@datagrok/bio 2.1.7 → 2.1.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (6) hide show
  1. package/detectors.js +1 -1
  2. package/dist/package-test.js +5 -1
  3. package/files/tests/SPGI-derived.csv +320 -0
  4. package/package.json +1 -1
  5. package/src/tests/detectors-tests.ts +19 -1
  6. package/{test-Bio-62cc009524f3-6c978eb5.html → test-Bio-62cc009524f3-9c526574.html} +100 -99
package/files/tests/SPGI-derived.csv ADDED
@@ -0,0 +1,320 @@
1
+ vals
2
+ "6.3
3
+
4
+ 43.0
5
+
6
+
7
+ 561.0
8
+
9
+
10
+ 24.0"
11
+ "80.0
12
+
13
+ 421.0
14
+
15
+
16
+ 4.3
17
+ 6.6"
18
+ "231.0
19
+
20
+
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+ 225.0
22
+
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+
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+
25
+
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+
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+
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+ 43.0
29
+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+ 3.9"
43
+ "348.0
44
+
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+
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+
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+ 26.0"
48
+ "40.2
49
+
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+
51
+ 364.0"
52
+ "25.0
53
+
54
+
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+
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+ 215.0
57
+
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+
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+
60
+
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+ 69.0
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+
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+
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+ 3.2
65
+ 6.9"
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+ "12.0
67
+
68
+
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+
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+
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+
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+ 1392.0
73
+
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+
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+
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+
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+
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+
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+
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+ 6.0"
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+ "367.0
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+ 284.0"
107
+ "118.0
108
+ 79.0
109
+
110
+
111
+
112
+ 161.0
113
+
114
+
115
+ 3.0
116
+
117
+
118
+
119
+ 24.0
120
+
121
+
122
+
123
+ 8.0"
124
+ "149.0
125
+
126
+
127
+
128
+
129
+
130
+
131
+
132
+ 95.7
133
+
134
+
135
+ 564.0
136
+ 153.0"
137
+ "126.0
138
+
139
+
140
+
141
+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+ 89.7"
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+ "294.0
162
+ 60.0
163
+
164
+
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+
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+
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+
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+
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+
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+
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+
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+
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+ 594.0
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+
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+
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+
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+ 190.0
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+
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+
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+
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+ 533.0
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+
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+
