@datagrok/bio 2.1.4 → 2.1.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (16) hide show
  1. package/detectors.js +190 -157
  2. package/dist/package-test.js +277 -152
  3. package/dist/package.js +38 -19
  4. package/package.json +3 -3
  5. package/scripts/generate_fasta_csv_for_alphabets.R +6 -9
  6. package/src/__jest__/remote.test.ts +13 -7
  7. package/src/package-test.ts +4 -3
  8. package/src/package.ts +29 -21
  9. package/src/tests/{convert-test.ts → converters-test.ts} +0 -0
  10. package/src/tests/detectors-benchmark-tests.ts +165 -0
  11. package/src/tests/{detectors-test.ts → detectors-tests.ts} +0 -0
  12. package/src/tests/renderers-test.ts +1 -6
  13. package/src/tests/splitters-test.ts +0 -5
  14. package/src/tests/{substructure-filter-tests.ts → substructure-filters-tests.ts} +1 -1
  15. package/src/tests/{test-sequnces-generators.ts → utils/sequences-generators.ts} +0 -0
  16. package/{test-Bio-62cc009524f3-db2d0836.html → test-Bio-62cc009524f3-6c978eb5.html} +104 -101
package/{test-Bio-62cc009524f3-db2d0836.html → test-Bio-62cc009524f3-6c978eb5.html} RENAMED
@@ -1,4 +1,4 @@
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- <html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=62cc009524f3. Commit db2d0836.</title><style type="text/css">html,
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+ <html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=62cc009524f3. Commit 6c978eb5.</title><style type="text/css">html,
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  body {
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  font-family: Arial, Helvetica, sans-serif;
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@@ -229,16 +229,7 @@ header {
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  font-size: 1rem;
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  padding: 0 0.5rem;
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  }
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- </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=62cc009524f3. Commit db2d0836.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-11-14 13:45:35</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">32.136s</div></div><div class="suite-tests"><div class="test-result failed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">failed</div><div class="test-duration">21.674s</div></div><div class="failureMessages"> <pre class="failureMsg">Error: Test result : Failed : 122 : Bio.detectors.samplesTestAlertCollectionNegativeSmarts : Error: Negative test detected semType='Macromolecule', units='separator'.
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- Test result : Failed : 0 : Bio.splitters.init : TypeError: Cannot convert undefined or null to object
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- Test result : Failed : 0 : Bio.renderers.init : TypeError: Cannot convert undefined or null to object
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- Test result : Failed : 1449 : Bio.substructureFilters.helm : Error: Expected "2", got "0"
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-
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- at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:70:20
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- at Generator.next (&lt;anonymous&gt;)
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- at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
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- at runMicrotasks (&lt;anonymous&gt;)
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- at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
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+ </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=62cc009524f3. Commit 6c978eb5.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-11-17 12:14:47</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">41.993s</div></div><div class="suite-tests"><div class="test-result passed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">passed</div><div class="test-duration">30.068s</div></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
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  at Generator.next (&lt;anonymous&gt;)
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  at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:28:58)
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  at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Using web root: http://localhost:8080</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:40:11
@@ -248,116 +239,118 @@ Test result : Failed : 1449 : Bio.substructureFilters.helm : Error: Expected "2"
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  at Object.&lt;anonymous&gt;.__awaiter (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:30:12)
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  at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:38:23)
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  at Promise.then.completed (/home/runner/work/public/public/packages/Bio/node_modules/jest-circus/build/utils.js:391:28)
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- at new Promise (&lt;anonymous&gt;)</pre><pre class="suite-consolelog-item-message">Testing Bio package</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:68:11
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+ at new Promise (&lt;anonymous&gt;)</pre><pre class="suite-consolelog-item-message">Testing Bio package</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:72:11
