=this.int(C.maxMonomerLetters,E.maxMonomerLetters,{category:w.LAYOUT,editor:"slider",min:1,max:40,description:"Maximum monomer letters to display before shortening"}),this.showPositionLabels=this.bool(C.showPositionLabels,E.showPositionLabels,{category:w.LAYOUT,description:"Show position labels on top of the weblogo"}),this.positionMarginState=this.string(C.positionMarginState,E.positionMarginState,{category:w.LAYOUT,choices:Object.values(d.mH),description:"Calculate optimal margins between positions or turn it on/off"});let n=0;"auto"===this.positionMarginState&&(n=4),this.positionMargin=this.int(C.positionMargin,n,{category:w.LAYOUT,min:0,max:25,description:"Margin between positions in WebLogo"}),this.filterSource=this.string(C.filterSource,E.filterSource,{category:w.BEHAVIOR,choices:Object.values(d.lT),description:"Data source for weblogo. Selected or filtered rows."}),this.slider=o.rangeSlider(0,100,0,20,!1,{style:"barbell"}),this.canvas=o.canvas(),this.canvas.classList.value="bio-wl-canvas",this.canvas.style.width="100%",(0,b.getMonomerLibHelper)().then((t=>{this.monomerLib=t.getMonomerLib(),this.render(T.Render,"monomerLib"),this.subs.push(this.monomerLib.onChanged.subscribe((()=>{this.render(T.Render,"monomerLib changed")})))})),this.viewSyncer=new f.g(b._package.logger)}static viewerCounter=-1;viewerId=++M.viewerCounter;toLog(){return`WebLogoViewer<${this.viewerId}>`}setData(){const t=`${this.toLog()}.setData()`;b._package.logger.debug(`${t}, in`),this.viewSyncer.sync(`${t}`,(async()=>{if(!this.setDataInProgress){this.setDataInProgress=!0;try{this.viewed&&(this.renderRequestSub.unsubscribe(),await this.destroyView(),this.viewed=!1),this.updateSeqCol(),this.updateEditors(),this.viewed||(await this.buildView(),this.viewed=!0)}finally{this.setDataInProgress=!1}}})),b._package.logger.debug(`${t}, out`)}viewSyncer;setDataInProgress=!1;viewSubs=[];async destroyView(){for(const t of this.viewSubs)t.unsubscribe();this.viewSubs=[];const t=this.dataFrame?"data":"null";b._package.logger.debug(`${this.toLog()}.destroyView( dataFrame = ${t} ) start`),this.host.remove(),this.msgHost=void 0,this.host=void 0,b._package.logger.debug(`${this.toLog()}.destroyView() end`)}async buildView(){const t=this.dataFrame?"data":"null";b._package.logger.debug(`${this.toLog()}.buildView( dataFrame = ${t} ) start`),window.devicePixelRatio,this.viewSubs.push(r.debounce(this.renderRequest,_.render).subscribe(this.renderRequestOnDebounce.bind(this))),this.helpUrl="/help/visualize/viewers/web-logo.md",this.msgHost=o.div("No message",{classes:"bio-wl-msg"}),this.msgHost.style.display="none",this.canvas=o.canvas(),this.canvas.style.width="100%",this.slider.root.style.position="absolute",this.slider.root.style.zIndex="999",this.slider.root.style.display="none",this.slider.root.style.height="0.7em",this.visibleSlider=!1,this.host=o.div([this.msgHost,this.canvas],{classes:"bio-wl-host",style:{display:"flex",flexDirection:"row",flexGrow:"0",flexWrap:"wrap"}}),this.root.append(this.host),this.root.append(this.slider.root),this.error&&(this.msgHost.innerText=this.error.message,o.tooltip.bind(this.msgHost,this.error.stack),this.msgHost.style.setProperty("display",null)),this.dataFrame&&(this.viewSubs.push(this.dataFrame.filter.onChanged.subscribe(this.dataFrameFilterOnChanged.bind(this))),this.viewSubs.push(this.dataFrame.selection.onChanged.subscribe(this.dataFrameSelectionOnChanged.bind(this)))),this.viewSubs.push(o.onSizeChanged(this.root).subscribe(this.rootOnSizeChanged.bind(this))),this.viewSubs.push(this.slider.onValuesChanged.subscribe(this.sliderOnValuesChanged.bind(this))),this.viewSubs.push((0,h.fromEvent)(this.canvas,"mousemove").subscribe(this.canvasOnMouseMove.bind(this))),this.viewSubs.push((0,h.fromEvent)(this.canvas,"mousedown").subscribe(this.canvasOnMouseDown.bind(this))),this.viewSubs.push((0,h.fromEvent)(this.canvas,"wheel").subscribe(this.canvasOnWheel.bind(this))),this.render(T.Freqs,"buildView"),b._package.logger.debug(`${this.toLog()}.buildView() end`)}lastSize={width:-1,height:-1};rootOnSizeChanged(t){const e={width:t.target.clientWidth,height:t.target.clientHeight};this.lastSize.width==e.width&&this.lastSize.height==e.height||(b._package.logger.debug(`${this.toLog()}.rootOnSizeChanged(), ${JSON.stringify(e)}, start `),this.render(T.Layout,"rootOnSizeChanged")),this.lastSize=e}updateEditors(){this.props.getProperty(C.valueColumnName).choices=c()(this.dataFrame.columns.numerical).map((t=>t.name)).toArray()}updateSeqCol(){if(this.dataFrame&&(this.seqCol=this.sequenceColumnName?this.dataFrame.col(this.sequenceColumnName):null,null==this.seqCol&&(this.seqCol=(0,u.mn)(this.dataFrame),this.sequenceColumnName=this.seqCol?this.seqCol.name:null),this.seqCol)){try{this.seqHandler=this.seqHelper.getSeqHandler(this.seqCol),this.render(T.Freqs,"updateSeqCol()"),this.error=null}catch(t){throw this.seqCol=null,this.error=t instanceof Error?t:new Error(t.toString()),t}this.seqCol||(this.seqHandler=null,this.positionNames=[],this.positionLabels=[],this.startPosition=-1,this.endPosition=-1)}}getFilter(){let t;switch(this.filterSource){case d.lT.Filtered:t=this.dataFrame.filter;break;case d.lT.Selected:t=0===this.dataFrame.selection.trueCount?this.dataFrame.filter:this.dataFrame.selection}return t}setSliderVisibility(t){t?(this.slider.root.style.display="inherit",this.visibleSlider=!0):(this.slider.root.style.display="none",this.visibleSlider=!1)}calcLayout(t){this.host&&this.canvas&&this.slider&&(this.host.classList.remove("bio-wl-fixWidth","bio-wl-fitArea"),this.canvas.classList.remove("bio-wl-fixWidth","bio-wl-fitArea"),this._positionWidth=this.positionWidth,this._positionMargin=this.positionMargin,this._positionWidthWithMargin=this._positionWidth+this.positionMarginValue,this.fixWidth?this.calcLayoutFixWidth(t):this.calcLayoutNoFitArea(t),this.slider.root.style.width=`${this.host.clientWidth}px`)}calcLayoutFixWidth(t){if(!this.host||!this.canvas||!this.slider)return;this.host.classList.add("bio-wl-fixWidth"),this.canvas.classList.add("bio-wl-fitArea");const e=this._positionWidthWithMargin*this.Length,n=Math.min(Math.max(this.minHeight,this.root.clientHeight),this.maxHeight??this.root.clientHeight);this.host.style.justifyContent=d.P4.LEFT,this.host.style.removeProperty("margin-left"),this.host.style.removeProperty("margin-top"),this.host.style.width=this.canvas.style.width=`${e}px`,this.host.style.height=this.canvas.style.height=`${n}px`,this.host.style.left=this.canvas.style.left="0",this.host.style.top=this.canvas.style.top="0",this.host.style.setProperty("overflow","hidden","important"),this.slider.root.style.display="none",this.slider.setValues(0,Math.max(0,this.Length-1),0,Math.max(0,this.Length-1)),this.canvas.width=e*t,this.canvas.height=n*t}calcLayoutNoFitArea(t){if(!this.host||!this.canvas||!this.slider)return;let