@datagrok/bio 2.1.2 → 2.1.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (18) hide show
  1. package/detectors.js +206 -147
  2. package/dist/package-test.js +323 -141
  3. package/dist/package.js +65 -32
  4. package/dist/vendors-node_modules_datagrok-libraries_ml_src_workers_dimensionality-reducer_js.js +3 -3
  5. package/package.json +5 -5
  6. package/scripts/generate_fasta_csv_for_alphabets.R +6 -9
  7. package/src/__jest__/remote.test.ts +13 -7
  8. package/src/package-test.ts +4 -3
  9. package/src/package.ts +31 -21
  10. package/src/tests/checkInputColumn-tests.ts +1 -1
  11. package/src/tests/{convert-test.ts → converters-test.ts} +0 -0
  12. package/src/tests/detectors-benchmark-tests.ts +165 -0
  13. package/src/tests/{detectors-test.ts → detectors-tests.ts} +18 -18
  14. package/src/tests/renderers-test.ts +2 -2
  15. package/src/tests/splitters-test.ts +1 -1
  16. package/src/tests/{substructure-filter-tests.ts → substructure-filters-tests.ts} +1 -1
  17. package/src/tests/{test-sequnces-generators.ts → utils/sequences-generators.ts} +0 -0
  18. package/{test-Bio-62cc009524f3-73ccfff9.html → test-Bio-62cc009524f3-6c978eb5.html} +114 -113
package/{test-Bio-62cc009524f3-73ccfff9.html → test-Bio-62cc009524f3-6c978eb5.html} RENAMED
@@ -1,4 +1,4 @@
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- <html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=62cc009524f3. Commit 73ccfff9.</title><style type="text/css">html,
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+ <html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=62cc009524f3. Commit 6c978eb5.</title><style type="text/css">html,
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  body {
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  font-family: Arial, Helvetica, sans-serif;
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  font-size: 1rem;
@@ -229,24 +229,7 @@ header {
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  font-size: 1rem;
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  padding: 0 0.5rem;
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  }
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- </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=62cc009524f3. Commit 73ccfff9.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-11-09 13:55:52</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">33.083s</div></div><div class="suite-tests"><div class="test-result failed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">failed</div><div class="test-duration">22.595s</div></div><div class="failureMessages"> <pre class="failureMsg">Error: Test result : Failed : 205 : Bio.splitters.splitToMonomers : TypeError: Cannot read properties of undefined (reading 'push')
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- Test result : Failed : 0 : Bio.splitters.init : TypeError: Cannot read properties of undefined (reading 'forEach')
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- Test result : Failed : 0 : Bio.splitters.init : TypeError: Cannot read properties of null (reading 'getMonomerMolsByType')
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- Test result : Failed : 289 : Bio.renderers.rendererMacromoleculeFasta : TypeError: Cannot read properties of undefined (reading 'push')
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- Test result : Failed : 208 : Bio.renderers.rendererMacromoleculeSeparator : TypeError: Cannot read properties of undefined (reading 'push')
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- Test result : Failed : 63 : Bio.renderers.rendererMacromoleculeDifference : TypeError: Cannot read properties of undefined (reading 'push')
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- Test result : Failed : 364 : Bio.renderers.afterMsa : TypeError: Cannot read properties of undefined (reading 'push')
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- Test result : Failed : 220 : Bio.renderers.afterConvert : TypeError: Cannot read properties of undefined (reading 'push')
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- Test result : Failed : 67 : Bio.renderers.selectRendererBySemType : TypeError: Cannot read properties of undefined (reading 'push')
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- Test result : Failed : 0 : Bio.renderers.init : TypeError: Cannot read properties of undefined (reading 'forEach')
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- Test result : Failed : 0 : Bio.renderers.init : TypeError: Cannot read properties of null (reading 'getMonomerMolsByType')
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- Test result : Failed : 1513 : Bio.substructureFilters.helm : Error: Expected "2", got "0"
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-
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- at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:70:20
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- at Generator.next (&lt;anonymous&gt;)
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- at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