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  at Generator.next (&lt;anonymous&gt;)
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  at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
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  at runMicrotasks (&lt;anonymous&gt;)
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  at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Test result : Success : 1 : Bio.Palettes.testPaletteN : OK
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- Test result : Success : 0 : Bio.Palettes.testPaletteAA : OK
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+ Test result : Success : 13 : Bio.Palettes.testPaletteAA : OK
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  Test result : Success : 1 : Bio.Palettes.testPalettePtMe : OK
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- Test result : Success : 116 : Bio.detectors.NegativeEmpty : OK
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- Test result : Success : 36 : Bio.detectors.Negative1 : OK
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- Test result : Success : 76 : Bio.detectors.Negative2 : OK
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- Test result : Success : 15 : Bio.detectors.Negative3 : OK
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- Test result : Success : 490 : Bio.detectors.NegativeSmiles : OK
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- Test result : Success : 31 : Bio.detectors.Dna1 : OK
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- Test result : Success : 18 : Bio.detectors.Rna1 : OK
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- Test result : Success : 19 : Bio.detectors.AA1 : OK
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- Test result : Success : 39 : Bio.detectors.MsaDna1 : OK
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- Test result : Success : 9 : Bio.detectors.MsaAA1 : OK
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- Test result : Success : 29 : Bio.detectors.SepDna : OK
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- Test result : Success : 12 : Bio.detectors.SepRna : OK
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- Test result : Success : 21 : Bio.detectors.SepPt : OK
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- Test result : Success : 27 : Bio.detectors.SepUn1 : OK
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- Test result : Success : 22 : Bio.detectors.SepUn2 : OK
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- Test result : Success : 19 : Bio.detectors.SepMsaN1 : OK
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- Test result : Success : 503 : Bio.detectors.SamplesFastaCsvPt : OK
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- Test result : Success : 9 : Bio.detectors.SamplesFastaCsvNegativeEntry : OK
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- Test result : Success : 5 : Bio.detectors.SamplesFastaCsvNegativeLength : OK
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- Test result : Success : 96 : Bio.detectors.SamplesFastaCsvNegativeUniProtKB : OK
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- Test result : Success : 161 : Bio.detectors.SamplesFastaFastaPt : OK
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- Test result : Success : 1043 : Bio.detectors.samplesPeptidesComplexNegativeID : OK
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- Test result : Success : 27 : Bio.detectors.SamplesPeptidesComplexNegativeMeasured : OK
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- Test result : Success : 15 : Bio.detectors.SamplesPeptidesComplexNegativeValue : OK
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- Test result : Success : 282 : Bio.detectors.samplesMsaComplexUn : OK
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- Test result : Success : 13 : Bio.detectors.samplesMsaComplexNegativeActivity : OK
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- Test result : Success : 160 : Bio.detectors.samplesIdCsvNegativeID : OK
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- Test result : Success : 134 : Bio.detectors.samplesSarSmallCsvNegativeSmiles : OK
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- Test result : Success : 142 : Bio.detectors.samplesHelmCsvHELM : OK
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- Test result : Success : 5 : Bio.detectors.samplesHelmCsvNegativeActivity : OK
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- Test result : Success : 96 : Bio.detectors.samplesTestHelmNegativeID : OK
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- Test result : Success : 11 : Bio.detectors.samplesTestHelmNegativeTestType : OK
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- Test result : Success : 5 : Bio.detectors.samplesTestHelmPositiveHelmString : OK
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- Test result : Success : 4 : Bio.detectors.samplesTestHelmNegativeValid : OK
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- Test result : Success : 6 : Bio.detectors.samplesTestHelmNegativeMolWeight : OK
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- Test result : Success : 6 : Bio.detectors.samplesTestHelmNegativeMolFormula : OK
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- Test result : Success : 15 : Bio.detectors.samplesTestHelmNegativeSmiles : OK
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- Test result : Success : 384 : Bio.detectors.samplesTestDemogNegativeAll : OK
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- Test result : Success : 208 : Bio.detectors.samplesTestSmiles2NegativeSmiles : OK