e=this._positionWidthWithMargin*this.Length,n=Math.min(this.root.clientWidth,e);this.fitArea&&e<this.root.clientWidth&&(this._positionWidth=Math.floor(this._positionWidth*this.root.clientWidth/e),this._positionWidthWithMargin=this._positionWidth+this.positionMarginValue,e=this._positionWidthWithMargin*this.Length,n=Math.min(this.root.clientWidth,e));const i=Math.min(Math.max(this.minHeight,this.root.clientHeight),this.maxHeight??this.root.clientHeight);this.canvas.style.width=`${n}px`,this.canvas.style.height=`${i}px`,this.host.style.width=`${this.root.clientWidth}px`,this.host.style.height=`${this.root.clientHeight}px`,this.host.style.justifyContent=this.horizontalAlignment,this.host.style.alignContent=this.verticalAlignment===d.Lp.TOP?"start":this.verticalAlignment===d.Lp.MIDDLE?"center":this.verticalAlignment===d.Lp.BOTTOM?"end":"inherit",this.root.clientHeight<this.minHeight&&(this.host.style.alignContent="start",this.host.style.width=`${n+8}px`);const o=e>n;if(this.setSliderVisibility(o),o){this.slider.root.style.removeProperty("display"),this.host.style.justifyContent="left",this.host.style.height=this.root.clientHeight-this.slider.root.offsetHeight+"px",this.canvas.style.height=i-this.slider.root.offsetHeight+"px",this.slider.root.style.top=`${this.host.offsetHeight}px`;let t=Math.min(Math.max(0,this.slider.min),this.Length-.001),e=Math.min(Math.max(0,this.slider.max),this.Length-.001);const n=this.canvas.clientWidth/this._positionWidthWithMargin;e=Math.min(Math.max(t,0)+n,this.Length-.001),t=Math.max(0,Math.min(e,this.Length-.001)-n),this.safeUpdateSlider(0,Math.max(this.Length-.001),t,e)}else this.safeUpdateSlider(0,Math.max(0,this.Length-.001),0,Math.max(0,this.Length-.001));this.canvas.width=n*t,this.canvas.height=i*t}calcLayoutFitArea(t){if(!this.host||!this.canvas||!this.slider)return;const e=this._positionWidth*this.Length,n=Math.min(Math.max(this.minHeight,this.root.clientHeight),this.maxHeight??this.root.clientHeight),i=e>0?(this.root.clientWidth-this.positionMarginValue*this.Length)/e:0,o=this.root.clientHeight/n,r=Math.max(1,Math.min(i,o));this._positionWidth=this.positionWidth*r,this._positionWidthWithMargin=this._positionWidth+this.positionMarginValue;const s=(this._positionWidth+this.positionMarginValue)*this.Length,a=r*n,l=Math.min(this.root.clientWidth,s);this.canvas.style.width=`${l}px`,this.canvas.style.height=`${a}px`,this.host.style.width=`${l}px`,this.host.style.height=`${this.root.clientHeight}px`,this.host.style.justifyContent=this.horizontalAlignment,this.host.style.alignContent=this.verticalAlignment===d.Lp.TOP?"start":this.verticalAlignment===d.Lp.MIDDLE?"center":this.verticalAlignment===d.Lp.BOTTOM?"end":"inherit",this.root.clientHeight<this.minHeight&&(this.host.style.alignContent="start",this.host.style.width=`${l+6}px`),this.host.style.width=`${this.host}px`;const c=s>l;if(this.setSliderVisibility(c),c){this.slider.root.style.removeProperty("display"),this.host.style.justifyContent="left",this.host.style.height=this.root.clientHeight-this.slider.root.offsetHeight+"px",this.slider.root.style.top=`${this.host.offsetHeight}px`;let t=Math.min(Math.max(0,this.slider.min),this.Length-.001),e=Math.min(Math.max(0,this.slider.max),this.Length-.001);const n=this.root.clientWidth/this._positionWidthWithMargin;e=Math.min(Math.max(t,0)+n,this.Length-.001),t=Math.max(0,Math.min(e,this.Length-.001)-n),this.safeUpdateSlider(0,Math.max(0,this.Length-.001),t,e)}else this.safeUpdateSlider(0,Math.max(0,this.Length-.001),0,Math.max(0,this.Length-.001));this.canvas.width=l*t,this.canvas.height=a*t}safeUpdateSlider(t,e,n,i){v(t,this.slider.minRange,.1)&&v(e,this.slider.maxRange,.1)&&v(n,this.slider.min,.1)&&v(i,this.slider.max,.1)||this.slider.setValues(t,e,n,i)}onPropertyChanged(t){switch(super.onPropertyChanged(t),t.name){case C.sequenceColumnName:this.updateSeqCol();break;case C.sequenceColumnName:case C.startPositionName:case C.endPositionName:case C.filterSource:case C.shrinkEmptyTail:case C.skipEmptyPositions:case C.positionHeight:case C.valueColumnName:case C.valueAggrType:this.render(T.Freqs,`onPropertyChanged( ${t.name} )`);break;case C.minHeight:case C.maxHeight:case C.maxMonomerLetters:case C.positionWidth:case C.showPositionLabels:case C.fixWidth:case C.fitArea:case C.horizontalAlignment:case C.verticalAlignment:case C.positionMargin:case C.positionMarginState:this.render(T.Layout,`onPropertyChanged(${t.name})`);break;case C.backgroundColor:this.render(T.Render,`onPropertyChanged(${t.name})`)}}onTableAttached(){b._package.logger.debug(`${this.toLog()}.onTableAttached(), `),super.onTableAttached(),this.setData()}detach(){const t=`${this.toLog()}.detach()`;b._package.logger.debug(`${t}, in`);const e=super.detach.bind(this);this.viewSyncer.sync(`${t}`,(async()=>{this.setDataInProgress||(this.viewed&&(await this.destroyView(),this.viewed=!1),e())})),b._package.logger.debug(`${t}, out`)}_onSizeChanged=new h.Subject;get onSizeChanged(){return this._onSizeChanged}_onFreqsCalculated=new h.Subject;get onFreqsCalculated(){return this._onFreqsCalculated}_onLayoutCalculated=new h.Subject;get onLayoutCalculated(){return this._onLayoutCalculated}getMonomer(t,e){const n=t.x,i=Math.floor(t.x/(this._positionWidthWithMargin*e)+Math.floor(this.slider.min)),o=this.positions[i];if(!o)return[null,null,null];const r=o.getMonomerAt(n,t.y);return void 0===r?[o,null,null]:[o,r,o.getFreq(r)]}_nullSequence(t="X"){return this.skipEmptySequences?"":new Array(this.Length).fill(t).join("")}_removeEmptyPositions(){this.skipEmptyPositions&&(this.positions=c()(this.positions).filter((t=>!t.hasMonomer(g._S)||t.getFreq(g._S).rowCount!==t.sumRowCount)).toArray())}requestedRenderLevel=T.Freqs;renderRequest=new h.Subject;renderRequestSub;render(t,e){b._package.logger.debug(`${this.toLog()}.render( recalcLevelVal=${t}, reason='${e}' )`),this.requestedRenderLevel=Math.max(this.requestedRenderLevel,t),this.renderRequest.next(this.requestedRenderLevel)}async renderInt(t){if(b._package.logger.debug(`${this.toLog()}.render.renderInt( renderLevel=${t} ), start `),this.msgHost&&(this.msgHost.style.display="none"),!this.seqCol||!this.dataFrame||null==this.host||null==this.slider)return;const e=window.devicePixelRatio,n=this.showPositionLabels?12:0;if(t>=T.Freqs&&(()=>{if(b._package.logger.debug(`${this.toLog()}.render.calculateFreqsInt(), start `),!this.host||!this.seqCol||!this.dataFrame)return;const t=this.seqCol.getTag(u.gp.positionNames),e=this.seqCol.getTag(u.gp.positionLabels);let n;!t&&this.endPositionName&&/\d+/.test(this.endPositionName)?n=Number(this.endPositionName):t&&this.endPositionName&&(n=t.split(u.z1).indexOf(this.endPositionName),n=-1!