@datagrok/bio 2.0.6 → 2.0.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (9) hide show
  1. package/detectors.js +3 -7
  2. package/dist/package-test.js +89 -46
  3. package/dist/package.js +37 -32
  4. package/package.json +2 -2
  5. package/src/calculations/monomerLevelMols.ts +0 -1
  6. package/src/tests/Palettes-test.ts +22 -3
  7. package/src/tests/WebLogo-positions-test.ts +3 -4
  8. package/src/tests/splitters-test.ts +26 -2
  9. package/{test-Bio-7770371320b2-046cde35.html → test-Bio-7770371320b2-1095ee64.html} +96 -94
package/package.json CHANGED
@@ -5,7 +5,7 @@
5
5
  "name": "Leonid Stolbov",
6
6
  "email": "lstolbov@datagrok.ai"
7
7
  },
8
- "version": "2.0.6",
8
+ "version": "2.0.8",
9
9
  "description": "Bio is a [package](https://datagrok.ai/help/develop/develop#packages) for the [Datagrok](https://datagrok.ai) platform",
10
10
  "repository": {
11
11
  "type": "git",
@@ -14,7 +14,7 @@
14
14
  },
15
15
  "dependencies": {
16
16
  "@biowasm/aioli": ">=2.4.0",
17
- "@datagrok-libraries/bio": "^4.2.1",
17
+ "@datagrok-libraries/bio": "^4.3.0",
18
18
  "@datagrok-libraries/chem-meta": "1.0.0",
19
19
  "@datagrok-libraries/ml": "^6.2.0",
20
20
  "@datagrok-libraries/utils": "^1.6.2",
package/src/calculations/monomerLevelMols.ts CHANGED
@@ -65,7 +65,6 @@ M V30 BEGIN CTAB
65
65
  molV3000 += 'M V30 END BOND\n';
66
66
  molV3000 += 'M V30 END CTAB\n';
67
67
  molV3000 += 'M END';
68
- console.log(molV3000);
69
68
  mols[i] = molV3000;
70
69
  }
71
70
 
package/src/tests/Palettes-test.ts CHANGED
@@ -1,12 +1,31 @@
1
- import {after, before, category, test, expect, expectObject} from '@datagrok-libraries/utils/src/test';
2
-
3
1
  import * as grok from 'datagrok-api/grok';
4
2
  import * as ui from 'datagrok-api/ui';
5
3
  import * as DG from 'datagrok-api/dg';
6
4
 
7
- import {_testPaletteN, _testPaletteAA} from '@datagrok-libraries/bio/src/tests/palettes.test';
5
+ import {after, before, category, test, expect, expectObject} from '@datagrok-libraries/utils/src/test';
6
+
7
+ import {_testPaletteN, _testPaletteAA} from '@datagrok-libraries/bio/src/tests/palettes-tests';
8
+ import {ALPHABET, UnitsHandler} from '@datagrok-libraries/bio/src/utils/units-handler';
9
+ import {AminoacidsPalettes} from '@datagrok-libraries/bio/src/aminoacids';
8
10
 
9
11
  category('Palettes', () => {
10
12
  test('testPaletteN', async () => { await _testPaletteN(); });
11
13
  test('testPaletteAA', async () => { await _testPaletteAA(); });
14
+
15
+ test('testPalettePtMe', async () => {
16
+ const colorMeNle = AminoacidsPalettes.GrokGroups.get('MeNle');
17
+ const colorMeA = AminoacidsPalettes.GrokGroups.get('MeA');
18
+ const colorMeG = AminoacidsPalettes.GrokGroups.get('MeG');
19
+ const colorMeF = AminoacidsPalettes.GrokGroups.get('MeF');
20
+
21
+ const colorL = AminoacidsPalettes.GrokGroups.get('L');
22
+ const colorA = AminoacidsPalettes.GrokGroups.get('A');
23
+ const colorG = AminoacidsPalettes.GrokGroups.get('G');
24
+ const colorF = AminoacidsPalettes.GrokGroups.get('F');
25
+
26
+ expect(colorMeNle, colorL);
27
+ expect(colorMeA, colorA);
28
+ expect(colorMeG, colorG);
29
+ expect(colorMeF, colorF);
30
+ });
12
31
  });
package/src/tests/WebLogo-positions-test.ts CHANGED
@@ -1,4 +1,4 @@
1
- import {after, before, category, test, expect, expectObject} from '@datagrok-libraries/utils/src/test';
