@datagrok/bio 2.1.8 → 2.1.10

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (8) hide show
  1. package/detectors.js +8 -9
  2. package/dist/package-test.js +5 -3
  3. package/dist/package.js +1 -3
  4. package/files/tests/testSmilesShort.csv +11 -0
  5. package/package.json +1 -1
  6. package/src/package.ts +0 -3
  7. package/src/tests/detectors-tests.ts +6 -0
  8. package/{test-Bio-62cc009524f3-9c526574.html → test-Bio-62cc009524f3-e7a922ae.html} +99 -98
package/files/tests/testSmilesShort.csv ADDED
@@ -0,0 +1,11 @@
1
+ SMILES
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+ NO
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+ NO
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+ NO
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+ NO
6
+ NO
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+ NO
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+ NO
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+ NO
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+ NO
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+ NO
package/package.json CHANGED
@@ -5,7 +5,7 @@
5
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  "name": "Leonid Stolbov",
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  "email": "lstolbov@datagrok.ai"
7
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  },
8
- "version": "2.1.8",
8
+ "version": "2.1.10",
9
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  "description": "Bio is a [package](https://datagrok.ai/help/develop/develop#packages) for the [Datagrok](https://datagrok.ai) platform",
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  "repository": {
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  "type": "git",
package/src/package.ts CHANGED
@@ -588,9 +588,6 @@ export async function testDetectMacromolecule(path: string): Promise<DG.DataFram
588
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  //tags: panel, bio
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  //input: column col {semType: Macromolecule}
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  export function splitToMonomers(col: DG.Column<string>): void {
591
- if (!col.getTag(bio_TAGS.aligned).includes(C.MSA))
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- return grok.shell.error('Splitting is applicable only for aligned sequences');
593
-
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  const tempDf = splitAlignedSequences(col);
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  const originalDf = col.dataFrame;
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  for (const tempCol of tempDf.columns) {
package/src/tests/detectors-tests.ts CHANGED
@@ -132,6 +132,7 @@ MWRSWY-CKHP
132
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  testIdCsv = 'testIdCsv',
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  testSmilesCsv = 'testSmilesCsv',
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  testSmiles2Csv = 'testSmiles2Csv',
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+ testSmilesShort = 'testSmilesShort',
135
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  testCerealCsv = 'testCerealCsv',
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  testActivityCliffsCsv = 'testActivityCliffsCsv',
137
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  testSpgi100 = 'testSpgi100',
@@ -154,6 +155,7 @@ MWRSWY-CKHP
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  [Samples.testIdCsv]: 'System:AppData/Bio/tests/testId.csv',
155
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  [Samples.testSmilesCsv]: 'System:AppData/Bio/tests/testSmiles.csv',
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  [Samples.testSmiles2Csv]: 'System:AppData/Bio/tests/testSmiles2.csv',
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+ [Samples.testSmilesShort]: 'System:AppData/Bio/tests/testSmilesShort.csv',
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  [Samples.testActivityCliffsCsv]: 'System:AppData/Bio/tests/testActivityCliffs.csv', // smiles
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  [Samples.testCerealCsv]: 'System:AppData/Bio/tests/testCereal.csv',
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  [Samples.testSpgi100]: 'System:AppData/Bio/tests/testSpgi100.csv',
