@datagrok/bio 2.11.29 → 2.11.33

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (65) hide show
  1. package/CHANGELOG.md +25 -1
  2. package/dist/36.js +1 -1
  3. package/dist/36.js.map +1 -1
  4. package/dist/42.js +1 -1
  5. package/dist/42.js.map +1 -1
  6. package/dist/590.js +2 -0
  7. package/dist/590.js.map +1 -0
  8. package/dist/709.js +1 -2
  9. package/dist/709.js.map +1 -1
  10. package/dist/79.js.map +1 -1
  11. package/dist/895.js +3 -0
  12. package/dist/895.js.map +1 -0
  13. package/dist/package-test.js +8 -1
  14. package/dist/package-test.js.LICENSE.txt +1 -0
  15. package/dist/package-test.js.map +1 -1
  16. package/dist/package.js +8 -1
  17. package/dist/package.js.LICENSE.txt +1 -0
  18. package/dist/package.js.map +1 -1
  19. package/files/{data → monomer-libraries}/HELMCoreLibrary.json +594 -594
  20. package/files/tests/libraries/HELMmonomerSchema.json +96 -0
  21. package/files/tests/to-atomic-level-msa-fasta-input.csv +10 -0
  22. package/files/tests/to-atomic-level-msa-fasta-output.csv +2178 -0
  23. package/package.json +15 -13
  24. package/scripts/sequence_generator.md +48 -0
  25. package/scripts/sequence_generator.py +515 -256
  26. package/src/package-test.ts +4 -0
  27. package/src/package.ts +37 -33
  28. package/src/tests/WebLogo-layout-tests.ts +37 -0
  29. package/src/tests/WebLogo-positions-test.ts +5 -0
  30. package/src/tests/WebLogo-project-tests.ts +63 -0
  31. package/src/tests/activity-cliffs-tests.ts +3 -2
  32. package/src/tests/monomer-libraries-tests.ts +7 -4
  33. package/src/tests/msa-tests.ts +2 -2
  34. package/src/tests/pepsea-tests.ts +1 -1
  35. package/src/tests/renderers-test.ts +16 -16
  36. package/src/tests/scoring.ts +3 -2
  37. package/src/tests/splitters-test.ts +7 -12
  38. package/src/tests/substructure-filters-tests.ts +280 -57
  39. package/src/tests/to-atomic-level-tests.ts +35 -24
  40. package/src/tests/utils/sequences-generators.ts +6 -3
  41. package/src/tests/utils.ts +6 -6
  42. package/src/utils/docker.ts +36 -0
  43. package/src/utils/helm-to-molfile.ts +3 -3
  44. package/src/utils/monomer-lib/lib-manager.ts +116 -0
  45. package/src/utils/monomer-lib/library-file-manager/consts.ts +1 -0
  46. package/src/utils/monomer-lib/library-file-manager/custom-monomer-lib-handlers.ts +80 -0
  47. package/src/utils/monomer-lib/library-file-manager/event-manager.ts +58 -0
  48. package/src/utils/monomer-lib/library-file-manager/file-manager.ts +187 -0
  49. package/src/utils/monomer-lib/library-file-manager/file-validator.ts +56 -0
  50. package/src/utils/monomer-lib/library-file-manager/style.css +8 -0
  51. package/src/utils/monomer-lib/library-file-manager/ui.ts +224 -0
  52. package/src/utils/monomer-lib/monomer-lib.ts +114 -0
  53. package/src/utils/poly-tool/const.ts +28 -0
  54. package/src/utils/poly-tool/monomer-lib-handler.ts +115 -0
  55. package/src/utils/poly-tool/types.ts +6 -0
  56. package/src/utils/poly-tool/ui.ts +2 -2
  57. package/src/viewers/vd-regions-viewer.ts +9 -4
  58. package/src/viewers/web-logo-viewer.ts +10 -5
  59. package/src/widgets/bio-substructure-filter-helm.ts +168 -0
  60. package/src/widgets/bio-substructure-filter-types.ts +131 -0
  61. package/src/widgets/bio-substructure-filter.ts +218 -175
  62. package/src/widgets/composition-analysis-widget.ts +1 -1
  63. package/files/libraries/HELMCoreLibrary.json +0 -18218
  64. package/src/utils/monomer-lib.ts +0 -305
  65. /package/dist/{709.js.LICENSE.txt → 895.js.LICENSE.txt} +0 -0
package/dist/package-test.js.LICENSE.txt ADDED
@@ -0,0 +1 @@
1
+ /** @license URI.js v4.4.1 (c) 2011 Gary Court. License: http://github.com/garycourt/uri-js */