@datagrok/bio 2.18.4 → 2.19.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (22) hide show
  1. package/CHANGELOG.md +5 -0
  2. package/dist/package-test.js +2 -2
  3. package/dist/package-test.js.map +1 -1
  4. package/dist/package.js +2 -2
  5. package/dist/package.js.map +1 -1
  6. package/files/monomer-libraries/HELMCoreLibrary.json +18926 -18215
  7. package/files/tests/to-atomic-level-dna-fasta-output.csv +15077 -15077
  8. package/files/tests/to-atomic-level-msa-fasta-output.csv +1903 -1903
  9. package/files/tests/to-atomic-level-msa-separator-output.csv +3236 -3236
  10. package/files/tests/to-atomic-level-peptides-fasta-output.csv +32262 -32262
  11. package/files/tests/to-atomic-level-pt-fasta-2.mol +29 -29
  12. package/package.json +3 -3
  13. package/src/package.ts +20 -28
  14. package/src/tests/scoring.ts +2 -2
  15. package/src/utils/helm-to-molfile/converter/converter.ts +21 -9
  16. package/src/utils/helm-to-molfile/converter/simple-polymer.ts +18 -9
  17. package/src/utils/monomer-lib/monomer-lib-base.ts +4 -4
  18. package/src/utils/seq-helper/seq-handler.ts +2 -2
  19. package/src/utils/seq-helper/seq-helper.ts +68 -32
  20. package/src/utils/sequence-to-mol.ts +1 -1
  21. package/test-console-output-1.log +895 -886
  22. package/test-record-1.mp4 +0 -0
package/test-console-output-1.log CHANGED
@@ -1,8 +1,8 @@
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.18.4.X-3469a520/CtSG5Yt43Rb55eU2SapQxbvcnhumqToL/1/css/helm.css
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.19.0.X-f33f2f2a/D3Om5RTYEfcQiKa2YROB6Gahs6rvsv8p/1/css/helm.css
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/js/common/openchemlib-full.js
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.18.4.X-3469a520/CtSG5Yt43Rb55eU2SapQxbvcnhumqToL/1/dist/package.js
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.13.1.X-3469a520/qWMyacBfVjAzlAEvKHApYGH9cgEPHTOe/1/dist/package.js
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.13.1.X-3469a520/qWMyacBfVjAzlAEvKHApYGH9cgEPHTOe/1//dist/RDKit_minimal_1.2.23.wasm
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.19.0.X-f33f2f2a/D3Om5RTYEfcQiKa2YROB6Gahs6rvsv8p/1/dist/package.js
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.13.1.X-f33f2f2a/PyjUzDPxtNHO6k8eAnJvxh93AJfn6VB9/1/dist/package.js
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Chem/1.13.1.X-f33f2f2a/PyjUzDPxtNHO6k8eAnJvxh93AJfn6VB9/1//dist/RDKit_minimal_1.2.23.wasm
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  CONSOLE LOG ENTRY: RDKit module package instance was initialized
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  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
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  {
@@ -27,9 +27,9 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
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  "explicit": [],
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  "duplicateMonomerPreferences": {}
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  }
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fsample-lib-Aca-colored.json?&&flag=10
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fsample-lib-Aca-colored.json?&&flag=10
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  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
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  {
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  "exclude": [],
@@ -39,20 +39,20 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/files/Bio%2Fmonomer-sets?showFiles=true&onlyCache=false&&recursive=false&flag=9
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-sets%2Fmonomer-set-PEPTIDE.json?&&flag=9
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-sets%2Fmonomer-set-RNA.json?&&flag=9
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/files/Bio%2Fmonomer-libraries?showFiles=true&onlyCache=false&&recursive=false&flag=10
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-sets%2F%2Fmonomer-set-PEPTIDE.json?&&flag=9
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/files/Bio%2Fmonomer-libraries?showFiles=true&onlyCache=false&&recursive=false&flag=10
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-sets%2F%2Fmonomer-set-RNA.json?&&flag=9
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/files/Bio%2Fmonomer-sets?showFiles=true&onlyCache=false&&recursive=false&flag=9
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-sets%2F%2Fmonomer-set-PEPTIDE.json?&&flag=9
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-sets%2F%2Fmonomer-set-RNA.json?&&flag=9
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.18.4.X-3469a520/CtSG5Yt43Rb55eU2SapQxbvcnhumqToL/1/dist/package-test.js
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/funcs?text=package.id%2520%253D%2520%25225cee74d0-e920-11ef-a529-a34866aa260f%2522
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/packages/published/files/Bio/2.19.0.X-f33f2f2a/D3Om5RTYEfcQiKa2YROB6Gahs6rvsv8p/1/dist/package-test.js
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/funcs?text=package.id%2520%253D%2520%2522240c4180-e920-11ef-f704-eb7e20d1ede3%2522
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  CONSOLE LOG ENTRY: Running tests
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  CONSOLE LOG ENTRY: Started _first category
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  CONSOLE LOG ENTRY: Started _first _first
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  CONSOLE LOG ENTRY: Finished _first _first for 0 ms
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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  CONSOLE LOG ENTRY: Running tests
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  CONSOLE LOG ENTRY: Started activityCliffs category
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  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -79,6 +79,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
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  "exclude": [],
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  "duplicateMonomerPreferences": {}
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  }
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
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  CONSOLE LOG ENTRY: Started activityCliffs activityCliffsOpens
@@ -86,14 +87,13 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/images/viewers/viewers_sprite.png
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/images/entities/view_layout.svg
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/images/ribbon/ribbon_sprite.svg
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- CONSOLE LOG ENTRY: knn graph: 154.10986328125 ms
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
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+ CONSOLE LOG ENTRY: knn graph: 206.0849609375 ms
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/font/Roboto-Italic.woff2
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- CONSOLE LOG ENTRY: fit: 4166.2880859375 ms
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- CONSOLE LOG ENTRY: Finished activityCliffs activityCliffsOpens for 6725 ms
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+ CONSOLE LOG ENTRY: fit: 5010.05810546875 ms
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+ CONSOLE LOG ENTRY: Finished activityCliffs activityCliffsOpens for 8568 ms
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/images/entities/table.svg
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/scatter-plot.md
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
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  "exclude": [],
@@ -111,15 +111,22 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fsample-lib-Aca-colored.json?&&flag=10
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  CONSOLE LOG REQUEST: 404, http://localhost:8080/uploads/youtube/visualizations2.png
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  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
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+ CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/scatter-plot-zoom-and-pack-thumb.png
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+ CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
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  CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/scatter-plot-colors-sizes-markers-labels-thumb.png
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  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
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+ CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/scatter-plot-selection-thumb.png
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+ CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-regression-line.png
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/%7Brequire('./img/formula-lines-thumb.png').default%7D
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- CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/scatter-plot-zoom-and-pack-thumb.png
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  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
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- CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/scatter-plot-selection-thumb.png
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+ CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/group-tooltip-thumb.png
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+ CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/scatter-plot-labels-thumb.png
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  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
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  CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/scatter-plot-jitter-thumb.png
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  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-lines.png
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/viewers/scatter-plot-molecules.png
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  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
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  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
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  "explicit": [],
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  "duplicateMonomerPreferences": {}
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  }
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- CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/scatter-plot-labels-thumb.png
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- CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-regression-line.png
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- CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/group-tooltip-thumb.png
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- CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/viewers/scatter-plot-molecules.png
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-lines.png
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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  CONSOLE LOG ENTRY: Running tests
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  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
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  CONSOLE LOG ENTRY: Started activityCliffs activityCliffsWithEmptyRows
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2F100_3_clustests_empty_vals.csv?&&flag=9
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- CONSOLE LOG ENTRY: knn graph: 75.46484375 ms
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
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- CONSOLE LOG ENTRY: fit: 3822.4541015625 ms
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- CONSOLE LOG ENTRY: Finished activityCliffs activityCliffsWithEmptyRows for 5266 ms
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+ CONSOLE LOG ENTRY: knn graph: 141.22607421875 ms
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+ CONSOLE LOG ENTRY: fit: 4270.84814453125 ms
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+ CONSOLE LOG ENTRY: Finished activityCliffs activityCliffsWithEmptyRows for 6301 ms
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fsample-lib-Aca-colored.json?&&flag=10
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+ CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
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- CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
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- CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/group-tooltip-thumb.png
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- CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
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- CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/scatter-plot-labels-thumb.png
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+ CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/group-tooltip-thumb.png
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+ CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/scatter-plot-labels-thumb.png
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+ CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/webgpu-scatterplot-thumb.png
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+ CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
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  CONSOLE LOG ENTRY: Started activityCliffs Helm
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- CONSOLE LOG ENTRY: Finished activityCliffs Helm for 2 ms
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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+ CONSOLE LOG ENTRY: Finished activityCliffs Helm for 8 ms
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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  CONSOLE LOG ENTRY: Started bio-substructure-filters fasta
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- CONSOLE LOG ENTRY: Finished bio-substructure-filters fasta for 157 ms
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+ CONSOLE LOG ENTRY: Finished bio-substructure-filters fasta for 182 ms
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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  CONSOLE LOG ENTRY: Running tests
324
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  CONSOLE LOG ENTRY: Started bio-substructure-filters category
325
326
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -350,7 +351,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
350
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
351
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  CONSOLE LOG ENTRY: Started bio-substructure-filters helm-dialog
352
353
  CONSOLE LOG ENTRY: Finished bio-substructure-filters helm-dialog for 2 ms
353
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
354
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
354
355
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
355
356
  {
356
357
  "exclude": [],
@@ -372,7 +373,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
372
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  "explicit": [],
373
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  "duplicateMonomerPreferences": {}
374
375
  }
375
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
376
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
376
377
  CONSOLE LOG ENTRY: Running tests
377
378
  CONSOLE LOG ENTRY: Started bio-substructure-filters category
378
379
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -402,8 +403,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
402
403
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
403
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
404
405
  CONSOLE LOG ENTRY: Started bio-substructure-filters helm-view
405
- CONSOLE LOG ENTRY: Finished bio-substructure-filters helm-view for 2 ms
406
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
406
+ CONSOLE LOG ENTRY: Finished bio-substructure-filters helm-view for 3 ms
407
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
407
408
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
408
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  {
409
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  "exclude": [],
@@ -425,7 +426,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
425
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  "explicit": [],
426
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  "duplicateMonomerPreferences": {}
427
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  }
428
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
429
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
429
430
  CONSOLE LOG ENTRY: Running tests
430
431
  CONSOLE LOG ENTRY: Started bio-substructure-filters category
431
432
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -457,19 +458,18 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
457
458
  CONSOLE LOG ENTRY: Started bio-substructure-filters reopen
458
459
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Ffilter_FASTA.csv?&&flag=9
459
460
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/filters.md
460
- CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/filter-thumb.png
461
- CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/filter-checkbox-thumb.png
462
461
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/text-filter-thumb.png
463
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/expression-filter-thumb.png
464
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/free-text-filter-thumb.png
464
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/filter-thumb.png
465
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/filter-checkbox-thumb.png
465
466
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/hierarchical-filter-thumb.png
466
467
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/bool-combined-thumb.png
467
468
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/filters-multi-values-thumb.png
468
469
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/filters-drag-column-thumb.png
469
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
470
470
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/datagrok.md
471
- CONSOLE LOG ENTRY: Finished bio-substructure-filters reopen for 1148 ms
472
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
471
+ CONSOLE LOG ENTRY: Finished bio-substructure-filters reopen for 1165 ms
472
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
473
473
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
474
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  {
475
475
  "exclude": [],
@@ -491,7 +491,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
491
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  "explicit": [],
492
492
  "duplicateMonomerPreferences": {}
493
493
  }
494
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
494
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
495
495
  CONSOLE LOG ENTRY: Running tests
496
496
  CONSOLE LOG ENTRY: Started bio-substructure-filters category
497
497
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -523,10 +523,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
523
523
  CONSOLE LOG ENTRY: Started bio-substructure-filters reset-fasta
524
524
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Ffilter_FASTA.csv?&&flag=9
525
525
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/filters.md
526
- CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/datagrok.md
527
- CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/filters.md
528
- CONSOLE LOG ENTRY: Finished bio-substructure-filters reset-fasta for 1925 ms
529
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
526
+ CONSOLE LOG ENTRY: Finished bio-substructure-filters reset-fasta for 854 ms
527
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
530
528
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
531
529
  {
532
530
  "exclude": [],
@@ -548,7 +546,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
548
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  "explicit": [],
549
547
  "duplicateMonomerPreferences": {}
550
548
  }
551
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
549
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/datagrok.md
550
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
552
551
  CONSOLE LOG ENTRY: Running tests
553
552
  CONSOLE LOG ENTRY: Started bio-substructure-filters category
554
553
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -579,8 +578,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
579
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  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
580
579
  CONSOLE LOG ENTRY: Started bio-substructure-filters separator
581
580
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Ffilter_MSA.csv?&&flag=9
582
- CONSOLE LOG ENTRY: Finished bio-substructure-filters separator for 88 ms
583
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
581
+ CONSOLE LOG ENTRY: Finished bio-substructure-filters separator for 104 ms
582
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
584
583
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
585
584
  {
586
585
  "exclude": [],
@@ -602,8 +601,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
602
601
  "explicit": [],
603
602
  "duplicateMonomerPreferences": {}
604
603
  }
605
- CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/datagrok.md
606
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
604
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
605
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
607
606
  CONSOLE LOG ENTRY: Running tests
608
607
  CONSOLE LOG ENTRY: Started bio-substructure-filters category
609
608
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -634,8 +633,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
634
633
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
635
634
  CONSOLE LOG ENTRY: Started bio-substructure-filters sync-fasta
636
635
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Ffilter_FASTA.csv?&&flag=9
637
- CONSOLE LOG ENTRY: Finished bio-substructure-filters sync-fasta for 133 ms
638
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
636
+ CONSOLE LOG ENTRY: Finished bio-substructure-filters sync-fasta for 172 ms
637
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
639
638
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
640
639
  {
641
640
  "exclude": [],
@@ -657,7 +656,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
657
656
  "explicit": [],
658
657
  "duplicateMonomerPreferences": {}
659
658
  }
660
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
659
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
661
660
  CONSOLE LOG ENTRY: Running tests
662
661
  CONSOLE LOG ENTRY: Started bio-substructure-filters category
663
662
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -688,7 +687,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
688
687
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
689
688
  CONSOLE LOG ENTRY: Started bio-substructure-filters sync-helm
690
689
  CONSOLE LOG ENTRY: Finished bio-substructure-filters sync-helm for 2 ms
691
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
690
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
692
691
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
693
692
  {
694
693
  "exclude": [],
@@ -710,7 +709,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
710
709
  "explicit": [],
711
710
  "duplicateMonomerPreferences": {}
712
711
  }
713
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
712
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
714
713
  CONSOLE LOG ENTRY: Running tests
715
714
  CONSOLE LOG ENTRY: Started bio-substructure-filters category
716
715
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -741,9 +740,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
741
740
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
742
741
  CONSOLE LOG ENTRY: Started bio-substructure-filters sync-msa
743
742
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Ffilter_MSA.csv?&&flag=9
744
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
745
- CONSOLE LOG ENTRY: Finished bio-substructure-filters sync-msa for 115 ms
746
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
743
+ CONSOLE LOG ENTRY: Finished bio-substructure-filters sync-msa for 113 ms
744
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
747
745
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
748
746
  {
749
747
  "exclude": [],
@@ -765,7 +763,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
765
763
  "explicit": [],
766
764
  "duplicateMonomerPreferences": {}
767
765
  }
768
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
766
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
769
767
  CONSOLE LOG ENTRY: Running tests
770
768
  CONSOLE LOG ENTRY: Started bio-substructure-filters category
771
769
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -796,8 +794,17 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
796
794
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
797
795
  CONSOLE LOG ENTRY: Started bio-substructure-filters two-columns-fasta
798
796
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/filters.md
799
- CONSOLE LOG ENTRY: Finished bio-substructure-filters two-columns-fasta for 658 ms
800
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
797
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/filter-thumb.png
798
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/filter-checkbox-thumb.png
799
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/text-filter-thumb.png
800
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/expression-filter-thumb.png
801
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/free-text-filter-thumb.png
802
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/hierarchical-filter-thumb.png
803
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/gifs/bool-combined-thumb.png
804
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/filters-multi-values-thumb.png
805
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/filters-drag-column-thumb.png
