@datagrok/bio 2.1.9 → 2.1.11

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (9) hide show
  1. package/.eslintrc.json +1 -0
  2. package/detectors.js +12 -12
  3. package/dist/package-test.js +7 -2
  4. package/dist/package.js +3 -2
  5. package/files/tests/testSmilesShort.csv +11 -0
  6. package/package.json +1 -1
  7. package/src/package.ts +3 -1
  8. package/src/tests/detectors-tests.ts +6 -0
  9. package/{test-Bio-62cc009524f3-820f73b0.html → test-Bio-91c83d8913ff-bb573307.html} +100 -99
package/files/tests/testSmilesShort.csv ADDED
@@ -0,0 +1,11 @@
1
+ SMILES
2
+ NO
3
+ NO
4
+ NO
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+ NO
6
+ NO
7
+ NO
8
+ NO
9
+ NO
10
+ NO
11
+ NO
package/package.json CHANGED
@@ -5,7 +5,7 @@
5
5
  "name": "Leonid Stolbov",
6
6
  "email": "lstolbov@datagrok.ai"
7
7
  },
8
- "version": "2.1.9",
8
+ "version": "2.1.11",
9
9
  "description": "Bio is a [package](https://datagrok.ai/help/develop/develop#packages) for the [Datagrok](https://datagrok.ai) platform",
10
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  "repository": {
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11
  "type": "git",
package/src/package.ts CHANGED
@@ -97,6 +97,8 @@ export async function initBio() {
97
97
  }
98
98
 
99
99
  async function loadLibraries() {
100
+ //TODO handle if files are in place
101
+
100
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  let uploadedLibraries: string[] = Object.values(await grok.dapi.userDataStorage.get(STORAGE_NAME, true));
101
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  if (uploadedLibraries.length == 0 && monomerLib == null)
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  monomerLib = new MonomerLib({});
@@ -396,7 +398,7 @@ export async function toAtomicLevel(df: DG.DataFrame, macroMolecule: DG.Column):
396
398
  return;
397
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  const monomersLibFile = await _package.files.readAsText(HELM_CORE_LIB_FILENAME);
398
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  const monomersLibObject: any[] = JSON.parse(monomersLibFile);
399
- _toAtomicLevel(df, macroMolecule, monomersLibObject);
401
+ await _toAtomicLevel(df, macroMolecule, monomersLibObject);
400
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  }
401
403
 
402
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  //top-menu: Bio | MSA...
package/src/tests/detectors-tests.ts CHANGED
@@ -132,6 +132,7 @@ MWRSWY-CKHP
132
132
  testIdCsv = 'testIdCsv',
133
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  testSmilesCsv = 'testSmilesCsv',
134
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  testSmiles2Csv = 'testSmiles2Csv',
135
+ testSmilesShort = 'testSmilesShort',
135
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  testCerealCsv = 'testCerealCsv',
136
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  testActivityCliffsCsv = 'testActivityCliffsCsv',
137
138
  testSpgi100 = 'testSpgi100',
@@ -154,6 +155,7 @@ MWRSWY-CKHP
154
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  [Samples.testIdCsv]: 'System:AppData/Bio/tests/testId.csv',
155
156
  [Samples.testSmilesCsv]: 'System:AppData/Bio/tests/testSmiles.csv',
156
157
  [Samples.testSmiles2Csv]: 'System:AppData/Bio/tests/testSmiles2.csv',
158
+ [Samples.testSmilesShort]: 'System:AppData/Bio/tests/testSmilesShort.csv',
157
159
  [Samples.testActivityCliffsCsv]: 'System:AppData/Bio/tests/testActivityCliffs.csv', // smiles
158
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  [Samples.testCerealCsv]: 'System:AppData/Bio/tests/testCereal.csv',
159