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- Test result : Success : 123 : Bio.detectors.samplesTestActivityCliffsNegativeSmiles : OK
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- Test result : Success : 103 : Bio.detectors.samplesFastaPtPosSequence : OK
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- Test result : Success : 114 : Bio.detectors.samplesTestCerealNegativeCerealName : OK
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- Test result : Success : 160 : Bio.detectors.samplesTestSpgi100NegativeStereoCategory : OK
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+ Test result : Success : 120 : Bio.detectors.NegativeEmpty : OK
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+ Test result : Success : 37 : Bio.detectors.Negative1 : OK
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+ Test result : Success : 48 : Bio.detectors.Negative2 : OK
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+ Test result : Success : 47 : Bio.detectors.Negative3 : OK
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+ Test result : Success : 451 : Bio.detectors.NegativeSmiles : OK
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+ Test result : Success : 32 : Bio.detectors.Dna1 : OK
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+ Test result : Success : 26 : Bio.detectors.Rna1 : OK
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+ Test result : Success : 25 : Bio.detectors.AA1 : OK
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+ Test result : Success : 20 : Bio.detectors.MsaDna1 : OK
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+ Test result : Success : 19 : Bio.detectors.MsaAA1 : OK
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+ Test result : Success : 10 : Bio.detectors.SepDna : OK
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+ Test result : Success : 22 : Bio.detectors.SepRna : OK
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+ Test result : Success : 25 : Bio.detectors.SepPt : OK
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+ Test result : Success : 12 : Bio.detectors.SepUn1 : OK
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+ Test result : Success : 18 : Bio.detectors.SepUn2 : OK
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+ Test result : Success : 30 : Bio.detectors.SepMsaN1 : OK
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+ Test result : Success : 459 : Bio.detectors.SamplesFastaCsvPt : OK
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+ Test result : Success : 23 : Bio.detectors.SamplesFastaCsvNegativeEntry : OK
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+ Test result : Success : 6 : Bio.detectors.SamplesFastaCsvNegativeLength : OK
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+ Test result : Success : 35 : Bio.detectors.SamplesFastaCsvNegativeUniProtKB : OK
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+ Test result : Success : 426 : Bio.detectors.SamplesFastaFastaPt : OK
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+ Test result : Success : 1008 : Bio.detectors.samplesPeptidesComplexNegativeID : OK
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+ Test result : Success : 28 : Bio.detectors.SamplesPeptidesComplexNegativeMeasured : OK
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+ Test result : Success : 31 : Bio.detectors.SamplesPeptidesComplexNegativeValue : OK
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+ Test result : Success : 292 : Bio.detectors.samplesMsaComplexUn : OK
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+ Test result : Success : 19 : Bio.detectors.samplesMsaComplexNegativeActivity : OK
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+ Test result : Success : 239 : Bio.detectors.samplesIdCsvNegativeID : OK
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+ Test result : Success : 150 : Bio.detectors.samplesSarSmallCsvNegativeSmiles : OK
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+ Test result : Success : 192 : Bio.detectors.samplesHelmCsvHELM : OK
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+ Test result : Success : 14 : Bio.detectors.samplesHelmCsvNegativeActivity : OK
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+ Test result : Success : 155 : Bio.detectors.samplesTestHelmNegativeID : OK
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+ Test result : Success : 19 : Bio.detectors.samplesTestHelmNegativeTestType : OK
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+ Test result : Success : 21 : Bio.detectors.samplesTestHelmPositiveHelmString : OK
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+ Test result : Success : 24 : Bio.detectors.samplesTestHelmNegativeValid : OK
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+ Test result : Success : 16 : Bio.detectors.samplesTestHelmNegativeMolWeight : OK
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+ Test result : Success : 11 : Bio.detectors.samplesTestHelmNegativeMolFormula : OK
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+ Test result : Success : 17 : Bio.detectors.samplesTestHelmNegativeSmiles : OK
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+ Test result : Success : 927 : Bio.detectors.samplesTestDemogNegativeAll : OK
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+ Test result : Success : 260 : Bio.detectors.samplesTestSmiles2NegativeSmiles : OK
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+ Test result : Success : 144 : Bio.detectors.samplesTestActivityCliffsNegativeSmiles : OK