806
+ CONSOLE LOG ENTRY: Finished bio-substructure-filters two-columns-fasta for 2051 ms
807
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
801
808
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
802
809
  {
803
810
  "exclude": [],
@@ -819,13 +826,14 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
819
826
  "explicit": [],
820
827
  "duplicateMonomerPreferences": {}
821
828
  }
829
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
822
830
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/datagrok.md
823
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
831
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
824
832
  CONSOLE LOG ENTRY: Running tests
825
833
  CONSOLE LOG ENTRY: Started bio category
826
834
  CONSOLE LOG ENTRY: Started bio testGetAlphabetSimilarity
827
- CONSOLE LOG ENTRY: Finished bio testGetAlphabetSimilarity for 1 ms
828
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
835
+ CONSOLE LOG ENTRY: Finished bio testGetAlphabetSimilarity for 2 ms
836
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
829
837
  CONSOLE LOG ENTRY: Started bio-substructure-filters category
830
838
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
831
839
  {
@@ -874,12 +882,12 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
874
882
  "explicit": [],
875
883
  "duplicateMonomerPreferences": {}
876
884
  }
877
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
885
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
878
886
  CONSOLE LOG ENTRY: Running tests
879
887
  CONSOLE LOG ENTRY: Started bio category
880
888
  CONSOLE LOG ENTRY: Started bio testGetStatsHelm1
881
- CONSOLE LOG ENTRY: Finished bio testGetStatsHelm1 for 8 ms
882
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
889
+ CONSOLE LOG ENTRY: Finished bio testGetStatsHelm1 for 10 ms
890
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
883
891
  CONSOLE LOG ENTRY: Started bio-substructure-filters category
884
892
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
885
893
  {
@@ -928,12 +936,12 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
928
936
  "explicit": [],
929
937
  "duplicateMonomerPreferences": {}
930
938
  }
931
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
939
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
932
940
  CONSOLE LOG ENTRY: Running tests
933
941
  CONSOLE LOG ENTRY: Started bio category
934
942
  CONSOLE LOG ENTRY: Started bio testGetStatsN1
935
- CONSOLE LOG ENTRY: Finished bio testGetStatsN1 for 7 ms
936
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
943
+ CONSOLE LOG ENTRY: Finished bio testGetStatsN1 for 12 ms
944
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
937
945
  CONSOLE LOG ENTRY: Started bio-substructure-filters category
938
946
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
939
947
  {
@@ -982,12 +990,12 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
982
990
  "explicit": [],
983
991
  "duplicateMonomerPreferences": {}
984
992
  }
985
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
993
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
986
994
  CONSOLE LOG ENTRY: Running tests
987
995
  CONSOLE LOG ENTRY: Started bio category
988
996
  CONSOLE LOG ENTRY: Started bio testPickupPaletteAA1
989
- CONSOLE LOG ENTRY: Finished bio testPickupPaletteAA1 for 4 ms
990
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
997
+ CONSOLE LOG ENTRY: Finished bio testPickupPaletteAA1 for 3 ms
998
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
991
999
  CONSOLE LOG ENTRY: Started bio-substructure-filters category
992
1000
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
993
1001
  {
@@ -1036,12 +1044,12 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
1036
1044
  "explicit": [],
1037
1045
  "duplicateMonomerPreferences": {}
1038
1046
  }
1039
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1047
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1040
1048
  CONSOLE LOG ENTRY: Running tests
1041
1049
  CONSOLE LOG ENTRY: Started bio category
1042
1050
  CONSOLE LOG ENTRY: Started bio testPickupPaletteN1e
1043
- CONSOLE LOG ENTRY: Finished bio testPickupPaletteN1e for 4 ms
1044
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1051
+ CONSOLE LOG ENTRY: Finished bio testPickupPaletteN1e for 13 ms
1052
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1045
1053
  CONSOLE LOG ENTRY: Started bio-substructure-filters category
1046
1054
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
1047
1055
  {
@@ -1090,13 +1098,12 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
1090
1098
  "explicit": [],
1091
1099
  "duplicateMonomerPreferences": {}
1092
1100
  }
1093
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
1094
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1101
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1095
1102
  CONSOLE LOG ENTRY: Running tests
1096
1103
  CONSOLE LOG ENTRY: Started bio category
1097
1104
  CONSOLE LOG ENTRY: Started bio testPickupPaletteN1
1098
- CONSOLE LOG ENTRY: Finished bio testPickupPaletteN1 for 2 ms
1099
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1105
+ CONSOLE LOG ENTRY: Finished bio testPickupPaletteN1 for 3 ms
1106
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1100
1107
  CONSOLE LOG ENTRY: Started bio-substructure-filters category
1101
1108
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
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  {
@@ -1145,12 +1152,13 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
1145
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  "explicit": [],
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  "duplicateMonomerPreferences": {}
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  }
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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  CONSOLE LOG ENTRY: Running tests
1150
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  CONSOLE LOG ENTRY: Started bio category
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  CONSOLE LOG ENTRY: Started bio testPickupPaletteX
1152
- CONSOLE LOG ENTRY: Finished bio testPickupPaletteX for 1 ms
1153
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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+ CONSOLE LOG ENTRY: Finished bio testPickupPaletteX for 4 ms
1161
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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  CONSOLE LOG ENTRY: Started bio-substructure-filters category
1155
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  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
1156
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  {
@@ -1199,361 +1207,361 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
1199
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  "explicit": [],
1200
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  "duplicateMonomerPreferences": {}
1201
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  }
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1210
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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  CONSOLE LOG ENTRY: Running tests
1204
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  CONSOLE LOG ENTRY: Started checkInputColumn category
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  CONSOLE LOG ENTRY: Started checkInputColumn testGetActionFunctionMeta
1206
- CONSOLE LOG ENTRY: Finished checkInputColumn testGetActionFunctionMeta for 4 ms
1207
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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+ CONSOLE LOG ENTRY: Finished checkInputColumn testGetActionFunctionMeta for 8 ms
1215
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1216
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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  CONSOLE LOG ENTRY: Running tests
1210
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  CONSOLE LOG ENTRY: Started checkInputColumn category
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  CONSOLE LOG ENTRY: Started checkInputColumn testMsaNegHelm
1212
- CONSOLE LOG ENTRY: Finished checkInputColumn testMsaNegHelm for 4 ms
1213
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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+ CONSOLE LOG ENTRY: Finished checkInputColumn testMsaNegHelm for 6 ms
1221
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1215
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  CONSOLE LOG ENTRY: Running tests
1216
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  CONSOLE LOG ENTRY: Started checkInputColumn category
1217
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  CONSOLE LOG ENTRY: Started checkInputColumn testMsaNegUN
1218
- CONSOLE LOG ENTRY: Finished checkInputColumn testMsaNegUN for 2 ms
1219
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1226
+ CONSOLE LOG ENTRY: Finished checkInputColumn testMsaNegUN for 3 ms
1227
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1228
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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  CONSOLE LOG ENTRY: Running tests
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  CONSOLE LOG ENTRY: Started checkInputColumn category
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  CONSOLE LOG ENTRY: Started checkInputColumn testMsaPos
1224
- CONSOLE LOG ENTRY: Finished checkInputColumn testMsaPos for 5 ms
1225
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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+ CONSOLE LOG ENTRY: Finished checkInputColumn testMsaPos for 1 ms
1233
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1234
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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  CONSOLE LOG ENTRY: Running tests
1228
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  CONSOLE LOG ENTRY: Started converters category
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  CONSOLE LOG ENTRY: Started converters testFastaDnaToHelm
1230
- CONSOLE LOG ENTRY: Finished converters testFastaDnaToHelm for 38 ms
1231
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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+ CONSOLE LOG ENTRY: Finished converters testFastaDnaToHelm for 42 ms
1239
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1240
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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  CONSOLE LOG ENTRY: Running tests
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  CONSOLE LOG ENTRY: Started converters category
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  CONSOLE LOG ENTRY: Started converters testFastaDnaToSeparator
1236
- CONSOLE LOG ENTRY: Finished converters testFastaDnaToSeparator for 45 ms
1237
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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+ CONSOLE LOG ENTRY: Finished converters testFastaDnaToSeparator for 38 ms
1245
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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  CONSOLE LOG ENTRY: Running tests
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  CONSOLE LOG ENTRY: Started converters category
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  CONSOLE LOG ENTRY: Started converters testFastaGapsToHelm
1243
- CONSOLE LOG ENTRY: Finished converters testFastaGapsToHelm for 25 ms
1244
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1245
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1250
+ CONSOLE LOG ENTRY: Finished converters testFastaGapsToHelm for 47 ms
1251
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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  CONSOLE LOG ENTRY: Running tests
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  CONSOLE LOG ENTRY: Started converters category
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  CONSOLE LOG ENTRY: Started converters testFastaGapsToSeparator
1249
- CONSOLE LOG ENTRY: Finished converters testFastaGapsToSeparator for 28 ms
1250
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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+ CONSOLE LOG ENTRY: Finished converters testFastaGapsToSeparator for 18 ms
1258
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1259
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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  CONSOLE LOG ENTRY: Running tests
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  CONSOLE LOG ENTRY: Started converters category
1254
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  CONSOLE LOG ENTRY: Started converters testFastaPtToHelm
1255
- CONSOLE LOG ENTRY: Finished converters testFastaPtToHelm for 12 ms
1256
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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+ CONSOLE LOG ENTRY: Finished converters testFastaPtToHelm for 47 ms
1264
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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  CONSOLE LOG ENTRY: Running tests
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  CONSOLE LOG ENTRY: Started converters category
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  CONSOLE LOG ENTRY: Started converters testFastaPtToSeparator
1261
- CONSOLE LOG ENTRY: Finished converters testFastaPtToSeparator for 10 ms
1262
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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+ CONSOLE LOG ENTRY: Finished converters testFastaPtToSeparator for 12 ms
1270
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
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  CONSOLE LOG ENTRY: Running tests
1265
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  CONSOLE LOG ENTRY: Started converters category
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  CONSOLE LOG ENTRY: Started converters testFastaRnaToHelm
1267
- CONSOLE LOG ENTRY: Finished converters testFastaRnaToHelm for 13 ms
1268
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1269
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
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+ CONSOLE LOG ENTRY: Finished converters testFastaRnaToHelm for 47 ms
1276
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1277
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1270
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  CONSOLE LOG ENTRY: Running tests
1271
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  CONSOLE LOG ENTRY: Started converters category
1272
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  CONSOLE LOG ENTRY: Started converters testFastaRnaToSeparator
1273
- CONSOLE LOG ENTRY: Finished converters testFastaRnaToSeparator for 42 ms
1274
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1275
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1281
+ CONSOLE LOG ENTRY: Finished converters testFastaRnaToSeparator for 59 ms
1282
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1283
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1276
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  CONSOLE LOG ENTRY: Running tests
1277
1285
  CONSOLE LOG ENTRY: Started converters category
1278
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  CONSOLE LOG ENTRY: Started converters testFastaUnToSeparator
1279
- CONSOLE LOG ENTRY: Finished converters testFastaUnToSeparator for 14 ms
1280
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1281
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1287
+ CONSOLE LOG ENTRY: Finished converters testFastaUnToSeparator for 60 ms
1288
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1289
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1282
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  CONSOLE LOG ENTRY: Running tests
1283
1291
  CONSOLE LOG ENTRY: Started converters category
1284
1292
  CONSOLE LOG ENTRY: Started converters testHelmDnaToFasta
1285
- CONSOLE LOG ENTRY: Finished converters testHelmDnaToFasta for 53 ms
1286
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1287
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1293
+ CONSOLE LOG ENTRY: Finished converters testHelmDnaToFasta for 35 ms
1294
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1295
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1288
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  CONSOLE LOG ENTRY: Running tests
1289
1297
  CONSOLE LOG ENTRY: Started converters category
1290
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  CONSOLE LOG ENTRY: Started converters testHelmDnaToSeparator
1291
- CONSOLE LOG ENTRY: Finished converters testHelmDnaToSeparator for 35 ms
1292
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1293
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1299
+ CONSOLE LOG ENTRY: Finished converters testHelmDnaToSeparator for 56 ms
1300
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1301
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1294
1302
  CONSOLE LOG ENTRY: Running tests
1295
1303
  CONSOLE LOG ENTRY: Started converters category
1296
1304
  CONSOLE LOG ENTRY: Started converters testHelmLoneDeoxyribose
1297
- CONSOLE LOG ENTRY: Finished converters testHelmLoneDeoxyribose for 24 ms
1298
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1299
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1305
+ CONSOLE LOG ENTRY: Finished converters testHelmLoneDeoxyribose for 36 ms
1306
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1307
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1300
1308
  CONSOLE LOG ENTRY: Running tests
1301
1309
  CONSOLE LOG ENTRY: Started converters category
1302
1310
  CONSOLE LOG ENTRY: Started converters testHelmLonePhosphorus
1303
- CONSOLE LOG ENTRY: Finished converters testHelmLonePhosphorus for 40 ms
1304
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1305
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1311
+ CONSOLE LOG ENTRY: Finished converters testHelmLonePhosphorus for 22 ms
1312
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1313
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1306
1314
  CONSOLE LOG ENTRY: Running tests
1307
1315
  CONSOLE LOG ENTRY: Started converters category
1308
1316
  CONSOLE LOG ENTRY: Started converters testHelmLoneRibose
1309
- CONSOLE LOG ENTRY: Finished converters testHelmLoneRibose for 14 ms
1310
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1311
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1317
+ CONSOLE LOG ENTRY: Finished converters testHelmLoneRibose for 25 ms
1318
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1319
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1312
1320
  CONSOLE LOG ENTRY: Running tests
1313
1321
  CONSOLE LOG ENTRY: Started converters category
1314
1322
  CONSOLE LOG ENTRY: Started converters testHelmPtToFasta
1315
- CONSOLE LOG ENTRY: Finished converters testHelmPtToFasta for 28 ms
1316
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1317
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1323
+ CONSOLE LOG ENTRY: Finished converters testHelmPtToFasta for 24 ms
1324
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1325
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1318
1326
  CONSOLE LOG ENTRY: Running tests
1319
1327
  CONSOLE LOG ENTRY: Started converters category
1320
1328
  CONSOLE LOG ENTRY: Started converters testHelmPtToSeparator
1321
- CONSOLE LOG ENTRY: Finished converters testHelmPtToSeparator for 13 ms
1322
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1323
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1329
+ CONSOLE LOG ENTRY: Finished converters testHelmPtToSeparator for 28 ms
1330
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1331
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1324
1332
  CONSOLE LOG ENTRY: Running tests
1325
1333
  CONSOLE LOG ENTRY: Started converters category
1326
1334
  CONSOLE LOG ENTRY: Started converters testHelmRnaToFasta
1327
- CONSOLE LOG ENTRY: Finished converters testHelmRnaToFasta for 15 ms
1328
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1329
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1335
+ CONSOLE LOG ENTRY: Finished converters testHelmRnaToFasta for 141 ms
1336
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1337
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1330
1338
  CONSOLE LOG ENTRY: Running tests
1331
1339
  CONSOLE LOG ENTRY: Started converters category
1332
1340
  CONSOLE LOG ENTRY: Started converters testHelmRnaToSeparator
1333
- CONSOLE LOG ENTRY: Finished converters testHelmRnaToSeparator for 21 ms
1334
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1335
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1341
+ CONSOLE LOG ENTRY: Finished converters testHelmRnaToSeparator for 52 ms
1342
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1343
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1336
1344
  CONSOLE LOG ENTRY: Running tests
1337
1345
  CONSOLE LOG ENTRY: Started converters category
1338
1346
  CONSOLE LOG ENTRY: Started converters testHelmUnToFasta
1339
- CONSOLE LOG ENTRY: Finished converters testHelmUnToFasta for 13 ms
1340
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1341
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1347
+ CONSOLE LOG ENTRY: Finished converters testHelmUnToFasta for 24 ms
1348
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1349
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1342
1350
  CONSOLE LOG ENTRY: Running tests
1343
1351
  CONSOLE LOG ENTRY: Started converters category
1344
1352
  CONSOLE LOG ENTRY: Started converters testHelmUnToSeparator
1345
- CONSOLE LOG ENTRY: Finished converters testHelmUnToSeparator for 30 ms
1346
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1347
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1353
+ CONSOLE LOG ENTRY: Finished converters testHelmUnToSeparator for 31 ms
1354
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1355
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1348
1356
  CONSOLE LOG ENTRY: Running tests
1349
1357
  CONSOLE LOG ENTRY: Started converters category
1350
1358
  CONSOLE LOG ENTRY: Started converters testSeparatorDnaToFasta
1351
- CONSOLE LOG ENTRY: Finished converters testSeparatorDnaToFasta for 18 ms
1352
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1353
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1359
+ CONSOLE LOG ENTRY: Finished converters testSeparatorDnaToFasta for 48 ms
1360
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1361
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1354
1362
  CONSOLE LOG ENTRY: Running tests
1355
1363
  CONSOLE LOG ENTRY: Started converters category
1356
1364
  CONSOLE LOG ENTRY: Started converters testSeparatorDnaToHelm
1357
- CONSOLE LOG ENTRY: Finished converters testSeparatorDnaToHelm for 10 ms
1358
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1359
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1365
+ CONSOLE LOG ENTRY: Finished converters testSeparatorDnaToHelm for 146 ms
1366
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1367
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1360
1368
  CONSOLE LOG ENTRY: Running tests
1361
1369
  CONSOLE LOG ENTRY: Started converters category
1362
1370
  CONSOLE LOG ENTRY: Started converters testSeparatorGapsToFasta
1363
- CONSOLE LOG ENTRY: Finished converters testSeparatorGapsToFasta for 14 ms
1364
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1365
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1371
+ CONSOLE LOG ENTRY: Finished converters testSeparatorGapsToFasta for 18 ms
1372
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1373
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1366
1374
  CONSOLE LOG ENTRY: Running tests
1367
1375
  CONSOLE LOG ENTRY: Started converters category
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  CONSOLE LOG ENTRY: Started Detectors category
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  CONSOLE LOG ENTRY: Running tests
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  CONSOLE LOG ENTRY: Started detectors category
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  CONSOLE LOG ENTRY: Started detectors.weak-and-likely category
@@ -1561,653 +1569,653 @@ CONSOLE LOG ENTRY: Started detectorsBenchmark category
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  CONSOLE LOG ENTRY: Started Detectors category
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  CONSOLE LOG ENTRY: Started Detectors detectMacromolecule
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  CONSOLE LOG ENTRY: System:AppData/Bio/undefined
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  CONSOLE LOG ENTRY: Running tests
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  CONSOLE LOG ENTRY: Started detectors category
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  CONSOLE LOG ENTRY: Started detectorsBenchmark category
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  CONSOLE LOG ENTRY: Started detectors samplesTestDmvOffices
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- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1982
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1988
+ CONSOLE LOG ENTRY: Finished detectors.weak-and-likely fastaUn2LikelyName for 14 ms
1989
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1990
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1983
1991
  CONSOLE LOG ENTRY: Running tests
1984
1992
  CONSOLE LOG ENTRY: Started detectors.weak-and-likely category
1985
1993
  CONSOLE LOG ENTRY: Started detectors.weak-and-likely fastaUnMsa1LikelyName
1986
- CONSOLE LOG ENTRY: Finished detectors.weak-and-likely fastaUnMsa1LikelyName for 9 ms
1987
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1988
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1994
+ CONSOLE LOG ENTRY: Finished detectors.weak-and-likely fastaUnMsa1LikelyName for 14 ms
1995
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1996
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1989
1997
  CONSOLE LOG ENTRY: Running tests
1990
1998
  CONSOLE LOG ENTRY: Started detectorsBenchmark category
1991
1999
  CONSOLE LOG ENTRY: Started detectorsBenchmark fastaDnaLong1e6Few50
1992
- CONSOLE LOG ENTRY: ET 2 ms is OK.