@@ -345,6 +347,10 @@ MWRSWY-CKHP
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  await _testNeg(readSamples(Samples.testSmiles2Csv), 'SMILES');
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  });
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+ test('samplesTestSmilesShortNegativeSmiles', async () => {
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+ await _testNeg(readSamples(Samples.testSmilesShort), 'SMILES');
352
+ });
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+
348
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  test('samplesTestActivityCliffsNegativeSmiles', async () => {
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  await _testNeg(readSamples(Samples.testActivityCliffsCsv), 'smiles');
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  });
package/{test-Bio-62cc009524f3-9c526574.html → test-Bio-62cc009524f3-e7a922ae.html} RENAMED
@@ -1,4 +1,4 @@
1
- <html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=62cc009524f3. Commit 9c526574.</title><style type="text/css">html,
1
+ <html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=62cc009524f3. Commit e7a922ae.</title><style type="text/css">html,
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  body {
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  font-family: Arial, Helvetica, sans-serif;
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  font-size: 1rem;
@@ -229,7 +229,7 @@ header {
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  font-size: 1rem;
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  padding: 0 0.5rem;
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  }
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- </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=62cc009524f3. Commit 9c526574.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-11-18 19:11:24</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">54.487s</div></div><div class="suite-tests"><div class="test-result passed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">passed</div><div class="test-duration">38.273s</div></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
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+ </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=62cc009524f3. Commit e7a922ae.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-11-22 08:51:16</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">39.691s</div></div><div class="suite-tests"><div class="test-result passed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">passed</div><div class="test-duration">27.533s</div></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
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  at Generator.next (&lt;anonymous&gt;)
234
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  at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:28:58)
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  at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Using web root: http://localhost:8080</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:40:11
@@ -243,102 +243,103 @@ header {
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  at Generator.next (&lt;anonymous&gt;)
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  at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
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  at runMicrotasks (&lt;anonymous&gt;)
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- at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Test result : Success : 1 : Bio.Palettes.testPaletteN : OK
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- Test result : Success : 0 : Bio.Palettes.testPaletteAA : OK
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+ at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Test result : Success : 0 : Bio.Palettes.testPaletteN : OK
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+ Test result : Success : 1 : Bio.Palettes.testPaletteAA : OK
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  Test result : Success : 0 : Bio.Palettes.testPalettePtMe : OK
249
- Test result : Success : 281 : Bio.detectors.NegativeEmpty : OK
250
- Test result : Success : 94 : Bio.detectors.Negative1 : OK