==n?n:void 0);const i=this.getFilter(),o=0===i.trueCount?this.seqHandler.maxLength:c().count(0).take(this.seqHandler.length).map((t=>{const e=this.seqHandler.getSplitted(t,n);return i.get(t)&&e?e.length:0})).reduce(((t,e)=>Math.max(t,e)),0);this.positionNames=t?t.split(u.z1).map((t=>t.trim())):[...Array(o).keys()].map((t=>`${t+1}`)),this.positionLabels=e?e.split(u.z1).map((t=>t.trim())):void 0,this.startPosition=this.startPositionName&&this.positionNames&&this.positionNames.includes(this.startPositionName)?this.positionNames.indexOf(this.startPositionName):0,this.endPosition=this.endPositionName&&this.positionNames&&this.positionNames.includes(this.endPositionName)?this.positionNames.indexOf(this.endPositionName):o-1;const s=this.startPosition<=this.endPosition?this.endPosition-this.startPosition+1:0;this.seqHandler=this.seqHelper.getSeqHandler(this.seqCol);const a=this.startPosition<=this.endPosition?this.endPosition-this.startPosition+1:0;this.positions=new Array(a);for(let t=0;t<s;t++){const e=this.positionNames[this.startPosition+t],n=this.positionLabels?this.positionLabels[this.startPosition+t]:void 0;this.positions[t]=new x(this.startPosition+t,e,{},{label:n})}this.dataFrame.rowCount;const l=i.getSelectedIndexes();for(let t=0;t<s;++t){for(const e of l){const n=this.seqHandler.getSplitted(e),i=t+this.startPosition<n.length?n.getCanonical(this.startPosition+t):this.seqHandler.defaultGapOriginal,o=this.seqHandler.defaultGapOriginal===i?g._S:i,r=this.positions[t],s=r.getFreq(o);++r.sumRowCount,s.value=++s.rowCount}if(this.valueAggrType===r.AGG.TOTAL_COUNT)continue;let e=null;try{e=this.dataFrame.getCol(this.valueColumnName),e.matches("numerical")||(e=null)}catch{e=null}if(e){for(const n of l){const i=this.seqHandler.getSplitted(n),o=t+this.startPosition<i.length?i.getCanonical(this.startPosition+t):this.seqHandler.defaultGapOriginal,r=this.seqHandler.defaultGapOriginal===o?g._S:o,s=e.get(n);this.positions[t].getFreq(r).push(s)}this.positions[t].aggregate(this.valueAggrType)}}const h=this.valueAggrType===r.AGG.TOTAL_COUNT?0:Math.min(0,Math.min(...this.positions.map((t=>t.getMinValue()))));for(let t=0;t<s;++t)this.positions[t].calcPlotValue(h),this.positions[t].calcHeights(this.positionHeight);this._removeEmptyPositions(),this._onFreqsCalculated.next()})(),this.calcLayout(e),-1===this.startPosition)return;const o=Math.max(Math.floor(this.slider.min),0),s=Math.min(this.positions.length-1,Math.floor(this.slider.max));t>=T.Layout&&((t,e,n,o)=>{b._package.logger.debug(`${this.toLog()}.render.calculateLayoutInt(), start `);const s=this.canvas.height-o*n;let a;if(this.valueAggrType===r.AGG.TOTAL_COUNT){const t=this.seqHandler.getAlphabetSize();this.positionHeight==d.fH.Entropy&&null==t&&i.shell.error("WebLogo: alphabet is undefined."),a=Math.log2(t)}else a=Math.max(...c().count(t).takeWhile((t=>t<=e)).map((t=>this.positions[t].sumPlotValueForHeight)));for(let i=t;i<=e;++i)i in this.positions?this.positions[i].calcScreen(i,this.slider.min,s,this.positionHeight,a,this._positionWidthWithMargin,this._positionWidth,n,o):b._package.logger.warning(`${this.toLog()}.render.calculateLayoutInt() this.positions.length = ${this.positions.length}, jPos = ${i}`);b._package.logger.debug(`${this.toLog()}.render.calculateLayoutInt(), end `),this._onLayoutCalculated.next()})(o,s,window.devicePixelRatio,n);const a=this.canvas.getContext("2d");if(a){a.save();try{this.Length,a.resetTransform(),a.fillStyle=function(t){const e=r.Color.a(t);return`#${(16777215&t).toString(16).padStart(6,"0")}`+e.toString(16).padStart(2,"0")}(this.backgroundColor),a.fillRect(0,0,this.canvas.width,this.canvas.height),a.textBaseline=this.textBaseline;const t=10*e;a.resetTransform(),a.fillStyle="black",a.textAlign="center",a.font=`${t.toFixed(1)}px Roboto, Roboto Local, sans-serif`,n>0&&this.positions.length>0&&function(t,e,n,i,o,r,s,a){t.save();try{t.textAlign="center";let l=null,c=null;for(let e=Math.floor(s);e<=Math.floor(a);e++){const n=r[e],i=t.measureText(n.name),o=i.actualBoundingBoxDescent-i.actualBoundingBoxAscent;l=null===l?i.width:Math.max(l,i.width),c=null===c?o:Math.max(c,o)}const h=l<i*e-2?1:(i*e-2)/l;for(let l=Math.floor(s);l<=Math.floor(a);l++){const a=r[l],u=(l-s)*n*e+i*e/2,d=(o*e-c)/2;t.setTransform(h,0,0,1,u,d),t.measureText(a.label),t.fillText(a.label,0,0)}}finally{t.restore()}}(a,e,this._positionWidthWithMargin,this._positionWidth,n,this.positions,this.slider.min,this.slider.max);const i="16px Roboto, Roboto Local, sans-serif",l=.25,c=12.2,h=this.seqHandler.defaultBiotype;for(let t=o;t<=s;t++)this.positions[t].render(a,i,l,c,h,this.monomerLib,this.maxMonomerLetters)}finally{a.restore()}b._package.logger.debug(`${this.toLog()}.render.renderInt( recalcLevel=${t} ), end`)}}renderRequestOnDebounce(t){const e=`${this.toLog()}.renderRequestOnDebounce()`;"HTML"!==a()(this.root).offsetParent().get()[0]?.tagName?(this.requestedRenderLevel=T.None,this.viewSyncer.sync(e,(async()=>{await this.renderInt(t)}))):b._package.logger.warning(`${e}, $(this.root).offsetParent() is the 'HTML' tag.`)}_lastWidth;_lastHeight;sliderOnValuesChanged(t){try{const t={minRange:this.slider.minRange,min:this.slider.min,max:this.slider.max,maxRange:this.slider.maxRange};if(this.canvas&&this.canvas.offsetWidth>0&&(this._positionWidthWithMargin??0)>0){const e=t.max-t.min,n=this.canvas.offsetWidth/e-this.positionMarginValue;v(n,this.positionWidth,.1)?this.render(T.Layout,"sliderOnValuesChanged"):this.getProperty(C.positionWidth)?.set(this,n)}}catch(t){const e=p(t);b._package.logger.error(`${this.toLog()}.sliderOnValuesChanged() error:\n`+e)}}dataFrameFilterOnChanged(t){b._package.logger.debug(`${this.toLog()}.dataFrameFilterChanged()`);try{this.filterSource===d.lT.Filtered&&this.render(T.Freqs,"dataFrameFilterOnChanged")}catch(t){const e=p(t);b._package.logger.error(`${this.toLog()}.dataFrameFilterOnChanged() error:\n`+e)}}dataFrameSelectionOnChanged(t){b._package.logger.debug(`${this.toLog()}.dataFrameSelectionOnChanged()`);try{this.filterSource===d.lT.Selected&&this.render(T.Freqs,"dataFrameSelectionOnChanged")}catch(t){const e=p(t);b._package.logger.error(`${this.toLog()}.dataFrameSelectionOnChanged() error:\n`+e)}}canvasOnMouseMove(t){if(!this.monomerLib||!this.seqHandler)return;const e=window.devicePixelRatio;try{const n=t,i=this.canvas.getCursorPosition(n,e),[s,a]=this.getMonomer(i,e),l=this.showPositionLabels?12*e:0;if(null!==s&&null===a&&0<=i.y&&i.y<=l){const t=[o.divText(`Position ${s.label}`)];if(this.valueAggrType===r.AGG.TOTAL_COUNT){const e=this.seqHandler.defaultBiotype;t.push(s.buildCompositionTable(e,this.monomerLib))}const e=o.divV(t);e.style.maxHeight="80vh",o.tooltip.show(e,n.x+16,n.y+16)}else if(null!