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  [Samples.testSpgi100]: 'System:AppData/Bio/tests/testSpgi100.csv',
@@ -345,6 +347,10 @@ MWRSWY-CKHP
345
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  await _testNeg(readSamples(Samples.testSmiles2Csv), 'SMILES');
346
348
  });
347
349
 
350
+ test('samplesTestSmilesShortNegativeSmiles', async () => {
351
+ await _testNeg(readSamples(Samples.testSmilesShort), 'SMILES');
352
+ });
353
+
348
354
  test('samplesTestActivityCliffsNegativeSmiles', async () => {
349
355
  await _testNeg(readSamples(Samples.testActivityCliffsCsv), 'smiles');
350
356
  });
package/{test-Bio-62cc009524f3-820f73b0.html → test-Bio-91c83d8913ff-bb573307.html} RENAMED
@@ -1,4 +1,4 @@
1
- <html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=62cc009524f3. Commit 820f73b0.</title><style type="text/css">html,
1
+ <html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=91c83d8913ff. Commit bb573307.</title><style type="text/css">html,
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  body {
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  font-family: Arial, Helvetica, sans-serif;
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  font-size: 1rem;
@@ -229,7 +229,7 @@ header {
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  font-size: 1rem;
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  padding: 0 0.5rem;
231
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  }
232
- </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=62cc009524f3. Commit 820f73b0.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-11-21 17:50:27</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">51.915s</div></div><div class="suite-tests"><div class="test-result passed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">passed</div><div class="test-duration">35.984s</div></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
232
+ </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=91c83d8913ff. Commit bb573307.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-11-30 16:25:48</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">49.92s</div></div><div class="suite-tests"><div class="test-result passed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">passed</div><div class="test-duration">35.236s</div></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
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  at Generator.next (&lt;anonymous&gt;)
234
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  at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:28:58)
235
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  at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Using web root: http://localhost:8080</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:40:11
@@ -244,140 +244,141 @@ header {
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  at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
245
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  at runMicrotasks (&lt;anonymous&gt;)
246
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  at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Test result : Success : 1 : Bio.Palettes.testPaletteN : OK
247
- Test result : Success : 0 : Bio.Palettes.testPaletteAA : OK
247
+ Test result : Success : 1 : Bio.Palettes.testPaletteAA : OK
248
248
  Test result : Success : 0 : Bio.Palettes.testPalettePtMe : OK
249
- Test result : Success : 266 : Bio.detectors.NegativeEmpty : OK
250
- Test result : Success : 46 : Bio.detectors.Negative1 : OK
251
- Test result : Success : 76 : Bio.detectors.Negative2 : OK