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- Test result : Success : 52 : Bio.detectors.Negative2 : OK
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- Test result : Success : 27 : Bio.detectors.Negative3 : OK
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- Test result : Success : 641 : Bio.detectors.NegativeSmiles : OK
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- Test result : Success : 71 : Bio.detectors.Dna1 : OK
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- Test result : Success : 48 : Bio.detectors.Rna1 : OK
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- Test result : Success : 51 : Bio.detectors.AA1 : OK
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- Test result : Success : 58 : Bio.detectors.MsaDna1 : OK
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- Test result : Success : 49 : Bio.detectors.MsaAA1 : OK
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- Test result : Success : 51 : Bio.detectors.SepDna : OK
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- Test result : Success : 37 : Bio.detectors.SepRna : OK
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- Test result : Success : 46 : Bio.detectors.SepPt : OK
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- Test result : Success : 29 : Bio.detectors.SepUn1 : OK
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- Test result : Success : 27 : Bio.detectors.SepUn2 : OK
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- Test result : Success : 56 : Bio.detectors.SepMsaN1 : OK
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- Test result : Success : 775 : Bio.detectors.SamplesFastaCsvPt : OK
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- Test result : Success : 24 : Bio.detectors.SamplesFastaCsvNegativeEntry : OK
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+ Test result : Success : 97 : Bio.detectors.NegativeEmpty : OK
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+ Test result : Success : 24 : Bio.detectors.Negative1 : OK
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+ Test result : Success : 17 : Bio.detectors.Negative2 : OK
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+ Test result : Success : 54 : Bio.detectors.Negative3 : OK
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+ Test result : Success : 449 : Bio.detectors.NegativeSmiles : OK
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+ Test result : Success : 48 : Bio.detectors.Dna1 : OK
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+ Test result : Success : 34 : Bio.detectors.Rna1 : OK
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+ Test result : Success : 23 : Bio.detectors.AA1 : OK
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+ Test result : Success : 39 : Bio.detectors.MsaDna1 : OK
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+ Test result : Success : 18 : Bio.detectors.MsaAA1 : OK
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+ Test result : Success : 37 : Bio.detectors.SepDna : OK
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+ Test result : Success : 21 : Bio.detectors.SepRna : OK
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+ Test result : Success : 24 : Bio.detectors.SepPt : OK
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+ Test result : Success : 26 : Bio.detectors.SepUn1 : OK
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+ Test result : Success : 14 : Bio.detectors.SepUn2 : OK
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+ Test result : Success : 16 : Bio.detectors.SepMsaN1 : OK
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+ Test result : Success : 474 : Bio.detectors.SamplesFastaCsvPt : OK
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+ Test result : Success : 23 : Bio.detectors.SamplesFastaCsvNegativeEntry : OK
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  Test result : Success : 6 : Bio.detectors.SamplesFastaCsvNegativeLength : OK
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- Test result : Success : 49 : Bio.detectors.SamplesFastaCsvNegativeUniProtKB : OK
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- Test result : Success : 394 : Bio.detectors.SamplesFastaFastaPt : OK
