@datagrok/bio 2.14.2 → 2.15.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (77) hide show
  1. package/CHANGELOG.md +42 -0
  2. package/css/monomer-manager.css +66 -0
  3. package/detectors.js +7 -2
  4. package/dist/111.js +1 -1
  5. package/dist/111.js.map +1 -1
  6. package/dist/234.js +1 -1
  7. package/dist/234.js.map +1 -1
  8. package/dist/242.js.map +1 -1
  9. package/dist/603.js +1 -1
  10. package/dist/603.js.map +1 -1
  11. package/dist/682.js +1 -1
  12. package/dist/682.js.map +1 -1
  13. package/dist/705.js +1 -1
  14. package/dist/705.js.map +1 -1
  15. package/dist/778.js +1 -1
  16. package/dist/778.js.map +1 -1
  17. package/dist/793.js +1 -1
  18. package/dist/793.js.map +1 -1
  19. package/dist/801.js +2 -0
  20. package/dist/801.js.map +1 -0
  21. package/dist/950.js +1 -1
  22. package/dist/950.js.map +1 -1
  23. package/dist/980.js +2 -0
  24. package/dist/980.js.map +1 -0
  25. package/dist/package-test.js +6 -6
  26. package/dist/package-test.js.map +1 -1
  27. package/dist/package.js +5 -5
  28. package/dist/package.js.map +1 -1
  29. package/files/monomer-libraries/polytool-lib.json +48 -0
  30. package/files/monomer-libraries/sample-lib-Aca-colored.json +2 -2
  31. package/package.json +20 -12
  32. package/src/analysis/sequence-space.ts +2 -1
  33. package/src/demo/bio05-helm-msa-sequence-space.ts +1 -1
  34. package/src/package-test.ts +3 -1
  35. package/src/package-types.ts +9 -1
  36. package/src/package.ts +77 -33
  37. package/src/seq_align.ts +1 -1
  38. package/src/substructure-search/substructure-search.ts +2 -2
  39. package/src/tests/WebLogo-project-tests.ts +3 -4
  40. package/src/tests/activity-cliffs-tests.ts +5 -18
  41. package/src/tests/detectors-benchmark-tests.ts +24 -9
  42. package/src/tests/mm-distance-tests.ts +4 -3
  43. package/src/tests/monomer-libraries-tests.ts +3 -3
  44. package/src/tests/seq-handler-get-helm-tests.ts +88 -0
  45. package/src/tests/sequence-space-test.ts +4 -3
  46. package/src/tests/to-atomic-level-tests.ts +2 -0
  47. package/src/tests/to-atomic-level-ui-tests.ts +74 -0
  48. package/src/utils/cell-renderer.ts +3 -0
  49. package/src/utils/convert.ts +2 -2
  50. package/src/utils/cyclized.ts +20 -1
  51. package/src/utils/dimerized.ts +12 -0
  52. package/src/utils/get-region-func-editor.ts +1 -1
  53. package/src/utils/helm-to-molfile/converter/converter.ts +58 -30
  54. package/src/utils/helm-to-molfile/converter/mol-atoms.ts +2 -0
  55. package/src/utils/helm-to-molfile/converter/mol-bonds.ts +2 -0
  56. package/src/utils/helm-to-molfile/converter/mol-wrapper.ts +5 -1
  57. package/src/utils/helm-to-molfile/converter/monomer-wrapper.ts +7 -3
  58. package/src/utils/helm-to-molfile/converter/polymer.ts +21 -6
  59. package/src/utils/helm-to-molfile/converter/types.ts +11 -0
  60. package/src/utils/helm-to-molfile/utils.ts +11 -15
  61. package/src/utils/monomer-lib/lib-manager.ts +15 -1
  62. package/src/utils/monomer-lib/library-file-manager/file-manager.ts +1 -1
  63. package/src/utils/monomer-lib/library-file-manager/file-validator.ts +8 -0
  64. package/src/utils/monomer-lib/library-file-manager/ui.ts +150 -3
  65. package/src/utils/monomer-lib/monomer-lib.ts +59 -21
  66. package/src/utils/monomer-lib/monomer-manager/duplicate-monomer-manager.ts +155 -0
  67. package/src/utils/monomer-lib/monomer-manager/monomer-manager.ts +924 -0
  68. package/src/utils/multiple-sequence-alignment-ui.ts +3 -3
  69. package/src/utils/seq-helper/index.ts +1 -0
  70. package/src/utils/seq-helper/seq-helper.ts +131 -0
  71. package/src/utils/sequence-to-mol.ts +47 -18
  72. package/src/widgets/bio-substructure-filter.ts +9 -7
  73. package/src/widgets/package-settings-editor-widget.ts +6 -6
  74. package/src/widgets/representations.ts +12 -12
  75. package/dist/449.js +0 -2
  76. package/dist/449.js.map +0 -1
  77. /package/src/tests/{seq-handler-get-region.ts → seq-handler-get-region-tests.ts} +0 -0