252
- Test result : Success : 25 : Bio.detectors.Negative3 : OK
253
- Test result : Success : 647 : Bio.detectors.NegativeSmiles : OK
254
- Test result : Success : 64 : Bio.detectors.Dna1 : OK
255
- Test result : Success : 24 : Bio.detectors.Rna1 : OK
256
- Test result : Success : 23 : Bio.detectors.AA1 : OK
257
- Test result : Success : 17 : Bio.detectors.MsaDna1 : OK
258
- Test result : Success : 34 : Bio.detectors.MsaAA1 : OK
259
- Test result : Success : 23 : Bio.detectors.SepDna : OK
260
- Test result : Success : 24 : Bio.detectors.SepRna : OK
261
- Test result : Success : 24 : Bio.detectors.SepPt : OK
262
- Test result : Success : 32 : Bio.detectors.SepUn1 : OK
263
- Test result : Success : 41 : Bio.detectors.SepUn2 : OK
264
- Test result : Success : 33 : Bio.detectors.SepMsaN1 : OK
265
- Test result : Success : 750 : Bio.detectors.SamplesFastaCsvPt : OK
266
- Test result : Success : 17 : Bio.detectors.SamplesFastaCsvNegativeEntry : OK
267
- Test result : Success : 16 : Bio.detectors.SamplesFastaCsvNegativeLength : OK
268
- Test result : Success : 41 : Bio.detectors.SamplesFastaCsvNegativeUniProtKB : OK
269
- Test result : Success : 347 : Bio.detectors.SamplesFastaFastaPt : OK
270
- Test result : Success : 1222 : Bio.detectors.samplesPeptidesComplexNegativeID : OK
271
- Test result : Success : 43 : Bio.detectors.SamplesPeptidesComplexNegativeMeasured : OK
272
- Test result : Success : 20 : Bio.detectors.SamplesPeptidesComplexNegativeValue : OK
273
- Test result : Success : 300 : Bio.detectors.samplesMsaComplexUn : OK
274
- Test result : Success : 7 : Bio.detectors.samplesMsaComplexNegativeActivity : OK
275
- Test result : Success : 191 : Bio.detectors.samplesIdCsvNegativeID : OK
276
- Test result : Success : 172 : Bio.detectors.samplesSarSmallCsvNegativeSmiles : OK
277
- Test result : Success : 168 : Bio.detectors.samplesHelmCsvHELM : OK
278
- Test result : Success : 9 : Bio.detectors.samplesHelmCsvNegativeActivity : OK
279
- Test result : Success : 180 : Bio.detectors.samplesTestHelmNegativeID : OK
280
- Test result : Success : 32 : Bio.detectors.samplesTestHelmNegativeTestType : OK
281
- Test result : Success : 26 : Bio.detectors.samplesTestHelmPositiveHelmString : OK
282
- Test result : Success : 20 : Bio.detectors.samplesTestHelmNegativeValid : OK
283
- Test result : Success : 7 : Bio.detectors.samplesTestHelmNegativeMolWeight : OK
284
- Test result : Success : 39 : Bio.detectors.samplesTestHelmNegativeMolFormula : OK
285
- Test result : Success : 16 : Bio.detectors.samplesTestHelmNegativeSmiles : OK
286
- Test result : Success : 1164 : Bio.detectors.samplesTestDemogNegativeAll : OK
287
- Test result : Success : 366 : Bio.detectors.samplesTestSmiles2NegativeSmiles : OK
288
- Test result : Success : 183 : Bio.detectors.samplesTestActivityCliffsNegativeSmiles : OK
289
- Test result : Success : 149 : Bio.detectors.samplesFastaPtPosSequence : OK
249
+ Test result : Success : 228 : Bio.detectors.NegativeEmpty : OK
250
+ Test result : Success : 36 : Bio.detectors.Negative1 : OK
251
+ Test result : Success : 33 : Bio.detectors.Negative2 : OK
252
+ Test result : Success : 38 : Bio.detectors.Negative3 : OK
253
+ Test result : Success : 586 : Bio.detectors.NegativeSmiles : OK
254
+ Test result : Success : 56 : Bio.detectors.Dna1 : OK
255
+ Test result : Success : 28 : Bio.detectors.Rna1 : OK
256
+ Test result : Success : 42 : Bio.detectors.AA1 : OK
257
+ Test result : Success : 35 : Bio.detectors.MsaDna1 : OK
258
+ Test result : Success : 38 : Bio.detectors.MsaAA1 : OK
259
+ Test result : Success : 27 : Bio.detectors.SepDna : OK