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+
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+
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+
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+ 671.0
188
+ 304.0"
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+ "2.0
190
+
191
+
192
+
193
+
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+
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+
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+
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+
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+
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+
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+ 24.0
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+ 89.0
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+
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+
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+
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+
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+ 2443.0
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+
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+
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+
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+
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+
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+ 108.0
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+ 119.0"
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+ "240.0
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+
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+
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+
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+ 2.0
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+
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+
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+
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+
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+
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+ 36.0
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+
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+
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+ 8.0"
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+ "223.0
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+
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+
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+
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+ 372.0
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+ 93.0
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+
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+
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+
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+
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+ 30.0"
251
+ "30.0
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+
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+
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+
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+
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+ 5955.0
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+ 137.0
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+
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+
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+
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+ 2.0
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+
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+
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+
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+
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+
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+
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+
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+
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+ 26.0"
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+ "37.5
273
+
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+
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+
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+ 166.0"
277
+ "135.0
278
+
279
+ 17.0"
280
+ "1173.0
281
+ 539.0"
282
+ "2860.0
283
+
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+
285
+ 3940.0"
286
+ "763.0
287
+ 1547.0"
288
+ "139.0
289
+
290
+ 426.0"
291
+ "307.0
292
+
293
+
294
+ 86.3"
295
+ 865
296
+ 605
297
+ 226
298
+ 8
299
+ 231
300
+ "54.0
301
+
302
+ 43.3
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+
304
+
305
+
306
+
307
+
308
+
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+
310
+
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+
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+ 90.9
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+
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+
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+
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+ 687.0"
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+ "4.0
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+
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+
320
+ 9.0"
package/package.json CHANGED
@@ -5,7 +5,7 @@
5
5
  "name": "Leonid Stolbov",
6
6
  "email": "lstolbov@datagrok.ai"
7
7
  },
8
- "version": "2.1.7",
8
+ "version": "2.1.8",
9
9
  "description": "Bio is a [package](https://datagrok.ai/help/develop/develop#packages) for the [Datagrok](https://datagrok.ai) platform",
10
10
  "repository": {
11
11
  "type": "git",
package/src/tests/detectors-tests.ts CHANGED
@@ -7,6 +7,17 @@ import {after, before, category, test, expect, expectObject} from '@datagrok-lib
7
7
 
8
8
  import {importFasta} from '../package';
9
9
 
10
+ /*
11
+ // snippet to list df columns of semType='Macromolecule' (false positive)
12
+ const df = grok.shell.tableByName('SPGI');
13
+ for (let i = 0; i < df.columns.length; i++) {
14
+ const col = df.columns.byIndex(i);
15
+ if (col.semType == 'Macromolecule') {
16
+ console.log( i + ' - ' + col.name + ' - ' + col.semType);
17
+ }
18
+ }
19
+ */
20
+
10
21
  type DfReaderFunc = () => Promise<DG.DataFrame>;
11
22
 
12
23
  category('detectors', () => {
@@ -127,6 +138,7 @@ MWRSWY-CKHP
127
138
  testUnichemSources = 'testUnichemSources',
128
139
  testDmvOffices = 'testDmvOffices',
129
140
  testAlertCollection = 'testAlertCollection',
141
+ testSpgi = 'testSpgi',
130
142
  }
131
143
 
132
144
  const samples: { [key: string]: string } = {
@@ -148,6 +160,7 @@ MWRSWY-CKHP
148
160
  [Samples.testUnichemSources]: 'System:AppData/Bio/tests/testUnichemSources.csv',
149
161
  [Samples.testDmvOffices]: 'System:AppData/Bio/tests/testDmvOffices.csv',
150
162
  [Samples.testAlertCollection]: 'System:AppData/Bio/tests/testAlertCollection.csv',
163
+ [Samples.testSpgi]: 'System:AppData/Bio/tests/SPGI-derived.csv',
151
164
  };
152
165
 
153
166
  const _samplesDfs: { [key: string]: Promise<DG.DataFrame> } = {};
@@ -337,7 +350,8 @@ MWRSWY-CKHP
337
350
  });
338
351
 
339
352
  test('samplesFastaPtPosSequence', async () => {
340
- await _testPos(readSamples(Samples.fastaPtCsv), 'sequence', bio.NOTATION.FASTA, bio.ALIGNMENT.SEQ, bio.ALPHABET.PT, 20, false);
353
+ await _testPos(readSamples(Samples.fastaPtCsv), 'sequence',
354
+ bio.NOTATION.FASTA, bio.ALIGNMENT.SEQ, bio.ALPHABET.PT, 20, false);
341
355
  });
342
356
 
343
357
  test('samplesTestCerealNegativeCerealName', async () => {
@@ -374,6 +388,10 @@ MWRSWY-CKHP
374
388
  test('samplesTestAlertCollectionNegativeSmarts', async () => {
375
389
  await _testNeg(readSamples(Samples.testAlertCollection), 'smarts');
376
390
  });
391
+
392
+ test('samplesTestSpgiNegativeVals', async () => {
393
+ await _testNeg(readSamples(Samples.testSpgi), 'vals');
394
+ });
377
395
  });
378
396
 
379
397
  export async function _testNeg(readDf: DfReaderFunc, colName: string) {
package/{test-Bio-62cc009524f3-6c978eb5.html → test-Bio-62cc009524f3-9c526574.html} RENAMED
@@ -1,4 +1,4 @@
1
- <html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=62cc009524f3. Commit 6c978eb5.</title><style type="text/css">html,
1