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- at runMicrotasks (&lt;anonymous&gt;)
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- at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
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+ </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=62cc009524f3. Commit 6c978eb5.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-11-17 12:14:47</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed">1 passed</div><div class="summary-failed summary-empty">0 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">41.993s</div></div><div class="suite-tests"><div class="test-result passed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">passed</div><div class="test-duration">30.068s</div></div></div></div><div class="suite-consolelog"><div class="suite-consolelog-header">Console Log</div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:63:11)
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  at Generator.next (&lt;anonymous&gt;)
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  at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/test-node.ts:28:58)
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  at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Using web root: http://localhost:8080</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:40:11
@@ -256,107 +239,115 @@ Test result : Failed : 1513 : Bio.substructureFilters.helm : Error: Expected "2"
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  at Object.&lt;anonymous&gt;.__awaiter (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:30:12)
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  at Object.&lt;anonymous&gt; (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:38:23)
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  at Promise.then.completed (/home/runner/work/public/public/packages/Bio/node_modules/jest-circus/build/utils.js:391:28)
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- at new Promise (&lt;anonymous&gt;)</pre><pre class="suite-consolelog-item-message">Testing Bio package</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:68:11
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+ at new Promise (&lt;anonymous&gt;)</pre><pre class="suite-consolelog-item-message">Testing Bio package</pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:72:11
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  at Generator.next (&lt;anonymous&gt;)
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  at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
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  at runMicrotasks (&lt;anonymous&gt;)
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  at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Test result : Success : 1 : Bio.Palettes.testPaletteN : OK
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- Test result : Success : 1 : Bio.Palettes.testPaletteAA : OK
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- Test result : Success : 0 : Bio.Palettes.testPalettePtMe : OK
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+ Test result : Success : 13 : Bio.Palettes.testPaletteAA : OK
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+ Test result : Success : 1 : Bio.Palettes.testPalettePtMe : OK
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  Test result : Success : 120 : Bio.detectors.NegativeEmpty : OK
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- Test result : Success : 108 : Bio.detectors.Negative1 : OK
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- Test result : Success : 41 : Bio.detectors.Negative2 : OK
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- Test result : Success : 16 : Bio.detectors.Negative3 : OK
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- Test result : Success : 540 : Bio.detectors.NegativeSmiles : OK
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- Test result : Success : 52 : Bio.detectors.Dna1 : OK
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- Test result : Success : 12 : Bio.detectors.Rna1 : OK
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- Test result : Success : 15 : Bio.detectors.AA1 : OK
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- Test result : Success : 11 : Bio.detectors.MsaDna1 : OK
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- Test result : Success : 16 : Bio.detectors.MsaAA1 : OK
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- Test result : Success : 15 : Bio.detectors.SepDna : OK
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- Test result : Success : 14 : Bio.detectors.SepRna : OK
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+ Test result : Success : 37 : Bio.detectors.Negative1 : OK
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+ Test result : Success : 48 : Bio.detectors.Negative2 : OK
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+ Test result : Success : 47 : Bio.detectors.Negative3 : OK
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+ Test result : Success : 451 : Bio.detectors.NegativeSmiles : OK