260
+ Test result : Success : 25 : Bio.detectors.SepRna : OK
261
+ Test result : Success : 38 : Bio.detectors.SepPt : OK
262
+ Test result : Success : 18 : Bio.detectors.SepUn1 : OK
263
+ Test result : Success : 17 : Bio.detectors.SepUn2 : OK
264
+ Test result : Success : 18 : Bio.detectors.SepMsaN1 : OK
265
+ Test result : Success : 674 : Bio.detectors.SamplesFastaCsvPt : OK
266
+ Test result : Success : 24 : Bio.detectors.SamplesFastaCsvNegativeEntry : OK
267
+ Test result : Success : 21 : Bio.detectors.SamplesFastaCsvNegativeLength : OK
268
+ Test result : Success : 56 : Bio.detectors.SamplesFastaCsvNegativeUniProtKB : OK
269
+ Test result : Success : 345 : Bio.detectors.SamplesFastaFastaPt : OK
270
+ Test result : Success : 1174 : Bio.detectors.samplesPeptidesComplexNegativeID : OK
271
+ Test result : Success : 7 : Bio.detectors.SamplesPeptidesComplexNegativeMeasured : OK
272
+ Test result : Success : 22 : Bio.detectors.SamplesPeptidesComplexNegativeValue : OK
273
+ Test result : Success : 360 : Bio.detectors.samplesMsaComplexUn : OK
274
+ Test result : Success : 14 : Bio.detectors.samplesMsaComplexNegativeActivity : OK
275
+ Test result : Success : 239 : Bio.detectors.samplesIdCsvNegativeID : OK
276
+ Test result : Success : 248 : Bio.detectors.samplesSarSmallCsvNegativeSmiles : OK
277
+ Test result : Success : 275 : Bio.detectors.samplesHelmCsvHELM : OK
278
+ Test result : Success : 12 : Bio.detectors.samplesHelmCsvNegativeActivity : OK
279
+ Test result : Success : 246 : Bio.detectors.samplesTestHelmNegativeID : OK
280
+ Test result : Success : 16 : Bio.detectors.samplesTestHelmNegativeTestType : OK
281
+ Test result : Success : 18 : Bio.detectors.samplesTestHelmPositiveHelmString : OK
282
+ Test result : Success : 6 : Bio.detectors.samplesTestHelmNegativeValid : OK
283
+ Test result : Success : 15 : Bio.detectors.samplesTestHelmNegativeMolWeight : OK
284
+ Test result : Success : 6 : Bio.detectors.samplesTestHelmNegativeMolFormula : OK
285
+ Test result : Success : 18 : Bio.detectors.samplesTestHelmNegativeSmiles : OK
286
+ Test result : Success : 966 : Bio.detectors.samplesTestDemogNegativeAll : OK
287
+ Test result : Success : 332 : Bio.detectors.samplesTestSmiles2NegativeSmiles : OK
288
+ Test result : Success : 138 : Bio.detectors.samplesTestSmilesShortNegativeSmiles : OK
289
+ Test result : Success : 166 : Bio.detectors.samplesTestActivityCliffsNegativeSmiles : OK
290
+ Test result : Success : 144 : Bio.detectors.samplesFastaPtPosSequence : OK
290
291
  Test result : Success : 141 : Bio.detectors.samplesTestCerealNegativeCerealName : OK
291
- Test result : Success : 228 : Bio.detectors.samplesTestSpgi100NegativeStereoCategory : OK
292
- Test result : Success : 7 : Bio.detectors.samplesTestSpgi100NegativeScaffoldNames : OK
293
- Test result : Success : 7 : Bio.detectors.samplesTestSpgi100NegativePrimaryScaffoldName : OK
294
- Test result : Success : 7 : Bio.detectors.samplesTestSpgi100NegativeSampleName : OK
295
- Test result : Success : 190 : Bio.detectors.samplesTestUnichemSourcesNegativeSrcUrl : OK
292
+ Test result : Success : 221 : Bio.detectors.samplesTestSpgi100NegativeStereoCategory : OK
293
+ Test result : Success : 10 : Bio.detectors.samplesTestSpgi100NegativeScaffoldNames : OK
294
+ Test result : Success : 6 : Bio.detectors.samplesTestSpgi100NegativePrimaryScaffoldName : OK
295
+ Test result : Success : 6 : Bio.detectors.samplesTestSpgi100NegativeSampleName : OK
296
+ Test result : Success : 196 : Bio.detectors.samplesTestUnichemSourcesNegativeSrcUrl : OK
296
297