==s&&a&&this.dataFrame&&this.seqCol&&this.seqHandler){const t=s.getFreq(a),e=[o.div(`${a}`),o.div(`${t.rowCount} rows`)];this.valueAggrType!==r.AGG.TOTAL_COUNT&&e.push(o.div(`${this.valueAggrType}: ${t.value.toFixed(3)}`));const i=o.divV(e);o.tooltip.show(i,n.x+16,n.y+16)}else o.tooltip.hide()}catch(t){const e=p(t);b._package.logger.error(`${this.toLog()}.canvasOnMouseMove() error:\n`+e)}}canvasOnMouseDown(t){try{const e=t,n=window.devicePixelRatio,[i,o]=this.getMonomer(this.canvas.getCursorPosition(e,n),n);if(null!==i&&null!==o&&this.dataFrame&&this.seqCol&&this.seqHandler){const t=r.BitSet.create(this.dataFrame.selection.length,(t=>function(t,e,n,i,o,r){const s=e.getSplitted(i),a=r.pos<s.length?s.getCanonical(r.pos):null;return null!==a&&a===o}(this.dataFrame,this.seqHandler,this.getFilter(),t,o,i)));this.dataFrame.selection.init((e=>t.get(e)))}}catch(t){const e=p(t);b._package.logger.error(`${this.toLog()}.canvasOnMouseDown() error:\n`+e)}}canvasOnWheel(t){const e=window.devicePixelRatio;try{if(!this.visibleSlider)return;const n=this.canvas.width/(this._positionWidthWithMargin*e),i=t.deltaY/100*Math.max(Math.floor(n/5),1);this.slider.scrollBy(this.slider.min+i)}catch(t){const e=p(t);b._package.logger.error(`${this.toLog()}.canvasOnWheel() error:\n`+e)}}_onRendered=new h.Subject;get onRendered(){return this._onRendered}invalidate(t){const e=`invalidate(${t?` <- ${t} `:""})`,n=`${this.toLog()}.${e}`;this.render(T.None,e),this.viewSyncer.sync(`${n}`,(async()=>{this._onRendered.next()}))}async awaitRendered(t=5e3){await(0,m.PE)(this.onRendered,(()=>{}),(()=>{this.invalidate()}),t);const e=this.viewSyncer.resetErrors();if(e.length>0)throw e[0]}}},1687:(t,e,n)=>{"use strict";n.d(e,{_i:()=>x});var i=n(7389),o=n(6082),r=n(4328),s=n(1991),a=n.n(s),l=n(1858),c=n(2003),h=n(8070),u=n(7602),d=n(4954),p=n(4574),m=n(1757),f=n.n(m),g=n(9124),y=n(9192),b=n(4870),v=n(6723);class w extends p.O{seqHelper;emptyProps=new p.n("",void 0,v._package.logger);helmEditor;_filterPanel=i.div("",{style:{cursor:"pointer"}});logger;static viewerCounter=-1;viewerId=++w.viewerCounter;viewerToLog(){return`HelmBioFilter<${this.viewerId}>`}get type(){return"HelmBioFilter"}constructor(t){super(),this.seqHelper=t,this.logger=v._package.logger}viewSubs=[];async detach(){await super.detach();for(const t of this.viewSubs)t.unsubscribe()}async attach(){this.viewerToLog();try{const t=await(0,g.b2)();let e,n;this.helmEditor=t.createHelmWebEditor(),this.logger.warning("TEST: HelmBioFilter.init().sync() waitForElementInDom waiting..."),await i.tools.waitForElementInDom(this._filterPanel),this.logger.warning("TEST: HelmBioFilter.init().sync() waitForElementInDom ready"),this.updateFilterPanel(),this.viewSubs.push((0,l.fromEvent)(this._filterPanel,"click").subscribe((()=>{e=i.div(),n=t.createWebEditorApp(e,this.props.substructure),i.dialog({showHeader:!1,showFooter:!0}).add(e).onOK((()=>{try{const t=n.canvas.getHelm(!0).replace(/<\/span>/g,"").replace(/<span style='background:#bbf;'>/g,"");this.props=new p.n(t,void 0,v._package.logger)}catch(t){this.logger.error(t)}finally{f()(e).empty(),e=null,n=null}})).onCancel((()=>{f()(e).empty(),e=null,n=null})).show({modal:!0,fullScreen:!0})}))),this.viewSubs.push(i.onSizeChanged(this._filterPanel).subscribe((t=>{try{if(n){const t=n.canvas.getHelm(!0).replace(/<\/span>/g,"").replace(/<span style='background:#bbf;'>/g,"");this.updateFilterPanel(t)}}catch(t){const[e,n]=(0,y.AP)(t);this.logger.error(e,void 0,n)}})))}catch(t){const[e,n]=(0,y.AP)(t),o=this._filterPanel;o.innerText="error",o.classList.add("d4-error"),i.tooltip.bind(o,e)}}applyProps(){this.helmEditor&&this.updateFilterPanel(this.props.substructure)}get filterPanel(){return this._filterPanel}updateFilterPanel(t){if(!this.helmEditor)throw new Error("helmEditor is not created, the filter is not in dom yet");const e=this._filterPanel.parentElement.clientWidth<100?100:this._filterPanel.parentElement.clientWidth,n=e/2;if(t)(0,b.Ku)(this._filterPanel,this.helmEditor.host),this.helmEditor.editor.setHelm(t),this.helmEditor.resizeEditor(e,n);else{const t=i.divText("Click to edit","helm-substructure-filter");(0,b.Ku)(this._filterPanel,t)}}async substructureSearch(t){const e=`${this.viewerToLog()}.substructureSearch( column = <${t.name}> )`;v._package.logger.debug(`${e}, start`);try{return await(0,h.cb)(10),await(0,d.if)(this.props.substructure,t,this.seqHelper)}finally{v._package.logger.debug(`${e}, end`)}}}const C="bio-substructure-filter";class A{props;filterId;dataFrameId;columnName;bitset;constructor(t,e,n,i,o){this.props=t,this.filterId=e,this.dataFrameId=n,this.columnName=i,this.bitset=o}}class S extends p.n{separator;constructor(t,e,n){super(t,!1,n),this.separator=e,this.readOnly=!0}}class x extends o.Filter{seqHelper;logger;bioFilter=null;bitset=null;loader;notation=void 0;filterSyncer;get calculating(){return"initial"==this.loader.style.display}set calculating(t){this.loader.style.display=t?"initial":"none"}get filterSummary(){return this.bioFilter.filterSummary}get isFiltering(){return super.isFiltering&&(this.bioFilter?.isFiltering??!1)}get isReadyToApplyFilter(){return!this.calculating&&null!=this.bitset}get debounceTime(){if(null==this.column)return 1e3;const t=this.column.length;return t<500?0:t>1e4?1e3:Math.floor((t-500)/9500*1e3)}constructor(t,e){super(),this.seqHelper=t,this.logger=e,this.root=i.divV([]),this.loader=i.loader(),this.calculating=!1,this.filterSyncer=new u.g(this.logger)}static filterCounter=-1;filterId=++x.filterCounter;filterToLog(){return`BioSubstructureFilter<${this.filterId}>`}viewSubs=[];attach(t){const e=super.attach.bind(this),n=`${this.filterToLog()}.attach()`;this.filterSyncer.sync(n,(async()=>{e(t),this.column||(this.columnName?this.column=this.dataFrame.getCol(this.columnName):this.column=t.columns.bySemType(o.SEMTYPE.MACROMOLECULE)),this.seqHelper.getSeqHandler(this.column),this.columnName??=this.column?.name,this.notation??=this.column?.meta.units,this.bioFilter=this.notation===c.Hi.FASTA?new E:this.notation===c.Hi.SEPARATOR?new T(this.column.getTag(c.gp.separator)):new w(this.seqHelper),this.root.appendChild(this.bioFilter.filterPanel),this.root.appendChild(this.loader),await this.bioFilter.attach(),this.viewSubs.push(o.debounce(this.bioFilter.onChanged,this.debounceTime).subscribe(this.bioFilterOnChangedDebounced.bind(this))),this.viewSubs.push(r.events.onResetFilterRequest.subscribe(this.grokEventsOnResetFilterRequest.bind(this))),this.viewSubs.push(r.events.onCustomEvent(C).subscribe(this.filterOnSync.bind(this)))}))}detach(){const t=super.detach.bind(this),e=`${this.filterToLog()}.detach()`;this.filterSyncer.sync(e,(async()=>{for(const t of this.viewSubs)t.unsubscribe();this.viewSubs=[],t(),this.bioFilter&&this.bioFilter.detach(),this.bioFilter=null}))}filterOnSync(t){t.filterId!