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- Test result : Success : 1344 : Bio.detectors.samplesPeptidesComplexNegativeID : OK
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- Test result : Success : 40 : Bio.detectors.SamplesPeptidesComplexNegativeMeasured : OK
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- Test result : Success : 32 : Bio.detectors.SamplesPeptidesComplexNegativeValue : OK
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- Test result : Success : 338 : Bio.detectors.samplesMsaComplexUn : OK
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- Test result : Success : 16 : Bio.detectors.samplesMsaComplexNegativeActivity : OK
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- Test result : Success : 302 : Bio.detectors.samplesIdCsvNegativeID : OK
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- Test result : Success : 262 : Bio.detectors.samplesSarSmallCsvNegativeSmiles : OK
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- Test result : Success : 250 : Bio.detectors.samplesHelmCsvHELM : OK
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- Test result : Success : 21 : Bio.detectors.samplesHelmCsvNegativeActivity : OK
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- Test result : Success : 223 : Bio.detectors.samplesTestHelmNegativeID : OK
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- Test result : Success : 32 : Bio.detectors.samplesTestHelmNegativeTestType : OK
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- Test result : Success : 26 : Bio.detectors.samplesTestHelmPositiveHelmString : OK
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- Test result : Success : 16 : Bio.detectors.samplesTestHelmNegativeValid : OK
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- Test result : Success : 18 : Bio.detectors.samplesTestHelmNegativeMolWeight : OK
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- Test result : Success : 5 : Bio.detectors.samplesTestHelmNegativeMolFormula : OK
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- Test result : Success : 15 : Bio.detectors.samplesTestHelmNegativeSmiles : OK
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- Test result : Success : 787 : Bio.detectors.samplesTestDemogNegativeAll : OK
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- Test result : Success : 330 : Bio.detectors.samplesTestSmiles2NegativeSmiles : OK
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- Test result : Success : 155 : Bio.detectors.samplesTestActivityCliffsNegativeSmiles : OK
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- Test result : Success : 153 : Bio.detectors.samplesFastaPtPosSequence : OK
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- Test result : Success : 128 : Bio.detectors.samplesTestCerealNegativeCerealName : OK
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- Test result : Success : 236 : Bio.detectors.samplesTestSpgi100NegativeStereoCategory : OK
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+ Test result : Success : 22 : Bio.detectors.SamplesFastaCsvNegativeUniProtKB : OK
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+ Test result : Success : 275 : Bio.detectors.SamplesFastaFastaPt : OK
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+ Test result : Success : 767 : Bio.detectors.samplesPeptidesComplexNegativeID : OK
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+ Test result : Success : 19 : Bio.detectors.SamplesPeptidesComplexNegativeMeasured : OK
272
+ Test result : Success : 10 : Bio.detectors.SamplesPeptidesComplexNegativeValue : OK
273
+ Test result : Success : 186 : Bio.detectors.samplesMsaComplexUn : OK
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+ Test result : Success : 6 : Bio.detectors.samplesMsaComplexNegativeActivity : OK
275
+ Test result : Success : 129 : Bio.detectors.samplesIdCsvNegativeID : OK
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+ Test result : Success : 112 : Bio.detectors.samplesSarSmallCsvNegativeSmiles : OK
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+ Test result : Success : 126 : Bio.detectors.samplesHelmCsvHELM : OK
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+ Test result : Success : 4 : Bio.detectors.samplesHelmCsvNegativeActivity : OK
279
+ Test result : Success : 105 : Bio.detectors.samplesTestHelmNegativeID : OK
