@datagrok/bio 2.10.10 → 2.10.11

package/package.json

@@ -5,7 +5,7 @@
     "name": "Leonid Stolbov",
     "email": "lstolbov@datagrok.ai"
   },
-  "version": "2.10.10",
+  "version": "2.10.11",
   "description": "Bioinformatics support (import/export of sequences, conversion, visualization, analysis). [See more](https://github.com/datagrok-ai/public/blob/master/packages/Bio/README.md) for details.",
   "repository": {
     "type": "git",

package/src/demo/bio01b-hierarchical-clustering-and-activity-cliffs.ts

@@ -65,6 +65,7 @@ export async function demoBio01bUI() {
         delay: 2000,
       })
       .step('Cluster sequences', async () => {
+        const progressBar = DG.TaskBarProgressIndicator.create(`Running sequence clustering...`);
         const seqCol: DG.Column<string> = df.getCol('sequence');
         const seqList = seqCol.toList();
         const distance: DistanceMatrix = DistanceMatrix.calc(seqList, (aSeq: string, bSeq: string) => {
@@ -72,6 +73,7 @@ export async function demoBio01bUI() {
           return levDistance / ((aSeq.length + bSeq.length) / 2);
         });
         const treeRoot = await treeHelper.hierarchicalClusteringByDistance(distance, 'ward');
+        progressBar.close();
         dendrogramSvc.injectTreeForGrid(view.grid, treeRoot, undefined, 150, undefined);
 
         // adjust for visual

package/src/viewers/vd-regions-viewer.ts

@@ -192,7 +192,7 @@ export class VdRegionsViewer extends DG.JsViewer implements IVdRegionsViewer {
       case PROPS.positionHeight:
         for (let orderI = 0; orderI < this.logos.length; ++orderI) {
           for (const chain of this.chains)
-            this.logos[orderI][chain].setOptions({[wlPROPS.positionWidth]: this.positionWidth});
+            this.logos[orderI][chain].setOptions({[wlPROPS.positionHeight]: this.positionHeight});
         }
         this.calcSize();
         break;