@datagrok/bio 2.18.4 → 2.20.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (52) hide show
  1. package/CHANGELOG.md +5 -0
  2. package/README.md +2 -2
  3. package/dist/242.js +1 -1
  4. package/dist/242.js.map +1 -1
  5. package/dist/284.js +1 -1
  6. package/dist/284.js.map +1 -1
  7. package/dist/589.js +1 -1
  8. package/dist/589.js.map +1 -1
  9. package/dist/731.js +1 -1
  10. package/dist/731.js.map +1 -1
  11. package/dist/810.js +2 -0
  12. package/dist/810.js.map +1 -0
  13. package/dist/980.js +1 -1
  14. package/dist/980.js.map +1 -1
  15. package/dist/package-test.js +2 -2
  16. package/dist/package-test.js.map +1 -1
  17. package/dist/package.js +3 -3
  18. package/dist/package.js.map +1 -1
  19. package/dockerfiles/container.json +1 -1
  20. package/files/monomer-libraries/HELMCoreLibrary.json +18926 -18215
  21. package/files/samples/HELM_BI_CYCLIC.csv +7 -0
  22. package/files/samples/peptides-non-natural.csv +1001 -0
  23. package/files/tests/to-atomic-level-dna-fasta-output.csv +15077 -15077
  24. package/files/tests/to-atomic-level-msa-fasta-output.csv +1903 -1903
  25. package/files/tests/to-atomic-level-msa-separator-output.csv +3236 -3236
  26. package/files/tests/to-atomic-level-peptides-fasta-output.csv +32262 -32262
  27. package/files/tests/to-atomic-level-pt-fasta-2.mol +29 -29
  28. package/package.json +7 -7
  29. package/projects/seq_space_demo.zip +0 -0
  30. package/src/analysis/sequence-diversity-viewer.ts +22 -14
  31. package/src/analysis/sequence-search-base-viewer.ts +6 -72
  32. package/src/analysis/sequence-similarity-viewer.ts +42 -23
  33. package/src/demo/bio01-similarity-diversity.ts +21 -2
  34. package/src/demo/bio01a-hierarchical-clustering-and-sequence-space.ts +7 -0
  35. package/src/demo/bio01b-hierarchical-clustering-and-activity-cliffs.ts +1 -1
  36. package/src/demo/bio03-atomic-level.ts +15 -0
  37. package/src/package.ts +29 -59
  38. package/src/tests/activity-cliffs-utils.ts +7 -6
  39. package/src/tests/scoring.ts +2 -2
  40. package/src/tests/similarity-diversity-tests.ts +2 -2
  41. package/src/utils/cell-renderer.ts +11 -1
  42. package/src/utils/helm-to-molfile/converter/converter.ts +21 -9
  43. package/src/utils/helm-to-molfile/converter/monomer-wrapper.ts +8 -4
  44. package/src/utils/helm-to-molfile/converter/simple-polymer.ts +18 -9
  45. package/src/utils/monomer-lib/monomer-lib-base.ts +4 -4
  46. package/src/utils/pepsea.ts +22 -39
  47. package/src/utils/seq-helper/seq-handler.ts +2 -2
  48. package/src/utils/seq-helper/seq-helper.ts +50 -34
  49. package/src/utils/sequence-to-mol.ts +1 -1
  50. package/src/utils/ui-utils.ts +23 -0
  51. package/test-console-output-1.log +0 -7387
  52. package/test-record-1.mp4 +0 -0
package/dockerfiles/container.json CHANGED
@@ -2,5 +2,5 @@
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  "cpu": 1,
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  "memory": 1024,
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  "on_demand": true,
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- "timeout_minutes": 30
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+ "shutdown_timeout": 30
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  }