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+ Test result : Success : 5 : Bio.detectors.samplesTestHelmNegativeTestType : OK
281
+ Test result : Success : 5 : Bio.detectors.samplesTestHelmPositiveHelmString : OK
282
+ Test result : Success : 4 : Bio.detectors.samplesTestHelmNegativeValid : OK
283
+ Test result : Success : 5 : Bio.detectors.samplesTestHelmNegativeMolWeight : OK
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+ Test result : Success : 4 : Bio.detectors.samplesTestHelmNegativeMolFormula : OK
285
+ Test result : Success : 5 : Bio.detectors.samplesTestHelmNegativeSmiles : OK
286
+ Test result : Success : 451 : Bio.detectors.samplesTestDemogNegativeAll : OK
287
+ Test result : Success : 241 : Bio.detectors.samplesTestSmiles2NegativeSmiles : OK
288
+ Test result : Success : 106 : Bio.detectors.samplesTestSmilesShortNegativeSmiles : OK
289
+ Test result : Success : 119 : Bio.detectors.samplesTestActivityCliffsNegativeSmiles : OK
290
+ Test result : Success : 118 : Bio.detectors.samplesFastaPtPosSequence : OK
291
+ Test result : Success : 114 : Bio.detectors.samplesTestCerealNegativeCerealName : OK
292
+ Test result : Success : 194 : Bio.detectors.samplesTestSpgi100NegativeStereoCategory : OK
292
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  Test result : Success : 8 : Bio.detectors.samplesTestSpgi100NegativeScaffoldNames : OK
293
- Test result : Success : 20 : Bio.detectors.samplesTestSpgi100NegativePrimaryScaffoldName : OK
294
- Test result : Success : 7 : Bio.detectors.samplesTestSpgi100NegativeSampleName : OK
295
- Test result : Success : 163 : Bio.detectors.samplesTestUnichemSourcesNegativeSrcUrl : OK
296
- Test result : Success : 7 : Bio.detectors.samplesTestUnichemSourcesNegativeBaseIdUrl : OK
297
- Test result : Success : 165 : Bio.detectors.samplesTestDmvOfficesNegativeOfficeName : OK
298
- Test result : Success : 10 : Bio.detectors.samplesTestDmvOfficesNegativeCity : OK
299
- Test result : Success : 165 : Bio.detectors.samplesTestAlertCollectionNegativeSmarts : OK
300
- Test result : Success : 141 : Bio.detectors.samplesTestSpgiNegativeVals : OK
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- Test result : Success : 6 : Bio.detectorsBenchmark.separatorDnaShorts50Few50 : OK
302
- Test result : Success : 10420 : Bio.detectorsBenchmark.separatorDnaShorts50Many1E6 : OK
303
- Test result : Success : 2371 : Bio.MSA.isCorrect : OK
304
- Test result : Success : 121 : Bio.MSA.isCorrectLong : OK
305
- Test result : Success : 1444 : Bio.sequenceSpace.sequenceSpaceOpens : OK
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- Test result : Success : 590 : Bio.sequenceSpace.sequenceSpaceWithEmptyRows : OK
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- Test result : Success : 1021 : Bio.activityCliffs.activityCliffsOpens : OK
308
- Test result : Success : 1073 : Bio.activityCliffs.activityCliffsWithEmptyRows : OK
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- Test result : Success : 2 : Bio.splitters.fastaMulti : OK
294
+ Test result : Success : 5 : Bio.detectors.samplesTestSpgi100NegativePrimaryScaffoldName : OK
295
+ Test result : Success : 5 : Bio.detectors.samplesTestSpgi100NegativeSampleName : OK
296
+ Test result : Success : 108 : Bio.detectors.samplesTestUnichemSourcesNegativeSrcUrl : OK
297
+ Test result : Success : 5 : Bio.detectors.samplesTestUnichemSourcesNegativeBaseIdUrl : OK
298
+ Test result : Success : 125 : Bio.detectors.samplesTestDmvOfficesNegativeOfficeName : OK
299
+ Test result : Success : 8 : Bio.detectors.samplesTestDmvOfficesNegativeCity : OK
300
+ Test result : Success : 130 : Bio.detectors.samplesTestAlertCollectionNegativeSmarts : OK
301
+ Test result : Success : 101 : Bio.detectors.samplesTestSpgiNegativeVals : OK
302
+ Test result : Success : 4 : Bio.detectorsBenchmark.separatorDnaShorts50Few50 : OK
303
+ Test result : Success : 8313 : Bio.detectorsBenchmark.separatorDnaShorts50Many1E6 : OK
304
+ Test result : Success : 985 : Bio.MSA.isCorrect : OK
305
+ Test result : Success : 102 : Bio.MSA.isCorrectLong : OK
306
+ Test result : Success : 934 : Bio.sequenceSpace.sequenceSpaceOpens : OK
307
+ Test result : Success : 441 : Bio.sequenceSpace.sequenceSpaceWithEmptyRows : OK
