@datagrok/bio 2.15.5 → 2.15.6

package/CHANGELOG.md

@@ -1,5 +1,17 @@
 # Bio changelog
 
+## 2.15.6 (2024-09-27)
+
+### Bug fixes
+
+* Fix detectMacromolecule forbidding monomers '2,...', add test
+* Fix using IMonomerLibHelper.loadMonomerLibForTests
+* Fix cell renderer to reset reference sequence on reset current row
+* GROK-16699: Fix PepSeA container return meaningful error messages, unskip test
+* Fix test data monomers add aG, azG
+* Fix unskip toAtomicLevel tests depending on HelmHelper
+* Fix detectMacromolecule for harmonized sequences, add test
+
 ## 2.15.5 (2024-09-25)
 
 ### New features

package/detectors.js

@@ -385,7 +385,8 @@ class BioPackageDetectors extends DG.Package {
    */
   checkBadMultichar(freq) /* : string | null */ {
     for (const symbol of Object.keys(freq)) {
-      if (symbol && !isNaN(symbol)) return symbol; // performance evaluated better with RegExp
+      if (symbol && !isNaN(symbol))
+        return symbol; // performance evaluated better with RegExp
 
       const symbolLen = symbol.length;
       if (this.forbiddenMulticharFirst.includes(symbol[0]))
@@ -397,6 +398,10 @@ class BioPackageDetectors extends DG.Package {
         if (this.forbiddenMulticharMiddle.includes(c))
           return symbol;
       }
+      if (symbol.match(/^\d+\W+.*/))
+        // symbols like '2,...' are forbidden
+        // we require an alphabet character just after the leading digit(s)
+        return symbol;
     }
     return null;
   }