  Test result : Success : 5 : Bio.detectors.samplesTestUnichemSourcesNegativeBaseIdUrl : OK
297
- Test result : Success : 158 : Bio.detectors.samplesTestDmvOfficesNegativeOfficeName : OK
298
- Test result : Success : 10 : Bio.detectors.samplesTestDmvOfficesNegativeCity : OK
299
- Test result : Success : 300 : Bio.detectors.samplesTestAlertCollectionNegativeSmarts : OK
300
- Test result : Success : 140 : Bio.detectors.samplesTestSpgiNegativeVals : OK
301
- Test result : Success : 12 : Bio.detectorsBenchmark.separatorDnaShorts50Few50 : OK
302
- Test result : Success : 10234 : Bio.detectorsBenchmark.separatorDnaShorts50Many1E6 : OK
303
- Test result : Success : 1702 : Bio.MSA.isCorrect : OK
304
- Test result : Success : 95 : Bio.MSA.isCorrectLong : OK
305
- Test result : Success : 1274 : Bio.sequenceSpace.sequenceSpaceOpens : OK
306
- Test result : Success : 609 : Bio.sequenceSpace.sequenceSpaceWithEmptyRows : OK
307
- Test result : Success : 934 : Bio.activityCliffs.activityCliffsOpens : OK
308
- Test result : Success : 1024 : Bio.activityCliffs.activityCliffsWithEmptyRows : OK
298
+ Test result : Success : 183 : Bio.detectors.samplesTestDmvOfficesNegativeOfficeName : OK
299
+ Test result : Success : 16 : Bio.detectors.samplesTestDmvOfficesNegativeCity : OK
300
+ Test result : Success : 166 : Bio.detectors.samplesTestAlertCollectionNegativeSmarts : OK
301
+ Test result : Success : 249 : Bio.detectors.samplesTestSpgiNegativeVals : OK
302
+ Test result : Success : 13 : Bio.detectorsBenchmark.separatorDnaShorts50Few50 : OK
303
+ Test result : Success : 10007 : Bio.detectorsBenchmark.separatorDnaShorts50Many1E6 : OK
304
+ Test result : Success : 1882 : Bio.MSA.isCorrect : OK
305
+ Test result : Success : 152 : Bio.MSA.isCorrectLong : OK
306
+ Test result : Success : 1316 : Bio.sequenceSpace.sequenceSpaceOpens : OK
307
+ Test result : Success : 600 : Bio.sequenceSpace.sequenceSpaceWithEmptyRows : OK
308
+ Test result : Success : 921 : Bio.activityCliffs.activityCliffsOpens : OK
309
+ Test result : Success : 1014 : Bio.activityCliffs.activityCliffsWithEmptyRows : OK
309
310
  Test result : Success : 1 : Bio.splitters.fastaMulti : OK
310
311
  Test result : Success : 1 : Bio.splitters.helm1 : OK
311
312
  Test result : Success : 1 : Bio.splitters.helm2 : OK
312
- Test result : Success : 1 : Bio.splitters.helm3-multichar : OK
313
+ Test result : Success : 0 : Bio.splitters.helm3-multichar : OK
313
314
  Test result : Success : 0 : Bio.splitters.testHelm1 : OK
314
- Test result : Success : 1 : Bio.splitters.testHelm2 : OK
315
- Test result : Success : 0 : Bio.splitters.testHelm3 : OK
316
- Test result : Success : 352 : Bio.splitters.splitToMonomers : OK
315
+ Test result : Success : 0 : Bio.splitters.testHelm2 : OK
316
+ Test result : Success : 1 : Bio.splitters.testHelm3 : OK
317
+ Test result : Success : 393 : Bio.splitters.splitToMonomers : OK
317
318
  Test result : Success : 2 : Bio.splitters.getHelmMonomers : OK
318
- Test result : Success : 92 : Bio.renderers.long sequence performance : OK
319
- Test result : Success : 964 : Bio.renderers.many sequence performance : OK
320
- Test result : Success : 367 : Bio.renderers.rendererMacromoleculeFasta : OK
321
- Test result : Success : 254 : Bio.renderers.rendererMacromoleculeSeparator : OK
322
- Test result : Success : 97 : Bio.renderers.rendererMacromoleculeDifference : OK
323
- Test result : Success : 554 : Bio.renderers.afterMsa : OK
324
- Test result : Success : 389 : Bio.renderers.afterConvert : OK
325
- Test result : Success : 215 : Bio.renderers.selectRendererBySemType : OK
326