+ <html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=62cc009524f3. Commit 9c526574.</title><style type="text/css">html,
2
2
  body {
3
3
  font-family: Arial, Helvetica, sans-serif;
4
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  font-size: 1rem;
@@ -229,7 +229,7 @@ header {
229
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  font-size: 1rem;
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  padding: 0 0.5rem;
231
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  }
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- </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=62cc009524f3. Commit 6c978eb5.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-11-17 12:14:47</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">41.993s</div></div><div class="suite-tests"><div class="test-result passed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">passed</div><div class="test-duration">30.068s</div></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
232
+ </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=62cc009524f3. Commit 9c526574.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-11-18 19:11:24</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">54.487s</div></div><div class="suite-tests"><div class="test-result passed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">passed</div><div class="test-duration">38.273s</div></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
233
233
  at Generator.next (&lt;anonymous&gt;)
234
234
  at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:28:58)
235
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  at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Using web root: http://localhost:8080</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:40:11
@@ -244,139 +244,140 @@ header {
244
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  at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
245
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  at runMicrotasks (&lt;anonymous&gt;)
246
246
  at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Test result : Success : 1 : Bio.Palettes.testPaletteN : OK
247
- Test result : Success : 13 : Bio.Palettes.testPaletteAA : OK
248
- Test result : Success : 1 : Bio.Palettes.testPalettePtMe : OK
249
- Test result : Success : 120 : Bio.detectors.NegativeEmpty : OK
250
- Test result : Success : 37 : Bio.detectors.Negative1 : OK
251
- Test result : Success : 48 : Bio.detectors.Negative2 : OK
252
- Test result : Success : 47 : Bio.detectors.Negative3 : OK
253
- Test result : Success : 451 : Bio.detectors.NegativeSmiles : OK
254
- Test result : Success : 32 : Bio.detectors.Dna1 : OK
255
- Test result : Success : 26 : Bio.detectors.Rna1 : OK
256
- Test result : Success : 25 : Bio.detectors.AA1 : OK
257
- Test result : Success : 20 : Bio.detectors.MsaDna1 : OK
258
- Test result : Success : 19 : Bio.detectors.MsaAA1 : OK
259
- Test result : Success : 10 : Bio.detectors.SepDna : OK
260
- Test result : Success : 22 : Bio.detectors.SepRna : OK
261
- Test result : Success : 25 : Bio.detectors.SepPt : OK
262
- Test result : Success : 12 : Bio.detectors.SepUn1 : OK
263
- Test result : Success : 18 : Bio.detectors.SepUn2 : OK
264
- Test result : Success : 30 : Bio.detectors.SepMsaN1 : OK
265
- Test result : Success : 459 : Bio.detectors.SamplesFastaCsvPt : OK
266
- Test result : Success : 23 : Bio.detectors.SamplesFastaCsvNegativeEntry : OK
247
+ Test result : Success : 0 : Bio.Palettes.testPaletteAA : OK
248
+ Test result : Success : 0 : Bio.Palettes.testPalettePtMe : OK
249
+ Test result : Success : 281 : Bio.detectors.NegativeEmpty : OK
250
+ Test result : Success : 94 : Bio.detectors.Negative1 : OK
251
+ Test result : Success : 52 : Bio.detectors.Negative2 : OK
252
+ Test result : Success : 27 : Bio.detectors.Negative3 : OK
253
+ Test result : Success : 641 : Bio.detectors.NegativeSmiles : OK
254
+ Test result : Success : 71 : Bio.detectors.Dna1 : OK
255
+ Test result : Success : 48 : Bio.detectors.Rna1 : OK
256
+ Test result : Success : 51 : Bio.detectors.AA1 : OK