1993
- CONSOLE LOG ENTRY: Finished detectorsBenchmark fastaDnaLong1e6Few50 for 3774 ms
1994
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
1995
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2000
+ CONSOLE LOG ENTRY: ET 3 ms is OK.
2001
+ CONSOLE LOG ENTRY: Finished detectorsBenchmark fastaDnaLong1e6Few50 for 4705 ms
2002
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2003
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
1996
2004
  CONSOLE LOG ENTRY: Running tests
1997
2005
  CONSOLE LOG ENTRY: Started detectorsBenchmark category
1998
2006
  CONSOLE LOG ENTRY: Started detectorsBenchmark fastaDnaShorts50Few50
1999
- CONSOLE LOG ENTRY: ET 1 ms is OK.
2007
+ CONSOLE LOG ENTRY: ET 2 ms is OK.
2000
2008
  CONSOLE LOG ENTRY: Finished detectorsBenchmark fastaDnaShorts50Few50 for 4 ms
2001
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2002
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2009
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2010
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2003
2011
  CONSOLE LOG ENTRY: Running tests
2004
2012
  CONSOLE LOG ENTRY: Started detectorsBenchmark category
2005
2013
  CONSOLE LOG ENTRY: Started detectorsBenchmark fastaDnaShorts50Many1E6
2006
- CONSOLE LOG ENTRY: ET 4 ms is OK.
2007
- CONSOLE LOG ENTRY: Finished detectorsBenchmark fastaDnaShorts50Many1E6 for 8053 ms
2008
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2009
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2014
+ CONSOLE LOG ENTRY: ET 3 ms is OK.
2015
+ CONSOLE LOG ENTRY: Finished detectorsBenchmark fastaDnaShorts50Many1E6 for 9604 ms
2016
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2017
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2010
2018
  CONSOLE LOG ENTRY: Running tests
2011
2019
  CONSOLE LOG ENTRY: Started detectorsBenchmark category
2012
2020
  CONSOLE LOG ENTRY: Started detectorsBenchmark separatorDnaLong1e6Few50
2013
- CONSOLE LOG ENTRY: ET 2 ms is OK.
2014
- CONSOLE LOG ENTRY: Finished detectorsBenchmark separatorDnaLong1e6Few50 for 2195 ms
2015
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2016
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2021
+ CONSOLE LOG ENTRY: ET 1 ms is OK.
2022
+ CONSOLE LOG ENTRY: Finished detectorsBenchmark separatorDnaLong1e6Few50 for 2349 ms
2023
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2024
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2017
2025
  CONSOLE LOG ENTRY: Running tests
2018
2026
  CONSOLE LOG ENTRY: Started detectorsBenchmark category
2019
2027
  CONSOLE LOG ENTRY: Started detectorsBenchmark separatorDnaShorts50Few50
2020
- CONSOLE LOG ENTRY: ET 1 ms is OK.
2021
- CONSOLE LOG ENTRY: Finished detectorsBenchmark separatorDnaShorts50Few50 for 4 ms
2022
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2023
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2028
+ CONSOLE LOG ENTRY: ET 2 ms is OK.
2029
+ CONSOLE LOG ENTRY: Finished detectorsBenchmark separatorDnaShorts50Few50 for 6 ms
2030
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2031
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2024
2032
  CONSOLE LOG ENTRY: Running tests
2025
2033
  CONSOLE LOG ENTRY: Started detectorsBenchmark category
2026
2034
  CONSOLE LOG ENTRY: Started detectorsBenchmark separatorDnaShorts50Many1E6
2027
- CONSOLE LOG ENTRY: ET 3 ms is OK.
2028
- CONSOLE LOG ENTRY: Finished detectorsBenchmark separatorDnaShorts50Many1E6 for 4988 ms
2029
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2030
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2035
+ CONSOLE LOG ENTRY: ET 19 ms is OK.
2036
+ CONSOLE LOG ENTRY: Finished detectorsBenchmark separatorDnaShorts50Many1E6 for 6025 ms
2037
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2038
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2031
2039
  CONSOLE LOG ENTRY: Running tests
2032
2040
  CONSOLE LOG ENTRY: Started Distance category
2033
2041
  CONSOLE LOG ENTRY: Started Distance DNA-distance-function
2034
- CONSOLE LOG ENTRY: Finished Distance DNA-distance-function for 12 ms
2035
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2036
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2042
+ CONSOLE LOG ENTRY: Finished Distance DNA-distance-function for 13 ms
2043
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2044
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2037
2045
  CONSOLE LOG ENTRY: Running tests
2038
2046
  CONSOLE LOG ENTRY: Started Distance category
2039
2047
  CONSOLE LOG ENTRY: Started Distance hamming
2040
- CONSOLE LOG ENTRY: Finished Distance hamming for 1 ms
2041
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2042
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2048
+ CONSOLE LOG ENTRY: Finished Distance hamming for 0 ms
2049
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2050
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2043
2051
  CONSOLE LOG ENTRY: Running tests
2044
2052
  CONSOLE LOG ENTRY: Started Distance category
2045
2053
  CONSOLE LOG ENTRY: Started Distance levenstein-del
2046
- CONSOLE LOG ENTRY: Finished Distance levenstein-del for 0 ms
2047
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2048
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2054
+ CONSOLE LOG ENTRY: Finished Distance levenstein-del for 1 ms
2055
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2056
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2049
2057
  CONSOLE LOG ENTRY: Running tests
2050
2058
  CONSOLE LOG ENTRY: Started Distance category
2051
2059
  CONSOLE LOG ENTRY: Started Distance levenstein-sub
2052
2060
  CONSOLE LOG ENTRY: Finished Distance levenstein-sub for 1 ms
2053
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2054
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2061
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2062
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2055
2063
  CONSOLE LOG ENTRY: Running tests
2056
2064
  CONSOLE LOG ENTRY: Started Distance category
2057
2065
  CONSOLE LOG ENTRY: Started Distance MSA-distance-function
2058
- CONSOLE LOG ENTRY: Finished Distance MSA-distance-function for 22 ms
2059
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2060
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2066
+ CONSOLE LOG ENTRY: Finished Distance MSA-distance-function for 10 ms
2067
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2068
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2061
2069
  CONSOLE LOG ENTRY: Running tests
2062
2070
  CONSOLE LOG ENTRY: Started Distance category
2063
2071
  CONSOLE LOG ENTRY: Started Distance needleman-blosum62-del
2064
2072
  CONSOLE LOG ENTRY: Finished Distance needleman-blosum62-del for 1 ms
2065
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2066
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2073
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2074
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2067
2075
  CONSOLE LOG ENTRY: Running tests
2068
2076
  CONSOLE LOG ENTRY: Started Distance category
2069
2077
  CONSOLE LOG ENTRY: Started Distance needleman-blosum62
2070
2078
  CONSOLE LOG ENTRY: Finished Distance needleman-blosum62 for 1 ms
2071
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2072
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2079
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2080
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2073
2081
  CONSOLE LOG ENTRY: Running tests
2074
2082
  CONSOLE LOG ENTRY: Started Distance category
2075
2083
  CONSOLE LOG ENTRY: Started Distance needleman-custom-del
2076
2084
  CONSOLE LOG ENTRY: Finished Distance needleman-custom-del for 1 ms
2077
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2078
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2085
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2086
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2079
2087
  CONSOLE LOG ENTRY: Running tests
2080
2088
  CONSOLE LOG ENTRY: Started Distance category
2081
2089
  CONSOLE LOG ENTRY: Started Distance needleman-custom-half-extend
2082
- CONSOLE LOG ENTRY: Finished Distance needleman-custom-half-extend for 0 ms
2083
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2084
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2090
+ CONSOLE LOG ENTRY: Finished Distance needleman-custom-half-extend for 1 ms
2091
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2092
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2085
2093
  CONSOLE LOG ENTRY: Running tests
2086
2094
  CONSOLE LOG ENTRY: Started Distance category
2087
2095
  CONSOLE LOG ENTRY: Started Distance needleman-custom-same-extend
2088
2096
  CONSOLE LOG ENTRY: Finished Distance needleman-custom-same-extend for 1 ms
2089
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2090
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2097
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2098
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2091
2099
  CONSOLE LOG ENTRY: Running tests
2092
2100
  CONSOLE LOG ENTRY: Started Distance category
2093
2101
  CONSOLE LOG ENTRY: Started Distance needleman-custom-sub
2094
- CONSOLE LOG ENTRY: Finished Distance needleman-custom-sub for 1 ms
2095
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2096
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2102
+ CONSOLE LOG ENTRY: Finished Distance needleman-custom-sub for 0 ms
2103
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2104
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2097
2105
  CONSOLE LOG ENTRY: Running tests
2098
2106
  CONSOLE LOG ENTRY: Started Distance category
2099
2107
  CONSOLE LOG ENTRY: Started Distance needleman-custom-zero-extend
2100
2108
  CONSOLE LOG ENTRY: Finished Distance needleman-custom-zero-extend for 1 ms
2101
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2102
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2109
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2110
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2103
2111
  CONSOLE LOG ENTRY: Running tests
2104
2112
  CONSOLE LOG ENTRY: Started Distance category
2105
2113
  CONSOLE LOG ENTRY: Started Distance protein-distance-function
2106
- CONSOLE LOG ENTRY: Finished Distance protein-distance-function for 10 ms
2107
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2108
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2114
+ CONSOLE LOG ENTRY: Finished Distance protein-distance-function for 9 ms
2115
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2116
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2109
2117
  CONSOLE LOG ENTRY: Running tests
2110
2118
  CONSOLE LOG ENTRY: Started fastaExport category
2111
2119
  CONSOLE LOG ENTRY: Started fastaExport saveAsFastaTest1
2112
- CONSOLE LOG ENTRY: Finished fastaExport saveAsFastaTest1 for 2 ms
2113
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2114
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2120
+ CONSOLE LOG ENTRY: Finished fastaExport saveAsFastaTest1 for 1 ms
2121
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2122
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2115
2123
  CONSOLE LOG ENTRY: Running tests
2116
2124
  CONSOLE LOG ENTRY: Started fastaExport category
2117
2125
  CONSOLE LOG ENTRY: Started fastaExport saveAsFastaTest2
2118
2126
  CONSOLE LOG ENTRY: Finished fastaExport saveAsFastaTest2 for 2 ms
2119
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2120
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2127
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2128
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2121
2129
  CONSOLE LOG ENTRY: Running tests
2122
2130
  CONSOLE LOG ENTRY: Started fastaExport category
2123
2131
  CONSOLE LOG ENTRY: Started fastaExport wrapSequenceMulti
2124
2132
  CONSOLE LOG ENTRY: Finished fastaExport wrapSequenceMulti for 1 ms
2125
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2126
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2133
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2134
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2127
2135
  CONSOLE LOG ENTRY: Running tests
2128
2136
  CONSOLE LOG ENTRY: Started fastaExport category
2129
2137
  CONSOLE LOG ENTRY: Started fastaExport wrapSequenceSingle
2130
2138
  CONSOLE LOG ENTRY: Finished fastaExport wrapSequenceSingle for 0 ms
2131
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2132
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2139
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2140
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2133
2141
  CONSOLE LOG ENTRY: Running tests
2134
2142
  CONSOLE LOG ENTRY: Started fastaFileHandler category
2135
2143
  CONSOLE LOG ENTRY: Started fastaFileHandler testExtraNewlines
2136
2144
  CONSOLE LOG ENTRY: Finished fastaFileHandler testExtraNewlines for 1 ms
2137
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2138
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2145
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2146
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2139
2147
  CONSOLE LOG ENTRY: Running tests
2140
2148
  CONSOLE LOG ENTRY: Started fastaFileHandler category
2141
2149
  CONSOLE LOG ENTRY: Started fastaFileHandler testExtraSpaces
2142
2150
  CONSOLE LOG ENTRY: Finished fastaFileHandler testExtraSpaces for 1 ms
2143
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2144
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2151
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2152
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2145
2153
  CONSOLE LOG ENTRY: Running tests
2146
2154
  CONSOLE LOG ENTRY: Started fastaFileHandler category
2147
2155
  CONSOLE LOG ENTRY: Started fastaFileHandler testNormalFormatting
2148
2156
  CONSOLE LOG ENTRY: Finished fastaFileHandler testNormalFormatting for 0 ms
2149
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2150
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2157
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2158
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2151
2159
  CONSOLE LOG ENTRY: Running tests
2152
2160
  CONSOLE LOG ENTRY: Started helm category
2153
2161
  CONSOLE LOG ENTRY: Started helm single-cyclized-C-0-0
2154
- CONSOLE LOG ENTRY: Finished helm single-cyclized-C-0-0 for 1 ms
2155
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2156
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2162
+ CONSOLE LOG ENTRY: Finished helm single-cyclized-C-0-0 for 2 ms
2163
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2164
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2157
2165
  CONSOLE LOG ENTRY: Running tests
2158
2166
  CONSOLE LOG ENTRY: Started helm category
2159
2167
  CONSOLE LOG ENTRY: Started helm single-cyclized-C-1-1
2160
2168
  CONSOLE LOG ENTRY: Finished helm single-cyclized-C-1-1 for 1 ms
2161
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2162
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2169
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2170
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2163
2171
  CONSOLE LOG ENTRY: Running tests
2164
2172
  CONSOLE LOG ENTRY: Started helm category
2165
2173
  CONSOLE LOG ENTRY: Started helm single-cyclized-C-2-2
2166
2174
  CONSOLE LOG ENTRY: Finished helm single-cyclized-C-2-2 for 1 ms
2167
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2168
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2175
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2176
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2169
2177
  CONSOLE LOG ENTRY: Running tests
2170
2178
  CONSOLE LOG ENTRY: Started helm category
2171
2179
  CONSOLE LOG ENTRY: Started helm single-linear
2172
- CONSOLE LOG ENTRY: Finished helm single-linear for 0 ms
2173
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2174
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2180
+ CONSOLE LOG ENTRY: Finished helm single-linear for 1 ms
2181
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2182
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2175
2183
  CONSOLE LOG ENTRY: Running tests
2176
2184
  CONSOLE LOG ENTRY: Started helm category
2177
2185
  CONSOLE LOG ENTRY: Started helm two-connected-1
2178
- CONSOLE LOG ENTRY: Finished helm two-connected-1 for 0 ms
2179
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2180
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2186
+ CONSOLE LOG ENTRY: Finished helm two-connected-1 for 1 ms
2187
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2188
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2181
2189
  CONSOLE LOG ENTRY: Running tests
2182
2190
  CONSOLE LOG ENTRY: Started helm category
2183
2191
  CONSOLE LOG ENTRY: Started helm two-connected-2
2184
- CONSOLE LOG ENTRY: Finished helm two-connected-2 for 0 ms
2185
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2186
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2192
+ CONSOLE LOG ENTRY: Finished helm two-connected-2 for 1 ms
2193
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2194
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2187
2195
  CONSOLE LOG ENTRY: Running tests
2188
2196
  CONSOLE LOG ENTRY: Started helm category
2189
2197
  CONSOLE LOG ENTRY: Started helm two-cyclized-1-9
2190
- CONSOLE LOG ENTRY: Finished helm two-cyclized-1-9 for 0 ms
2191
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2192
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2198
+ CONSOLE LOG ENTRY: Finished helm two-cyclized-1-9 for 1 ms
2199
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2200
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2193
2201
  CONSOLE LOG ENTRY: Running tests
2194
2202
  CONSOLE LOG ENTRY: Started helm category
2195
2203
  CONSOLE LOG ENTRY: Started helm two-separated-1-5
2196
2204
  CONSOLE LOG ENTRY: Finished helm two-separated-1-5 for 1 ms
2197
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2198
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2205
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2206
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2199
2207
  CONSOLE LOG ENTRY: Running tests
2200
2208
  CONSOLE LOG ENTRY: Started helm category
2201
2209
  CONSOLE LOG ENTRY: Started helm two-separated-4-2
2202
2210
  CONSOLE LOG ENTRY: Finished helm two-separated-4-2 for 1 ms
2203
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2204
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2211
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2212
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2205
2213
  CONSOLE LOG ENTRY: Running tests
2206
2214
  CONSOLE LOG ENTRY: Started helm category
2207
2215
  CONSOLE LOG ENTRY: Started helm two-separated-5-1
2208
- CONSOLE LOG ENTRY: Finished helm two-separated-5-1 for 0 ms
2209
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2210
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2216
+ CONSOLE LOG ENTRY: Finished helm two-separated-5-1 for 1 ms
2217
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2218
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2211
2219
  CONSOLE LOG ENTRY: Running tests
2212
2220
  CONSOLE LOG ENTRY: Started monomerLibraries category
2213
2221
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -2238,11 +2246,11 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2238
2246
  "explicit": [],
2239
2247
  "duplicateMonomerPreferences": {}
2240
2248
  }
2241
- CONSOLE LOG ENTRY: Finished monomerLibraries default for 48 ms
2242
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2249
+ CONSOLE LOG ENTRY: Finished monomerLibraries default for 52 ms
2250
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2243
2251
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
2244
2252
  {}
2245
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2253
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2246
2254
  CONSOLE LOG ENTRY: Running tests
2247
2255
  CONSOLE LOG ENTRY: Started monomerLibraries category
2248
2256
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -2279,10 +2287,10 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2279
2287
  "duplicateMonomerPreferences": {}
2280
2288
  }
2281
2289
  CONSOLE LOG ENTRY: Finished monomerLibraries empty for 2 ms
2282
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2290
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2283
2291
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
2284
2292
  {}
2285
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2293
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2286
2294
  CONSOLE LOG ENTRY: Running tests
2287
2295
  CONSOLE LOG ENTRY: Started monomerLibraries category
2288
2296
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -2312,11 +2320,11 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2312
2320
  }
2313
2321
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
2314
2322
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
2315
- CONSOLE LOG ENTRY: Finished monomerLibraries forTests for 117 ms
2316
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2323
+ CONSOLE LOG ENTRY: Finished monomerLibraries forTests for 51 ms
2324
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2317
2325
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
2318
2326
  {}
2319
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2327
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2320
2328
  CONSOLE LOG ENTRY: Running tests
2321
2329
  CONSOLE LOG ENTRY: Started monomerLibraries category
2322
2330
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -2327,19 +2335,18 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2327
2335
  }
2328
2336
  CONSOLE LOG ENTRY: Started monomerLibraries override
2329
2337
  CONSOLE LOG ENTRY: Finished monomerLibraries override for 1 ms
2330
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2338
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2331
2339
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
2332
2340
  {}
2333
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2341
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2334
2342
  CONSOLE LOG ENTRY: Running tests
2335
2343
  CONSOLE LOG ENTRY: Started MSA category
2336
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2337
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
2338
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2344
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2345
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2339
2346
  CONSOLE LOG ENTRY: Running tests
2340
2347
  CONSOLE LOG ENTRY: Started MSA category
2341
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2342
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2348
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2349
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2343
2350
  CONSOLE LOG ENTRY: Running tests
2344
2351
  CONSOLE LOG ENTRY: Started MSA category
2345
2352
  CONSOLE LOG ENTRY: Started MSA isCorrectLong
@@ -2363,21 +2370,21 @@ Please cite:
2363
2370
  WARNING: AVX2 instruction set not found!
