@datagrok/bio 2.11.10 → 2.11.11

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Files changed (3) hide show
  1. package/CHANGELOG.md +1 -0
  2. package/README.md +10 -10
  3. package/package.json +1 -1
package/CHANGELOG.md CHANGED
@@ -10,6 +10,7 @@
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  * Fix for min seq length 10, tests.
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  * Fix user library settings for tests
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  * Fix test substructureFilter/helm
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+ * Fix README.md images, GIFs size
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  ## 2.11.0 (2023-10-25)
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package/README.md CHANGED
@@ -16,7 +16,7 @@ initial notation. Datagrok allows you to convert sequences between different not
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  See:
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  * [detectMacromolecule()](../Bio/detectors.js)
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- * [class NotationConverter](../../libraries/bio/src/utils/notation-converter.ts)
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+ * [class UnitsHandler](../../libraries/bio/src/utils/units-handler.ts)
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  ## Atomic-Level structures from sequences
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  You can easily run this feature for any sequence data using the Bio package and accessing it from the top menu.
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- ![Restoring structure atomic level](../../help/uploads/macromolecules/restoreStructures.gif)
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+ ![Restoring structure atomic level](../../help/uploads/macromolecules/restore-structures-800.gif)
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  See:
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@@ -52,7 +52,7 @@ See:
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  Splitting to monomers allows splitting aligned sequences in separate monomers.
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- ![Splitting to monomers](../../help/uploads/macromolecules/splitting-to-monomers.gif)
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+ ![Splitting to monomers](../../help/uploads/macromolecules/splitting-to-monomers-800.gif)
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  See:
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@@ -108,7 +108,7 @@ is not specified, then the Logo will be plotted from the first (till the last) p
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  See also:
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- * [WebLogo](../../libraries/)
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+ * [WebLogo](../../help/visualize/viewers/web-logo.md)
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  * [Viewers](../../help/visualize/viewers/viewers.md)
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  * [Table view](../../help/datagrok/concepts/table.md)
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@@ -122,7 +122,7 @@ the Bio package. Depending on the sequence type, different distance functions wi
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  To launch the analysis from the top menu, select Bio | Structure | Sequence space.
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- ![Sequence space](../../help/uploads/macromolecules/sequence_space.gif)
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+ ![Sequence space](../../help/uploads/macromolecules/sequence_space-800.gif)
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  See:
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@@ -138,7 +138,7 @@ A custom scatter plot with cliffs will be added to the right side of the grid. T
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  To launch the analysis from the top menu, select Bio | SAR | Sequence Activity Cliffs.
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- ![Running activity cliffs](../../help/uploads/macromolecules/activity_cliffs_open.gif)
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+ ![Running activity cliffs](../../help/uploads/macromolecules/activity_cliffs_open-800.gif)
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  See:
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@@ -150,7 +150,7 @@ Similarity Search tool allows users to find sequences that are most similar to t
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  To launch the search from the top menu, select Bio | Search | Similarity Search
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- ![Running similarity search](../../help/uploads/macromolecules/similarity_search.gif)
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+ ![Running similarity search](../../help/uploads/macromolecules/similarity_search-800.gif)
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  ## Diversity Search
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  To launch the search from the top menu, select Bio | Search | Diversity Search
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- ![Running diversity search](../../help/uploads/macromolecules/diversity_search.gif)
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+ ![Running diversity search](../../help/uploads/macromolecules/diversity_search-800.gif)
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  ## Sequence scoring
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  Identity scoring can be found in the top menu: **Bio → Calculate → Identity...**.
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- ![Running identity scoring](../../help/uploads/macromolecules/identity-scoring.gif)
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+ ![Running identity scoring](../../help/uploads/macromolecules/identity_scoring-800.gif)
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  ### Similarity
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  Similarity scoring can be found in the top menu: **Bio → Calculate → Similarity...**.
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- ![Running similarity scoring](../../help/uploads/macromolecules/similarity-scoring.gif)
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+ ![Running similarity scoring](../../help/uploads/macromolecules/similarity_scoring-800.gif)
package/package.json CHANGED
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  "name": "Leonid Stolbov",
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  "email": "lstolbov@datagrok.ai"
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  },
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- "version": "2.11.10",
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+ "version": "2.11.11",
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  "description": "Bioinformatics support (import/export of sequences, conversion, visualization, analysis). [See more](https://github.com/datagrok-ai/public/blob/master/packages/Bio/README.md) for details.",
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  "repository": {
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  "type": "git",