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+ Test result : Success : 118 : Bio.detectors.samplesFastaPtPosSequence : OK
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+ Test result : Success : 119 : Bio.detectors.samplesTestCerealNegativeCerealName : OK
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+ Test result : Success : 189 : Bio.detectors.samplesTestSpgi100NegativeStereoCategory : OK
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  Test result : Success : 6 : Bio.detectors.samplesTestSpgi100NegativeScaffoldNames : OK
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- Test result : Success : 5 : Bio.detectors.samplesTestSpgi100NegativePrimaryScaffoldName : OK
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+ Test result : Success : 8 : Bio.detectors.samplesTestSpgi100NegativePrimaryScaffoldName : OK
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  Test result : Success : 5 : Bio.detectors.samplesTestSpgi100NegativeSampleName : OK
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- Test result : Success : 130 : Bio.detectors.samplesTestUnichemSourcesNegativeSrcUrl : OK
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- Test result : Success : 4 : Bio.detectors.samplesTestUnichemSourcesNegativeBaseIdUrl : OK
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- Test result : Success : 123 : Bio.detectors.samplesTestDmvOfficesNegativeOfficeName : OK
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- Test result : Success : 11 : Bio.detectors.samplesTestDmvOfficesNegativeCity : OK
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- Test result : Success : 941 : Bio.MSA.isCorrect : OK
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- Test result : Success : 141 : Bio.MSA.isCorrectLong : OK
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- Test result : Success : 1146 : Bio.sequenceSpace.sequenceSpaceOpens : OK
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- Test result : Success : 538 : Bio.sequenceSpace.sequenceSpaceWithEmptyRows : OK
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- Test result : Success : 841 : Bio.activityCliffs.activityCliffsOpens : OK
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- Test result : Success : 849 : Bio.activityCliffs.activityCliffsWithEmptyRows : OK
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- Test result : Success : 1 : Bio.splitters.fastaMulti : OK
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+ Test result : Success : 122 : Bio.detectors.samplesTestUnichemSourcesNegativeSrcUrl : OK
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+ Test result : Success : 5 : Bio.detectors.samplesTestUnichemSourcesNegativeBaseIdUrl : OK
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+ Test result : Success : 125 : Bio.detectors.samplesTestDmvOfficesNegativeOfficeName : OK
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+ Test result : Success : 10 : Bio.detectors.samplesTestDmvOfficesNegativeCity : OK
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+ Test result : Success : 140 : Bio.detectors.samplesTestAlertCollectionNegativeSmarts : OK
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+ Test result : Success : 6 : Bio.detectorsBenchmark.separatorDnaShorts50Few50 : OK
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+ Test result : Success : 8636 : Bio.detectorsBenchmark.separatorDnaShorts50Many1E6 : OK
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+ Test result : Success : 1248 : Bio.MSA.isCorrect : OK
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+ Test result : Success : 114 : Bio.MSA.isCorrectLong : OK
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+ Test result : Success : 998 : Bio.sequenceSpace.sequenceSpaceOpens : OK
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+ Test result : Success : 462 : Bio.sequenceSpace.sequenceSpaceWithEmptyRows : OK
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+ Test result : Success : 749 : Bio.activityCliffs.activityCliffsOpens : OK
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+ Test result : Success : 824 : Bio.activityCliffs.activityCliffsWithEmptyRows : OK
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+ Test result : Success : 0 : Bio.splitters.fastaMulti : OK
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  Test result : Success : 1 : Bio.splitters.helm1 : OK
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  Test result : Success : 0 : Bio.splitters.helm2 : OK
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  Test result : Success : 0 : Bio.splitters.helm3-multichar : OK
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  Test result : Success : 0 : Bio.splitters.testHelm1 : OK
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  Test result : Success : 1 : Bio.splitters.testHelm2 : OK
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  Test result : Success : 0 : Bio.splitters.testHelm3 : OK
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- Test result : Success : 314 : Bio.splitters.splitToMonomers : OK
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+ Test result : Success : 285 : Bio.splitters.splitToMonomers : OK
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  Test result : Success : 2 : Bio.splitters.getHelmMonomers : OK
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- Test result : Success : 68 : Bio.renderers.long sequence performance : OK
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- Test result : Success : 774 : Bio.renderers.many sequence performance : OK