==this.filterId&&t.dataFrameId===this.dataFrame.id&&t.columnName===this.columnName&&(this.bioFilter.props=t.props)}applyFilter(){const t=`${this.filterToLog()}.applyFilter()`;this.logger.debug(`${t}, IN`),this.bitset&&!this.isDetached&&this.dataFrame?.filter.and(this.bitset)}saveState(){const t=`${this.filterToLog()}.saveState()`,e=super.saveState();return this.logger.debug(`${t}, super.state = ${JSON.stringify(e)}`),e.props=this.bioFilter.saveProps(),e}applyState(t){const e=`${this.filterToLog()}.applyState()`;super.applyState(t),this.filterSyncer.sync(e,(async()=>{t.props&&this.bioFilter&&(this.bioFilter.props=o.toJs(t.props??{}))}))}fireFilterSync(){const t=`${this.filterToLog()}.fireFilterSync()`;this.logger.debug(`${t}, bioFilter = ${this.bioFilter?this.bioFilter.constructor.name:"null"}`+(this.bioFilter?`, props = ${JSON.stringify(this.bioFilter.saveProps())}`:"")),r.events.fireCustomEvent(C,new A(this.bioFilter.props,this.filterId,this.dataFrame.id,this.columnName,this.bitset))}bioFilterOnChangedDebounced(){if(!this.dataFrame)return;const t=`${this.filterToLog()}.bioFilterOnChangedDebounced()`;if(this.logger.debug(`${t}, start, isFiltering = ${this.isFiltering}, props = ${JSON.stringify(this.bioFilter.saveProps())}`),!this.isFiltering)return this.bitset=null,void this.dataFrame.rows.requestFilter();a()(this.dataFrame.rows.filters).has(`${this.columnName}: ${this.filterSummary}`)||this.filterSyncer.sync(t,(async()=>{this.calculating=!0;try{this.logger.debug(`${t}, before substructureSearch`),this.bitset=await(this.bioFilter?.substructureSearch(this.column)),this.logger.debug(`${t}, after substructureSearch`),this.calculating=!1,this.fireFilterSync(),this.dataFrame?.rows.requestFilter()}finally{this.calculating=!1,this.logger.debug(`${t}, end`)}}))}grokEventsOnResetFilterRequest(){const t=`${this.filterToLog()}.grokEventsOnResetFilterRequest()`;this.logger.debug(`${t}`),this.bioFilter?.resetFilter()}_onRendered=new l.Subject;get onRendered(){return this._onRendered}invalidate(t){const e=`${this.filterToLog()}.invalidate(${t?` <- ${t} `:""})`;this.filterSyncer.sync(e,(async()=>{this._onRendered.next()}))}async awaitRendered(t=1e4){const e=`awaitRendered( ${t} )`,n=`${this.filterToLog()}.${e}`;await(0,h.cb)(10),await(0,h.PE)(this.onRendered,(()=>{this.logger.debug(`${n}, _onRendered event caught`)}),(()=>{this.invalidate(e)}),t,`${n} timeout`);const i=this.filterSyncer.resetErrors();if(i.length>0)throw i[0]}}class E extends p.O{emptyProps=new p.n("",void 0,v._package.logger);substructureInput;get type(){return"FastaBioFilter"}constructor(){super(),this.substructureInput=i.input.string("",{value:"",onValueChanged:t=>{window.setTimeout((()=>{this.props=new p.n(t,void 0,v._package.logger),this._propsChanging||this.onChanged.next()}),0)},placeholder:"Substructure"})}applyProps(){this.substructureInput.value!==this.props.substructure&&(this.substructureInput.value=this.props.substructure)}get filterPanel(){return this.substructureInput.root}get isFiltering(){return""!==this.substructureInput.value}async substructureSearch(t){return(0,d.nI)(this.props.substructure,t)}async attach(){}async detach(){await super.detach()}}class T extends p.O{emptyProps=new S("",void 0,v._package.logger);substructureInput;separatorInput;colSeparator="";get type(){return"SeparatorBioFilter"}constructor(t){super(),this.substructureInput=i.input.string("",{value:"",onValueChanged:t=>{this.props=new S(t,this.props.separator,v._package.logger),setTimeout((()=>{this._propsChanging||this.onChanged.next()}))},placeholder:"Substructure"}),this.separatorInput=i.input.string("",{value:this.colSeparator=t,onValueChanged:t=>{const e=t||"";this.props=new S(this.props.substructure,e,v._package.logger),setTimeout((()=>{this._propsChanging||this.onChanged.next()}))},placeholder:"Separator"})}applyProps(){this.substructureInput.value!==this.props.substructure&&(this.substructureInput.value=this.props.substructure);const t=this.props.separator??this.colSeparator;this.separatorInput.value!==t&&(this.separatorInput.value=t)}get filterSummary(){return this.props.separator?this.props.separator:this.colSeparator,`${this.props.substructure}, {sep}`}get isFiltering(){return""!==this.props.substructure}resetFilter(){this.props=new S("",void 0,v._package.logger)}get filterPanel(){return i.divV([this.substructureInput.root,this.separatorInput.root])}get substructure(){return this.separatorInput.value&&this.separatorInput.value!==this.colSeparator?this.substructureInput.value.replaceAll(this.separatorInput.value,this.colSeparator):this.substructureInput.value}set substructure(t){this.substructureInput.value=t}async substructureSearch(t){return(0,d.nI)(this.substructure,t,this.colSeparator)}async attach(){}async detach(){await super.detach()}}},1757:t=>{"use strict";t.exports=$},6082:t=>{"use strict";t.exports=DG},4328:t=>{"use strict";t.exports=grok},1858:t=>{"use strict";t.exports=rxjs},9713:t=>{"use strict";t.exports=rxjs.operators},7389:t=>{"use strict";t.exports=ui},1991:t=>{"use strict";t.exports=wu},8343:(t,e,n)=>{"use strict";const{normalizeIPv6:i,normalizeIPv4:o,removeDotSegments:r,recomposeAuthority:s,normalizeComponentEncoding:a}=n(4834),l=n(343);function c(t,e,n,i){const o={};return i||(t=p(h(t,n),n),e=p(h(e,n),n)),!(n=n||{}).tolerant&&e.scheme?(o.scheme=e.scheme,o.userinfo=e.userinfo,o.host=e.host,o.port=e.port,o.path=r(e.path||""),o.query=e.query):(void 0!==e.userinfo||void 0!==e.host||void 0!==e.port?(o.userinfo=e.userinfo,o.host=e.host,o.port=e.port,o.path=r(e.path||""),o.query=e.query):(e.path?("/"===e.path.charAt(0)?o.path=r(e.path):(void 0===t.userinfo&&void 0===t.host&&void 0===t.port||t.path?t.path?o.path=t.path.slice(0,t.path.lastIndexOf("/")+1)+e.path:o.path=e.path:o.path="/"+e.path,o.path=r(o.path)),o.query=e.query):(o.path=t.path,void 0!==e.query?o.query=e.query:o.query=t.query),o.userinfo=t.userinfo,o.host=t.host,o.port=t.port),o.scheme=t.scheme),o.fragment=e.fragment,o}function h(t,e){const n={host:t.host,scheme:t.scheme,userinfo:t.userinfo,port:t.port,path:t.path,query:t.query,nid:t.nid,nss:t.nss,uuid:t.uuid,fragment:t.fragment,reference:t.reference,resourceName:t.resourceName,secure:t.secure,error:""},i=Object.assign({},e),o=[],a=l[(i.scheme||n.scheme||"").toLowerCase()];a&&a.serialize&&a.serialize(n,i),void 0!==n.path&&(i.skipEscape?n.path=unescape(n.path):(n.path=escape(n.path),void 0!==n.scheme&&(n.path=n.path.split("%3A").join(":")))),"suffix"!==i.reference&&n.scheme&&o.push(n.scheme,":");const c=s(n);if(void 0!==c&&("suffix"!