1
+ import {after, before, category, test, expect, expectObject, delay} from '@datagrok-libraries/utils/src/test';
2
2
 
3
3
  import * as grok from 'datagrok-api/grok';
4
4
  import * as ui from 'datagrok-api/ui';
@@ -31,6 +31,7 @@ ATC-G-TTGC--
31
31
  tvList.forEach((tv: DG.TableView) => tv.close());
32
32
  currentView = grok.shell.tv;
33
33
  });
34
+
34
35
  test('allPositions', async () => {
35
36
  const df: DG.DataFrame = DG.DataFrame.fromCsv(csvDf1);
36
37
  const tv: DG.TableView = grok.shell.addTableView(df);
@@ -71,8 +72,8 @@ ATC-G-TTGC--
71
72
  expect(positions[i].freq[key].count, resAllDf1[i].freq[key].count);
72
73
  }
73
74
  }
74
-
75
75
  });
76
+
76
77
  test('positions with shrinkEmptyTail option true (filterd)', async () => {
77
78
  let csvDf2 = `seq
78
79
  -TC-G-TTGC--
@@ -122,7 +123,6 @@ ATC-G-TTGC--
122
123
  expect(positions[i].freq[key].count, resAllDf1[i].freq[key].count);
123
124
  }
124
125
  }
125
-
126
126
  });
127
127
 
128
128
  test('positions with skipEmptyPositions option', async () => {
@@ -163,5 +163,4 @@ ATC-G-TTGC--
163
163
  }
164
164
  }
165
165
  });
166
-
167
166
  });
package/src/tests/splitters-test.ts CHANGED
@@ -1,10 +1,10 @@
1
- import {after, before, category, test, expect, expectArray} from '@datagrok-libraries/utils/src/test';
1
+ import {after, before, category, test, expect, expectArray, expectObject} from '@datagrok-libraries/utils/src/test';
2
2
 
3
3
  import * as grok from 'datagrok-api/grok';
4
4
  import * as ui from 'datagrok-api/ui';
5
5
  import * as DG from 'datagrok-api/dg';
6
6
  import {WebLogo, SplitterFunc} from '@datagrok-libraries/bio/src/viewers/web-logo';
7
- import {splitToMonomers, _package} from '../package';
7
+ import {splitToMonomers, _package, getHelmMonomers} from '../package';
8
8
  import * as C from '../utils/constants';
9
9
 
10
10
  category('splitters', () => {
@@ -87,6 +87,30 @@ category('splitters', () => {
87
87
  splitToMonomers(seqCol);
88
88
  expect(df.columns.names().includes('17'), true);
89
89
  });
90
+
91
+ test('getHelmMonomers', async () => {
92
+ const df: DG.DataFrame = DG.DataFrame.fromCsv(
93
+ `HELM,Activity
94
+ PEPTIDE1{hHis.N.T}$$$,5.30751
95
+ PEPTIDE1{hHis.Aca.Cys_SEt}$$$,5.72388
96
+ `);
97
+ const expectedMonomerList = ['hHis', 'Aca', 'Cys_SEt', 'N', 'T'];
98
+
99
+ const helmCol: DG.Column = df.getCol('HELM');
100
+ const res = getHelmMonomers(helmCol);
101
+
102
+ const missed = expectedMonomerList.filter((m) => !res.includes(m));
103
+ const unexpected = res.filter((m) => !expectedMonomerList.includes(m));
104
+ if (missed.length > 0 || unexpected.length) {
105
+ const msgs = [];
106
+ if (missed.length > 0)
107
+ msgs.push(`Missed monomers ${JSON.stringify(missed)}.`);
108
+ if (unexpected.length > 0)
109
+ msgs.push(`Unexpected monomers ${JSON.stringify(unexpected)}.`);
110
+
111
+ throw new Error(msgs.join(' '));
112
+ }
113
+ });
90
114
  });
91
115
 
92
116
  export async function _testHelmSplitter(src: string, tgt: string[]) {
package/{test-Bio-7770371320b2-046cde35.html → test-Bio-7770371320b2-1095ee64.html} RENAMED
@@ -1,4 +1,4 @@
1
- <html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=7770371320b2. Commit 046cde35.</title><style type="text/css">html,
1