2364
2371
  Kalign will not run optimally.
2365
2372
 
2366
- [2025-02-17 12:44:49] : LOG : Detected protein sequences.
2367
- [2025-02-17 12:44:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2368
- [2025-02-17 12:44:49] : LOG : Detected protein sequences.
2369
- [2025-02-17 12:44:49] : LOG : Detected: 3 sequences.
2370
- [2025-02-17 12:44:49] : LOG : Calculating pairwise distances
2371
- [2025-02-17 12:44:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2372
- [2025-02-17 12:44:49] : LOG : 3 anchors
2373
- [2025-02-17 12:44:49] : LOG : Building guide tree.
2374
- [2025-02-17 12:44:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2375
- [2025-02-17 12:44:49] : LOG : Aligning
2376
- [2025-02-17 12:44:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2373
+ [2025-02-20 16:14:42] : LOG : Detected protein sequences.
2374
+ [2025-02-20 16:14:42] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2375
+ [2025-02-20 16:14:42] : LOG : Detected protein sequences.
2376
+ [2025-02-20 16:14:42] : LOG : Detected: 3 sequences.
2377
+ [2025-02-20 16:14:42] : LOG : Calculating pairwise distances
2378
+ [2025-02-20 16:14:42] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2379
+ [2025-02-20 16:14:42] : LOG : 3 anchors
2380
+ [2025-02-20 16:14:42] : LOG : Building guide tree.
2381
+ [2025-02-20 16:14:42] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2382
+ [2025-02-20 16:14:42] : LOG : Aligning
2383
+ [2025-02-20 16:14:42] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2377
2384
 
2378
- CONSOLE LOG ENTRY: Finished MSA isCorrectLong for 544 ms
2379
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2380
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2385
+ CONSOLE LOG ENTRY: Finished MSA isCorrectLong for 986 ms
2386
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2387
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2381
2388
  CONSOLE LOG ENTRY: Running tests
2382
2389
  CONSOLE LOG ENTRY: Started MSA category
2383
2390
  CONSOLE LOG ENTRY: Started MSA isCorrect
@@ -2401,24 +2408,25 @@ Please cite:
2401
2408
  WARNING: AVX2 instruction set not found!
2402
2409
  Kalign will not run optimally.
2403
2410
 
2404
- [2025-02-17 12:44:50] : LOG : Detected protein sequences.
2405
- [2025-02-17 12:44:50] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2406
- [2025-02-17 12:44:50] : LOG : Detected protein sequences.
2407
- [2025-02-17 12:44:50] : LOG : Detected: 3 sequences.
2408
- [2025-02-17 12:44:50] : LOG : Calculating pairwise distances
2409
- [2025-02-17 12:44:50] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2410
- [2025-02-17 12:44:50] : LOG : 3 anchors
2411
- [2025-02-17 12:44:50] : LOG : Building guide tree.
2412
- [2025-02-17 12:44:50] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2413
- [2025-02-17 12:44:50] : LOG : Aligning
2414
- [2025-02-17 12:44:50] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2411
+ [2025-02-20 16:14:43] : LOG : Detected protein sequences.
2412
+ [2025-02-20 16:14:43] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2413
+ [2025-02-20 16:14:43] : LOG : Detected protein sequences.
2414
+ [2025-02-20 16:14:43] : LOG : Detected: 3 sequences.
2415
+ [2025-02-20 16:14:43] : LOG : Calculating pairwise distances
2416
+ [2025-02-20 16:14:43] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2417
+ [2025-02-20 16:14:43] : LOG : 3 anchors
2418
+ [2025-02-20 16:14:43] : LOG : Building guide tree.
2419
+ [2025-02-20 16:14:43] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2420
+ [2025-02-20 16:14:43] : LOG : Aligning
2421
+ [2025-02-20 16:14:43] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2415
2422
 
2416
- CONSOLE LOG ENTRY: Finished MSA isCorrect for 40 ms
2417
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2418
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2423
+ CONSOLE LOG ENTRY: Finished MSA isCorrect for 49 ms
2424
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2425
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2419
2426
  CONSOLE LOG ENTRY: Running tests
2420
2427
  CONSOLE LOG ENTRY: Started MSA category
2421
2428
  CONSOLE LOG ENTRY: Started MSA isCorrectSeparatorLong
2429
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
2422
2430
  CONSOLE LOG ENTRY:
2423
2431
  Kalign (3.3.1)
2424
2432
 
@@ -2439,21 +2447,21 @@ Please cite:
2439
2447
  WARNING: AVX2 instruction set not found!
2440
2448
  Kalign will not run optimally.
2441
2449
 
2442
- [2025-02-17 12:44:51] : LOG : Detected protein sequences.
2443
- [2025-02-17 12:44:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2444
- [2025-02-17 12:44:51] : LOG : Detected protein sequences.
2445
- [2025-02-17 12:44:51] : LOG : Detected: 3 sequences.
2446
- [2025-02-17 12:44:51] : LOG : Calculating pairwise distances
2447
- [2025-02-17 12:44:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2448
- [2025-02-17 12:44:51] : LOG : 3 anchors
2449
- [2025-02-17 12:44:51] : LOG : Building guide tree.
2450
- [2025-02-17 12:44:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2451
- [2025-02-17 12:44:51] : LOG : Aligning
2452
- [2025-02-17 12:44:51] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2450
+ [2025-02-20 16:14:45] : LOG : Detected protein sequences.
2451
+ [2025-02-20 16:14:45] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2452
+ [2025-02-20 16:14:45] : LOG : Detected protein sequences.
2453
+ [2025-02-20 16:14:45] : LOG : Detected: 3 sequences.
2454
+ [2025-02-20 16:14:45] : LOG : Calculating pairwise distances
2455
+ [2025-02-20 16:14:45] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2456
+ [2025-02-20 16:14:45] : LOG : 3 anchors
2457
+ [2025-02-20 16:14:45] : LOG : Building guide tree.
2458
+ [2025-02-20 16:14:45] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2459
+ [2025-02-20 16:14:45] : LOG : Aligning
2460
+ [2025-02-20 16:14:45] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2453
2461
 
2454
- CONSOLE LOG ENTRY: Finished MSA isCorrectSeparatorLong for 94 ms
2455
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2456
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2462
+ CONSOLE LOG ENTRY: Finished MSA isCorrectSeparatorLong for 102 ms
2463
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2464
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2457
2465
  CONSOLE LOG ENTRY: Running tests
2458
2466
  CONSOLE LOG ENTRY: Started MSA category
2459
2467
  CONSOLE LOG ENTRY: Started MSA isCorrectSeparator
@@ -2477,57 +2485,57 @@ Please cite:
2477
2485
  WARNING: AVX2 instruction set not found!
2478
2486
  Kalign will not run optimally.
2479
2487
 
2480
- [2025-02-17 12:44:52] : LOG : Detected protein sequences.
2481
- [2025-02-17 12:44:52] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2482
- [2025-02-17 12:44:52] : LOG : Detected protein sequences.
2483
- [2025-02-17 12:44:52] : LOG : Detected: 3 sequences.
2484
- [2025-02-17 12:44:52] : LOG : Calculating pairwise distances
2485
- [2025-02-17 12:44:52] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2486
- [2025-02-17 12:44:52] : LOG : 3 anchors
2487
- [2025-02-17 12:44:52] : LOG : Building guide tree.
2488
- [2025-02-17 12:44:52] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2489
- [2025-02-17 12:44:52] : LOG : Aligning
2490
- [2025-02-17 12:44:52] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2488
+ [2025-02-20 16:14:46] : LOG : Detected protein sequences.
2489
+ [2025-02-20 16:14:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2490
+ [2025-02-20 16:14:46] : LOG : Detected protein sequences.
2491
+ [2025-02-20 16:14:46] : LOG : Detected: 3 sequences.
2492
+ [2025-02-20 16:14:46] : LOG : Calculating pairwise distances
2493
+ [2025-02-20 16:14:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2494
+ [2025-02-20 16:14:46] : LOG : 3 anchors
2495
+ [2025-02-20 16:14:46] : LOG : Building guide tree.
2496
+ [2025-02-20 16:14:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2497
+ [2025-02-20 16:14:46] : LOG : Aligning
2498
+ [2025-02-20 16:14:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2491
2499
 
2492
- CONSOLE LOG ENTRY: Finished MSA isCorrectSeparator for 117 ms
2493
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2494
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2500
+ CONSOLE LOG ENTRY: Finished MSA isCorrectSeparator for 104 ms
2501
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2502
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2495
2503
  CONSOLE LOG ENTRY: Running tests
2496
2504
  CONSOLE LOG ENTRY: Started Palettes category
2497
2505
  CONSOLE LOG ENTRY: Started Palettes testPaletteAA
2498
2506
  CONSOLE LOG ENTRY: Finished Palettes testPaletteAA for 1 ms
2499
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2500
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2507
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2508
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2501
2509
  CONSOLE LOG ENTRY: Running tests
2502
2510
  CONSOLE LOG ENTRY: Started Palettes category
2503
2511
  CONSOLE LOG ENTRY: Started Palettes testPaletteN
2504
2512
  CONSOLE LOG ENTRY: Finished Palettes testPaletteN for 0 ms
2505
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2506
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2513
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2514
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2507
2515
  CONSOLE LOG ENTRY: Running tests
2508
2516
  CONSOLE LOG ENTRY: Started Palettes category
2509
2517
  CONSOLE LOG ENTRY: Started Palettes testPalettePtMe
2510
2518
  CONSOLE LOG ENTRY: Finished Palettes testPalettePtMe for 1 ms
2511
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2512
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2519
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2520
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2513
2521
  CONSOLE LOG ENTRY: Running tests
2514
2522
  CONSOLE LOG ENTRY: Started PepSeA category
2515
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2516
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2523
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2524
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2517
2525
  CONSOLE LOG ENTRY: Running tests
2518
2526
  CONSOLE LOG ENTRY: Started PepSeA category
2519
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2520
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2527
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2528
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2521
2529
  CONSOLE LOG ENTRY: Running tests
2522
2530
  CONSOLE LOG ENTRY: Started PepSeA category
2523
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2524
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2531
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2532
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2525
2533
  CONSOLE LOG ENTRY: Running tests
2526
2534
  CONSOLE LOG ENTRY: Started renderers category
2527
2535
  CONSOLE LOG ENTRY: Started renderers afterConvert
2528
2536
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fsamples%2FFASTA_PT.csv?&&flag=9
2529
- CONSOLE LOG ENTRY: Finished renderers afterConvert for 565 ms
2530
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2537
+ CONSOLE LOG ENTRY: Finished renderers afterConvert for 647 ms
2538
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2531
2539
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
2532
2540
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2533
2541
  {
@@ -2576,13 +2584,14 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2576
2584
  "explicit": [],
2577
2585
  "duplicateMonomerPreferences": {}
2578
2586
  }
2579
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2587
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
2588
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2580
2589
  CONSOLE LOG ENTRY: Running tests
2581
2590
  CONSOLE LOG ENTRY: Started renderers category
2582
2591
  CONSOLE LOG ENTRY: Started renderers afterConvertToHelm
2583
2592
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fsamples%2FFASTA_PT.csv?&&flag=9
2584
- CONSOLE LOG ENTRY: Finished renderers afterConvertToHelm for 302 ms
2585
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2593
+ CONSOLE LOG ENTRY: Finished renderers afterConvertToHelm for 261 ms
2594
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2586
2595
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
2587
2596
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2588
2597
  {
@@ -2631,7 +2640,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2631
2640
  "explicit": [],
2632
2641
  "duplicateMonomerPreferences": {}
2633
2642
  }
2634
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2643
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2635
2644
  CONSOLE LOG ENTRY: Running tests
2636
2645
  CONSOLE LOG ENTRY: Started renderers category
2637
2646
  CONSOLE LOG ENTRY: Started renderers afterMsa
@@ -2658,20 +2667,20 @@ Please cite:
2658
2667
  WARNING: AVX2 instruction set not found!
2659
2668
  Kalign will not run optimally.
2660
2669
 
2661
- [2025-02-17 12:45:03] : LOG : Detected protein sequences.
2662
- [2025-02-17 12:45:03] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2663
- [2025-02-17 12:45:03] : LOG : Detected protein sequences.
2664
- [2025-02-17 12:45:03] : LOG : Detected: 64 sequences.
2665
- [2025-02-17 12:45:03] : LOG : Calculating pairwise distances
2666
- [2025-02-17 12:45:03] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00
2667
- [2025-02-17 12:45:03] : LOG : 32 anchors
2668
- [2025-02-17 12:45:03] : LOG : Building guide tree.
2669
- [2025-02-17 12:45:03] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
2670
- [2025-02-17 12:45:03] : LOG : Aligning
2671
- [2025-02-17 12:45:03] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00
2670
+ [2025-02-20 16:14:57] : LOG : Detected protein sequences.
2671
+ [2025-02-20 16:14:57] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
2672
+ [2025-02-20 16:14:57] : LOG : Detected protein sequences.
2673
+ [2025-02-20 16:14:57] : LOG : Detected: 64 sequences.
2674
+ [2025-02-20 16:14:57] : LOG : Calculating pairwise distances
2675
+ [2025-02-20 16:14:57] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00
2676
+ [2025-02-20 16:14:57] : LOG : 32 anchors
2677
+ [2025-02-20 16:14:57] : LOG : Building guide tree.