==i.reference&&o.push("//"),o.push(c),n.path&&"/"!==n.path.charAt(0)&&o.push("/")),void 0!==n.path){let t=n.path;i.absolutePath||a&&a.absolutePath||(t=r(t)),void 0===c&&(t=t.replace(/^\/\//u,"/%2F")),o.push(t)}return void 0!==n.query&&o.push("?",n.query),void 0!==n.fragment&&o.push("#",n.fragment),o.join("")}const u=Array.from({length:127},((t,e)=>/[^!"$&'()*+,\-.;=_`a-z{}~]/u.test(String.fromCharCode(e)))),d=/^(?:([^#/:?]+):)?(?:\/\/((?:([^#/?@]*)@)?(\[[^#/?\]]+\]|[^#/:?]*)(?::(\d*))?))?([^#?]*)(?:\?([^#]*))?(?:#((?:.|[\n\r])*))?/u;function p(t,e){const n=Object.assign({},e),r={scheme:void 0,userinfo:void 0,host:"",port:void 0,path:"",query:void 0,fragment:void 0},s=-1!==t.indexOf("%");let a=!1;"suffix"===n.reference&&(t=(n.scheme?n.scheme+":":"")+"//"+t);const c=t.match(d);if(c){if(r.scheme=c[1],r.userinfo=c[3],r.host=c[4],r.port=parseInt(c[5],10),r.path=c[6]||"",r.query=c[7],r.fragment=c[8],isNaN(r.port)&&(r.port=c[5]),r.host){const t=o(r.host);if(!1===t.isIPV4){const e=i(t.host);r.host=e.host.toLowerCase(),a=e.isIPV6}else r.host=t.host,a=!0}void 0!==r.scheme||void 0!==r.userinfo||void 0!==r.host||void 0!==r.port||void 0!==r.query||r.path?void 0===r.scheme?r.reference="relative":void 0===r.fragment?r.reference="absolute":r.reference="uri":r.reference="same-document",n.reference&&"suffix"!==n.reference&&n.reference!==r.reference&&(r.error=r.error||"URI is not a "+n.reference+" reference.");const t=l[(n.scheme||r.scheme||"").toLowerCase()];if(!(n.unicodeSupport||t&&t.unicodeSupport)&&r.host&&(n.domainHost||t&&t.domainHost)&&!1===a&&function(t){let e=0;for(let n=0,i=t.length;n<i;++n)if(e=t.charCodeAt(n),e>126||u[e])return!0;return!1}(r.host))try{r.host=URL.domainToASCII(r.host.toLowerCase())}catch(t){r.error=r.error||"Host's domain name can not be converted to ASCII: "+t}(!t||t&&!t.skipNormalize)&&(s&&void 0!==r.scheme&&(r.scheme=unescape(r.scheme)),s&&void 0!==r.host&&(r.host=unescape(r.host)),r.path&&(r.path=escape(unescape(r.path))),r.fragment&&(r.fragment=encodeURI(decodeURIComponent(r.fragment)))),t&&t.parse&&t.parse(r,n)}else r.error=r.error||"URI can not be parsed.";return r}const m={SCHEMES:l,normalize:function(t,e){return"string"==typeof t?t=h(p(t,e),e):"object"==typeof t&&(t=p(h(t,e),e)),t},resolve:function(t,e,n){const i=Object.assign({scheme:"null"},n);return h(c(p(t,i),p(e,i),i,!0),{...i,skipEscape:!0})},resolveComponents:c,equal:function(t,e,n){return"string"==typeof t?(t=unescape(t),t=h(a(p(t,n),!0),{...n,skipEscape:!0})):"object"==typeof t&&(t=h(a(t,!0),{...n,skipEscape:!0})),"string"==typeof e?(e=unescape(e),e=h(a(p(e,n),!0),{...n,skipEscape:!0})):"object"==typeof e&&(e=h(a(e,!0),{...n,skipEscape:!0})),t.toLowerCase()===e.toLowerCase()},serialize:h,parse:p};t.exports=m,t.exports.default=m,t.exports.fastUri=m},343:t=>{"use strict";const e=/^[\da-f]{8}-[\da-f]{4}-[\da-f]{4}-[\da-f]{4}-[\da-f]{12}$/iu,n=/([\da-z][\d\-a-z]{0,31}):((?:[\w!$'()*+,\-.:;=@]|%[\da-f]{2})+)/iu;function i(t){return"boolean"==typeof t.secure?t.secure:"wss"===String(t.scheme).toLowerCase()}function o(t){return t.host||(t.error=t.error||"HTTP URIs must have a host."),t}function r(t){const e="https"===String(t.scheme).toLowerCase();return t.port!==(e?443:80)&&""!==t.port||(t.port=void 0),t.path||(t.path="/"),t}const s={scheme:"http",domainHost:!0,parse:o,serialize:r},a={scheme:"ws",domainHost:!0,parse:function(t){return t.secure=i(t),t.resourceName=(t.path||"/")+(t.query?"?"+t.query:""),t.path=void 0,t.query=void 0,t},serialize:function(t){if(t.port!==(i(t)?443:80)&&""!==t.port||(t.port=void 0),"boolean"==typeof t.secure&&(t.scheme=t.secure?"wss":"ws",t.secure=void 0),t.resourceName){const[e,n]=t.resourceName.split("?");t.path=e&&"/"!==e?e:void 0,t.query=n,t.resourceName=void 0}return t.fragment=void 0,t}},l={http:s,https:{scheme:"https",domainHost:s.domainHost,parse:o,serialize:r},ws:a,wss:{scheme:"wss",domainHost:a.domainHost,parse:a.parse,serialize:a.serialize},urn:{scheme:"urn",parse:function(t,e){if(!t.path)return t.error="URN can not be parsed",t;const i=t.path.match(n);if(i){const n=e.scheme||t.scheme||"urn";t.nid=i[1].toLowerCase(),t.nss=i[2];const o=`${n}:${e.nid||t.nid}`,r=l[o];t.path=void 0,r&&(t=r.parse(t,e))}else t.error=t.error||"URN can not be parsed.";return t},serialize:function(t,e){const n=e.scheme||t.scheme||"urn",i=t.nid.toLowerCase(),o=`${n}:${e.nid||i}`,r=l[o];r&&(t=r.serialize(t,e));const s=t,a=t.nss;return s.path=`${i||e.nid}:${a}`,e.skipEscape=!0,s},skipNormalize:!0},"urn:uuid":{scheme:"urn:uuid",parse:function(t,n){const i=t;return i.uuid=i.nss,i.nss=void 0,n.tolerant||i.uuid&&e.test(i.uuid)||(i.error=i.error||"UUID is not valid."),i},serialize:function(t){const e=t;return e.nss=(t.uuid||"").toLowerCase(),e},skipNormalize:!0}};t.exports=l},4914:t=>{"use strict";t.exports={HEX:{0:0,1:1,2:2,3:3,4:4,5:5,6:6,7:7,8:8,9:9,a:10,A:10,b:11,B:11,c:12,C:12,d:13,D:13,e:14,E:14,f:15,F:15}}},4834:(t,e,n)=>{"use strict";const{HEX:i}=n(4914),o=/^(?:(?:25[0-5]|2[0-4]\d|1\d{2}|[1-9]\d|\d)\.){3}(?:25[0-5]|2[0-4]\d|1\d{2}|[1-9]\d|\d)$/u;function r(t){if(c(t,".")<3)return{host:t,isIPV4:!1};const e=t.match(o)||[],[n]=e;return n?{host:l(n,"."),isIPV4:!0}:{host:t,isIPV4:!1}}function s(t,e=!1){let n="",o=!0;for(const e of t){if(void 0===i[e])return;"0"!==e&&!0===o&&(o=!1),o||(n+=e)}return e&&0===n.length&&(n="0"),n}function a(t){if(c(t,":")<2)return{host:t,isIPV6:!1};const e=function(t){let e=0;const n={error:!1,address:"",zone:""},i=[],o=[];let r=!1,a=!1,l=!1;function c(){if(o.length){if(!1===r){const t=s(o);if(void 0===t)return n.error=!0,!1;i.push(t)}o.length=0}return!0}for(let s=0;s<t.length;s++){const h=t[s];if("["!==h&&"]"!==h)if(":"!==h)if("%"===h){if(!c())break;r=!0}else o.push(h);else{if(!0===a&&(l=!0),!c())break;if(e++,i.push(":"),e>7){n.error=!0;break}s-1>=0&&":"===t[s-1]&&(a=!0)}}return o.length&&(r?n.zone=o.join(""):l?i.push(o.join("")):i.push(s(o))),n.address=i.join(""),n}(t);if(e.error)return{host:t,isIPV6:!1};{let t=e.address,n=e.address;return e.zone&&(t+="%"+e.zone,n+="%25"+e.zone),{host:t,escapedHost:n,isIPV6:!0}}}function l(t,e){let n="",i=!0;const o=t.length;for(let r=0;r<o;r++){const s=t[r];"0"===s&&i?(r+1<=o&&t[r+1]===e||r+1===o)&&(n+=s,i=!1):(i=s===e,n+=s)}return n}function c(t,e){let n=0;for(let i=0;i<t.length;i++)t[i]===e&&n++;return n}const h=/^\.\.?\//u,u=/^\/\.(?:\/|$)/u,d=/^\/\.\.(?:\/|$)/u,p=/^\/?(?:.|\n)*?(?=\/|$)/u;t.exports={recomposeAuthority:function(t){const e=[];if(void 0!==t.userinfo&&(e.push(t.userinfo),e.push("@")),void 0!==t.host){let n=unescape(t.host);const i=r(n);if(i.isIPV4)n=i.host;else{const e=a(i.host);n=!0===e.isIPV6?`[${e.escapedHost}]`:t.host}e.push(n)}return"number"!=typeof t.port&&"string"!