+ <html><head><meta charset="utf-8"/><title>Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=7770371320b2. Commit 1095ee64.</title><style type="text/css">html,
2
2
  body {
3
3
  font-family: Arial, Helvetica, sans-serif;
4
4
  font-size: 1rem;
@@ -229,7 +229,7 @@ header {
229
229
  font-size: 1rem;
230
230
  padding: 0 0.5rem;
231
231
  }
232
- </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=7770371320b2. Commit 046cde35.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-09-16 12:11:55</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">46.232s</div></div><div class="suite-tests"><div class="test-result failed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">failed</div><div class="test-duration">28.972s</div></div><div class="failureMessages"> <pre class="failureMsg">Error: Test result : Failed : 197 : Bio.renderers.setRendererManually : Error: Tag 'cell.renderer' has been manually set to 'MacromoleculeDifference' for column but after df was added as table, tag 'cell.renderer' has reset to 'sequence' instead of manual 'MacromoleculeDifference'.
232
+ </style></head><body><div id="jesthtml-content"><header><h1 id="title">Bio Test Report. Datagrok version datagrok/datagrok:latest SHA=7770371320b2. Commit 1095ee64.</h1></header><div id="metadata-container"><div id="timestamp">Started: 2022-09-19 08:10:18</div><div id="summary"><div id="suite-summary"><div class="summary-total">Suites (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div><div id="test-summary"><div class="summary-total">Tests (1)</div><div class="summary-passed summary-empty">0 passed</div><div class="summary-failed">1 failed</div><div class="summary-pending summary-empty">0 pending</div></div></div></div><div id="suite-1" class="suite-container"><div class="suite-info"><div class="suite-path">/home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts</div><div class="suite-time warn">40.792s</div></div><div class="suite-tests"><div class="test-result failed"><div class="test-info"><div class="test-suitename"> </div><div class="test-title">TEST</div><div class="test-status">failed</div><div class="test-duration">25.775s</div></div><div class="failureMessages"> <pre class="failureMsg">Error: Test result : Failed : 183 : Bio.renderers.setRendererManually : Error: Tag 'cell.renderer' has been manually set to 'MacromoleculeDifference' for column but after df was added as table, tag 'cell.renderer' has reset to 'sequence' instead of manual 'MacromoleculeDifference'.
233
233
 
234
234
  at /home/runner/work/public/public/packages/Bio/src/__jest__/remote.test.ts:68:20
235
235
  at Generator.next (&lt;anonymous&gt;)
@@ -251,122 +251,124 @@ header {
251
251
  at runMicrotasks (&lt;anonymous&gt;)
252
252
  at processTicksAndRejections (internal/process/task_queues.js:97:5)</pre><pre class="suite-consolelog-item-message">Test result : Success : 6 : Bio.WebLogo.testGetStats : OK
253
253
  Test result : Success : 0 : Bio.WebLogo.testGetAlphabetSimilarity : OK
254
- Test result : Success : 3 : Bio.WebLogo.testPickupPaletteN1 : OK
255
- Test result : Success : 1 : Bio.WebLogo.testPickupPaletteN1e : OK
254
+ Test result : Success : 2 : Bio.WebLogo.testPickupPaletteN1 : OK
255
+ Test result : Success : 2 : Bio.WebLogo.testPickupPaletteN1e : OK
256
256
  Test result : Success : 2 : Bio.WebLogo.testPickupPaletteAA1 : OK
257
