@datagrok/bio 2.16.6 → 2.16.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +6 -0
- package/dist/package-test.js +2 -2
- package/dist/package-test.js.map +1 -1
- package/dist/package.js +2 -2
- package/dist/package.js.map +1 -1
- package/package.json +2 -2
- package/src/package.ts +0 -1
- package/src/tests/seq-handler-splitted-tests.ts +3 -1
- package/src/utils/monomer-lib/library-file-manager/ui.ts +1 -1
- package/src/utils/monomer-lib/monomer-manager/monomer-manager.ts +1 -0
package/package.json
CHANGED
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@@ -5,7 +5,7 @@
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"name": "Aleksandr Tanas",
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"email": "atanas@datagrok.ai"
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},
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-
"version": "2.16.
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8
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+
"version": "2.16.7",
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"description": "Bioinformatics support (import/export of sequences, conversion, visualization, analysis). [See more](https://github.com/datagrok-ai/public/blob/master/packages/Bio/README.md) for details.",
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"repository": {
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"type": "git",
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@@ -37,7 +37,7 @@
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],
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"dependencies": {
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"@biowasm/aioli": "^3.1.0",
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-
"@datagrok-libraries/bio": "^5.45.
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+
"@datagrok-libraries/bio": "^5.45.5",
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"@datagrok-libraries/chem-meta": "^1.2.7",
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"@datagrok-libraries/math": "^1.2.2",
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"@datagrok-libraries/ml": "^6.7.4",
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package/src/package.ts
CHANGED
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@@ -1139,7 +1139,6 @@ export async function sdfToJsonLib(table: DG.DataFrame) {
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//input: string seq { semType: Macromolecule }
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//input: bool nonlinear
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//output: string molfile { semType: Molecule }
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-
//meta.role: converter
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export async function seq2atomic(seq: string, nonlinear: boolean): Promise<string | undefined> {
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if (!(seq.trim())) return '';
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try {
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@@ -114,7 +114,8 @@ rut2-rty-her2---wert-rut12-rty-her2---wert
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PEPTIDE1{meI.hHis.Aca.N.T.dE.Thr_PO3H2.Aca.D-Tyr_Et.Thr_PO3H2.Aca.D-Tyr_Et}$$$$
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PEPTIDE1{meI.hHis.Aca.Cys_SEt.T.dK.Thr_PO3H2.Aca.dK.Thr_PO3H2.Aca}$$$$
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PEPTIDE1{Lys_Boc.hHis.Aca.Cys_SEt.T.dK.Thr_PO3H2.Aca.dK.Thr_PO3H2.Aca}$$$$
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-
PEPTIDE1{meI.hHis.Aca.Cys_SEt.T.dK.Thr_PO3H2.T.dK.Thr_PO3H2}
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+
PEPTIDE1{meI.hHis.Aca.Cys_SEt.T.dK.Thr_PO3H2.T.dK.Thr_PO3H2}$$$$,
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+
PEPTIDE1{meI.hHis.Aca.Cys_SEt.T.dK.Thr_PO3H2.T.dK}|PEPTIDE2{Thr_PO3H2}$$$$`,
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},
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tgt: {
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notation: NOTATION.HELM,
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@@ -123,6 +124,7 @@ PEPTIDE1{meI.hHis.Aca.Cys_SEt.T.dK.Thr_PO3H2.T.dK.Thr_PO3H2}$$$$`
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['meI', 'hHis', 'Aca', 'Cys_SEt', 'T', 'dK', 'Thr_PO3H2', 'Aca', 'dK', 'Thr_PO3H2', 'Aca'],
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['Lys_Boc', 'hHis', 'Aca', 'Cys_SEt', 'T', 'dK', 'Thr_PO3H2', 'Aca', 'dK', 'Thr_PO3H2', 'Aca'],
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['meI', 'hHis', 'Aca', 'Cys_SEt', 'T', 'dK', 'Thr_PO3H2', 'T', 'dK', 'Thr_PO3H2'],
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+
['meI', 'hHis', 'Aca', 'Cys_SEt', 'T', 'dK', 'Thr_PO3H2', 'T', 'dK', 'Thr_PO3H2'],
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]
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}
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}
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@@ -132,7 +132,7 @@ class LibraryControlsManager {
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private _createControlsForm(): HTMLElement {
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const libraryControls = this.createLibraryControls();
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-
const inputsForm = ui.form(libraryControls);
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+
const inputsForm = ui.form(libraryControls, undefined, false);
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$(inputsForm).addClass('monomer-lib-controls-form');
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return inputsForm;
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@@ -868,6 +868,7 @@ class MonomerForm implements INewMonomerForm {
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await grok.dapi.files.writeAsText(LIB_PATH + libName, JSON.stringify(libJSON));
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await (await MonomerLibManager.getInstance()).loadLibraries(true);
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await this.refreshTable(monomer.symbol);
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this._molChanged = false; // reset the flag
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grok.shell.info(`Monomer ${monomer.symbol} was successfully saved in library ${libName}`);
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} catch (e) {
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grok.shell.error('Error saving monomer');
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