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+ Test result : Success : 32 : Bio.detectors.Dna1 : OK
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+ Test result : Success : 26 : Bio.detectors.Rna1 : OK
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+ Test result : Success : 25 : Bio.detectors.AA1 : OK
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+ Test result : Success : 20 : Bio.detectors.MsaDna1 : OK
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+ Test result : Success : 19 : Bio.detectors.MsaAA1 : OK
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+ Test result : Success : 10 : Bio.detectors.SepDna : OK
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+ Test result : Success : 22 : Bio.detectors.SepRna : OK
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  Test result : Success : 25 : Bio.detectors.SepPt : OK
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- Test result : Success : 27 : Bio.detectors.SepUn1 : OK
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- Test result : Success : 9 : Bio.detectors.SepUn2 : OK
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- Test result : Success : 31 : Bio.detectors.SepMsaN1 : OK
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- Test result : Success : 508 : Bio.detectors.SamplesFastaCsvPt : OK
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- Test result : Success : 15 : Bio.detectors.SamplesFastaCsvNegativeEntry : OK
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- Test result : Success : 14 : Bio.detectors.SamplesFastaCsvNegativeLength : OK
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- Test result : Success : 94 : Bio.detectors.SamplesFastaCsvNegativeUniProtKB : OK
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- Test result : Success : 247 : Bio.detectors.SamplesFastaFastaPt : OK
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- Test result : Success : 1067 : Bio.detectors.samplesPeptidesComplexNegativeID : OK
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- Test result : Success : 34 : Bio.detectors.SamplesPeptidesComplexNegativeMeasured : OK
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- Test result : Success : 183 : Bio.detectors.SamplesPeptidesComplexNegativeValue : OK
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- Test result : Success : 259 : Bio.detectors.samplesMsaComplexUn : OK
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- Test result : Success : 43 : Bio.detectors.samplesMsaComplexNegativeActivity : OK
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- Test result : Success : 187 : Bio.detectors.samplesIdCsvNegativeID : OK
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- Test result : Success : 141 : Bio.detectors.samplesSarSmallCsvNegativeSmiles : OK
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- Test result : Success : 187 : Bio.detectors.samplesHelmCsvHELM : OK
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- Test result : Success : 19 : Bio.detectors.samplesHelmCsvNegativeActivity : OK
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- Test result : Success : 145 : Bio.detectors.samplesTestHelmNegativeID : OK
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- Test result : Success : 5 : Bio.detectors.samplesTestHelmNegativeTestType : OK
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- Test result : Success : 11 : Bio.detectors.samplesTestHelmPositiveHelmString : OK
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- Test result : Success : 4 : Bio.detectors.samplesTestHelmNegativeValid : OK
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- Test result : Success : 14 : Bio.detectors.samplesTestHelmNegativeMolWeight : OK
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- Test result : Success : 16 : Bio.detectors.samplesTestHelmNegativeMolFormula : OK
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- Test result : Success : 4 : Bio.detectors.samplesTestHelmNegativeSmiles : OK
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- Test result : Success : 988 : Bio.detectors.samplesTestDemogNegativeAll : OK
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- Test result : Success : 321 : Bio.detectors.samplesTestSmiles2NegativeSmiles : OK
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- Test result : Success : 114 : Bio.detectors.samplesTestActivityCliffsNegativeSmiles : OK
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- Test result : Success : 117 : Bio.detectors.samplesFastaPtPosSequence : OK
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- Test result : Success : 114 : Bio.detectors.samplesTestCerealNegativeCerealName : OK
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- Test result : Success : 170 : Bio.detectors.samplesTestSpgi100NegativeStereoCategory : OK
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- Test result : Success : 4 : Bio.detectors.samplesTestSpgi100NegativeScaffoldNames : OK
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- Test result : Success : 4 : Bio.detectors.samplesTestSpgi100NegativePrimaryScaffoldName : OK