2678
+ [2025-02-20 16:14:57] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
2679
+ [2025-02-20 16:14:57] : LOG : Aligning
2680
+ [2025-02-20 16:14:57] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00
2672
2681
 
2673
- CONSOLE LOG ENTRY: Finished renderers afterMsa for 657 ms
2674
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2682
+ CONSOLE LOG ENTRY: Finished renderers afterMsa for 442 ms
2683
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2675
2684
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
2676
2685
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2677
2686
  {
@@ -2720,13 +2729,13 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2720
2729
  "explicit": [],
2721
2730
  "duplicateMonomerPreferences": {}
2722
2731
  }
2723
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2732
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2724
2733
  CONSOLE LOG ENTRY: Running tests
2725
2734
  CONSOLE LOG ENTRY: Started renderers category
2726
2735
  CONSOLE LOG ENTRY: Started renderers long sequence performance
2727
- CONSOLE LOG ENTRY: Performance test: Long sequences: 1181ms
2728
- CONSOLE LOG ENTRY: Finished renderers long sequence performance for 1188 ms
2729
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2736
+ CONSOLE LOG ENTRY: Performance test: Long sequences: 1250ms
2737
+ CONSOLE LOG ENTRY: Finished renderers long sequence performance for 1263 ms
2738
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2730
2739
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
2731
2740
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2732
2741
  {
@@ -2754,7 +2763,6 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2754
2763
  }
2755
2764
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
2756
2765
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
2757
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
2758
2766
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
2759
2767
  {
2760
2768
  "exclude": [],
@@ -2776,13 +2784,13 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2776
2784
  "explicit": [],
2777
2785
  "duplicateMonomerPreferences": {}
2778
2786
  }
2779
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2787
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2780
2788
  CONSOLE LOG ENTRY: Running tests
2781
2789
  CONSOLE LOG ENTRY: Started renderers category
2782
2790
  CONSOLE LOG ENTRY: Started renderers many sequence performance
2783
- CONSOLE LOG ENTRY: Performance test: Many sequences: 157ms
2784
- CONSOLE LOG ENTRY: Finished renderers many sequence performance for 372 ms
2785
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2791
+ CONSOLE LOG ENTRY: Performance test: Many sequences: 391ms
2792
+ CONSOLE LOG ENTRY: Finished renderers many sequence performance for 884 ms
2793
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2786
2794
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
2787
2795
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2788
2796
  {
@@ -2831,7 +2839,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2831
2839
  "explicit": [],
2832
2840
  "duplicateMonomerPreferences": {}
2833
2841
  }
2834
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2842
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2835
2843
  CONSOLE LOG ENTRY: Running tests
2836
2844
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
2837
2845
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -2861,8 +2869,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2861
2869
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
2862
2870
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
2863
2871
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer getCellMonomerLengths-mono1
2864
- CONSOLE LOG ENTRY: Finished renderers: monomerPlacer getCellMonomerLengths-mono1 for 17 ms
2865
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2872
+ CONSOLE LOG ENTRY: Finished renderers: monomerPlacer getCellMonomerLengths-mono1 for 9 ms
2873
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2866
2874
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
2867
2875
  {
2868
2876
  "exclude": [],
@@ -2884,7 +2892,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2884
2892
  "explicit": [],
2885
2893
  "duplicateMonomerPreferences": {}
2886
2894
  }
2887
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2895
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
2896
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2888
2897
  CONSOLE LOG ENTRY: Running tests
2889
2898
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
2890
2899
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -2915,7 +2924,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
2915
2924
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
2916
2925
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer getCellMonomerLengths-monoWithGapColumn
2917
2926
  CONSOLE LOG ENTRY: Finished renderers: monomerPlacer getCellMonomerLengths-monoWithGapColumn for 10 ms
2918
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2927
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2919
2928
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
2920
2929
  {
2921
2930
  "exclude": [],
@@ -2937,7 +2946,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2937
2946
  "explicit": [],
2938
2947
  "duplicateMonomerPreferences": {}
2939
2948
  }
2940
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2949
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2941
2950
  CONSOLE LOG ENTRY: Running tests
2942
2951
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
2943
2952
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -2967,8 +2976,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2967
2976
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
2968
2977
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
2969
2978
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer getCellMonomerLengths-monoWithGaps
2970
- CONSOLE LOG ENTRY: Finished renderers: monomerPlacer getCellMonomerLengths-monoWithGaps for 7 ms
2971
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
2979
+ CONSOLE LOG ENTRY: Finished renderers: monomerPlacer getCellMonomerLengths-monoWithGaps for 8 ms
2980
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2972
2981
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
2973
2982
  {
2974
2983
  "exclude": [],
@@ -2990,7 +2999,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
2990
2999
  "explicit": [],
2991
3000
  "duplicateMonomerPreferences": {}
2992
3001
  }
2993
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3002
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
2994
3003
  CONSOLE LOG ENTRY: Running tests
2995
3004
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
2996
3005
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -3020,8 +3029,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3020
3029
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
3021
3030
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
3022
3031
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer getPosition-fastaMsa
3023
- CONSOLE LOG ENTRY: Finished renderers: monomerPlacer getPosition-fastaMsa for 10 ms
3024
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3032
+ CONSOLE LOG ENTRY: Finished renderers: monomerPlacer getPosition-fastaMsa for 14 ms
3033
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3025
3034
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
3026
3035
  {
3027
3036
  "exclude": [],
@@ -3043,7 +3052,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3043
3052
  "explicit": [],
3044
3053
  "duplicateMonomerPreferences": {}
3045
3054
  }
3046
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3055
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3047
3056
  CONSOLE LOG ENTRY: Running tests
3048
3057
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
3049
3058
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -3073,8 +3082,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3073
3082
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
3074
3083
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
3075
3084
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer getPosition-splitterMsa
3076
- CONSOLE LOG ENTRY: Finished renderers: monomerPlacer getPosition-splitterMsa for 12 ms
3077
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3085
+ CONSOLE LOG ENTRY: Finished renderers: monomerPlacer getPosition-splitterMsa for 16 ms
3086
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3078
3087
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
3079
3088
  {
3080
3089
  "exclude": [],
@@ -3096,7 +3105,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3096
3105
  "explicit": [],
3097
3106
  "duplicateMonomerPreferences": {}
3098
3107
  }
3099
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3108
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3100
3109
  CONSOLE LOG ENTRY: Running tests
3101
3110
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
3102
3111
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -3126,8 +3135,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3126
3135
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
3127
3136
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
3128
3137
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer getPosition-splitter
3129
- CONSOLE LOG ENTRY: Finished renderers: monomerPlacer getPosition-splitter for 8 ms
3130
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3138
+ CONSOLE LOG ENTRY: Finished renderers: monomerPlacer getPosition-splitter for 10 ms
3139
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3131
3140
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
3132
3141
  {
3133
3142
  "exclude": [],
@@ -3149,8 +3158,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3149
3158
  "explicit": [],
3150
3159
  "duplicateMonomerPreferences": {}
3151
3160
  }
3152
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
3153
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3161
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3154
3162
  CONSOLE LOG ENTRY: Running tests
3155
3163
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
3156
3164
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -3180,8 +3188,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3180
3188
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
3181
3189
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
3182
3190
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer hitBounds-c0left
3183
- CONSOLE LOG ENTRY: Finished renderers: monomerPlacer hitBounds-c0left for 1 ms
3184
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3191
+ CONSOLE LOG ENTRY: Finished renderers: monomerPlacer hitBounds-c0left for 0 ms
3192
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3185
3193
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
3186
3194
  {
3187
3195
  "exclude": [],
@@ -3203,7 +3211,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3203
3211
  "explicit": [],
3204
3212
  "duplicateMonomerPreferences": {}
3205
3213
  }
3206
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3214
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3207
3215
  CONSOLE LOG ENTRY: Running tests
3208
3216
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
3209
3217
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -3234,7 +3242,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
3234
3242
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
3235
3243
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer hitBounds-c0mid
3236
3244
  CONSOLE LOG ENTRY: Finished renderers: monomerPlacer hitBounds-c0mid for 0 ms
3237
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3245
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3238
3246
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
3239
3247
  {
3240
3248
  "exclude": [],
@@ -3256,7 +3264,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3256
3264
  "explicit": [],
3257
3265
  "duplicateMonomerPreferences": {}
3258
3266
  }
3259
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3267
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3260
3268
  CONSOLE LOG ENTRY: Running tests
3261
3269
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
3262
3270
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -3287,7 +3295,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
3287
3295
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
3288
3296
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer hitBounds-c0right
3289
3297
  CONSOLE LOG ENTRY: Finished renderers: monomerPlacer hitBounds-c0right for 1 ms
3290
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3298
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3291
3299
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
3292
3300
  {
3293
3301
  "exclude": [],
@@ -3309,7 +3317,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3309
3317
  "explicit": [],
3310
3318
  "duplicateMonomerPreferences": {}
3311
3319
  }
3312
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3320
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
3321
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3313
3322
  CONSOLE LOG ENTRY: Running tests
3314
3323
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
3315
3324
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -3340,7 +3349,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
3340
3349
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
3341
3350
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer hitBounds-c1left
3342
3351
  CONSOLE LOG ENTRY: Finished renderers: monomerPlacer hitBounds-c1left for 0 ms
3343
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3352
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3344
3353
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
3345
3354
  {
3346
3355
  "exclude": [],
@@ -3362,7 +3371,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3362
3371
  "explicit": [],
3363
3372
  "duplicateMonomerPreferences": {}
3364
3373
  }
3365
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3374
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3366
3375
  CONSOLE LOG ENTRY: Running tests
3367
3376
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
3368
3377
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -3392,8 +3401,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3392
3401
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
3393
3402
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
3394
3403
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer hitBounds-c2right
3395
- CONSOLE LOG ENTRY: Finished renderers: monomerPlacer hitBounds-c2right for 0 ms
3396
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3404
+ CONSOLE LOG ENTRY: Finished renderers: monomerPlacer hitBounds-c2right for 1 ms
3405
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3397
3406
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
3398
3407
  {
3399
3408
  "exclude": [],
@@ -3415,7 +3424,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3415
3424
  "explicit": [],
3416
3425
  "duplicateMonomerPreferences": {}
3417
3426
  }
3418
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3427
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3419
3428
  CONSOLE LOG ENTRY: Running tests
3420
3429
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
3421
3430
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -3446,7 +3455,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
3446
3455
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
3447
3456
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer hitBounds-c4left
3448
3457
  CONSOLE LOG ENTRY: Finished renderers: monomerPlacer hitBounds-c4left for 1 ms
3449
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3458
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3450
3459
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
3451
3460
  {
3452
3461
  "exclude": [],
@@ -3468,7 +3477,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3468
3477
  "explicit": [],
3469
3478
  "duplicateMonomerPreferences": {}
3470
3479
  }
3471
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3480
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3472
3481
  CONSOLE LOG ENTRY: Running tests
3473
3482
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
3474
3483
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -3499,7 +3508,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
3499
3508
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
3500
3509
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer hitBounds-c4right
3501
3510
  CONSOLE LOG ENTRY: Finished renderers: monomerPlacer hitBounds-c4right for 0 ms
3502
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3511
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3503
3512
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
3504
3513
  {
3505
3514
  "exclude": [],
@@ -3521,7 +3530,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3521
3530
  "explicit": [],
3522
3531
  "duplicateMonomerPreferences": {}
3523
3532
  }
3524
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3533
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3525
3534
  CONSOLE LOG ENTRY: Running tests
3526
3535
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
3527
3536
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -3552,7 +3561,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
3552
3561
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
3553
3562
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer hitBounds-left
3554
3563
  CONSOLE LOG ENTRY: Finished renderers: monomerPlacer hitBounds-left for 1 ms
3555
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3564
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3556
3565
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
3557
3566
  {
3558
3567
  "exclude": [],
@@ -3574,7 +3583,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3574
3583
  "explicit": [],
3575
3584
  "duplicateMonomerPreferences": {}
3576
3585
  }
3577
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3586
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3578
3587
  CONSOLE LOG ENTRY: Running tests
3579
3588
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
3580
3589
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -3605,7 +3614,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
3605
3614
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
3606
3615
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer hitBounds-max
3607
3616
  CONSOLE LOG ENTRY: Finished renderers: monomerPlacer hitBounds-max for 1 ms
3608
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3617
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3609
3618
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
3610
3619
  {
3611
3620
  "exclude": [],
@@ -3627,8 +3636,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3627
3636
  "explicit": [],
3628
3637
  "duplicateMonomerPreferences": {}
3629
3638
  }
3630
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
3631
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3639
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3632
3640
  CONSOLE LOG ENTRY: Running tests
3633
3641
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
3634
3642
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -3659,7 +3667,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
3659
3667
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
3660
3668
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer hitBounds-right
3661
3669
  CONSOLE LOG ENTRY: Finished renderers: monomerPlacer hitBounds-right for 1 ms
3662
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3670
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3663
3671
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
3664
3672
  {
3665
3673
  "exclude": [],
@@ -3681,12 +3689,12 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3681
3689
  "explicit": [],
3682
3690
  "duplicateMonomerPreferences": {}
3683
3691
  }
3684
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3692
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3685
3693
  CONSOLE LOG ENTRY: Running tests
3686
3694
  CONSOLE LOG ENTRY: Started renderers category
3687
3695
  CONSOLE LOG ENTRY: Started renderers rendererMacromoleculeDifference
3688
- CONSOLE LOG ENTRY: Finished renderers rendererMacromoleculeDifference for 111 ms
3689
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3696
+ CONSOLE LOG ENTRY: Finished renderers rendererMacromoleculeDifference for 140 ms
3697
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3690
3698
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
3691
3699
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3692
3700
  {
@@ -3735,13 +3743,14 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3735
3743
  "explicit": [],
3736
3744
  "duplicateMonomerPreferences": {}
3737
3745
  }
3738
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3746
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
3747
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3739
3748
  CONSOLE LOG ENTRY: Running tests
3740
3749
  CONSOLE LOG ENTRY: Started renderers category
3741
3750
  CONSOLE LOG ENTRY: Started renderers rendererMacromoleculeFasta
3742
3751
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fsamples%2FFASTA.csv?&&flag=9
3743
- CONSOLE LOG ENTRY: Finished renderers rendererMacromoleculeFasta for 148 ms
3744
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3752
+ CONSOLE LOG ENTRY: Finished renderers rendererMacromoleculeFasta for 143 ms
3753
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3745
3754
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
3746
3755
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3747
3756
  {
@@ -3790,13 +3799,13 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3790
3799
  "explicit": [],
3791
3800
  "duplicateMonomerPreferences": {}
3792
3801
  }
3793
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3802
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3794
3803
  CONSOLE LOG ENTRY: Running tests
3795
3804
  CONSOLE LOG ENTRY: Started renderers category
3796
3805
  CONSOLE LOG ENTRY: Started renderers rendererMacromoleculeSeparator
3797
3806
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fsamples%2FSEPARATOR_PT.csv?&&flag=9
3798
- CONSOLE LOG ENTRY: Finished renderers rendererMacromoleculeSeparator for 179 ms
3799
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3807
+ CONSOLE LOG ENTRY: Finished renderers rendererMacromoleculeSeparator for 170 ms
3808
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3800
3809
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
3801
3810
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3802
3811
  {
@@ -3845,10 +3854,10 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3845
3854
  "explicit": [],
3846
3855
  "duplicateMonomerPreferences": {}
3847
3856
  }
3848
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3857
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3849
3858
  CONSOLE LOG ENTRY: Running tests
3850
3859
  CONSOLE LOG ENTRY: Started renderers category
3851
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3860
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3852
3861
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
3853
3862
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3854
3863
  {
@@ -3897,12 +3906,12 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3897
3906
  "explicit": [],
3898
3907
  "duplicateMonomerPreferences": {}
3899
3908
  }
3900
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3909
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3901
3910
  CONSOLE LOG ENTRY: Running tests
3902
3911
  CONSOLE LOG ENTRY: Started renderers category
3903
3912
  CONSOLE LOG ENTRY: Started renderers selectRendererBySemType
3904
- CONSOLE LOG ENTRY: Finished renderers selectRendererBySemType for 157 ms
3905
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3913
+ CONSOLE LOG ENTRY: Finished renderers selectRendererBySemType for 165 ms
3914
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3906
3915
  CONSOLE LOG ENTRY: Started renderers: monomerPlacer category
3907
3916
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3908
3917
  {
@@ -3951,7 +3960,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
3951
3960
  "explicit": [],
3952
3961
  "duplicateMonomerPreferences": {}
3953
3962
  }
3954
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3963
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3955
3964
  CONSOLE LOG ENTRY: Running tests
3956
3965
  CONSOLE LOG ENTRY: Started Scoring category
3957
3966
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -3982,7 +3991,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
3982
3991
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
3983
3992
  CONSOLE LOG ENTRY: Started Scoring Identity-longReference
3984
3993
  CONSOLE LOG ENTRY: Finished Scoring Identity-longReference for 6 ms
3985
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
3994
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
3986
3995
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
3987
3996
  {
3988
3997
  "exclude": [],
@@ -4004,7 +4013,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4004
4013
  "explicit": [],
4005
4014
  "duplicateMonomerPreferences": {}
4006
4015
  }
4007
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4016
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4008
4017
  CONSOLE LOG ENTRY: Running tests
4009
4018
  CONSOLE LOG ENTRY: Started Scoring category
4010
4019
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -4034,8 +4043,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4034
4043
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
4035
4044
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
4036
4045
  CONSOLE LOG ENTRY: Started Scoring Identity-shortReference
4037
- CONSOLE LOG ENTRY: Finished Scoring Identity-shortReference for 5 ms
4038
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4046
+ CONSOLE LOG ENTRY: Finished Scoring Identity-shortReference for 4 ms
4047
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4039
4048
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
4040
4049
  {
4041
4050
  "exclude": [],
@@ -4057,8 +4066,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4057
4066
  "explicit": [],
4058
4067
  "duplicateMonomerPreferences": {}
4059
4068
  }
4060
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
4061
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4069
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4062
4070
  CONSOLE LOG ENTRY: Running tests
4063
4071
  CONSOLE LOG ENTRY: Started Scoring category
4064
4072
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -4088,8 +4096,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4088
4096
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
4089
4097
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
4090
4098
  CONSOLE LOG ENTRY: Started Scoring Identity
4091
- CONSOLE LOG ENTRY: Finished Scoring Identity for 4 ms
4092
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4099
+ CONSOLE LOG ENTRY: Finished Scoring Identity for 6 ms
4100
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4093
4101
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
4094
4102
  {
4095
4103
  "exclude": [],
@@ -4111,7 +4119,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4111
4119
  "explicit": [],
4112
4120
  "duplicateMonomerPreferences": {}
4113
4121
  }
4114