- Test result : Success : 1 : Bio.WebLogo.testPickupPaletteX : OK
258
- Test result : Success : 0 : Bio.WebLogo.monomerToText.longMonomerSingle : OK
257
+ Test result : Success : 2 : Bio.WebLogo.testPickupPaletteX : OK
258
+ Test result : Success : 1 : Bio.WebLogo.monomerToText.longMonomerSingle : OK
259
259
  Test result : Success : 0 : Bio.WebLogo.monomerToText.longMonomerShort : OK
260
260
  Test result : Success : 0 : Bio.WebLogo.monomerToText.longMonomerLong56 : OK
261
261
  Test result : Success : 0 : Bio.WebLogo.monomerToText.longMonomerComplexFirstPartShort : OK
262
262
  Test result : Success : 0 : Bio.WebLogo.monomerToText.longMonomerComplexFirstPartLong56 : OK
263
263
  Test result : Success : 1 : Bio.Palettes.testPaletteN : OK
264
264
  Test result : Success : 0 : Bio.Palettes.testPaletteAA : OK
265
- Test result : Success : 54 : Bio.detectors.NegativeEmpty : OK
266
- Test result : Success : 18 : Bio.detectors.Negative1 : OK
267
- Test result : Success : 31 : Bio.detectors.Negative2 : OK
268
- Test result : Success : 18 : Bio.detectors.Negative3 : OK
269
- Test result : Success : 15 : Bio.detectors.NegativeSmiles : OK
270
- Test result : Success : 10 : Bio.detectors.Dna1 : OK
265
+ Test result : Success : 0 : Bio.Palettes.testPalettePtMe : OK
266
+ Test result : Success : 49 : Bio.detectors.NegativeEmpty : OK
267
+ Test result : Success : 15 : Bio.detectors.Negative1 : OK
268
+ Test result : Success : 22 : Bio.detectors.Negative2 : OK
269
+ Test result : Success : 16 : Bio.detectors.Negative3 : OK
270
+ Test result : Success : 14 : Bio.detectors.NegativeSmiles : OK
271
+ Test result : Success : 9 : Bio.detectors.Dna1 : OK
271
272
  Test result : Success : 26 : Bio.detectors.Rna1 : OK
272
- Test result : Success : 48 : Bio.detectors.AA1 : OK
273
- Test result : Success : 16 : Bio.detectors.MsaDna1 : OK
274
- Test result : Success : 9 : Bio.detectors.MsaAA1 : OK
275
- Test result : Success : 34 : Bio.detectors.SepDna : OK
276
- Test result : Success : 12 : Bio.detectors.SepRna : OK
277
- Test result : Success : 14 : Bio.detectors.SepPt : OK
278
- Test result : Success : 8 : Bio.detectors.SepUn1 : OK
279
- Test result : Success : 13 : Bio.detectors.SepUn2 : OK
280
- Test result : Success : 6 : Bio.detectors.SepMsaN1 : OK
281
- Test result : Success : 383 : Bio.detectors.SamplesFastaCsvPt : OK
282
- Test result : Success : 7 : Bio.detectors.SamplesFastaCsvNegativeEntry : OK
283
- Test result : Success : 14 : Bio.detectors.SamplesFastaCsvNegativeLength : OK
284
- Test result : Success : 48 : Bio.detectors.SamplesFastaCsvNegativeUniProtKB : OK
285
- Test result : Success : 117 : Bio.detectors.SamplesFastaFastaPt : OK
286
- Test result : Success : 707 : Bio.detectors.samplesPeptidesComplexNegativeID : OK
287
- Test result : Success : 17 : Bio.detectors.SamplesPeptidesComplexNegativeMeasured : OK
288
- Test result : Success : 137 : Bio.detectors.SamplesPeptidesComplexNegativeValue : OK
289
- Test result : Success : 162 : Bio.detectors.samplesMsaComplexUn : OK
290
- Test result : Success : 24 : Bio.detectors.samplesMsaComplexNegativeActivity : OK
291
- Test result : Success : 83 : Bio.detectors.samplesIdCsvNegativeID : OK
292
- Test result : Success : 165 : Bio.detectors.samplesSarSmallCsvNegativeSmiles : OK
293
- Test result : Success : 235 : Bio.detectors.samplesHelmCsvHELM : OK