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- Test result : Success : 4 : Bio.detectors.samplesTestSpgi100NegativeSampleName : OK
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- Test result : Success : 132 : Bio.detectors.samplesTestUnichemSourcesNegativeSrcUrl : OK
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- Test result : Success : 4 : Bio.detectors.samplesTestUnichemSourcesNegativeBaseIdUrl : OK
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- Test result : Success : 123 : Bio.detectors.samplesTestDmvOfficesNegativeOfficeName : OK
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- Test result : Success : 5 : Bio.detectors.samplesTestDmvOfficesNegativeCity : OK
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- Test result : Success : 131 : Bio.detectors.samplesTestAlertCollectionNegativeSmarts : OK
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- Test result : Success : 1887 : Bio.MSA.isCorrect : OK
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- Test result : Success : 72 : Bio.MSA.isCorrectLong : OK
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- Test result : Success : 910 : Bio.sequenceSpace.sequenceSpaceOpens : OK
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- Test result : Success : 438 : Bio.sequenceSpace.sequenceSpaceWithEmptyRows : OK
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- Test result : Success : 691 : Bio.activityCliffs.activityCliffsOpens : OK
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- Test result : Success : 694 : Bio.activityCliffs.activityCliffsWithEmptyRows : OK
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- Test result : Success : 1 : Bio.splitters.fastaMulti : OK
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+ Test result : Success : 12 : Bio.detectors.SepUn1 : OK
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+ Test result : Success : 18 : Bio.detectors.SepUn2 : OK
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+ Test result : Success : 30 : Bio.detectors.SepMsaN1 : OK
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+ Test result : Success : 459 : Bio.detectors.SamplesFastaCsvPt : OK
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+ Test result : Success : 23 : Bio.detectors.SamplesFastaCsvNegativeEntry : OK
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+ Test result : Success : 6 : Bio.detectors.SamplesFastaCsvNegativeLength : OK
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+ Test result : Success : 35 : Bio.detectors.SamplesFastaCsvNegativeUniProtKB : OK
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+ Test result : Success : 426 : Bio.detectors.SamplesFastaFastaPt : OK
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+ Test result : Success : 1008 : Bio.detectors.samplesPeptidesComplexNegativeID : OK
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+ Test result : Success : 28 : Bio.detectors.SamplesPeptidesComplexNegativeMeasured : OK
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+ Test result : Success : 31 : Bio.detectors.SamplesPeptidesComplexNegativeValue : OK
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+ Test result : Success : 292 : Bio.detectors.samplesMsaComplexUn : OK
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+ Test result : Success : 19 : Bio.detectors.samplesMsaComplexNegativeActivity : OK
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+ Test result : Success : 239 : Bio.detectors.samplesIdCsvNegativeID : OK
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+ Test result : Success : 150 : Bio.detectors.samplesSarSmallCsvNegativeSmiles : OK
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+ Test result : Success : 192 : Bio.detectors.samplesHelmCsvHELM : OK
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+ Test result : Success : 14 : Bio.detectors.samplesHelmCsvNegativeActivity : OK
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+ Test result : Success : 155 : Bio.detectors.samplesTestHelmNegativeID : OK
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+ Test result : Success : 19 : Bio.detectors.samplesTestHelmNegativeTestType : OK
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+ Test result : Success : 21 : Bio.detectors.samplesTestHelmPositiveHelmString : OK
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+ Test result : Success : 24 : Bio.detectors.samplesTestHelmNegativeValid : OK
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+ Test result : Success : 16 : Bio.detectors.samplesTestHelmNegativeMolWeight : OK
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+ Test result : Success : 11 : Bio.detectors.samplesTestHelmNegativeMolFormula : OK
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+ Test result : Success : 17 : Bio.detectors.samplesTestHelmNegativeSmiles : OK
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+ Test result : Success : 927 : Bio.detectors.samplesTestDemogNegativeAll : OK
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+ Test result : Success : 260 : Bio.detectors.samplesTestSmiles2NegativeSmiles : OK