- Test result : Success : 8 : Bio.converters.testFastaPtToSeparator : OK
327
- Test result : Success : 7 : Bio.converters.testFastaDnaToSeparator : OK
319
+ Test result : Success : 90 : Bio.renderers.long sequence performance : OK
320
+ Test result : Success : 665 : Bio.renderers.many sequence performance : OK
321
+ Test result : Success : 397 : Bio.renderers.rendererMacromoleculeFasta : OK
322
+ Test result : Success : 269 : Bio.renderers.rendererMacromoleculeSeparator : OK
323
+ Test result : Success : 100 : Bio.renderers.rendererMacromoleculeDifference : OK
324
+ Test result : Success : 560 : Bio.renderers.afterMsa : OK
325
+ Test result : Success : 395 : Bio.renderers.afterConvert : OK
326
+ Test result : Success : 223 : Bio.renderers.selectRendererBySemType : OK
327
+ Test result : Success : 7 : Bio.converters.testFastaPtToSeparator : OK
328
+ Test result : Success : 6 : Bio.converters.testFastaDnaToSeparator : OK
328
329
  Test result : Success : 6 : Bio.converters.testFastaRnaToSeparator : OK
329
- Test result : Success : 6 : Bio.converters.testFastaGapsToSeparator : OK
330
+ Test result : Success : 7 : Bio.converters.testFastaGapsToSeparator : OK
330
331
  Test result : Success : 4 : Bio.converters.testFastaPtToHelm : OK
331
332
  Test result : Success : 3 : Bio.converters.testFastaDnaToHelm : OK
332
- Test result : Success : 4 : Bio.converters.testFastaRnaToHelm : OK
333
- Test result : Success : 11 : Bio.converters.testFastaGapsToHelm : OK
333
+ Test result : Success : 3 : Bio.converters.testFastaRnaToHelm : OK
334
+ Test result : Success : 3 : Bio.converters.testFastaGapsToHelm : OK
334
335
  Test result : Success : 1 : Bio.converters.testSeparatorPtToFasta : OK
335
336
  Test result : Success : 1 : Bio.converters.testSeparatorDnaToFasta : OK
336
337
  Test result : Success : 1 : Bio.converters.testSeparatorRnaToFasta : OK
337
338
  Test result : Success : 1 : Bio.converters.testSeparatorGapsToFasta : OK
338
339
  Test result : Success : 1 : Bio.converters.testSeparatorPtToHelm : OK
339
- Test result : Success : 1 : Bio.converters.testSeparatorDnaToHelm : OK
340
+ Test result : Success : 0 : Bio.converters.testSeparatorDnaToHelm : OK
340
341
  Test result : Success : 1 : Bio.converters.testSeparatorRnaToHelm : OK
341
- Test result : Success : 1 : Bio.converters.testSeparatorGapsToHelm : OK
342
+ Test result : Success : 0 : Bio.converters.testSeparatorGapsToHelm : OK
342
343
  Test result : Success : 1 : Bio.converters.testHelmDnaToFasta : OK
343
344
  Test result : Success : 1 : Bio.converters.testHelmRnaToFasta : OK
344
345
  Test result : Success : 1 : Bio.converters.testHelmPtToFasta : OK
345
346
  Test result : Success : 1 : Bio.converters.testHelmDnaToSeparator : OK
346
- Test result : Success : 0 : Bio.converters.testHelmRnaToSeparator : OK
347
- Test result : Success : 0 : Bio.converters.testHelmPtToSeparator : OK
347
+ Test result : Success : 1 : Bio.converters.testHelmRnaToSeparator : OK
348
+ Test result : Success : 1 : Bio.converters.testHelmPtToSeparator : OK
348
349
  Test result : Success : 4 : Bio.converters.testHelmLoneRibose : OK
349
- Test result : Success : 2 : Bio.converters.testHelmLoneDeoxyribose : OK
350
- Test result : Success : 4 : Bio.converters.testHelmLonePhosphorus : OK
350
+ Test result : Success : 3 : Bio.converters.testHelmLoneDeoxyribose : OK
351
+ Test result : Success : 3 : Bio.converters.testHelmLonePhosphorus : OK
351
352
  Test result : Success : 1 : Bio.fastaFileHandler.testNormalFormatting : OK
352
353
  Test result : Success : 0 : Bio.fastaFileHandler.testExtraSpaces : OK
353