294
- Test result : Success : 16 : Bio.detectors.samplesHelmCsvNegativeActivity : OK
295
- Test result : Success : 139 : Bio.detectors.samplesTestHelmNegativeID : OK
296
- Test result : Success : 19 : Bio.detectors.samplesTestHelmNegativeTestType : OK
297
- Test result : Success : 5 : Bio.detectors.samplesTestHelmPositiveHelmString : OK
298
- Test result : Success : 8 : Bio.detectors.samplesTestHelmNegativeValid : OK
299
- Test result : Success : 7 : Bio.detectors.samplesTestHelmNegativeMolWeight : OK
300
- Test result : Success : 6 : Bio.detectors.samplesTestHelmNegativeMolFormula : OK
301
- Test result : Success : 6 : Bio.detectors.samplesTestHelmNegativeSmiles : OK
302
- Test result : Success : 733 : Bio.detectors.samplesTestDemogNegativeAll : OK
303
- Test result : Success : 380 : Bio.detectors.samplesTestSmiles2NegativeSmiles : OK
304
- Test result : Success : 113 : Bio.detectors.samplesTestActivityCliffsNegativeSmiles : OK
305
- Test result : Success : 126 : Bio.detectors.samplesFastaPtPosSequence : OK
306
- Test result : Success : 158 : Bio.detectors.samplesTestCerealNegativeCerealName : OK
307
- Test result : Success : 229 : Bio.detectors.samplesTestSpgi100NegativeStereoCategory : OK
308
- Test result : Success : 5 : Bio.detectors.samplesTestSpgi100NegativeScaffoldNames : OK
273
+ Test result : Success : 41 : Bio.detectors.AA1 : OK
274
+ Test result : Success : 26 : Bio.detectors.MsaDna1 : OK
275
+ Test result : Success : 20 : Bio.detectors.MsaAA1 : OK
276
+ Test result : Success : 40 : Bio.detectors.SepDna : OK
277
+ Test result : Success : 21 : Bio.detectors.SepRna : OK
278
+ Test result : Success : 17 : Bio.detectors.SepPt : OK
279
+ Test result : Success : 15 : Bio.detectors.SepUn1 : OK
280
+ Test result : Success : 19 : Bio.detectors.SepUn2 : OK
281
+ Test result : Success : 18 : Bio.detectors.SepMsaN1 : OK
282
+ Test result : Success : 653 : Bio.detectors.SamplesFastaCsvPt : OK
283
+ Test result : Success : 17 : Bio.detectors.SamplesFastaCsvNegativeEntry : OK
284
+ Test result : Success : 20 : Bio.detectors.SamplesFastaCsvNegativeLength : OK
285
+ Test result : Success : 89 : Bio.detectors.SamplesFastaCsvNegativeUniProtKB : OK
286
+ Test result : Success : 417 : Bio.detectors.SamplesFastaFastaPt : OK
287
+ Test result : Success : 1139 : Bio.detectors.samplesPeptidesComplexNegativeID : OK
288
+ Test result : Success : 28 : Bio.detectors.SamplesPeptidesComplexNegativeMeasured : OK
289
+ Test result : Success : 211 : Bio.detectors.SamplesPeptidesComplexNegativeValue : OK
290
+ Test result : Success : 285 : Bio.detectors.samplesMsaComplexUn : OK
291
+ Test result : Success : 38 : Bio.detectors.samplesMsaComplexNegativeActivity : OK
292
+ Test result : Success : 212 : Bio.detectors.samplesIdCsvNegativeID : OK
293
+ Test result : Success : 242 : Bio.detectors.samplesSarSmallCsvNegativeSmiles : OK
294
+ Test result : Success : 208 : Bio.detectors.samplesHelmCsvHELM : OK
295
+ Test result : Success : 13 : Bio.detectors.samplesHelmCsvNegativeActivity : OK
296
+ Test result : Success : 248 : Bio.detectors.samplesTestHelmNegativeID : OK
297
+ Test result : Success : 15 : Bio.detectors.samplesTestHelmNegativeTestType : OK
298
+ Test result : Success : 9 : Bio.detectors.samplesTestHelmPositiveHelmString : OK
299