257
+ Test result : Success : 58 : Bio.detectors.MsaDna1 : OK
258
+ Test result : Success : 49 : Bio.detectors.MsaAA1 : OK
259
+ Test result : Success : 51 : Bio.detectors.SepDna : OK
260
+ Test result : Success : 37 : Bio.detectors.SepRna : OK
261
+ Test result : Success : 46 : Bio.detectors.SepPt : OK
262
+ Test result : Success : 29 : Bio.detectors.SepUn1 : OK
263
+ Test result : Success : 27 : Bio.detectors.SepUn2 : OK
264
+ Test result : Success : 56 : Bio.detectors.SepMsaN1 : OK
265
+ Test result : Success : 775 : Bio.detectors.SamplesFastaCsvPt : OK
266
+ Test result : Success : 24 : Bio.detectors.SamplesFastaCsvNegativeEntry : OK
267
267
  Test result : Success : 6 : Bio.detectors.SamplesFastaCsvNegativeLength : OK
268
- Test result : Success : 35 : Bio.detectors.SamplesFastaCsvNegativeUniProtKB : OK
269
- Test result : Success : 426 : Bio.detectors.SamplesFastaFastaPt : OK
270
- Test result : Success : 1008 : Bio.detectors.samplesPeptidesComplexNegativeID : OK
271
- Test result : Success : 28 : Bio.detectors.SamplesPeptidesComplexNegativeMeasured : OK
272
- Test result : Success : 31 : Bio.detectors.SamplesPeptidesComplexNegativeValue : OK
273
- Test result : Success : 292 : Bio.detectors.samplesMsaComplexUn : OK
274
- Test result : Success : 19 : Bio.detectors.samplesMsaComplexNegativeActivity : OK
275
- Test result : Success : 239 : Bio.detectors.samplesIdCsvNegativeID : OK
276
- Test result : Success : 150 : Bio.detectors.samplesSarSmallCsvNegativeSmiles : OK
277
- Test result : Success : 192 : Bio.detectors.samplesHelmCsvHELM : OK
278
- Test result : Success : 14 : Bio.detectors.samplesHelmCsvNegativeActivity : OK
279
- Test result : Success : 155 : Bio.detectors.samplesTestHelmNegativeID : OK
280
- Test result : Success : 19 : Bio.detectors.samplesTestHelmNegativeTestType : OK
281
- Test result : Success : 21 : Bio.detectors.samplesTestHelmPositiveHelmString : OK
282
- Test result : Success : 24 : Bio.detectors.samplesTestHelmNegativeValid : OK
283
- Test result : Success : 16 : Bio.detectors.samplesTestHelmNegativeMolWeight : OK
284
- Test result : Success : 11 : Bio.detectors.samplesTestHelmNegativeMolFormula : OK
285
- Test result : Success : 17 : Bio.detectors.samplesTestHelmNegativeSmiles : OK
286
- Test result : Success : 927 : Bio.detectors.samplesTestDemogNegativeAll : OK
287
- Test result : Success : 260 : Bio.detectors.samplesTestSmiles2NegativeSmiles : OK
288
- Test result : Success : 144 : Bio.detectors.samplesTestActivityCliffsNegativeSmiles : OK
289
- Test result : Success : 118 : Bio.detectors.samplesFastaPtPosSequence : OK
290
- Test result : Success : 119 : Bio.detectors.samplesTestCerealNegativeCerealName : OK
291
- Test result : Success : 189 : Bio.detectors.samplesTestSpgi100NegativeStereoCategory : OK
292
- Test result : Success : 6 : Bio.detectors.samplesTestSpgi100NegativeScaffoldNames : OK
293
- Test result : Success : 8 : Bio.detectors.samplesTestSpgi100NegativePrimaryScaffoldName : OK
294
- Test result : Success : 5 : Bio.detectors.samplesTestSpgi100NegativeSampleName : OK
295
- Test result : Success : 122 : Bio.detectors.samplesTestUnichemSourcesNegativeSrcUrl : OK
296
- Test result : Success : 5 : Bio.detectors.samplesTestUnichemSourcesNegativeBaseIdUrl : OK
297
- Test result : Success : 125 : Bio.detectors.samplesTestDmvOfficesNegativeOfficeName : OK
268
+ Test result : Success : 49 : Bio.detectors.SamplesFastaCsvNegativeUniProtKB : OK
269
+ Test result : Success : 394 : Bio.detectors.SamplesFastaFastaPt : OK
270
+ Test result : Success : 1344 : Bio.detectors.samplesPeptidesComplexNegativeID : OK
271
+ Test result : Success : 40 : Bio.detectors.SamplesPeptidesComplexNegativeMeasured : OK
272
+ Test result : Success : 32 : Bio.detectors.SamplesPeptidesComplexNegativeValue : OK
273
+ Test result : Success : 338 : Bio.detectors.samplesMsaComplexUn : OK
274
+ Test result : Success : 16 : Bio.detectors.samplesMsaComplexNegativeActivity : OK
275
+ Test result : Success : 302 : Bio.detectors.samplesIdCsvNegativeID : OK
276
