@datagrok/bio 2.10.0 → 2.10.2
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- package/CHANGELOG.md +10 -0
- package/detectors.js +5 -3
- package/dist/package-test.js +1 -1
- package/dist/package-test.js.map +1 -1
- package/dist/package.js +1 -1
- package/dist/package.js.map +1 -1
- package/files/data/sample_HELM_empty_unkn.csv +11 -0
- package/package.json +2 -2
- package/src/apps/get-region-app.ts +30 -21
- package/src/package.ts +16 -10
- package/src/tests/detectors-tests.ts +13 -2
- package/src/tests/renderers-monomer-placer.ts +25 -12
- package/src/utils/get-region-func-editor.ts +30 -10
- package/src/viewers/web-logo-viewer.ts +65 -38
package/CHANGELOG.md
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@@ -1,5 +1,15 @@
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# Bio changelog
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## 2.11.0 (WIP)
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### Bug fixes
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* Fix GetRegion to detect semantic type and renderer for created column.
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* Fix GetRegion dialog column name field for default value.
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* Fix WebLogo viewer for gaps with Helm.
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* Fix cell renderer for empty values MSA.
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* Fix detectMacromolecule to ignore empty seqs.
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## 2.10.0 (2023-09-06)
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### Features
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package/detectors.js
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@@ -98,9 +98,11 @@ class BioPackageDetectors extends DG.Package {
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if (col.type !== DG.TYPE.STRING) return null;
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const categoriesSample = [...new Set((col.length < SEQ_SAMPLE_LIMIT ?
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wu.count(0).take(Math.min(SEQ_SAMPLE_LIMIT, col.length)).map((rowI) => col.get(rowI)) :
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this.sample(col, SEQ_SAMPLE_LIMIT))
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.map((seq) => !!seq ? seq.substring(0, SEQ_SAMPLE_LENGTH_LIMIT * 5) : '')
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.filter((seq) => seq.length !== 0/* skip empty values for detector */),
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)];
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// To collect alphabet freq three strategies can be used:
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// as chars, as fasta (single or within square brackets), as with the separator.
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