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4122
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4115
4123
  CONSOLE LOG ENTRY: Running tests
4116
4124
  CONSOLE LOG ENTRY: Started Scoring category
4117
4125
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -4142,8 +4150,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
4142
4150
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
4143
4151
  CONSOLE LOG ENTRY: Started Scoring Similarity
4144
4152
  CONSOLE LOG ENTRY: RDKit Service was initialized
4145
- CONSOLE LOG ENTRY: Finished Scoring Similarity for 585 ms
4146
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4153
+ CONSOLE LOG ENTRY: Finished Scoring Similarity for 824 ms
4154
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4147
4155
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
4148
4156
  {
4149
4157
  "exclude": [],
@@ -4165,12 +4173,13 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4165
4173
  "explicit": [],
4166
4174
  "duplicateMonomerPreferences": {}
4167
4175
  }
4168
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4176
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
4177
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4169
4178
  CONSOLE LOG ENTRY: Running tests
4170
4179
  CONSOLE LOG ENTRY: Started SeqHandler category
4171
4180
  CONSOLE LOG ENTRY: Started SeqHandler column-version
4172
- CONSOLE LOG ENTRY: Finished SeqHandler column-version for 9 ms
4173
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4181
+ CONSOLE LOG ENTRY: Finished SeqHandler column-version for 13 ms
4182
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4174
4183
  CONSOLE LOG ENTRY: Started SeqHandler: splitted category
4175
4184
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion category
4176
4185
  CONSOLE LOG ENTRY: Started SeqHandler: getHelm category
@@ -4221,7 +4230,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4221
4230
  "explicit": [],
4222
4231
  "duplicateMonomerPreferences": {}
4223
4232
  }
4224
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4233
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4225
4234
  CONSOLE LOG ENTRY: Running tests
4226
4235
  CONSOLE LOG ENTRY: Started SeqHandler: getHelm category
4227
4236
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -4251,8 +4260,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4251
4260
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
4252
4261
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
4253
4262
  CONSOLE LOG ENTRY: Started SeqHandler: getHelm fasta
4254
- CONSOLE LOG ENTRY: Finished SeqHandler: getHelm fasta for 21 ms
4255
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4263
+ CONSOLE LOG ENTRY: Finished SeqHandler: getHelm fasta for 23 ms
4264
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4256
4265
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
4257
4266
  {
4258
4267
  "exclude": [],
@@ -4274,7 +4283,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4274
4283
  "explicit": [],
4275
4284
  "duplicateMonomerPreferences": {}
4276
4285
  }
4277
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4286
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4278
4287
  CONSOLE LOG ENTRY: Running tests
4279
4288
  CONSOLE LOG ENTRY: Started SeqHandler: getHelm category
4280
4289
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -4304,8 +4313,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4304
4313
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
4305
4314
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
4306
4315
  CONSOLE LOG ENTRY: Started SeqHandler: getHelm helm-cyclic
4307
- CONSOLE LOG ENTRY: Finished SeqHandler: getHelm helm-cyclic for 4 ms
4308
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4316
+ CONSOLE LOG ENTRY: Finished SeqHandler: getHelm helm-cyclic for 7 ms
4317
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4309
4318
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
4310
4319
  {
4311
4320
  "exclude": [],
@@ -4327,7 +4336,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4327
4336
  "explicit": [],
4328
4337
  "duplicateMonomerPreferences": {}
4329
4338
  }
4330
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4339
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4331
4340
  CONSOLE LOG ENTRY: Running tests
4332
4341
  CONSOLE LOG ENTRY: Started SeqHandler: getHelm category
4333
4342
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -4357,8 +4366,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4357
4366
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
4358
4367
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
4359
4368
  CONSOLE LOG ENTRY: Started SeqHandler: getHelm helm
4360
- CONSOLE LOG ENTRY: Finished SeqHandler: getHelm helm for 8 ms
4361
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4369
+ CONSOLE LOG ENTRY: Finished SeqHandler: getHelm helm for 7 ms
4370
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4362
4371
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
4363
4372
  {
4364
4373
  "exclude": [],
@@ -4380,7 +4389,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4380
4389
  "explicit": [],
4381
4390
  "duplicateMonomerPreferences": {}
4382
4391
  }
4383
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4392
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4384
4393
  CONSOLE LOG ENTRY: Running tests
4385
4394
  CONSOLE LOG ENTRY: Started SeqHandler: getHelm category
4386
4395
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -4410,8 +4419,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4410
4419
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
4411
4420
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
4412
4421
  CONSOLE LOG ENTRY: Started SeqHandler: getHelm separator
4413
- CONSOLE LOG ENTRY: Finished SeqHandler: getHelm separator for 7 ms
4414
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4422
+ CONSOLE LOG ENTRY: Finished SeqHandler: getHelm separator for 32 ms
4423
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4415
4424
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
4416
4425
  {
4417
4426
  "exclude": [],
@@ -4433,49 +4442,49 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4433
4442
  "explicit": [],
4434
4443
  "duplicateMonomerPreferences": {}
4435
4444
  }
4436
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4445
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4437
4446
  CONSOLE LOG ENTRY: Running tests
4438
4447
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion category
4439
4448
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion fastaDna-idx
4440
- CONSOLE LOG ENTRY: Finished SeqHandler: getRegion fastaDna-idx for 6 ms
4441
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4442
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
4443
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4449
+ CONSOLE LOG ENTRY: Finished SeqHandler: getRegion fastaDna-idx for 10 ms
4450
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4451
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4444
4452
  CONSOLE LOG ENTRY: Running tests
4445
4453
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion category
4446
4454
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion fastaDna-positionNames
4447
- CONSOLE LOG ENTRY: Finished SeqHandler: getRegion fastaDna-positionNames for 8 ms
4448
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4449
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4455
+ CONSOLE LOG ENTRY: Finished SeqHandler: getRegion fastaDna-positionNames for 15 ms
4456
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4457
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4450
4458
  CONSOLE LOG ENTRY: Running tests
4451
4459
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion category
4452
4460
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion helm-idx
4453
- CONSOLE LOG ENTRY: Finished SeqHandler: getRegion helm-idx for 6 ms
4454
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4455
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4461
+ CONSOLE LOG ENTRY: Finished SeqHandler: getRegion helm-idx for 9 ms
4462
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4463
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
4464
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4456
4465
  CONSOLE LOG ENTRY: Running tests
4457
4466
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion category
4458
4467
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion helm-positionNames
4459
- CONSOLE LOG ENTRY: Finished SeqHandler: getRegion helm-positionNames for 9 ms
4460
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4461
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4468
+ CONSOLE LOG ENTRY: Finished SeqHandler: getRegion helm-positionNames for 8 ms
4469
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4470
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4462
4471
  CONSOLE LOG ENTRY: Running tests
4463
4472
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion category
4464
4473
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion separatorPt-idx
4465
- CONSOLE LOG ENTRY: Finished SeqHandler: getRegion separatorPt-idx for 5 ms
4466
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4467
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4474
+ CONSOLE LOG ENTRY: Finished SeqHandler: getRegion separatorPt-idx for 9 ms
4475
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4476
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4468
4477
  CONSOLE LOG ENTRY: Running tests
4469
4478
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion category
4470
4479
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion separatorPt-positionNames
4471
- CONSOLE LOG ENTRY: Finished SeqHandler: getRegion separatorPt-positionNames for 9 ms
4472
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4473
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4480
+ CONSOLE LOG ENTRY: Finished SeqHandler: getRegion separatorPt-positionNames for 10 ms
4481
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4482
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4474
4483
  CONSOLE LOG ENTRY: Running tests
4475
4484
  CONSOLE LOG ENTRY: Started SeqHandler category
4476
4485
  CONSOLE LOG ENTRY: Started SeqHandler Seq-Fasta-MSA-units
4477
4486
  CONSOLE LOG ENTRY: Finished SeqHandler Seq-Fasta-MSA-units for 8 ms
4478
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4487
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4479
4488
  CONSOLE LOG ENTRY: Started SeqHandler: splitted category
4480
4489
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion category
4481
4490
  CONSOLE LOG ENTRY: Started SeqHandler: getHelm category
@@ -4526,12 +4535,12 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4526
4535
  "explicit": [],
4527
4536
  "duplicateMonomerPreferences": {}
4528
4537
  }
4529
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4538
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4530
4539
  CONSOLE LOG ENTRY: Running tests
4531
4540
  CONSOLE LOG ENTRY: Started SeqHandler category
4532
4541
  CONSOLE LOG ENTRY: Started SeqHandler Seq-Fasta-MSA
4533
- CONSOLE LOG ENTRY: Finished SeqHandler Seq-Fasta-MSA for 13 ms
4534
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4542
+ CONSOLE LOG ENTRY: Finished SeqHandler Seq-Fasta-MSA for 8 ms
4543
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4535
4544
  CONSOLE LOG ENTRY: Started SeqHandler: splitted category
4536
4545
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion category
4537
4546
  CONSOLE LOG ENTRY: Started SeqHandler: getHelm category
@@ -4582,12 +4591,12 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4582
4591
  "explicit": [],
4583
4592
  "duplicateMonomerPreferences": {}
4584
4593
  }
4585
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4594
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4586
4595
  CONSOLE LOG ENTRY: Running tests
4587
4596
  CONSOLE LOG ENTRY: Started SeqHandler category
4588
4597
  CONSOLE LOG ENTRY: Started SeqHandler Seq-Fasta-units
4589
4598
  CONSOLE LOG ENTRY: Finished SeqHandler Seq-Fasta-units for 10 ms
4590
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4599
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4591
4600
  CONSOLE LOG ENTRY: Started SeqHandler: splitted category
4592
4601
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion category
4593
4602
  CONSOLE LOG ENTRY: Started SeqHandler: getHelm category
@@ -4638,12 +4647,12 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4638
4647
  "explicit": [],
4639
4648
  "duplicateMonomerPreferences": {}
4640
4649
  }
4641
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4650
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4642
4651
  CONSOLE LOG ENTRY: Running tests
4643
4652
  CONSOLE LOG ENTRY: Started SeqHandler category
4644
4653
  CONSOLE LOG ENTRY: Started SeqHandler Seq-Fasta
4645
- CONSOLE LOG ENTRY: Finished SeqHandler Seq-Fasta for 8 ms
4646
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4654
+ CONSOLE LOG ENTRY: Finished SeqHandler Seq-Fasta for 19 ms
4655
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4647
4656
  CONSOLE LOG ENTRY: Started SeqHandler: splitted category
4648
4657
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion category
4649
4658
  CONSOLE LOG ENTRY: Started SeqHandler: getHelm category
@@ -4694,13 +4703,12 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4694
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  "explicit": [],
4695
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  "duplicateMonomerPreferences": {}
4696
4705
  }
4697
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
4698
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4706
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4699
4707
  CONSOLE LOG ENTRY: Running tests
4700
4708
  CONSOLE LOG ENTRY: Started SeqHandler category
4701
4709
  CONSOLE LOG ENTRY: Started SeqHandler Seq-Helm
4702
4710
  CONSOLE LOG ENTRY: Finished SeqHandler Seq-Helm for 9 ms
4703
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4711
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4704
4712
  CONSOLE LOG ENTRY: Started SeqHandler: splitted category
4705
4713
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion category
4706
4714
  CONSOLE LOG ENTRY: Started SeqHandler: getHelm category
@@ -4751,12 +4759,12 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4751
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  "explicit": [],
4752
4760
  "duplicateMonomerPreferences": {}
4753
4761
  }
4754
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4762
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4755
4763
  CONSOLE LOG ENTRY: Running tests
4756
4764
  CONSOLE LOG ENTRY: Started SeqHandler category
4757
4765
  CONSOLE LOG ENTRY: Started SeqHandler Seq-UN-auto
4758
- CONSOLE LOG ENTRY: Finished SeqHandler Seq-UN-auto for 16 ms
4759
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4766
+ CONSOLE LOG ENTRY: Finished SeqHandler Seq-UN-auto for 12 ms
4767
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4760
4768
  CONSOLE LOG ENTRY: Started SeqHandler: splitted category
4761
4769
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion category
4762
4770
  CONSOLE LOG ENTRY: Started SeqHandler: getHelm category
@@ -4807,12 +4815,13 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4807
4815
  "explicit": [],
4808
4816
  "duplicateMonomerPreferences": {}
4809
4817
  }
4810
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4818
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
4819
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4811
4820
  CONSOLE LOG ENTRY: Running tests
4812
4821
  CONSOLE LOG ENTRY: Started SeqHandler category
4813
4822
  CONSOLE LOG ENTRY: Started SeqHandler Seq-UN
4814
- CONSOLE LOG ENTRY: Finished SeqHandler Seq-UN for 8 ms
4815
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4823
+ CONSOLE LOG ENTRY: Finished SeqHandler Seq-UN for 9 ms
4824
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4816
4825
  CONSOLE LOG ENTRY: Started SeqHandler: splitted category
4817
4826
  CONSOLE LOG ENTRY: Started SeqHandler: getRegion category
4818
4827
  CONSOLE LOG ENTRY: Started SeqHandler: getHelm category
@@ -4863,37 +4872,37 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
4863
4872
  "explicit": [],
4864
4873
  "duplicateMonomerPreferences": {}
4865
4874
  }
4866
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4875
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4867
4876
  CONSOLE LOG ENTRY: Running tests
4868
4877
  CONSOLE LOG ENTRY: Started SeqHandler: splitted category
4869
4878
  CONSOLE LOG ENTRY: Started SeqHandler: splitted fastaMsa
4870
4879
  CONSOLE LOG ENTRY: Finished SeqHandler: splitted fastaMsa for 9 ms
4871
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4872
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4880
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4881
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4873
4882
  CONSOLE LOG ENTRY: Running tests
4874
4883
  CONSOLE LOG ENTRY: Started SeqHandler: splitted category
4875
4884
  CONSOLE LOG ENTRY: Started SeqHandler: splitted fasta
4876
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  CONSOLE LOG ENTRY: Finished SeqHandler: splitted fasta for 4 ms
4877
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4878
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4886
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4887
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4879
4888
  CONSOLE LOG ENTRY: Running tests
4880
4889
  CONSOLE LOG ENTRY: Started SeqHandler: splitted category
4881
4890
  CONSOLE LOG ENTRY: Started SeqHandler: splitted helm
4882
- CONSOLE LOG ENTRY: Finished SeqHandler: splitted helm for 6 ms
4883
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4884
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4891
+ CONSOLE LOG ENTRY: Finished SeqHandler: splitted helm for 7 ms
4892
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4893
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4885
4894
  CONSOLE LOG ENTRY: Running tests
4886
4895
  CONSOLE LOG ENTRY: Started SeqHandler: splitted category
4887
4896
  CONSOLE LOG ENTRY: Started SeqHandler: splitted separatorMsa
4888
- CONSOLE LOG ENTRY: Finished SeqHandler: splitted separatorMsa for 6 ms
4889
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4890
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4897
+ CONSOLE LOG ENTRY: Finished SeqHandler: splitted separatorMsa for 7 ms
4898
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4899
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4891
4900
  CONSOLE LOG ENTRY: Running tests
4892
4901
  CONSOLE LOG ENTRY: Started SeqHandler: splitted category
4893
4902
  CONSOLE LOG ENTRY: Started SeqHandler: splitted separator
4894
- CONSOLE LOG ENTRY: Finished SeqHandler: splitted separator for 9 ms
4895
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4896
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4903
+ CONSOLE LOG ENTRY: Finished SeqHandler: splitted separator for 10 ms
4904
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4905
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4897
4906
  CONSOLE LOG ENTRY: Running tests
4898
4907
  CONSOLE LOG ENTRY: Started sequenceSpace category
4899
4908
  CONSOLE LOG ENTRY: Started sequenceSpace sequenceSpaceOpens
@@ -4908,45 +4917,45 @@ CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status o
4908
4917
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/%7Brequire('./img/formula-lines-thumb.png').default%7D
4909
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  CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/scatter-plot-selection-thumb.png
4910
4919
  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
4920
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-regression-line.png
4911
4921
  CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/group-tooltip-thumb.png
4912
4922
  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
4913
- CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/scatter-plot-jitter-thumb.png
4914
- CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
4915
- CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-regression-line.png
4916
4923
  CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/scatter-plot-labels-thumb.png
4917
4924
  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
4925
+ CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/scatter-plot-jitter-thumb.png
4926
+ CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
4918
4927
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-lines.png
4919
4928
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/viewers/scatter-plot-molecules.png
4920
4929
  CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/webgpu-scatterplot-thumb.png
4921
4930
  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
4922
- CONSOLE LOG ENTRY: knn graph: 69.56201171875 ms
4923
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
4931
+ CONSOLE LOG ENTRY: knn graph: 81.427978515625 ms
4924
4932
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/concepts/table.md
4925
- CONSOLE LOG ENTRY: fit: 3222.802001953125 ms
4926
- CONSOLE LOG ENTRY: Finished sequenceSpace sequenceSpaceOpens for 3861 ms
4927
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4933
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
4934
+ CONSOLE LOG ENTRY: fit: 3075.849853515625 ms
4935
+ CONSOLE LOG ENTRY: Finished sequenceSpace sequenceSpaceOpens for 3771 ms
4936
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4928
4937
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/datagrok.md
4929
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4938
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4930
4939
  CONSOLE LOG ENTRY: Running tests
4931
4940
  CONSOLE LOG ENTRY: Started sequenceSpace category
4932
4941
  CONSOLE LOG ENTRY: Started sequenceSpace sequenceSpaceWithEmptyRows
4933
4942
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2F100_3_clustests_empty_vals.csv?&&flag=9
4934
4943
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/scatter-plot.md
4935
- CONSOLE LOG ENTRY: knn graph: 121.6279296875 ms
4944
+ CONSOLE LOG ENTRY: knn graph: 103.433837890625 ms
4945
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/%7Brequire('./img/formula-lines-thumb.png').default%7D
4936
4946
  CONSOLE LOG REQUEST: 404, http://localhost:8080/uploads/youtube/visualizations2.png
4937
4947
  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
4938
4948
  CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/scatter-plot-colors-sizes-markers-labels-thumb.png
4939
4949
  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
4940
- CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/%7Brequire('./img/formula-lines-thumb.png').default%7D
4941
4950
  CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/scatter-plot-zoom-and-pack-thumb.png
4942
4951
  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
4943
4952
  CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/scatter-plot-selection-thumb.png
4944
4953
  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
4945
- CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-regression-line.png
4946
4954
  CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/group-tooltip-thumb.png
4947
4955
  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
4948
4956
  CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/scatter-plot-labels-thumb.png
4949
4957
  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
4958
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-regression-line.png
4950
4959
  CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/scatter-plot-jitter-thumb.png
4951
4960
  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
4952
4961
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/scatter-plot-lines.png
@@ -4954,11 +4963,11 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/uploads/viewers/scatter-plo
4954
4963
  CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/img/webgpu-scatterplot-thumb.png
4955
4964
  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
4956
4965
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/concepts/table.md
4957
- CONSOLE LOG ENTRY: fit: 3122.25 ms
4958
- CONSOLE LOG ENTRY: Finished sequenceSpace sequenceSpaceWithEmptyRows for 3839 ms
4959
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4966
+ CONSOLE LOG ENTRY: fit: 3103.760986328125 ms
4967
+ CONSOLE LOG ENTRY: Finished sequenceSpace sequenceSpaceWithEmptyRows for 3988 ms
4968
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4960
4969
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/datagrok.md
4961
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4970
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4962
4971
  CONSOLE LOG ENTRY: Running tests
4963
4972
  CONSOLE LOG ENTRY: Started similarity/diversity category
4964
4973
  CONSOLE LOG ENTRY: Started similarity/diversity diversitySearchViewer
@@ -4969,9 +4978,9 @@ CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/sequence-
4969
4978
  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
4970
4979
  CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/sequence-diversity-search.mdx
4971
4980
  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
4972
- CONSOLE LOG ENTRY: Finished similarity/diversity diversitySearchViewer for 291 ms
4973
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4974
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4981
+ CONSOLE LOG ENTRY: Finished similarity/diversity diversitySearchViewer for 367 ms
4982
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4983
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4975
4984
  CONSOLE LOG ENTRY: Running tests
4976
4985
  CONSOLE LOG ENTRY: Started similarity/diversity category
4977
4986
  CONSOLE LOG ENTRY: Started similarity/diversity similaritySearchViewer
@@ -4980,11 +4989,11 @@ CONSOLE LOG ENTRY: js viewer initialized
4980
4989
  CONSOLE LOG ENTRY: js viewer initialized
4981
4990
  CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/sequence-similarity-search.md
4982
4991
  CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
4983
- CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
4984
4992
  CONSOLE LOG REQUEST: 404, http://localhost:8080/help/visualize/viewers/sequence-similarity-search.mdx
4985
- CONSOLE LOG ENTRY: Finished similarity/diversity similaritySearchViewer for 366 ms
4986
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4987
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
4993
+ CONSOLE LOG ENTRY: Failed to load resource: the server responded with a status of 404 (Not Found)
4994
+ CONSOLE LOG ENTRY: Finished similarity/diversity similaritySearchViewer for 512 ms
4995
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4996
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
4988
4997
  CONSOLE LOG ENTRY: Running tests
4989
4998
  CONSOLE LOG ENTRY: Started splitters category
4990
4999
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -5016,7 +5025,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
5016
5025
  CONSOLE LOG ENTRY: Started splitters fastaFromHelm
5017
5026
  CONSOLE LOG ENTRY: Bio: tests: splitters: src="[meI][Pip][dK][Thr_PO3H2][L-hArg(Et,Et)][D-Tyr_Et][Tyr_ab-dehydroMe][dV]EN[D-Orn][D-aThr][Phe_4Me]", res={"mList":["meI","Pip","dK","Thr_PO3H2","L-hArg(Et,Et)","D-Tyr_Et","Tyr_ab-dehydroMe","dV","E","N","D-Orn","D-aThr","Phe_4Me"],"gapOriginalMonomer":"-"} .