+ Test result : Success : 262 : Bio.detectors.samplesSarSmallCsvNegativeSmiles : OK
277
+ Test result : Success : 250 : Bio.detectors.samplesHelmCsvHELM : OK
278
+ Test result : Success : 21 : Bio.detectors.samplesHelmCsvNegativeActivity : OK
279
+ Test result : Success : 223 : Bio.detectors.samplesTestHelmNegativeID : OK
280
+ Test result : Success : 32 : Bio.detectors.samplesTestHelmNegativeTestType : OK
281
+ Test result : Success : 26 : Bio.detectors.samplesTestHelmPositiveHelmString : OK
282
+ Test result : Success : 16 : Bio.detectors.samplesTestHelmNegativeValid : OK
283
+ Test result : Success : 18 : Bio.detectors.samplesTestHelmNegativeMolWeight : OK
284
+ Test result : Success : 5 : Bio.detectors.samplesTestHelmNegativeMolFormula : OK
285
+ Test result : Success : 15 : Bio.detectors.samplesTestHelmNegativeSmiles : OK
286
+ Test result : Success : 787 : Bio.detectors.samplesTestDemogNegativeAll : OK
287
+ Test result : Success : 330 : Bio.detectors.samplesTestSmiles2NegativeSmiles : OK
288
+ Test result : Success : 155 : Bio.detectors.samplesTestActivityCliffsNegativeSmiles : OK
289
+ Test result : Success : 153 : Bio.detectors.samplesFastaPtPosSequence : OK
290
+ Test result : Success : 128 : Bio.detectors.samplesTestCerealNegativeCerealName : OK
291
+ Test result : Success : 236 : Bio.detectors.samplesTestSpgi100NegativeStereoCategory : OK
292
+ Test result : Success : 8 : Bio.detectors.samplesTestSpgi100NegativeScaffoldNames : OK
293
+ Test result : Success : 20 : Bio.detectors.samplesTestSpgi100NegativePrimaryScaffoldName : OK
294
+ Test result : Success : 7 : Bio.detectors.samplesTestSpgi100NegativeSampleName : OK
295
+ Test result : Success : 163 : Bio.detectors.samplesTestUnichemSourcesNegativeSrcUrl : OK
296
+ Test result : Success : 7 : Bio.detectors.samplesTestUnichemSourcesNegativeBaseIdUrl : OK
297
+ Test result : Success : 165 : Bio.detectors.samplesTestDmvOfficesNegativeOfficeName : OK
298
298
  Test result : Success : 10 : Bio.detectors.samplesTestDmvOfficesNegativeCity : OK
299
- Test result : Success : 140 : Bio.detectors.samplesTestAlertCollectionNegativeSmarts : OK
299
+ Test result : Success : 165 : Bio.detectors.samplesTestAlertCollectionNegativeSmarts : OK
300
+ Test result : Success : 141 : Bio.detectors.samplesTestSpgiNegativeVals : OK
300
301
  Test result : Success : 6 : Bio.detectorsBenchmark.separatorDnaShorts50Few50 : OK
301
- Test result : Success : 8636 : Bio.detectorsBenchmark.separatorDnaShorts50Many1E6 : OK
302
- Test result : Success : 1248 : Bio.MSA.isCorrect : OK
303
- Test result : Success : 114 : Bio.MSA.isCorrectLong : OK
304
- Test result : Success : 998 : Bio.sequenceSpace.sequenceSpaceOpens : OK
305
- Test result : Success : 462 : Bio.sequenceSpace.sequenceSpaceWithEmptyRows : OK
306
- Test result : Success : 749 : Bio.activityCliffs.activityCliffsOpens : OK
307
- Test result : Success : 824 : Bio.activityCliffs.activityCliffsWithEmptyRows : OK
308
- Test result : Success : 0 : Bio.splitters.fastaMulti : OK
302
+ Test result : Success : 10420 : Bio.detectorsBenchmark.separatorDnaShorts50Many1E6 : OK
303
+ Test result : Success : 2371 : Bio.MSA.isCorrect : OK
304
+ Test result : Success : 121 : Bio.MSA.isCorrectLong : OK
305
+ Test result : Success : 1444 : Bio.sequenceSpace.sequenceSpaceOpens : OK
306
+ Test result : Success : 590 : Bio.sequenceSpace.sequenceSpaceWithEmptyRows : OK
307
+ Test result : Success : 1021 : Bio.activityCliffs.activityCliffsOpens : OK
308
+ Test result : Success : 1073 : Bio.activityCliffs.activityCliffsWithEmptyRows : OK
309
+ Test result : Success : 2 : Bio.splitters.fastaMulti : OK
309
310
  Test result : Success : 1 : Bio.splitters.helm1 : OK
310
311
  Test result : Success : 0 : Bio.splitters.helm2 : OK
311
312
  Test result : Success : 0 : Bio.splitters.helm3-multichar : OK
312
- Test result : Success : 0 : Bio.splitters.testHelm1 : OK
313
- Test result : Success : 1 : Bio.splitters.testHelm2 : OK
314
- Test result : Success : 0 : Bio.splitters.testHelm3 : OK
315
- Test result : Success : 285 : Bio.splitters.splitToMonomers : OK
313