+ Test result : Success : 4 : Bio.detectors.samplesTestHelmNegativeValid : OK
300
+ Test result : Success : 5 : Bio.detectors.samplesTestHelmNegativeMolWeight : OK
301
+ Test result : Success : 8 : Bio.detectors.samplesTestHelmNegativeMolFormula : OK
302
+ Test result : Success : 16 : Bio.detectors.samplesTestHelmNegativeSmiles : OK
303
+ Test result : Success : 1095 : Bio.detectors.samplesTestDemogNegativeAll : OK
304
+ Test result : Success : 889 : Bio.detectors.samplesTestSmiles2NegativeSmiles : OK
305
+ Test result : Success : 274 : Bio.detectors.samplesTestActivityCliffsNegativeSmiles : OK
306
+ Test result : Success : 273 : Bio.detectors.samplesFastaPtPosSequence : OK
307
+ Test result : Success : 216 : Bio.detectors.samplesTestCerealNegativeCerealName : OK
308
+ Test result : Success : 348 : Bio.detectors.samplesTestSpgi100NegativeStereoCategory : OK
309
+ Test result : Success : 7 : Bio.detectors.samplesTestSpgi100NegativeScaffoldNames : OK
309
310
  Test result : Success : 14 : Bio.detectors.samplesTestSpgi100NegativePrimaryScaffoldName : OK
310
- Test result : Success : 6 : Bio.detectors.samplesTestSpgi100NegativeSampleName : OK
311
- Test result : Success : 160 : Bio.detectors.samplesTestUnichemSourcesNegativeSrcUrl : OK
312
- Test result : Success : 8 : Bio.detectors.samplesTestUnichemSourcesNegativeBaseIdUrl : OK
313
- Test result : Success : 136 : Bio.detectors.samplesTestDmvOfficesNegativeOfficeName : OK
314
- Test result : Success : 7 : Bio.detectors.samplesTestDmvOfficesNegativeCity : OK
315
- Test result : Success : 184 : Bio.detectors.samplesTestAlertCollectionNegativeSmarts : OK
316
- Test result : Success : 932 : Bio.MSA.isCorrect : OK
317
- Test result : Success : 293 : Bio.MSA.isCorrectLong : OK
318
- Test result : Success : 1441 : Bio.sequenceSpace.sequenceSpaceOpens : OK
319
- Test result : Success : 7627 : Bio.sequenceSpace.sequenceSpaceOpensWithEmptyRows : OK
320
- Test result : Success : 1467 : Bio.activityCliffs.activityCliffsOpen : OK
321
- Test result : Success : 1356 : Bio.activityCliffs.activityCliffsOpenWithEmptyRows : OK
311
+ Test result : Success : 29 : Bio.detectors.samplesTestSpgi100NegativeSampleName : OK
312
+ Test result : Success : 231 : Bio.detectors.samplesTestUnichemSourcesNegativeSrcUrl : OK
313
+ Test result : Success : 5 : Bio.detectors.samplesTestUnichemSourcesNegativeBaseIdUrl : OK
314
+ Test result : Success : 219 : Bio.detectors.samplesTestDmvOfficesNegativeOfficeName : OK
315
+ Test result : Success : 24 : Bio.detectors.samplesTestDmvOfficesNegativeCity : OK
316
+ Test result : Success : 249 : Bio.detectors.samplesTestAlertCollectionNegativeSmarts : OK
317
+ Test result : Success : 1661 : Bio.MSA.isCorrect : OK
318
+ Test result : Success : 306 : Bio.MSA.isCorrectLong : OK
319
+ Test result : Success : 1216 : Bio.sequenceSpace.sequenceSpaceOpens : OK
320
+ Test result : Success : 4269 : Bio.sequenceSpace.sequenceSpaceOpensWithEmptyRows : OK
321
+ Test result : Success : 947 : Bio.activityCliffs.activityCliffsOpen : OK
322
+ Test result : Success : 853 : Bio.activityCliffs.activityCliffsOpenWithEmptyRows : OK
322
323
  Test result : Success : 1 : Bio.splitters.helm1 : OK
323
324
  Test result : Success : 1 : Bio.splitters.helm2 : OK
324
- Test result : Success : 0 : Bio.splitters.helm3-multichar : OK
325
- Test result : Success : 0 : Bio.splitters.testHelm1 : OK