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+ Test result : Success : 144 : Bio.detectors.samplesTestActivityCliffsNegativeSmiles : OK
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+ Test result : Success : 118 : Bio.detectors.samplesFastaPtPosSequence : OK
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+ Test result : Success : 119 : Bio.detectors.samplesTestCerealNegativeCerealName : OK
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+ Test result : Success : 189 : Bio.detectors.samplesTestSpgi100NegativeStereoCategory : OK
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+ Test result : Success : 6 : Bio.detectors.samplesTestSpgi100NegativeScaffoldNames : OK
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+ Test result : Success : 8 : Bio.detectors.samplesTestSpgi100NegativePrimaryScaffoldName : OK
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+ Test result : Success : 5 : Bio.detectors.samplesTestSpgi100NegativeSampleName : OK
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+ Test result : Success : 122 : Bio.detectors.samplesTestUnichemSourcesNegativeSrcUrl : OK
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+ Test result : Success : 5 : Bio.detectors.samplesTestUnichemSourcesNegativeBaseIdUrl : OK
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+ Test result : Success : 125 : Bio.detectors.samplesTestDmvOfficesNegativeOfficeName : OK
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+ Test result : Success : 10 : Bio.detectors.samplesTestDmvOfficesNegativeCity : OK
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+ Test result : Success : 140 : Bio.detectors.samplesTestAlertCollectionNegativeSmarts : OK
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+ Test result : Success : 6 : Bio.detectorsBenchmark.separatorDnaShorts50Few50 : OK
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+ Test result : Success : 8636 : Bio.detectorsBenchmark.separatorDnaShorts50Many1E6 : OK
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+ Test result : Success : 1248 : Bio.MSA.isCorrect : OK
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+ Test result : Success : 114 : Bio.MSA.isCorrectLong : OK
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+ Test result : Success : 998 : Bio.sequenceSpace.sequenceSpaceOpens : OK
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+ Test result : Success : 462 : Bio.sequenceSpace.sequenceSpaceWithEmptyRows : OK
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+ Test result : Success : 749 : Bio.activityCliffs.activityCliffsOpens : OK
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+ Test result : Success : 824 : Bio.activityCliffs.activityCliffsWithEmptyRows : OK
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+ Test result : Success : 0 : Bio.splitters.fastaMulti : OK
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  Test result : Success : 1 : Bio.splitters.helm1 : OK
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  Test result : Success : 0 : Bio.splitters.helm2 : OK
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- Test result : Success : 1 : Bio.splitters.helm3-multichar : OK
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- Test result : Success : 1 : Bio.splitters.testHelm1 : OK
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- Test result : Success : 0 : Bio.splitters.testHelm2 : OK
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- Test result : Success : 1 : Bio.splitters.testHelm3 : OK
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+ Test result : Success : 0 : Bio.splitters.helm3-multichar : OK
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+ Test result : Success : 0 : Bio.splitters.testHelm1 : OK
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+ Test result : Success : 1 : Bio.splitters.testHelm2 : OK
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+ Test result : Success : 0 : Bio.splitters.testHelm3 : OK
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+ Test result : Success : 285 : Bio.splitters.splitToMonomers : OK
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  Test result : Success : 2 : Bio.splitters.getHelmMonomers : OK
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- Test result : Success : 79 : Bio.renderers.long sequence performance : OK
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- Test result : Success : 787 : Bio.renderers.many sequence performance : OK
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- Test result : Success : 0 : Bio.renderers.setRendererManually : GROK-11212
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- Test result : Success : 5 : Bio.converters.testFastaPtToSeparator : OK
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- Test result : Success : 4 : Bio.converters.testFastaDnaToSeparator : OK
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- Test result : Success : 3 : Bio.converters.testFastaRnaToSeparator : OK