308
+ Test result : Success : 682 : Bio.activityCliffs.activityCliffsOpens : OK
309
+ Test result : Success : 763 : Bio.activityCliffs.activityCliffsWithEmptyRows : OK
310
+ Test result : Success : 1 : Bio.splitters.fastaMulti : OK
310
311
  Test result : Success : 1 : Bio.splitters.helm1 : OK
311
312
  Test result : Success : 0 : Bio.splitters.helm2 : OK
312
- Test result : Success : 0 : Bio.splitters.helm3-multichar : OK
313
- Test result : Success : 1 : Bio.splitters.testHelm1 : OK
313
+ Test result : Success : 1 : Bio.splitters.helm3-multichar : OK
314
+ Test result : Success : 0 : Bio.splitters.testHelm1 : OK
314
315
  Test result : Success : 0 : Bio.splitters.testHelm2 : OK
315
- Test result : Success : 1 : Bio.splitters.testHelm3 : OK
316
- Test result : Success : 360 : Bio.splitters.splitToMonomers : OK
316
+ Test result : Success : 0 : Bio.splitters.testHelm3 : OK
317
+ Test result : Success : 259 : Bio.splitters.splitToMonomers : OK
317
318
  Test result : Success : 2 : Bio.splitters.getHelmMonomers : OK
318
- Test result : Success : 96 : Bio.renderers.long sequence performance : OK
319
- Test result : Success : 975 : Bio.renderers.many sequence performance : OK
320
- Test result : Success : 422 : Bio.renderers.rendererMacromoleculeFasta : OK
321
- Test result : Success : 253 : Bio.renderers.rendererMacromoleculeSeparator : OK
322
- Test result : Success : 207 : Bio.renderers.rendererMacromoleculeDifference : OK
323
- Test result : Success : 695 : Bio.renderers.afterMsa : OK
324
- Test result : Success : 672 : Bio.renderers.afterConvert : OK
325
- Test result : Success : 212 : Bio.renderers.selectRendererBySemType : OK
326
- Test result : Success : 7 : Bio.converters.testFastaPtToSeparator : OK
327
- Test result : Success : 4 : Bio.converters.testFastaDnaToSeparator : OK
328
- Test result : Success : 12 : Bio.converters.testFastaRnaToSeparator : OK
329
- Test result : Success : 5 : Bio.converters.testFastaGapsToSeparator : OK
330
- Test result : Success : 3 : Bio.converters.testFastaPtToHelm : OK
319
+ Test result : Success : 63 : Bio.renderers.long sequence performance : OK
320
+ Test result : Success : 800 : Bio.renderers.many sequence performance : OK
321
+ Test result : Success : 278 : Bio.renderers.rendererMacromoleculeFasta : OK
322
+ Test result : Success : 196 : Bio.renderers.rendererMacromoleculeSeparator : OK
323
+ Test result : Success : 67 : Bio.renderers.rendererMacromoleculeDifference : OK
324
+ Test result : Success : 364 : Bio.renderers.afterMsa : OK
325
+ Test result : Success : 262 : Bio.renderers.afterConvert : OK
326
+ Test result : Success : 170 : Bio.renderers.selectRendererBySemType : OK
327
+ Test result : Success : 5 : Bio.converters.testFastaPtToSeparator : OK
328
+ Test result : Success : 10 : Bio.converters.testFastaDnaToSeparator : OK
329
+ Test result : Success : 3 : Bio.converters.testFastaRnaToSeparator : OK
330
+ Test result : Success : 3 : Bio.converters.testFastaGapsToSeparator : OK
331
+ Test result : Success : 2 : Bio.converters.testFastaPtToHelm : OK
331
332
  Test result : Success : 2 : Bio.converters.testFastaDnaToHelm : OK
332
333
  Test result : Success : 2 : Bio.converters.testFastaRnaToHelm : OK
333
334
  Test result : Success : 2 : Bio.converters.testFastaGapsToHelm : OK
334
335
  Test result : Success : 1 : Bio.converters.testSeparatorPtToFasta : OK
335
- Test result : Success : 1 : Bio.converters.testSeparatorDnaToFasta : OK
336
- Test result : Success : 2 : Bio.converters.testSeparatorRnaToFasta : OK
336
+ Test result : Success : 0 : Bio.converters.testSeparatorDnaToFasta : OK
337
+ Test result : Success : 1 : Bio.converters.testSeparatorRnaToFasta : OK
337
338
  Test result : Success : 0 : Bio.converters.testSeparatorGapsToFasta : OK
338
339
  Test result : Success : 0 : Bio.converters.testSeparatorPtToHelm : OK
339
- Test result : Success : 1 : Bio.converters.testSeparatorDnaToHelm : OK
340
+ Test result : Success : 0 : Bio.converters.testSeparatorDnaToHelm : OK
340
341
  Test result : Success : 0 : Bio.converters.testSeparatorRnaToHelm : OK
341
- Test result : Success : 1 : Bio.converters.testSeparatorGapsToHelm : OK
342
+ Test result : Success : 0 : Bio.converters.testSeparatorGapsToHelm : OK
342
343