+ Test result : Success : 1 : Bio.splitters.testHelm1 : OK
314
+ Test result : Success : 0 : Bio.splitters.testHelm2 : OK
315
+ Test result : Success : 1 : Bio.splitters.testHelm3 : OK
316
+ Test result : Success : 360 : Bio.splitters.splitToMonomers : OK
316
317
  Test result : Success : 2 : Bio.splitters.getHelmMonomers : OK
317
- Test result : Success : 70 : Bio.renderers.long sequence performance : OK
318
- Test result : Success : 841 : Bio.renderers.many sequence performance : OK
319
- Test result : Success : 290 : Bio.renderers.rendererMacromoleculeFasta : OK
320
- Test result : Success : 233 : Bio.renderers.rendererMacromoleculeSeparator : OK
321
- Test result : Success : 98 : Bio.renderers.rendererMacromoleculeDifference : OK
322
- Test result : Success : 400 : Bio.renderers.afterMsa : OK
323
- Test result : Success : 241 : Bio.renderers.afterConvert : OK
324
- Test result : Success : 173 : Bio.renderers.selectRendererBySemType : OK
318
+ Test result : Success : 96 : Bio.renderers.long sequence performance : OK
319
+ Test result : Success : 975 : Bio.renderers.many sequence performance : OK
320
+ Test result : Success : 422 : Bio.renderers.rendererMacromoleculeFasta : OK
321
+ Test result : Success : 253 : Bio.renderers.rendererMacromoleculeSeparator : OK
322
+ Test result : Success : 207 : Bio.renderers.rendererMacromoleculeDifference : OK
323
+ Test result : Success : 695 : Bio.renderers.afterMsa : OK
324
+ Test result : Success : 672 : Bio.renderers.afterConvert : OK
325
+ Test result : Success : 212 : Bio.renderers.selectRendererBySemType : OK
325
326
  Test result : Success : 7 : Bio.converters.testFastaPtToSeparator : OK
326
- Test result : Success : 5 : Bio.converters.testFastaDnaToSeparator : OK
327
- Test result : Success : 5 : Bio.converters.testFastaRnaToSeparator : OK
328
- Test result : Success : 4 : Bio.converters.testFastaGapsToSeparator : OK
329
- Test result : Success : 2 : Bio.converters.testFastaPtToHelm : OK
327
+ Test result : Success : 4 : Bio.converters.testFastaDnaToSeparator : OK
328
+ Test result : Success : 12 : Bio.converters.testFastaRnaToSeparator : OK
329
+ Test result : Success : 5 : Bio.converters.testFastaGapsToSeparator : OK
330
+ Test result : Success : 3 : Bio.converters.testFastaPtToHelm : OK
330
331
  Test result : Success : 2 : Bio.converters.testFastaDnaToHelm : OK
331
332
  Test result : Success : 2 : Bio.converters.testFastaRnaToHelm : OK
332
333
  Test result : Success : 2 : Bio.converters.testFastaGapsToHelm : OK
333
- Test result : Success : 0 : Bio.converters.testSeparatorPtToFasta : OK
334
+ Test result : Success : 1 : Bio.converters.testSeparatorPtToFasta : OK
334
335
  Test result : Success : 1 : Bio.converters.testSeparatorDnaToFasta : OK
335
- Test result : Success : 0 : Bio.converters.testSeparatorRnaToFasta : OK
336
- Test result : Success : 1 : Bio.converters.testSeparatorGapsToFasta : OK
336
+ Test result : Success : 2 : Bio.converters.testSeparatorRnaToFasta : OK
337
+ Test result : Success : 0 : Bio.converters.testSeparatorGapsToFasta : OK
337
338
  Test result : Success : 0 : Bio.converters.testSeparatorPtToHelm : OK
338
339
  Test result : Success : 1 : Bio.converters.testSeparatorDnaToHelm : OK
339
340
  Test result : Success : 0 : Bio.converters.testSeparatorRnaToHelm : OK
340
- Test result : Success : 0 : Bio.converters.testSeparatorGapsToHelm : OK
341
- Test result : Success : 0 : Bio.converters.testHelmDnaToFasta : OK
341
+ Test result : Success : 1 : Bio.converters.testSeparatorGapsToHelm : OK
342
+ Test result : Success : 1 : Bio.converters.testHelmDnaToFasta : OK
342
343
  Test result : Success : 0 : Bio.converters.testHelmRnaToFasta : OK
343
344
  Test result : Success : 1 : Bio.converters.testHelmPtToFasta : OK
344
- Test result : Success : 1 : Bio.converters.testHelmDnaToSeparator : OK
345
+ Test result : Success : 0 : Bio.converters.testHelmDnaToSeparator : OK
345
346
  Test result : Success : 0 : Bio.converters.testHelmRnaToSeparator : OK
346
- Test result : Success : 1 : Bio.converters.testHelmPtToSeparator : OK
347