=typeof t.port||(e.push(":"),e.push(String(t.port))),e.length?e.join(""):void 0},normalizeComponentEncoding:function(t,e){const n=!0!==e?escape:unescape;return void 0!==t.scheme&&(t.scheme=n(t.scheme)),void 0!==t.userinfo&&(t.userinfo=n(t.userinfo)),void 0!==t.host&&(t.host=n(t.host)),void 0!==t.path&&(t.path=n(t.path)),void 0!==t.query&&(t.query=n(t.query)),void 0!==t.fragment&&(t.fragment=n(t.fragment)),t},removeDotSegments:function(t){const e=[];for(;t.length;)if(t.match(h))t=t.replace(h,"");else if(t.match(u))t=t.replace(u,"/");else if(t.match(d))t=t.replace(d,"/"),e.pop();else if("."===t||".."===t)t="";else{const n=t.match(p);if(!n)throw new Error("Unexpected dot segment condition");{const i=n[0];t=t.slice(i.length),e.push(i)}}return e.join("")},normalizeIPv4:r,normalizeIPv6:a,stringArrayToHexStripped:s}},3837:t=>{"use strict";t.exports=JSON.parse('{"$id":"https://raw.githubusercontent.com/ajv-validator/ajv/master/lib/refs/data.json#","description":"Meta-schema for $data reference (JSON AnySchema extension proposal)","type":"object","required":["$data"],"properties":{"$data":{"type":"string","anyOf":[{"format":"relative-json-pointer"},{"format":"json-pointer"}]}},"additionalProperties":false}')},7216:t=>{"use strict";t.exports=JSON.parse('{"$schema":"https://json-schema.org/draft/2020-12/schema","$id":"https://json-schema.org/draft/2020-12/meta/applicator","$vocabulary":{"https://json-schema.org/draft/2020-12/vocab/applicator":true},"$dynamicAnchor":"meta","title":"Applicator vocabulary meta-schema","type":["object","boolean"],"properties":{"prefixItems":{"$ref":"#/$defs/schemaArray"},"items":{"$dynamicRef":"#meta"},"contains":{"$dynamicRef":"#meta"},"additionalProperties":{"$dynamicRef":"#meta"},"properties":{"type":"object","additionalProperties":{"$dynamicRef":"#meta"},"default":{}},"patternProperties":{"type":"object","additionalProperties":{"$dynamicRef":"#meta"},"propertyNames":{"format":"regex"},"default":{}},"dependentSchemas":{"type":"object","additionalProperties":{"$dynamicRef":"#meta"},"default":{}},"propertyNames":{"$dynamicRef":"#meta"},"if":{"$dynamicRef":"#meta"},"then":{"$dynamicRef":"#meta"},"else":{"$dynamicRef":"#meta"},"allOf":{"$ref":"#/$defs/schemaArray"},"anyOf":{"$ref":"#/$defs/schemaArray"},"oneOf":{"$ref":"#/$defs/schemaArray"},"not":{"$dynamicRef":"#meta"}},"$defs":{"schemaArray":{"type":"array","minItems":1,"items":{"$dynamicRef":"#meta"}}}}')},8226:t=>{"use strict";t.exports=JSON.parse('{"$schema":"https://json-schema.org/draft/2020-12/schema","$id":"https://json-schema.org/draft/2020-12/meta/content","$vocabulary":{"https://json-schema.org/draft/2020-12/vocab/content":true},"$dynamicAnchor":"meta","title":"Content vocabulary meta-schema","type":["object","boolean"],"properties":{"contentEncoding":{"type":"string"},"contentMediaType":{"type":"string"},"contentSchema":{"$dynamicRef":"#meta"}}}')},518:t=>{"use strict";t.exports=JSON.parse('{"$schema":"https://json-schema.org/draft/2020-12/schema","$id":"https://json-schema.org/draft/2020-12/meta/core","$vocabulary":{"https://json-schema.org/draft/2020-12/vocab/core":true},"$dynamicAnchor":"meta","title":"Core vocabulary meta-schema","type":["object","boolean"],"properties":{"$id":{"$ref":"#/$defs/uriReferenceString","$comment":"Non-empty fragments not allowed.","pattern":"^[^#]*#?$"},"$schema":{"$ref":"#/$defs/uriString"},"$ref":{"$ref":"#/$defs/uriReferenceString"},"$anchor":{"$ref":"#/$defs/anchorString"},"$dynamicRef":{"$ref":"#/$defs/uriReferenceString"},"$dynamicAnchor":{"$ref":"#/$defs/anchorString"},"$vocabulary":{"type":"object","propertyNames":{"$ref":"#/$defs/uriString"},"additionalProperties":{"type":"boolean"}},"$comment":{"type":"string"},"$defs":{"type":"object","additionalProperties":{"$dynamicRef":"#meta"}}},"$defs":{"anchorString":{"type":"string","pattern":"^[A-Za-z_][-A-Za-z0-9._]*$"},"uriString":{"type":"string","format":"uri"},"uriReferenceString":{"type":"string","format":"uri-reference"}}}')},4588:t=>{"use strict";t.exports=JSON.parse('{"$schema":"https://json-schema.org/draft/2020-12/schema","$id":"https://json-schema.org/draft/2020-12/meta/format-annotation","$vocabulary":{"https://json-schema.org/draft/2020-12/vocab/format-annotation":true},"$dynamicAnchor":"meta","title":"Format vocabulary meta-schema for annotation results","type":["object","boolean"],"properties":{"format":{"type":"string"}}}')},5707:t=>{"use strict";t.exports=JSON.parse('{"$schema":"https://json-schema.org/draft/2020-12/schema","$id":"https://json-schema.org/draft/2020-12/meta/meta-data","$vocabulary":{"https://json-schema.org/draft/2020-12/vocab/meta-data":true},"$dynamicAnchor":"meta","title":"Meta-data vocabulary meta-schema","type":["object","boolean"],"properties":{"title":{"type":"string"},"description":{"type":"string"},"default":true,"deprecated":{"type":"boolean","default":false},"readOnly":{"type":"boolean","default":false},"writeOnly":{"type":"boolean","default":false},"examples":{"type":"array","items":true}}}')},9547:t=>{"use strict";t.exports=JSON.parse('{"$schema":"https://json-schema.org/draft/2020-12/schema","$id":"https://json-schema.org/draft/2020-12/meta/unevaluated","$vocabulary":{"https://json-schema.org/draft/2020-12/vocab/unevaluated":true},"$dynamicAnchor":"meta","title":"Unevaluated applicator vocabulary meta-schema","type":["object","boolean"],"properties":{"unevaluatedItems":{"$dynamicRef":"#meta"},"unevaluatedProperties":{"$dynamicRef":"#meta"}}}')},7082:t=>{"use strict";t.exports=JSON.parse('{"$schema":"https://json-schema.org/draft/2020-12/schema","$id":"https://json-schema.org/draft/2020-12/meta/validation","$vocabulary":{"https://json-schema.org/draft/2020-12/vocab/validation":true},"$dynamicAnchor":"meta","title":"Validation vocabulary meta-schema","type":["object","boolean"],"properties":{"type":{"anyOf":[{"$ref":"#/$defs/simpleTypes"},{"type":"array","items":{"$ref":"#/$defs/simpleTypes"},"minItems":1,"uniqueItems":true}]},"const":true,"enum":{"type":"array","items":true},"multipleOf":{"type":"number","exclusiveMinimum":0},"maximum":{"type":"number"},"exclusiveMaximum":{"type":"number"},"minimum":{"type":"number"},"exclusiveMinimum":{"type":"number"},"maxLength":{"$ref":"#/$defs/nonNegativeInteger"},"minLength":{"$ref":"#/$defs/nonNegativeIntegerDefault0"},"pattern":{"type":"string","format":"regex"},"maxItems":{"$ref":"#/$defs/nonNegativeInteger"},"minItems":{"$ref":"#/$defs/nonNegativeIntegerDefault0"},"uniqueItems":{"type":"boolean","default":false},"maxContains":{"$ref":"#/$defs/nonNegativeInteger"},"minContains":{"$ref":"#/$defs/nonNegativeInteger","default":1},"maxProperties":{"$ref":"#/$defs/nonNegativeInteger"},"minProperties":{"$ref":"#/$defs/nonNegativeIntegerDefault0"},"required":{"$ref":"#/$defs/stringArray"},"dependentRequired":{"type":"object","additionalProperties":{"$ref":"#/$defs/stringArray"}}},"$defs":{"nonNegativeInteger":{"type":"integer","minimum":0},"nonNegativeIntegerDefault0":{"$ref":"#/$defs/nonNegativeInteger","default":0},"simpleTypes":{"enum":["array","boolean","integer","null","number","object","string"]},"stringArray":{"type":"array","items":{"type":"string"},"uniqueItems":true,"default":[]}}}')},1678:t=>{"use