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+ Test result : Success : 70 : Bio.renderers.long sequence performance : OK
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+ Test result : Success : 841 : Bio.renderers.many sequence performance : OK
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+ Test result : Success : 290 : Bio.renderers.rendererMacromoleculeFasta : OK
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+ Test result : Success : 233 : Bio.renderers.rendererMacromoleculeSeparator : OK
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+ Test result : Success : 98 : Bio.renderers.rendererMacromoleculeDifference : OK
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+ Test result : Success : 400 : Bio.renderers.afterMsa : OK
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+ Test result : Success : 241 : Bio.renderers.afterConvert : OK
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+ Test result : Success : 173 : Bio.renderers.selectRendererBySemType : OK
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+ Test result : Success : 7 : Bio.converters.testFastaPtToSeparator : OK
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+ Test result : Success : 5 : Bio.converters.testFastaDnaToSeparator : OK
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+ Test result : Success : 5 : Bio.converters.testFastaRnaToSeparator : OK
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  Test result : Success : 4 : Bio.converters.testFastaGapsToSeparator : OK
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  Test result : Success : 2 : Bio.converters.testFastaPtToHelm : OK
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- Test result : Success : 1 : Bio.converters.testFastaDnaToHelm : OK
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- Test result : Success : 1 : Bio.converters.testFastaRnaToHelm : OK
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+ Test result : Success : 2 : Bio.converters.testFastaDnaToHelm : OK
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+ Test result : Success : 2 : Bio.converters.testFastaRnaToHelm : OK
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  Test result : Success : 2 : Bio.converters.testFastaGapsToHelm : OK
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- Test result : Success : 1 : Bio.converters.testSeparatorPtToFasta : OK
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+ Test result : Success : 0 : Bio.converters.testSeparatorPtToFasta : OK
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  Test result : Success : 1 : Bio.converters.testSeparatorDnaToFasta : OK
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  Test result : Success : 0 : Bio.converters.testSeparatorRnaToFasta : OK
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  Test result : Success : 1 : Bio.converters.testSeparatorGapsToFasta : OK
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  Test result : Success : 0 : Bio.converters.testSeparatorPtToHelm : OK
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  Test result : Success : 1 : Bio.converters.testSeparatorDnaToHelm : OK
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  Test result : Success : 0 : Bio.converters.testSeparatorRnaToHelm : OK
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- Test result : Success : 1 : Bio.converters.testSeparatorGapsToHelm : OK
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- Test result : Success : 1 : Bio.converters.testHelmDnaToFasta : OK
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+ Test result : Success : 0 : Bio.converters.testSeparatorGapsToHelm : OK
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+ Test result : Success : 0 : Bio.converters.testHelmDnaToFasta : OK
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  Test result : Success : 0 : Bio.converters.testHelmRnaToFasta : OK
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- Test result : Success : 0 : Bio.converters.testHelmPtToFasta : OK
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- Test result : Success : 0 : Bio.converters.testHelmDnaToSeparator : OK
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+ Test result : Success : 1 : Bio.converters.testHelmPtToFasta : OK
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+ Test result : Success : 1 : Bio.converters.testHelmDnaToSeparator : OK
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  Test result : Success : 0 : Bio.converters.testHelmRnaToSeparator : OK
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- Test result : Success : 0 : Bio.converters.testHelmPtToSeparator : OK
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- Test result : Success : 2 : Bio.converters.testHelmLoneRibose : OK
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- Test result : Success : 2 : Bio.converters.testHelmLoneDeoxyribose : OK
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- Test result : Success : 2 : Bio.converters.testHelmLonePhosphorus : OK
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- Test result : Success : 1 : Bio.fastaFileHandler.testNormalFormatting : OK