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- Test result : Success : 311 : Bio.renderers.rendererMacromoleculeFasta : OK
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- Test result : Success : 187 : Bio.renderers.rendererMacromoleculeSeparator : OK
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- Test result : Success : 62 : Bio.renderers.rendererMacromoleculeDifference : OK
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- Test result : Success : 351 : Bio.renderers.afterMsa : OK
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- Test result : Success : 236 : Bio.renderers.afterConvert : OK
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- Test result : Success : 176 : Bio.renderers.selectRendererBySemType : OK
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- Test result : Success : 0 : Bio.renderers.setRendererManually : GROK-11212
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- Test result : Success : 4 : Bio.converters.testFastaPtToSeparator : OK
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- Test result : Success : 3 : Bio.converters.testFastaDnaToSeparator : OK
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- Test result : Success : 3 : Bio.converters.testFastaRnaToSeparator : OK
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- Test result : Success : 3 : Bio.converters.testFastaGapsToSeparator : OK
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+ Test result : Success : 70 : Bio.renderers.long sequence performance : OK
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+ Test result : Success : 841 : Bio.renderers.many sequence performance : OK
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+ Test result : Success : 290 : Bio.renderers.rendererMacromoleculeFasta : OK
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+ Test result : Success : 233 : Bio.renderers.rendererMacromoleculeSeparator : OK
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+ Test result : Success : 98 : Bio.renderers.rendererMacromoleculeDifference : OK
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+ Test result : Success : 400 : Bio.renderers.afterMsa : OK
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+ Test result : Success : 241 : Bio.renderers.afterConvert : OK
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+ Test result : Success : 173 : Bio.renderers.selectRendererBySemType : OK
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+ Test result : Success : 7 : Bio.converters.testFastaPtToSeparator : OK
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+ Test result : Success : 5 : Bio.converters.testFastaDnaToSeparator : OK
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+ Test result : Success : 5 : Bio.converters.testFastaRnaToSeparator : OK
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+ Test result : Success : 4 : Bio.converters.testFastaGapsToSeparator : OK
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  Test result : Success : 2 : Bio.converters.testFastaPtToHelm : OK
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  Test result : Success : 2 : Bio.converters.testFastaDnaToHelm : OK
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- Test result : Success : 1 : Bio.converters.testFastaRnaToHelm : OK
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- Test result : Success : 7 : Bio.converters.testFastaGapsToHelm : OK
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+ Test result : Success : 2 : Bio.converters.testFastaRnaToHelm : OK
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+ Test result : Success : 2 : Bio.converters.testFastaGapsToHelm : OK
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  Test result : Success : 0 : Bio.converters.testSeparatorPtToFasta : OK
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  Test result : Success : 1 : Bio.converters.testSeparatorDnaToFasta : OK
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  Test result : Success : 0 : Bio.converters.testSeparatorRnaToFasta : OK
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- Test result : Success : 0 : Bio.converters.testSeparatorGapsToFasta : OK
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+ Test result : Success : 1 : Bio.converters.testSeparatorGapsToFasta : OK
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  Test result : Success : 0 : Bio.converters.testSeparatorPtToHelm : OK
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- Test result : Success : 0 : Bio.converters.testSeparatorDnaToHelm : OK
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+ Test result : Success : 1 : Bio.converters.testSeparatorDnaToHelm : OK
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  Test result : Success : 0 : Bio.converters.testSeparatorRnaToHelm : OK
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  Test result : Success : 0 : Bio.converters.testSeparatorGapsToHelm : OK
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- Test result : Success : 1 : Bio.converters.testHelmDnaToFasta : OK
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+ Test result : Success : 0 : Bio.converters.testHelmDnaToFasta : OK
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  Test result : Success : 0 : Bio.converters.testHelmRnaToFasta : OK
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  Test result : Success : 1 : Bio.converters.testHelmPtToFasta : OK
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- Test result : Success : 0 : Bio.converters.testHelmDnaToSeparator : OK
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+ Test result : Success : 1 : Bio.converters.testHelmDnaToSeparator : OK