- Test result : Success : 1 : Bio.fastaFileHandler.testExtraNewlines : OK
354
- Test result : Success : 0 : Bio.fastaExport.wrapSequenceSingle : OK
355
- Test result : Success : 1 : Bio.fastaExport.wrapSequenceMulti : OK
356
- Test result : Success : 1 : Bio.fastaExport.saveAsFastaTest1 : OK
354
+ Test result : Success : 0 : Bio.fastaFileHandler.testExtraNewlines : OK
355
+ Test result : Success : 1 : Bio.fastaExport.wrapSequenceSingle : OK
356
+ Test result : Success : 0 : Bio.fastaExport.wrapSequenceMulti : OK
357
+ Test result : Success : 2 : Bio.fastaExport.saveAsFastaTest1 : OK
357
358
  Test result : Success : 1 : Bio.fastaExport.saveAsFastaTest2 : OK
358
359
  Test result : Success : 1 : Bio.bio.testGetStatsHelm1 : OK
359
360
  Test result : Success : 1 : Bio.bio.testGetStatsN1 : OK
360
361
  Test result : Success : 0 : Bio.bio.testGetAlphabetSimilarity : OK
361
- Test result : Success : 2 : Bio.bio.testPickupPaletteN1 : OK
362
+ Test result : Success : 1 : Bio.bio.testPickupPaletteN1 : OK
362
363
  Test result : Success : 1 : Bio.bio.testPickupPaletteN1e : OK
363
- Test result : Success : 1 : Bio.bio.testPickupPaletteAA1 : OK
364
+ Test result : Success : 2 : Bio.bio.testPickupPaletteAA1 : OK
364
365
  Test result : Success : 1 : Bio.bio.testPickupPaletteX : OK
365
366
  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerSingle : OK
366
367
  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerShort : OK
367
368
  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerLong56 : OK
368
369
  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerComplexFirstPartShort : OK
369
370
  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerComplexFirstPartLong56 : OK
370
- Test result : Success : 133 : Bio.WebLogo-positions.allPositions : OK
371
- Test result : Success : 139 : Bio.WebLogo-positions.positions with shrinkEmptyTail option true (filterd) : OK
372
- Test result : Success : 119 : Bio.WebLogo-positions.positions with skipEmptyPositions option : OK
371
+ Test result : Success : 154 : Bio.WebLogo-positions.allPositions : OK
372
+ Test result : Success : 123 : Bio.WebLogo-positions.positions with shrinkEmptyTail option true (filterd) : OK
373
+ Test result : Success : 127 : Bio.WebLogo-positions.positions with skipEmptyPositions option : OK
373
374
  Test result : Success : 4 : Bio.checkInputColumn.testMsaPos : OK
374
- Test result : Success : 1 : Bio.checkInputColumn.testMsaNegHelm : OK
375
+ Test result : Success : 2 : Bio.checkInputColumn.testMsaNegHelm : OK
375
376
  Test result : Success : 1 : Bio.checkInputColumn.testMsaNegUN : OK
376
- Test result : Success : 1 : Bio.checkInputColumn.testGetActionFunctionMeta : OK
377
- Test result : Success : 493 : Bio.similarity/diversity.similaritySearchViewer : OK
378
- Test result : Success : 337 : Bio.similarity/diversity.diversitySearchViewer : OK
379
- Test result : Success : 242 : Bio.substructureFilters.fasta : OK
380
- Test result : Success : 425 : Bio.substructureFilters.separator : OK
377
+ Test result : Success : 0 : Bio.checkInputColumn.testGetActionFunctionMeta : OK
378
+ Test result : Success : 476 : Bio.similarity/diversity.similaritySearchViewer : OK
379
+ Test result : Success : 350 : Bio.similarity/diversity.diversitySearchViewer : OK
380
+ Test result : Success : 257 : Bio.substructureFilters.fasta : OK
381
+ Test result : Success : 434 : Bio.substructureFilters.separator : OK
381
382
  </pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:74:11
382
383
  at Generator.next (&lt;anonymous&gt;)
383
384
  at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)