- Test result : Success : 1 : Bio.converters.testHelmLoneRibose : OK
348
- Test result : Success : 1 : Bio.converters.testHelmLoneDeoxyribose : OK
349
- Test result : Success : 1 : Bio.converters.testHelmLonePhosphorus : OK
347
+ Test result : Success : 0 : Bio.converters.testHelmPtToSeparator : OK
348
+ Test result : Success : 2 : Bio.converters.testHelmLoneRibose : OK
349
+ Test result : Success : 2 : Bio.converters.testHelmLoneDeoxyribose : OK
350
+ Test result : Success : 2 : Bio.converters.testHelmLonePhosphorus : OK
350
351
  Test result : Success : 0 : Bio.fastaFileHandler.testNormalFormatting : OK
351
352
  Test result : Success : 0 : Bio.fastaFileHandler.testExtraSpaces : OK
352
353
  Test result : Success : 0 : Bio.fastaFileHandler.testExtraNewlines : OK
353
- Test result : Success : 1 : Bio.fastaExport.wrapSequenceSingle : OK
354
+ Test result : Success : 0 : Bio.fastaExport.wrapSequenceSingle : OK
354
355
  Test result : Success : 0 : Bio.fastaExport.wrapSequenceMulti : OK
355
- Test result : Success : 2 : Bio.fastaExport.saveAsFastaTest1 : OK
356
+ Test result : Success : 1 : Bio.fastaExport.saveAsFastaTest1 : OK
356
357
  Test result : Success : 1 : Bio.fastaExport.saveAsFastaTest2 : OK
357
358
  Test result : Success : 1 : Bio.bio.testGetStatsHelm1 : OK
358
359
  Test result : Success : 1 : Bio.bio.testGetStatsN1 : OK
359
360
  Test result : Success : 0 : Bio.bio.testGetAlphabetSimilarity : OK
360
- Test result : Success : 1 : Bio.bio.testPickupPaletteN1 : OK
361
+ Test result : Success : 2 : Bio.bio.testPickupPaletteN1 : OK
361
362
  Test result : Success : 1 : Bio.bio.testPickupPaletteN1e : OK
362
363
  Test result : Success : 1 : Bio.bio.testPickupPaletteAA1 : OK
363
364
  Test result : Success : 1 : Bio.bio.testPickupPaletteX : OK
364
- Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerSingle : OK
365
+ Test result : Success : 1 : Bio.WebLogo.monomerToShort.longMonomerSingle : OK
365
366
  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerShort : OK
366
367
  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerLong56 : OK
367
368
  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerComplexFirstPartShort : OK
368
369
  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerComplexFirstPartLong56 : OK
369
- Test result : Success : 102 : Bio.WebLogo-positions.allPositions : OK
370
- Test result : Success : 86 : Bio.WebLogo-positions.positions with shrinkEmptyTail option true (filterd) : OK
371
- Test result : Success : 88 : Bio.WebLogo-positions.positions with skipEmptyPositions option : OK
370
+ Test result : Success : 136 : Bio.WebLogo-positions.allPositions : OK
371
+ Test result : Success : 132 : Bio.WebLogo-positions.positions with shrinkEmptyTail option true (filterd) : OK
372
+ Test result : Success : 273 : Bio.WebLogo-positions.positions with skipEmptyPositions option : OK
372
373
  Test result : Success : 3 : Bio.checkInputColumn.testMsaPos : OK
373
- Test result : Success : 1 : Bio.checkInputColumn.testMsaNegHelm : OK
374
+ Test result : Success : 2 : Bio.checkInputColumn.testMsaNegHelm : OK
374
375
  Test result : Success : 1 : Bio.checkInputColumn.testMsaNegUN : OK
375
376
  Test result : Success : 1 : Bio.checkInputColumn.testGetActionFunctionMeta : OK
376
- Test result : Success : 427 : Bio.similarity/diversity.similaritySearchViewer : OK
377
- Test result : Success : 527 : Bio.similarity/diversity.diversitySearchViewer : OK
378
- Test result : Success : 216 : Bio.substructureFilters.fasta : OK
379
- Test result : Success : 435 : Bio.substructureFilters.separator : OK
377
+ Test result : Success : 462 : Bio.similarity/diversity.similaritySearchViewer : OK
378
+ Test result : Success : 362 : Bio.similarity/diversity.diversitySearchViewer : OK
379
+ Test result : Success : 253 : Bio.substructureFilters.fasta : OK
380
+ Test result : Success : 436 : Bio.substructureFilters.separator : OK
380
381
  </pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:74:11
381
382
  at Generator.next (&lt;anonymous&gt;)
382
383
  at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)