strict";t.exports=JSON.parse('{"$schema":"https://json-schema.org/draft/2020-12/schema","$id":"https://json-schema.org/draft/2020-12/schema","$vocabulary":{"https://json-schema.org/draft/2020-12/vocab/core":true,"https://json-schema.org/draft/2020-12/vocab/applicator":true,"https://json-schema.org/draft/2020-12/vocab/unevaluated":true,"https://json-schema.org/draft/2020-12/vocab/validation":true,"https://json-schema.org/draft/2020-12/vocab/meta-data":true,"https://json-schema.org/draft/2020-12/vocab/format-annotation":true,"https://json-schema.org/draft/2020-12/vocab/content":true},"$dynamicAnchor":"meta","title":"Core and Validation specifications meta-schema","allOf":[{"$ref":"meta/core"},{"$ref":"meta/applicator"},{"$ref":"meta/unevaluated"},{"$ref":"meta/validation"},{"$ref":"meta/meta-data"},{"$ref":"meta/format-annotation"},{"$ref":"meta/content"}],"type":["object","boolean"],"$comment":"This meta-schema also defines keywords that have appeared in previous drafts in order to prevent incompatible extensions as they remain in common use.","properties":{"definitions":{"$comment":"\\"definitions\\" has been replaced by \\"$defs\\".","type":"object","additionalProperties":{"$dynamicRef":"#meta"},"deprecated":true,"default":{}},"dependencies":{"$comment":"\\"dependencies\\" has been split and replaced by \\"dependentSchemas\\" and \\"dependentRequired\\" in order to serve their differing semantics.","type":"object","additionalProperties":{"anyOf":[{"$dynamicRef":"#meta"},{"$ref":"meta/validation#/$defs/stringArray"}]},"deprecated":true,"default":{}},"$recursiveAnchor":{"$comment":"\\"$recursiveAnchor\\" has been replaced by \\"$dynamicAnchor\\".","$ref":"meta/core#/$defs/anchorString","deprecated":true},"$recursiveRef":{"$comment":"\\"$recursiveRef\\" has been replaced by \\"$dynamicRef\\".","$ref":"meta/core#/$defs/uriReferenceString","deprecated":true}}}')},2079:t=>{"use strict";t.exports=JSON.parse('{"$schema":"http://json-schema.org/draft-07/schema#","$id":"http://json-schema.org/draft-07/schema#","title":"Core schema meta-schema","definitions":{"schemaArray":{"type":"array","minItems":1,"items":{"$ref":"#"}},"nonNegativeInteger":{"type":"integer","minimum":0},"nonNegativeIntegerDefault0":{"allOf":[{"$ref":"#/definitions/nonNegativeInteger"},{"default":0}]},"simpleTypes":{"enum":["array","boolean","integer","null","number","object","string"]},"stringArray":{"type":"array","items":{"type":"string"},"uniqueItems":true,"default":[]}},"type":["object","boolean"],"properties":{"$id":{"type":"string","format":"uri-reference"},"$schema":{"type":"string","format":"uri"},"$ref":{"type":"string","format":"uri-reference"},"$comment":{"type":"string"},"title":{"type":"string"},"description":{"type":"string"},"default":true,"readOnly":{"type":"boolean","default":false},"examples":{"type":"array","items":true},"multipleOf":{"type":"number","exclusiveMinimum":0},"maximum":{"type":"number"},"exclusiveMaximum":{"type":"number"},"minimum":{"type":"number"},"exclusiveMinimum":{"type":"number"},"maxLength":{"$ref":"#/definitions/nonNegativeInteger"},"minLength":{"$ref":"#/definitions/nonNegativeIntegerDefault0"},"pattern":{"type":"string","format":"regex"},"additionalItems":{"$ref":"#"},"items":{"anyOf":[{"$ref":"#"},{"$ref":"#/definitions/schemaArray"}],"default":true},"maxItems":{"$ref":"#/definitions/nonNegativeInteger"},"minItems":{"$ref":"#/definitions/nonNegativeIntegerDefault0"},"uniqueItems":{"type":"boolean","default":false},"contains":{"$ref":"#"},"maxProperties":{"$ref":"#/definitions/nonNegativeInteger"},"minProperties":{"$ref":"#/definitions/nonNegativeIntegerDefault0"},"required":{"$ref":"#/definitions/stringArray"},"additionalProperties":{"$ref":"#"},"definitions":{"type":"object","additionalProperties":{"$ref":"#"},"default":{}},"properties":{"type":"object","additionalProperties":{"$ref":"#"},"default":{}},"patternProperties":{"type":"object","additionalProperties":{"$ref":"#"},"propertyNames":{"format":"regex"},"default":{}},"dependencies":{"type":"object","additionalProperties":{"anyOf":[{"$ref":"#"},{"$ref":"#/definitions/stringArray"}]}},"propertyNames":{"$ref":"#"},"const":true,"enum":{"type":"array","items":true,"minItems":1,"uniqueItems":true},"type":{"anyOf":[{"$ref":"#/definitions/simpleTypes"},{"type":"array","items":{"$ref":"#/definitions/simpleTypes"},"minItems":1,"uniqueItems":true}]},"format":{"type":"string"},"contentMediaType":{"type":"string"},"contentEncoding":{"type":"string"},"if":{"$ref":"#"},"then":{"$ref":"#"},"else":{"$ref":"#"},"allOf":{"$ref":"#/definitions/schemaArray"},"anyOf":{"$ref":"#/definitions/schemaArray"},"oneOf":{"$ref":"#/definitions/schemaArray"},"not":{"$ref":"#"}},"default":true}')}},e={};function n(i){var o=e[i];if(void 0!==o)return o.exports;var r=e[i]={id:i,loaded:!1,exports:{}};return t[i].call(r.exports,r,r.exports,n),r.loaded=!0,r.exports}n.m=t,n.amdO={},n.n=t=>{var e=t&&t.__esModule?()=>t.default:()=>t;return n.d(e,{a:e}),e},n.d=(t,e)=>{for(var i in e)n.o(e,i)&&!n.o(t,i)&&Object.defineProperty(t,i,{enumerable:!0,get:e[i]})},n.u=t=>t+".js",n.g=function(){if("object"==typeof globalThis)return globalThis;try{return this||new Function("return this")()}catch(t){if("object"==typeof window)return window}}(),n.hmd=t=>((t=Object.create(t)).children||(t.children=[]),Object.defineProperty(t,"exports",{enumerable:!0,set:()=>{throw new Error("ES Modules may not assign module.exports or exports.*, Use ESM export syntax, instead: "+t.id)}}),t),n.o=(t,e)=>Object.prototype.hasOwnProperty.call(t,e),n.r=t=>{"undefined"!=typeof Symbol&&Symbol.toStringTag&&Object.defineProperty(t,Symbol.toStringTag,{value:"Module"}),Object.defineProperty(t,"__esModule",{value:!0})},(()=>{var t;n.g.importScripts&&(t=n.g.location+"");var e=n.g.document;if(!t&&e&&(e.currentScript&&"SCRIPT"===e.currentScript.tagName.toUpperCase()&&(t=e.currentScript.src),!t)){var i=e.getElementsByTagName("script");if(i.length)for(var o=i.length-1;o>-1&&(!t||!/^http(s?):/.test(t));)t=i[o--].src}if(!t)throw new Error("Automatic publicPath is not supported in this browser");t=t.replace(/#.*$/,"").replace(/\?.*$/,"").replace(/\/[^\/]+$/,"/"),n.p=t})(),n.b=document.baseURI||self.location.href,n.nc=void 0;var i=n(6723);bio=i})();
8
8
  //# sourceMappingURL=package.js.map