  Test result : Success : 1 : Bio.converters.testHelmDnaToFasta : OK
343
344
  Test result : Success : 0 : Bio.converters.testHelmRnaToFasta : OK
344
345
  Test result : Success : 1 : Bio.converters.testHelmPtToFasta : OK
@@ -348,36 +349,36 @@ Test result : Success : 0 : Bio.converters.testHelmPtToSeparator : OK
348
349
  Test result : Success : 2 : Bio.converters.testHelmLoneRibose : OK
349
350
  Test result : Success : 2 : Bio.converters.testHelmLoneDeoxyribose : OK
350
351
  Test result : Success : 2 : Bio.converters.testHelmLonePhosphorus : OK
351
- Test result : Success : 0 : Bio.fastaFileHandler.testNormalFormatting : OK
352
+ Test result : Success : 1 : Bio.fastaFileHandler.testNormalFormatting : OK
352
353
  Test result : Success : 0 : Bio.fastaFileHandler.testExtraSpaces : OK
353
354
  Test result : Success : 0 : Bio.fastaFileHandler.testExtraNewlines : OK
354
355
  Test result : Success : 0 : Bio.fastaExport.wrapSequenceSingle : OK
355
356
  Test result : Success : 0 : Bio.fastaExport.wrapSequenceMulti : OK
356
- Test result : Success : 1 : Bio.fastaExport.saveAsFastaTest1 : OK
357
+ Test result : Success : 2 : Bio.fastaExport.saveAsFastaTest1 : OK
357
358
  Test result : Success : 1 : Bio.fastaExport.saveAsFastaTest2 : OK
358
359
  Test result : Success : 1 : Bio.bio.testGetStatsHelm1 : OK
359
360
  Test result : Success : 1 : Bio.bio.testGetStatsN1 : OK
360
361
  Test result : Success : 0 : Bio.bio.testGetAlphabetSimilarity : OK
361
- Test result : Success : 2 : Bio.bio.testPickupPaletteN1 : OK
362
+ Test result : Success : 1 : Bio.bio.testPickupPaletteN1 : OK
362
363
  Test result : Success : 1 : Bio.bio.testPickupPaletteN1e : OK
363
364
  Test result : Success : 1 : Bio.bio.testPickupPaletteAA1 : OK
364
365
  Test result : Success : 1 : Bio.bio.testPickupPaletteX : OK
365
- Test result : Success : 1 : Bio.WebLogo.monomerToShort.longMonomerSingle : OK
366
+ Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerSingle : OK
366
367
  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerShort : OK
367
- Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerLong56 : OK
368
+ Test result : Success : 1 : Bio.WebLogo.monomerToShort.longMonomerLong56 : OK
368
369
  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerComplexFirstPartShort : OK
369
370
  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerComplexFirstPartLong56 : OK
370
- Test result : Success : 136 : Bio.WebLogo-positions.allPositions : OK
371
- Test result : Success : 132 : Bio.WebLogo-positions.positions with shrinkEmptyTail option true (filterd) : OK
372
- Test result : Success : 273 : Bio.WebLogo-positions.positions with skipEmptyPositions option : OK
371
+ Test result : Success : 97 : Bio.WebLogo-positions.allPositions : OK
372
+ Test result : Success : 85 : Bio.WebLogo-positions.positions with shrinkEmptyTail option true (filterd) : OK
373
+ Test result : Success : 78 : Bio.WebLogo-positions.positions with skipEmptyPositions option : OK
373
374
  Test result : Success : 3 : Bio.checkInputColumn.testMsaPos : OK
374
- Test result : Success : 2 : Bio.checkInputColumn.testMsaNegHelm : OK
375
+ Test result : Success : 1 : Bio.checkInputColumn.testMsaNegHelm : OK
375
376
  Test result : Success : 1 : Bio.checkInputColumn.testMsaNegUN : OK
376
- Test result : Success : 1 : Bio.checkInputColumn.testGetActionFunctionMeta : OK
377
- Test result : Success : 462 : Bio.similarity/diversity.similaritySearchViewer : OK
378
- Test result : Success : 362 : Bio.similarity/diversity.diversitySearchViewer : OK
379
- Test result : Success : 253 : Bio.substructureFilters.fasta : OK
380
- Test result : Success : 436 : Bio.substructureFilters.separator : OK
377
+ Test result : Success : 0 : Bio.checkInputColumn.testGetActionFunctionMeta : OK
378
+ Test result : Success : 378 : Bio.similarity/diversity.similaritySearchViewer : OK
379
+ Test result : Success : 239 : Bio.similarity/diversity.diversitySearchViewer : OK
380
+ Test result : Success : 211 : Bio.substructureFilters.fasta : OK
381
+ Test result : Success : 399 : Bio.substructureFilters.separator : OK
381
382
  </pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:74:11
382
383
  at Generator.next (&lt;anonymous&gt;)
383
384
  at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)