5018
5027
  CONSOLE LOG ENTRY: Finished splitters fastaFromHelm for 2 ms
5019
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5028
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5020
5029
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
5021
5030
  {
5022
5031
  "exclude": [],
@@ -5038,7 +5047,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5038
5047
  "explicit": [],
5039
5048
  "duplicateMonomerPreferences": {}
5040
5049
  }
5041
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5050
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5042
5051
  CONSOLE LOG ENTRY: Running tests
5043
5052
  CONSOLE LOG ENTRY: Started splitters category
5044
5053
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -5070,7 +5079,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
5070
5079
  CONSOLE LOG ENTRY: Started splitters fastaMulti
5071
5080
  CONSOLE LOG ENTRY: Bio: tests: splitters: src="M[MeI]YKETLL[MeF]PKTDFPMRGGL[MeA]", res={"mList":["M","MeI","Y","K","E","T","L","L","MeF","P","K","T","D","F","P","M","R","G","G","L","MeA"],"gapOriginalMonomer":"-"} .
5072
5081
  CONSOLE LOG ENTRY: Finished splitters fastaMulti for 0 ms
5073
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5082
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5074
5083
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
5075
5084
  {
5076
5085
  "exclude": [],
@@ -5092,7 +5101,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5092
5101
  "explicit": [],
5093
5102
  "duplicateMonomerPreferences": {}
5094
5103
  }
5095
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5104
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5096
5105
  CONSOLE LOG ENTRY: Running tests
5097
5106
  CONSOLE LOG ENTRY: Started splitters category
5098
5107
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -5122,8 +5131,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5122
5131
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
5123
5132
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
5124
5133
  CONSOLE LOG ENTRY: Started splitters getHelmMonomers
5125
- CONSOLE LOG ENTRY: Finished splitters getHelmMonomers for 8 ms
5126
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5134
+ CONSOLE LOG ENTRY: Finished splitters getHelmMonomers for 11 ms
5135
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5127
5136
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
5128
5137
  {
5129
5138
  "exclude": [],
@@ -5145,7 +5154,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5145
5154
  "explicit": [],
5146
5155
  "duplicateMonomerPreferences": {}
5147
5156
  }
5148
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5157
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5149
5158
  CONSOLE LOG ENTRY: Running tests
5150
5159
  CONSOLE LOG ENTRY: Started splitters category
5151
5160
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -5177,7 +5186,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
5177
5186
  CONSOLE LOG ENTRY: Started splitters helm1
5178
5187
  CONSOLE LOG ENTRY: Bio: tests: splitters: src="PEPTIDE1{meI.hHis.Aca.N.T.dE.Thr_PO3H2.Aca.D-Tyr_Et.Tyr_ab-dehydroMe.dV.E.N.D-Orn.D-aThr.Phe_4Me}$$$", res={"mList":["meI","hHis","Aca","N","T","dE","Thr_PO3H2","Aca","D-Tyr_Et","Tyr_ab-dehydroMe","dV","E","N","D-Orn","D-aThr","Phe_4Me"],"gapOriginalMonomer":"*"} .
5179
5188
  CONSOLE LOG ENTRY: Finished splitters helm1 for 1 ms
5180
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5189
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5181
5190
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
5182
5191
  {
5183
5192
  "exclude": [],
@@ -5199,7 +5208,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5199
5208
  "explicit": [],
5200
5209
  "duplicateMonomerPreferences": {}
5201
5210
  }
5202
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5211
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5203
5212
  CONSOLE LOG ENTRY: Running tests
5204
5213
  CONSOLE LOG ENTRY: Started splitters category
5205
5214
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -5231,7 +5240,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
5231
5240
  CONSOLE LOG ENTRY: Started splitters helm2
5232
5241
  CONSOLE LOG ENTRY: Bio: tests: splitters: src="PEPTIDE1{meI.hHis.Aca.N.T.dK.Thr_PO3H2.Aca.D-Tyr_Et.D-Dap.dV.E.N.pnG.Phe_4Me}$$$", res={"mList":["meI","hHis","Aca","N","T","dK","Thr_PO3H2","Aca","D-Tyr_Et","D-Dap","dV","E","N","pnG","Phe_4Me"],"gapOriginalMonomer":"*"} .
5233
5242
  CONSOLE LOG ENTRY: Finished splitters helm2 for 1 ms
5234
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5243
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5235
5244
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
5236
5245
  {
5237
5246
  "exclude": [],
@@ -5253,7 +5262,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5253
5262
  "explicit": [],
5254
5263
  "duplicateMonomerPreferences": {}
5255
5264
  }
5256
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5265
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5257
5266
  CONSOLE LOG ENTRY: Running tests
5258
5267
  CONSOLE LOG ENTRY: Started splitters category
5259
5268
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -5285,7 +5294,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
5285
5294
  CONSOLE LOG ENTRY: Started splitters helm3-multichar
5286
5295
  CONSOLE LOG ENTRY: Bio: tests: splitters: src="PEPTIDE1{[meI].[hHis].[Aca].N.T.[dK].[Thr_PO3H2].[Aca].[D-Tyr_Et].[D-Dap].[dV].E.N.[pnG].[Phe_4Me]}$$$", res={"mList":["meI","hHis","Aca","N","T","dK","Thr_PO3H2","Aca","D-Tyr_Et","D-Dap","dV","E","N","pnG","Phe_4Me"],"gapOriginalMonomer":"*"} .
5287
5296
  CONSOLE LOG ENTRY: Finished splitters helm3-multichar for 1 ms
5288
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5297
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5289
5298
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
5290
5299
  {
5291
5300
  "exclude": [],
@@ -5307,7 +5316,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5307
5316
  "explicit": [],
5308
5317
  "duplicateMonomerPreferences": {}
5309
5318
  }
5310
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5319
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5311
5320
  CONSOLE LOG ENTRY: Running tests
5312
5321
  CONSOLE LOG ENTRY: Started splitters category
5313
5322
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -5338,8 +5347,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
5338
5347
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
5339
5348
  CONSOLE LOG ENTRY: Started splitters splitToMonomers
5340
5349
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fsamples%2FMSA.csv?&&flag=9
5341
- CONSOLE LOG ENTRY: Finished splitters splitToMonomers for 296 ms
5342
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5350
+ CONSOLE LOG ENTRY: Finished splitters splitToMonomers for 673 ms
5351
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5343
5352
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
5344
5353
  {
5345
5354
  "exclude": [],
@@ -5361,8 +5370,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5361
5370
  "explicit": [],
5362
5371
  "duplicateMonomerPreferences": {}
5363
5372
  }
5364
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
5365
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5373
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5366
5374
  CONSOLE LOG ENTRY: Running tests
5367
5375
  CONSOLE LOG ENTRY: Started splitters category
5368
5376
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -5394,7 +5402,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
5394
5402
  CONSOLE LOG ENTRY: Started splitters testHelm1
5395
5403
  CONSOLE LOG ENTRY: Bio: tests: splitters: src="RNA1{R(U)P.R(T)P.R(G)P.R(C)P.R(A)}$$$$", res={"mList":["R(U)P","R(T)P","R(G)P","R(C)P","R(A)"],"gapOriginalMonomer":"*"} .
5396
5404
  CONSOLE LOG ENTRY: Finished splitters testHelm1 for 1 ms
5397
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5405
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5398
5406
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
5399
5407
  {
5400
5408
  "exclude": [],
@@ -5416,7 +5424,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5416
5424
  "explicit": [],
5417
5425
  "duplicateMonomerPreferences": {}
5418
5426
  }
5419
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5427
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
5428
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5420
5429
  CONSOLE LOG ENTRY: Running tests
5421
5430
  CONSOLE LOG ENTRY: Started splitters category
5422
5431
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -5448,7 +5457,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
5448
5457
  CONSOLE LOG ENTRY: Started splitters testHelm2
5449
5458
  CONSOLE LOG ENTRY: Bio: tests: splitters: src="RNA1{P.R(U)P.R(T)}$$$$", res={"mList":["P","R(U)P","R(T)"],"gapOriginalMonomer":"*"} .
5450
5459
  CONSOLE LOG ENTRY: Finished splitters testHelm2 for 1 ms
5451
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5460
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5452
5461
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
5453
5462
  {
5454
5463
  "exclude": [],
@@ -5470,7 +5479,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5470
5479
  "explicit": [],
5471
5480
  "duplicateMonomerPreferences": {}
5472
5481
  }
5473
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5482
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5474
5483
  CONSOLE LOG ENTRY: Running tests
5475
5484
  CONSOLE LOG ENTRY: Started splitters category
5476
5485
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -5502,7 +5511,7 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
5502
5511
  CONSOLE LOG ENTRY: Started splitters testHelm3
5503
5512
  CONSOLE LOG ENTRY: Bio: tests: splitters: src="RNA1{P.R(U).P.R(T)}$$$$", res={"mList":["P","R(U)","P","R(T)"],"gapOriginalMonomer":"*"} .
5504
5513
  CONSOLE LOG ENTRY: Finished splitters testHelm3 for 1 ms
5505
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5514
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5506
5515
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
5507
5516
  {
5508
5517
  "exclude": [],
@@ -5524,7 +5533,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5524
5533
  "explicit": [],
5525
5534
  "duplicateMonomerPreferences": {}
5526
5535
  }
5527
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5536
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5528
5537
  CONSOLE LOG ENTRY: Running tests
5529
5538
  CONSOLE LOG ENTRY: Started toAtomicLevel-ui category
5530
5539
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -5554,8 +5563,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5554
5563
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
5555
5564
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
5556
5565
  CONSOLE LOG ENTRY: Started toAtomicLevel-ui fasta-linear
5557
- CONSOLE LOG ENTRY: Finished toAtomicLevel-ui fasta-linear for 63 ms
5558
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5566
+ CONSOLE LOG ENTRY: Finished toAtomicLevel-ui fasta-linear for 60 ms
5567
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5559
5568
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
5560
5569
  {
5561
5570
  "exclude": [],
@@ -5577,7 +5586,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5577
5586
  "explicit": [],
5578
5587
  "duplicateMonomerPreferences": {}
5579
5588
  }
5580
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5589
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5581
5590
  CONSOLE LOG ENTRY: Running tests
5582
5591
  CONSOLE LOG ENTRY: Started toAtomicLevel-ui category
5583
5592
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -5607,8 +5616,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5607
5616
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
5608
5617
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
5609
5618
  CONSOLE LOG ENTRY: Started toAtomicLevel-ui fasta-with-gap-linear
5610
- CONSOLE LOG ENTRY: Finished toAtomicLevel-ui fasta-with-gap-linear for 38 ms
5611
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5619
+ CONSOLE LOG ENTRY: Finished toAtomicLevel-ui fasta-with-gap-linear for 31 ms
5620
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5612
5621
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
5613
5622
  {
5614
5623
  "exclude": [],
@@ -5630,7 +5639,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5630
5639
  "explicit": [],
5631
5640
  "duplicateMonomerPreferences": {}
5632
5641
  }
5633
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5642
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5634
5643
  CONSOLE LOG ENTRY: Running tests
5635
5644
  CONSOLE LOG ENTRY: Started toAtomicLevel-ui category
5636
5645
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -5660,8 +5669,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5660
5669
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
5661
5670
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
5662
5671
  CONSOLE LOG ENTRY: Started toAtomicLevel-ui helm-linear
5663
- CONSOLE LOG ENTRY: Finished toAtomicLevel-ui helm-linear for 28 ms
5664
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5672
+ CONSOLE LOG ENTRY: Finished toAtomicLevel-ui helm-linear for 39 ms
5673
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5665
5674
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
5666
5675
  {
5667
5676
  "exclude": [],
@@ -5683,7 +5692,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5683
5692
  "explicit": [],
5684
5693
  "duplicateMonomerPreferences": {}
5685
5694
  }
5686
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5695
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5687
5696
  CONSOLE LOG ENTRY: Running tests
5688
5697
  CONSOLE LOG ENTRY: Started toAtomicLevel-ui category
5689
5698
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -5713,8 +5722,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5713
5722
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
5714
5723
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
5715
5724
  CONSOLE LOG ENTRY: Started toAtomicLevel-ui helm-with-gap-linear
5716
- CONSOLE LOG ENTRY: Finished toAtomicLevel-ui helm-with-gap-linear for 34 ms
5717
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5725
+ CONSOLE LOG ENTRY: Finished toAtomicLevel-ui helm-with-gap-linear for 37 ms
5726
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5718
5727
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
5719
5728
  {
5720
5729
  "exclude": [],
@@ -5736,7 +5745,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5736
5745
  "explicit": [],
5737
5746
  "duplicateMonomerPreferences": {}
5738
5747
  }
5739
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5748
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5740
5749
  CONSOLE LOG ENTRY: Running tests
5741
5750
  CONSOLE LOG ENTRY: Started toAtomicLevel category
5742
5751
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -5774,8 +5783,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
5774
5783
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-input.csv?&&flag=9
5775
5784
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-output.csv?&&flag=9
5776
5785
  CONSOLE LOG ENTRY: Started toAtomicLevel dna-fasta
5777
- CONSOLE LOG ENTRY: Finished toAtomicLevel dna-fasta for 118 ms
5778
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5786
+ CONSOLE LOG ENTRY: Finished toAtomicLevel dna-fasta for 78 ms
5787
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5779
5788
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
5780
5789
  {
5781
5790
  "exclude": [],
@@ -5846,7 +5855,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5846
5855
  "duplicateMonomerPreferences": {}
5847
5856
  }
5848
5857
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
5849
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5858
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5850
5859
  CONSOLE LOG ENTRY: Running tests
5851
5860
  CONSOLE LOG ENTRY: Started toAtomicLevel category
5852
5861
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -5884,8 +5893,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
5884
5893
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-input.csv?&&flag=9
5885
5894
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-output.csv?&&flag=9
5886
5895
  CONSOLE LOG ENTRY: Started toAtomicLevel fastaDna
5887
- CONSOLE LOG ENTRY: Finished toAtomicLevel fastaDna for 62 ms
5888
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5896
+ CONSOLE LOG ENTRY: Finished toAtomicLevel fastaDna for 35 ms
5897
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5889
5898
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
5890
5899
  {
5891
5900
  "exclude": [],
@@ -5955,7 +5964,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
5955
5964
  "explicit": [],
5956
5965
  "duplicateMonomerPreferences": {}
5957
5966
  }
5958
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
5967
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5959
5968
  CONSOLE LOG ENTRY: Running tests
5960
5969
  CONSOLE LOG ENTRY: Started toAtomicLevel category
5961
5970
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -5993,8 +6002,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
5993
6002
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-input.csv?&&flag=9
5994
6003
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-output.csv?&&flag=9
5995
6004
  CONSOLE LOG ENTRY: Started toAtomicLevel fastaPt
5996
- CONSOLE LOG ENTRY: Finished toAtomicLevel fastaPt for 37 ms
5997
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6005
+ CONSOLE LOG ENTRY: Finished toAtomicLevel fastaPt for 30 ms
6006
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
5998
6007
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
5999
6008
  {
6000
6009
  "exclude": [],
@@ -6007,9 +6016,9 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
6007
6016
  "explicit": [],
6008
6017
  "duplicateMonomerPreferences": {}
6009
6018
  }
6010
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
6011
6019
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
6012
6020
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fsample-lib-Aca-colored.json?&&flag=10
6021
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
6013
6022
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
6014
6023
  {
6015
6024
  "exclude": [],
@@ -6064,7 +6073,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
6064
6073
  "explicit": [],
6065
6074
  "duplicateMonomerPreferences": {}
6066
6075
  }
6067
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6076
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6068
6077
  CONSOLE LOG ENTRY: Running tests
6069
6078
  CONSOLE LOG ENTRY: Started toAtomicLevel category
6070
6079
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -6102,8 +6111,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
6102
6111
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-input.csv?&&flag=9
6103
6112
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-output.csv?&&flag=9
6104
6113
  CONSOLE LOG ENTRY: Started toAtomicLevel fastaRna
6105
- CONSOLE LOG ENTRY: Finished toAtomicLevel fastaRna for 42 ms
6106
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6114
+ CONSOLE LOG ENTRY: Finished toAtomicLevel fastaRna for 24 ms
6115
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6107
6116
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
6108
6117
  {
6109
6118
  "exclude": [],
@@ -6173,7 +6182,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
6173
6182
  "explicit": [],
6174
6183
  "duplicateMonomerPreferences": {}
6175
6184
  }
6176
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6185
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6177
6186
  CONSOLE LOG ENTRY: Running tests
6178
6187
  CONSOLE LOG ENTRY: Started toAtomicLevel category
6179
6188
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -6211,8 +6220,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
6211
6220
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-input.csv?&&flag=9
6212
6221
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-output.csv?&&flag=9
6213
6222
  CONSOLE LOG ENTRY: Started toAtomicLevel fastaUn
6214
- CONSOLE LOG ENTRY: Finished toAtomicLevel fastaUn for 28 ms
6215
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6223
+ CONSOLE LOG ENTRY: Finished toAtomicLevel fastaUn for 146 ms
6224
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6216
6225
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
6217
6226
  {
6218
6227
  "exclude": [],
@@ -6282,7 +6291,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
6282
6291
  "explicit": [],
6283
6292
  "duplicateMonomerPreferences": {}
6284
6293
  }
6285
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6294
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6286
6295
  CONSOLE LOG ENTRY: Running tests
6287
6296
  CONSOLE LOG ENTRY: Started toAtomicLevel category
6288
6297
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -6320,8 +6329,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
6320
6329
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-input.csv?&&flag=9
6321
6330