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  Test result : Success : 0 : Bio.converters.testHelmRnaToSeparator : OK
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- Test result : Success : 0 : Bio.converters.testHelmPtToSeparator : OK
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- Test result : Success : 2 : Bio.converters.testHelmLoneRibose : OK
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+ Test result : Success : 1 : Bio.converters.testHelmPtToSeparator : OK
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+ Test result : Success : 1 : Bio.converters.testHelmLoneRibose : OK
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  Test result : Success : 1 : Bio.converters.testHelmLoneDeoxyribose : OK
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- Test result : Success : 2 : Bio.converters.testHelmLonePhosphorus : OK
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+ Test result : Success : 1 : Bio.converters.testHelmLonePhosphorus : OK
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  Test result : Success : 0 : Bio.fastaFileHandler.testNormalFormatting : OK
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  Test result : Success : 0 : Bio.fastaFileHandler.testExtraSpaces : OK
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  Test result : Success : 0 : Bio.fastaFileHandler.testExtraNewlines : OK
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- Test result : Success : 0 : Bio.fastaExport.wrapSequenceSingle : OK
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+ Test result : Success : 1 : Bio.fastaExport.wrapSequenceSingle : OK
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  Test result : Success : 0 : Bio.fastaExport.wrapSequenceMulti : OK
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  Test result : Success : 2 : Bio.fastaExport.saveAsFastaTest1 : OK
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  Test result : Success : 1 : Bio.fastaExport.saveAsFastaTest2 : OK
@@ -371,17 +364,27 @@ Test result : Success : 1 : Bio.bio.testPickupPaletteX : OK
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  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerSingle : OK
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  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerShort : OK
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  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerLong56 : OK
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- Test result : Success : 1 : Bio.WebLogo.monomerToShort.longMonomerComplexFirstPartShort : OK
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+ Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerComplexFirstPartShort : OK
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  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerComplexFirstPartLong56 : OK
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- Test result : Success : 83 : Bio.WebLogo-positions.allPositions : OK
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- Test result : Success : 83 : Bio.WebLogo-positions.positions with shrinkEmptyTail option true (filterd) : OK
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- Test result : Success : 76 : Bio.WebLogo-positions.positions with skipEmptyPositions option : OK
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+ Test result : Success : 102 : Bio.WebLogo-positions.allPositions : OK
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+ Test result : Success : 86 : Bio.WebLogo-positions.positions with shrinkEmptyTail option true (filterd) : OK
371
+ Test result : Success : 88 : Bio.WebLogo-positions.positions with skipEmptyPositions option : OK
379
372
  Test result : Success : 3 : Bio.checkInputColumn.testMsaPos : OK
380
373
  Test result : Success : 1 : Bio.checkInputColumn.testMsaNegHelm : OK
381
374
  Test result : Success : 1 : Bio.checkInputColumn.testMsaNegUN : OK
382
- Test result : Success : 0 : Bio.checkInputColumn.testGetActionFunctionMeta : OK
383
- Test result : Success : 365 : Bio.similarity/diversity.similaritySearchViewer : OK
384
- Test result : Success : 218 : Bio.similarity/diversity.diversitySearchViewer : OK
385
- Test result : Success : 207 : Bio.substructureFilters.fasta : OK
386
- Test result : Success : 396 : Bio.substructureFilters.separator : OK
375
+ Test result : Success : 1 : Bio.checkInputColumn.testGetActionFunctionMeta : OK
376
+ Test result : Success : 427 : Bio.similarity/diversity.similaritySearchViewer : OK
377
+ Test result : Success : 527 : Bio.similarity/diversity.diversitySearchViewer : OK
378
+ Test result : Success : 216 : Bio.substructureFilters.fasta : OK
379
+ Test result : Success : 435 : Bio.substructureFilters.separator : OK
380
+ </pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:74:11
381
+ at Generator.next (&lt;anonymous&gt;)
382
+ at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
383
+ at runMicrotasks (&lt;anonymous&gt;)
384
+ at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Test result : Skipped : 0 : Bio.detectorsBenchmark.fastaDnaShorts50Few50 : #1192
385
+ Test result : Skipped : 0 : Bio.detectorsBenchmark.fastaDnaShorts50Many1E6 : #1192
386
+ Test result : Skipped : 0 : Bio.detectorsBenchmark.fastaDnaLong1e6Few50 : #1192
387
+ Test result : Skipped : 0 : Bio.detectorsBenchmark.separatorDnaLong1e6Few50 : #1192
388
+ Test result : Skipped : 0 : Bio.renderers.setRendererManually : GROK-11212
389
+ Test result : Skipped : 0 : Bio.substructureFilters.helm : #1206
387
390
  </pre></div></div></div></div></body></html>