@datagrok/bio 2.1.9 → 2.1.10

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Files changed (6) hide show
  1. package/detectors.js +8 -9
  2. package/dist/package-test.js +5 -1
  3. package/files/tests/testSmilesShort.csv +11 -0
  4. package/package.json +1 -1
  5. package/src/tests/detectors-tests.ts +6 -0
  6. package/{test-Bio-62cc009524f3-820f73b0.html → test-Bio-62cc009524f3-e7a922ae.html} +105 -104
package/detectors.js CHANGED
@@ -138,7 +138,8 @@ class BioPackageDetectors extends DG.Package {
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  // TODO: Lazy calculations could be helpful for performance and convenient for expressing classification logic.
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  const statsAsChars = this.getStats(categoriesSample, 5,
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  this.getSplitterAsChars(SEQ_SAMPLE_LENGTH_LIMIT));
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- // if (Object.keys(statsAsChars.freq).length === 0) return;
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+ // Empty statsAsShars.freq alphabet means no strings of enough length presented in the data
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+ if (Object.keys(statsAsChars.freq).length === 0) return;
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  const decoy = this.detectAlphabet(statsAsChars.freq, decoyAlphabets, null);
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  if (decoy != ALPHABET.UN) return null;
@@ -153,15 +154,13 @@ class BioPackageDetectors extends DG.Package {
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  if (separator) col.setTag(UnitsHandler.TAGS.separator, separator);
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  if (statsAsChars.sameLength) {
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- if (Object.keys(statsAsChars.freq).length > 0) { // require non empty alphabet
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- const stats = this.getStats(categoriesSample, 5, splitter);
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- const alphabet = this.detectAlphabet(stats.freq, candidateAlphabets, '-');
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- if (alphabet === ALPHABET.UN) return null;
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+ const stats = this.getStats(categoriesSample, 5, splitter);
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+ const alphabet = this.detectAlphabet(stats.freq, candidateAlphabets, '-');
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+ if (alphabet === ALPHABET.UN) return null;
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- col.setTag(UnitsHandler.TAGS.aligned, ALIGNMENT.SEQ_MSA);
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- col.setTag(UnitsHandler.TAGS.alphabet, alphabet);
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- return DG.SEMTYPE.MACROMOLECULE;
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- }
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+ col.setTag(UnitsHandler.TAGS.aligned, ALIGNMENT.SEQ_MSA);
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+ col.setTag(UnitsHandler.TAGS.alphabet, alphabet);
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+ return DG.SEMTYPE.MACROMOLECULE;
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  } else {
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  const stats = this.getStats(categoriesSample, 5, splitter);
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  // Empty monomer alphabet is not allowed