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-output.csv?&&flag=9
6322
6331
  CONSOLE LOG ENTRY: Started toAtomicLevel helm
6323
- CONSOLE LOG ENTRY: Finished toAtomicLevel helm for 53 ms
6324
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6332
+ CONSOLE LOG ENTRY: Finished toAtomicLevel helm for 48 ms
6333
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6325
6334
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
6326
6335
  {
6327
6336
  "exclude": [],
@@ -6391,7 +6400,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
6391
6400
  "explicit": [],
6392
6401
  "duplicateMonomerPreferences": {}
6393
6402
  }
6394
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6403
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6395
6404
  CONSOLE LOG ENTRY: Running tests
6396
6405
  CONSOLE LOG ENTRY: Started toAtomicLevel category
6397
6406
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -6429,8 +6438,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
6429
6438
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-input.csv?&&flag=9
6430
6439
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-output.csv?&&flag=9
6431
6440
  CONSOLE LOG ENTRY: Started toAtomicLevel msa-fasta
6432
- CONSOLE LOG ENTRY: Finished toAtomicLevel msa-fasta for 56 ms
6433
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6441
+ CONSOLE LOG ENTRY: Finished toAtomicLevel msa-fasta for 47 ms
6442
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6434
6443
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
6435
6444
  {
6436
6445
  "exclude": [],
@@ -6443,9 +6452,9 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
6443
6452
  "explicit": [],
6444
6453
  "duplicateMonomerPreferences": {}
6445
6454
  }
6455
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
6446
6456
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
6447
6457
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fsample-lib-Aca-colored.json?&&flag=10
6448
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
6449
6458
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
6450
6459
  {
6451
6460
  "exclude": [],
@@ -6500,8 +6509,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
6500
6509
  "explicit": [],
6501
6510
  "duplicateMonomerPreferences": {}
6502
6511
  }
6503
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
6504
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6512
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6505
6513
  CONSOLE LOG ENTRY: Running tests
6506
6514
  CONSOLE LOG ENTRY: Started toAtomicLevel category
6507
6515
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -6539,8 +6547,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
6539
6547
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-input.csv?&&flag=9
6540
6548
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-output.csv?&&flag=9
6541
6549
  CONSOLE LOG ENTRY: Started toAtomicLevel msa-separator
6542
- CONSOLE LOG ENTRY: Finished toAtomicLevel msa-separator for 50 ms
6543
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6550
+ CONSOLE LOG ENTRY: Finished toAtomicLevel msa-separator for 55 ms
6551
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6544
6552
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
6545
6553
  {
6546
6554
  "exclude": [],
@@ -6610,7 +6618,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
6610
6618
  "explicit": [],
6611
6619
  "duplicateMonomerPreferences": {}
6612
6620
  }
6613
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6621
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
6622
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6614
6623
  CONSOLE LOG ENTRY: Running tests
6615
6624
  CONSOLE LOG ENTRY: Started toAtomicLevel category
6616
6625
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -6648,8 +6657,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
6648
6657
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-input.csv?&&flag=9
6649
6658
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-output.csv?&&flag=9
6650
6659
  CONSOLE LOG ENTRY: Started toAtomicLevel peptides-fasta
6651
- CONSOLE LOG ENTRY: Finished toAtomicLevel peptides-fasta for 273 ms
6652
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6660
+ CONSOLE LOG ENTRY: Finished toAtomicLevel peptides-fasta for 167 ms
6661
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6653
6662
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
6654
6663
  {
6655
6664
  "exclude": [],
@@ -6719,7 +6728,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
6719
6728
  "explicit": [],
6720
6729
  "duplicateMonomerPreferences": {}
6721
6730
  }
6722
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6731
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6723
6732
  CONSOLE LOG ENTRY: Running tests
6724
6733
  CONSOLE LOG ENTRY: Started toAtomicLevel category
6725
6734
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -6758,8 +6767,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
6758
6767
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-output.csv?&&flag=9
6759
6768
  CONSOLE LOG ENTRY: Started toAtomicLevel ptFasta2
6760
6769
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-pt-fasta-2.mol?&&flag=9
6761
- CONSOLE LOG ENTRY: Finished toAtomicLevel ptFasta2 for 70 ms
6762
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6770
+ CONSOLE LOG ENTRY: Finished toAtomicLevel ptFasta2 for 78 ms
6771
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6763
6772
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
6764
6773
  {
6765
6774
  "exclude": [],
@@ -6829,7 +6838,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
6829
6838
  "explicit": [],
6830
6839
  "duplicateMonomerPreferences": {}
6831
6840
  }
6832
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6841
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6833
6842
  CONSOLE LOG ENTRY: Running tests
6834
6843
  CONSOLE LOG ENTRY: Started toAtomicLevel category
6835
6844
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -6867,11 +6876,11 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
6867
6876
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-input.csv?&&flag=9
6868
6877
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-output.csv?&&flag=9
6869
6878
  CONSOLE LOG ENTRY: Started toAtomicLevel separatorDna
6870
- CONSOLE LOG ENTRY: Finished toAtomicLevel separatorDna for 22 ms
6871
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6879
+ CONSOLE LOG ENTRY: Finished toAtomicLevel separatorDna for 49 ms
6880
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6872
6881
  CONSOLE LOG ENTRY: Started toAtomicLevel separatorDna
6873
- CONSOLE LOG ENTRY: Finished toAtomicLevel separatorDna for 39 ms
6874
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6882
+ CONSOLE LOG ENTRY: Finished toAtomicLevel separatorDna for 49 ms
6883
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6875
6884
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
6876
6885
  {
6877
6886
  "exclude": [],
@@ -6941,7 +6950,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
6941
6950
  "explicit": [],
6942
6951
  "duplicateMonomerPreferences": {}
6943
6952
  }
6944
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6953
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6945
6954
  CONSOLE LOG ENTRY: Running tests
6946
6955
  CONSOLE LOG ENTRY: Started toAtomicLevel category
6947
6956
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -6979,11 +6988,11 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
6979
6988
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-input.csv?&&flag=9
6980
6989
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-output.csv?&&flag=9
6981
6990
  CONSOLE LOG ENTRY: Started toAtomicLevel separatorDna
6982
- CONSOLE LOG ENTRY: Finished toAtomicLevel separatorDna for 46 ms
6991
+ CONSOLE LOG ENTRY: Finished toAtomicLevel separatorDna for 39 ms
6992
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6983
6993
  CONSOLE LOG ENTRY: Started toAtomicLevel separatorDna
6984
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6985
- CONSOLE LOG ENTRY: Finished toAtomicLevel separatorDna for 30 ms
6986
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
6994
+ CONSOLE LOG ENTRY: Finished toAtomicLevel separatorDna for 98 ms
6995
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
6987
6996
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
6988
6997
  {
6989
6998
  "exclude": [],
@@ -7053,7 +7062,7 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
7053
7062
  "explicit": [],
7054
7063
  "duplicateMonomerPreferences": {}
7055
7064
  }
7056
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7065
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7057
7066
  CONSOLE LOG ENTRY: Running tests
7058
7067
  CONSOLE LOG ENTRY: Started toAtomicLevel category
7059
7068
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -7091,8 +7100,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
7091
7100
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-input.csv?&&flag=9
7092
7101
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-output.csv?&&flag=9
7093
7102
  CONSOLE LOG ENTRY: Started toAtomicLevel separatorPt
7094
- CONSOLE LOG ENTRY: Finished toAtomicLevel separatorPt for 54 ms
7095
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7103
+ CONSOLE LOG ENTRY: Finished toAtomicLevel separatorPt for 89 ms
7104
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7096
7105
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
7097
7106
  {
7098
7107
  "exclude": [],
@@ -7162,7 +7171,8 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
7162
7171
  "explicit": [],
7163
7172
  "duplicateMonomerPreferences": {}
7164
7173
  }
7165
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7174
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
7175
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7166
7176
  CONSOLE LOG ENTRY: Running tests
7167
7177
  CONSOLE LOG ENTRY: Started toAtomicLevel category
7168
7178
  CONSOLE LOG ENTRY: Bio: getUserLibSettings()
@@ -7189,7 +7199,6 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
7189
7199
  "exclude": [],
7190
7200
  "duplicateMonomerPreferences": {}
7191
7201
  }
7192
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
7193
7202
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2FHELMCoreLibrary.json?&&flag=10
7194
7203
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Fmonomer-libraries%2F%2Fpolytool-lib.json?&&flag=10
7195
7204
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-peptides-fasta-input.csv?&&flag=9
@@ -7201,8 +7210,8 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/Syste
7201
7210
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-input.csv?&&flag=9
7202
7211
  CONSOLE LOG REQUEST: 200, http://localhost:8080/api/connectors/connections/System.AppData/file/Bio%2Ftests%2Fto-atomic-level-msa-fasta-output.csv?&&flag=9
7203
7212
  CONSOLE LOG ENTRY: Started toAtomicLevel separatorUn
7204
- CONSOLE LOG ENTRY: Finished toAtomicLevel separatorUn for 31 ms
7205
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7213
+ CONSOLE LOG ENTRY: Finished toAtomicLevel separatorUn for 126 ms
7214
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7206
7215
  CONSOLE LOG ENTRY: Bio: setUserLibSettings()
7207
7216
  {
7208
7217
  "exclude": [],
@@ -7272,23 +7281,23 @@ CONSOLE LOG ENTRY: Bio: getUserLibSettings()
7272
7281
  "explicit": [],
7273
7282
  "duplicateMonomerPreferences": {}
7274
7283
  }
7275
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7284
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7276
7285
  CONSOLE LOG ENTRY: Running tests
7277
7286
  CONSOLE LOG ENTRY: Started viewers category
7278
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7279
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7287
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7288
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7280
7289
  CONSOLE LOG ENTRY: Running tests
7281
7290
  CONSOLE LOG ENTRY: Started viewers category
7282
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7283
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7291
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7292
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7284
7293
  CONSOLE LOG ENTRY: Running tests
7285
7294
  CONSOLE LOG ENTRY: Started viewers category
7286
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7287
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7295
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7296
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7288
7297
  CONSOLE LOG ENTRY: Running tests
7289
7298
  CONSOLE LOG ENTRY: Started viewers category
7290
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7291
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7299
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7300
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7292
7301
  CONSOLE LOG ENTRY: Running tests
7293
7302
  CONSOLE LOG ENTRY: Started WebLogo.layout category
7294
7303
  CONSOLE LOG ENTRY: Started WebLogo.layout fasta
@@ -7300,88 +7309,88 @@ CONSOLE LOG REQUEST: 200, http://localhost:8080/help/visualize/viewers/img/web-l
7300
7309
  CONSOLE LOG ENTRY: js viewer initialized
7301
7310
  CONSOLE LOG ENTRY: js viewer initialized
7302
7311
  CONSOLE LOG ENTRY: js viewer initialized
7303
- CONSOLE LOG ENTRY: Finished WebLogo.layout fasta for 265 ms
7304
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7312
+ CONSOLE LOG ENTRY: Finished WebLogo.layout fasta for 247 ms
7313
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7305
7314
  CONSOLE LOG REQUEST: 200, http://localhost:8080/help/datagrok/datagrok.md
7306
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7315
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7307
7316
  CONSOLE LOG ENTRY: Running tests
7308
7317
  CONSOLE LOG ENTRY: Started WebLogo.monomerToShort category
7309
7318
  CONSOLE LOG ENTRY: Started WebLogo.monomerToShort longMonomerComplexFirstPartLong56
7310
7319
  CONSOLE LOG ENTRY: Finished WebLogo.monomerToShort longMonomerComplexFirstPartLong56 for 1 ms
7311
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7312
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7320
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7321
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7313
7322
  CONSOLE LOG ENTRY: Running tests
7314
7323
  CONSOLE LOG ENTRY: Started WebLogo.monomerToShort category
7315
7324
  CONSOLE LOG ENTRY: Started WebLogo.monomerToShort longMonomerComplexFirstPartShort
7316
7325
  CONSOLE LOG ENTRY: Finished WebLogo.monomerToShort longMonomerComplexFirstPartShort for 1 ms
7317
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7318
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7326
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7327
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7319
7328
  CONSOLE LOG ENTRY: Running tests
7320
7329
  CONSOLE LOG ENTRY: Started WebLogo.monomerToShort category
7321
7330
  CONSOLE LOG ENTRY: Started WebLogo.monomerToShort longMonomerLong56
7322
7331
  CONSOLE LOG ENTRY: Finished WebLogo.monomerToShort longMonomerLong56 for 0 ms
7323
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7324
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7332
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7333
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
7334
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7325
7335
  CONSOLE LOG ENTRY: Running tests
7326
7336
  CONSOLE LOG ENTRY: Started WebLogo.monomerToShort category
7327
7337
  CONSOLE LOG ENTRY: Started WebLogo.monomerToShort longMonomerShort
7328
7338
  CONSOLE LOG ENTRY: Finished WebLogo.monomerToShort longMonomerShort for 1 ms
7329
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7330
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/user_settings_storage/Libraries?currentUser=true
7331
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7339
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7340
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7332
7341
  CONSOLE LOG ENTRY: Running tests
7333
7342
  CONSOLE LOG ENTRY: Started WebLogo.monomerToShort category
7334
7343
  CONSOLE LOG ENTRY: Started WebLogo.monomerToShort longMonomerSingle
7335
7344
  CONSOLE LOG ENTRY: Finished WebLogo.monomerToShort longMonomerSingle for 0 ms
7336
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7337
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7345
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7346
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7338
7347
  CONSOLE LOG ENTRY: Running tests
7339
7348
  CONSOLE LOG ENTRY: Started WebLogo.monomerToShort category
7340
7349
  CONSOLE LOG ENTRY: Started WebLogo.monomerToShort monomerToShort
7341
- CONSOLE LOG ENTRY: Finished WebLogo.monomerToShort monomerToShort for 0 ms
7342
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7343
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7350
+ CONSOLE LOG ENTRY: Finished WebLogo.monomerToShort monomerToShort for 1 ms
7351
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7352
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7344
7353
  CONSOLE LOG ENTRY: Running tests
7345
7354
  CONSOLE LOG ENTRY: Started WebLogo.positions category
7346
7355
  CONSOLE LOG ENTRY: Started WebLogo.positions allPositions
7347
7356
  CONSOLE LOG ENTRY: js viewer initialized
7348
7357
  CONSOLE LOG ENTRY: js viewer initialized
7349
- CONSOLE LOG ENTRY: Finished WebLogo.positions allPositions for 119 ms
7350
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7351
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7358
+ CONSOLE LOG ENTRY: Finished WebLogo.positions allPositions for 112 ms
7359
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7360
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7352
7361
  CONSOLE LOG ENTRY: Running tests
7353
7362
  CONSOLE LOG ENTRY: Started WebLogo.positions category
7354
7363
  CONSOLE LOG ENTRY: Started WebLogo.positions count sequences for monomer at position
7355
7364
  CONSOLE LOG ENTRY: js viewer initialized
7356
7365
  CONSOLE LOG ENTRY: js viewer initialized
7357
- CONSOLE LOG ENTRY: Finished WebLogo.positions count sequences for monomer at position for 114 ms
7358
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7359
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7366
+ CONSOLE LOG ENTRY: Finished WebLogo.positions count sequences for monomer at position for 120 ms
7367
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7368
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7360
7369
  CONSOLE LOG ENTRY: Running tests
7361
7370
  CONSOLE LOG ENTRY: Started WebLogo.positions category
7362
7371
  CONSOLE LOG ENTRY: Started WebLogo.positions empty
7363
7372
  CONSOLE LOG ENTRY: js viewer initialized
7364
7373
  CONSOLE LOG ENTRY: js viewer initialized
7365
- CONSOLE LOG ENTRY: Finished WebLogo.positions empty for 117 ms
7366
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7367
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7374
+ CONSOLE LOG ENTRY: Finished WebLogo.positions empty for 103 ms
7375
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7376
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7368
7377
  CONSOLE LOG ENTRY: Running tests
7369
7378
  CONSOLE LOG ENTRY: Started WebLogo.positions category
7370
7379
  CONSOLE LOG ENTRY: Started WebLogo.positions positions with shrinkEmptyTail option true (filtered)
7371
7380
  CONSOLE LOG ENTRY: js viewer initialized
7372
7381
  CONSOLE LOG ENTRY: js viewer initialized
7373
- CONSOLE LOG ENTRY: Finished WebLogo.positions positions with shrinkEmptyTail option true (filtered) for 105 ms
7374
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7375
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7382
+ CONSOLE LOG ENTRY: Finished WebLogo.positions positions with shrinkEmptyTail option true (filtered) for 120 ms
7383
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7384
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7376
7385
  CONSOLE LOG ENTRY: Running tests
7377
7386
  CONSOLE LOG ENTRY: Started WebLogo.positions category
7378
7387
  CONSOLE LOG ENTRY: Started WebLogo.positions positions with skipEmptyPositions option
7379
7388
  CONSOLE LOG ENTRY: js viewer initialized
7380
7389
  CONSOLE LOG ENTRY: js viewer initialized
7381
- CONSOLE LOG ENTRY: Finished WebLogo.positions positions with skipEmptyPositions option for 107 ms
7382
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7383
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7390
+ CONSOLE LOG ENTRY: Finished WebLogo.positions positions with skipEmptyPositions option for 138 ms
7391
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7392
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7384
7393
  CONSOLE LOG ENTRY: Running tests
7385
7394
  CONSOLE LOG ENTRY: Started WebLogo.project category
7386
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7387
- CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false
7395
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false
7396
+ CONSOLE LOG REQUEST: 200, http://localhost:8080/api/log/tests/package?benchmark=false&ciCd=false