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+ Test result : Success : 1 : Bio.converters.testHelmPtToSeparator : OK
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+ Test result : Success : 1 : Bio.converters.testHelmLoneRibose : OK
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+ Test result : Success : 1 : Bio.converters.testHelmLoneDeoxyribose : OK
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+ Test result : Success : 1 : Bio.converters.testHelmLonePhosphorus : OK
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+ Test result : Success : 0 : Bio.fastaFileHandler.testNormalFormatting : OK
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  Test result : Success : 0 : Bio.fastaFileHandler.testExtraSpaces : OK
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  Test result : Success : 0 : Bio.fastaFileHandler.testExtraNewlines : OK
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  Test result : Success : 1 : Bio.fastaExport.wrapSequenceSingle : OK
@@ -365,25 +356,35 @@ Test result : Success : 2 : Bio.fastaExport.saveAsFastaTest1 : OK
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  Test result : Success : 1 : Bio.fastaExport.saveAsFastaTest2 : OK
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  Test result : Success : 1 : Bio.bio.testGetStatsHelm1 : OK
367
358
  Test result : Success : 1 : Bio.bio.testGetStatsN1 : OK
368
- Test result : Success : 1 : Bio.bio.testGetAlphabetSimilarity : OK
359
+ Test result : Success : 0 : Bio.bio.testGetAlphabetSimilarity : OK
369
360
  Test result : Success : 1 : Bio.bio.testPickupPaletteN1 : OK
370
- Test result : Success : 2 : Bio.bio.testPickupPaletteN1e : OK
371
- Test result : Success : 2 : Bio.bio.testPickupPaletteAA1 : OK
361
+ Test result : Success : 1 : Bio.bio.testPickupPaletteN1e : OK
362
+ Test result : Success : 1 : Bio.bio.testPickupPaletteAA1 : OK
372
363
  Test result : Success : 1 : Bio.bio.testPickupPaletteX : OK
373
364
  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerSingle : OK
374
365
  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerShort : OK
375
366
  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerLong56 : OK
376
367
  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerComplexFirstPartShort : OK
377
368
  Test result : Success : 0 : Bio.WebLogo.monomerToShort.longMonomerComplexFirstPartLong56 : OK
378
- Test result : Success : 110 : Bio.WebLogo-positions.allPositions : OK
379
- Test result : Success : 88 : Bio.WebLogo-positions.positions with shrinkEmptyTail option true (filterd) : OK
380
- Test result : Success : 95 : Bio.WebLogo-positions.positions with skipEmptyPositions option : OK
381
- Test result : Success : 5 : Bio.checkInputColumn.testMsaPos : OK
369
+ Test result : Success : 102 : Bio.WebLogo-positions.allPositions : OK
370
+ Test result : Success : 86 : Bio.WebLogo-positions.positions with shrinkEmptyTail option true (filterd) : OK
371
+ Test result : Success : 88 : Bio.WebLogo-positions.positions with skipEmptyPositions option : OK
372
+ Test result : Success : 3 : Bio.checkInputColumn.testMsaPos : OK
382
373
  Test result : Success : 1 : Bio.checkInputColumn.testMsaNegHelm : OK
383
- Test result : Success : 2 : Bio.checkInputColumn.testMsaNegUN : OK
384
- Test result : Success : 0 : Bio.checkInputColumn.testGetActionFunctionMeta : OK
385
- Test result : Success : 394 : Bio.similarity/diversity.similaritySearchViewer : OK
386
- Test result : Success : 251 : Bio.similarity/diversity.diversitySearchViewer : OK
387
- Test result : Success : 202 : Bio.substructureFilters.fasta : OK
388
- Test result : Success : 403 : Bio.substructureFilters.separator : OK
374
+ Test result : Success : 1 : Bio.checkInputColumn.testMsaNegUN : OK
375
+ Test result : Success : 1 : Bio.checkInputColumn.testGetActionFunctionMeta : OK
376
+ Test result : Success : 427 : Bio.similarity/diversity.similaritySearchViewer : OK
377
+ Test result : Success : 527 : Bio.similarity/diversity.diversitySearchViewer : OK
378
+ Test result : Success : 216 : Bio.substructureFilters.fasta : OK
379
+ Test result : Success : 435 : Bio.substructureFilters.separator : OK
380
+ </pre></div><div class="suite-consolelog-item"><pre class="suite-consolelog-item-origin"> at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:74:11
381
+ at Generator.next (&lt;anonymous&gt;)
382
+ at fulfilled (/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:31:58)
383
+ at runMicrotasks (&lt;anonymous&gt;)
384
+ at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Test result : Skipped : 0 : Bio.detectorsBenchmark.fastaDnaShorts50Few50 : #1192
385
+ Test result : Skipped : 0 : Bio.detectorsBenchmark.fastaDnaShorts50Many1E6 : #1192
386
+ Test result : Skipped : 0 : Bio.detectorsBenchmark.fastaDnaLong1e6Few50 : #1192
387
+ Test result : Skipped : 0 : Bio.detectorsBenchmark.separatorDnaLong1e6Few50 : #1192
388
+ Test result : Skipped : 0 : Bio.renderers.setRendererManually : GROK-11212
389
+ Test result : Skipped : 0 : Bio.substructureFilters.helm : #1206
389
390
  </pre></div></div></div></div></body></html>