326
- Test result : Success : 0 : Bio.splitters.testHelm2 : OK
327
- Test result : Success : 0 : Bio.splitters.testHelm3 : OK
328
- Test result : Success : 518 : Bio.splitters.splitToMonomers : OK
329
- Test result : Success : 157 : Bio.renderers.long sequence performance : OK
330
- Test result : Success : 1230 : Bio.renderers.many sequence performance : OK
331
- Test result : Success : 372 : Bio.renderers.rendererMacromoleculeFasta : OK
332
- Test result : Success : 289 : Bio.renderers.rendererMacromoleculeSeparator : OK
333
- Test result : Success : 126 : Bio.renderers.rendererMacromoleculeDifference : OK
334
- Test result : Success : 812 : Bio.renderers.afterMsa : OK
335
- Test result : Success : 351 : Bio.renderers.afterConvert : OK
336
- Test result : Success : 178 : Bio.renderers.selectRendererBySemType : OK
337
- Test result : Success : 5 : Bio.converters.testFastaPtToSeparator : OK
338
- Test result : Success : 5 : Bio.converters.testFastaDnaToSeparator : OK
339
- Test result : Success : 13 : Bio.converters.testFastaRnaToSeparator : OK
325
+ Test result : Success : 1 : Bio.splitters.helm3-multichar : OK
326
+ Test result : Success : 1 : Bio.splitters.testHelm1 : OK
327
+ Test result : Success : 1 : Bio.splitters.testHelm2 : OK
328
+ Test result : Success : 1 : Bio.splitters.testHelm3 : OK
329
+ Test result : Success : 335 : Bio.splitters.splitToMonomers : OK
330
+ Test result : Success : 2 : Bio.splitters.getHelmMonomers : OK
331
+ Test result : Success : 93 : Bio.renderers.long sequence performance : OK
332
+ Test result : Success : 676 : Bio.renderers.many sequence performance : OK
333
+ Test result : Success : 269 : Bio.renderers.rendererMacromoleculeFasta : OK
334
+ Test result : Success : 218 : Bio.renderers.rendererMacromoleculeSeparator : OK
335
+ Test result : Success : 72 : Bio.renderers.rendererMacromoleculeDifference : OK
336
+ Test result : Success : 534 : Bio.renderers.afterMsa : OK
337
+ Test result : Success : 238 : Bio.renderers.afterConvert : OK
338
+ Test result : Success : 207 : Bio.renderers.selectRendererBySemType : OK
339
+ Test result : Success : 6 : Bio.converters.testFastaPtToSeparator : OK
340
+ Test result : Success : 10 : Bio.converters.testFastaDnaToSeparator : OK
341
+ Test result : Success : 6 : Bio.converters.testFastaRnaToSeparator : OK
340
342
  Test result : Success : 5 : Bio.converters.testFastaGapsToSeparator : OK
341
- Test result : Success : 3 : Bio.converters.testFastaPtToHelm : OK
342
- Test result : Success : 2 : Bio.converters.testFastaDnaToHelm : OK
343
- Test result : Success : 11 : Bio.converters.testFastaRnaToHelm : OK
343
+ Test result : Success : 2 : Bio.converters.testFastaPtToHelm : OK
344
+ Test result : Success : 1 : Bio.converters.testFastaDnaToHelm : OK
345
+ Test result : Success : 1 : Bio.converters.testFastaRnaToHelm : OK
344
346
  Test result : Success : 2 : Bio.converters.testFastaGapsToHelm : OK
345
347
  Test result : Success : 1 : Bio.converters.testSeparatorPtToFasta : OK
346
348
  Test result : Success : 1 : Bio.converters.testSeparatorDnaToFasta : OK
347
349
  Test result : Success : 0 : Bio.converters.testSeparatorRnaToFasta : OK
348
350
  Test result : Success : 0 : Bio.converters.testSeparatorGapsToFasta : OK
349
- Test result : Success : 1 : Bio.converters.testSeparatorPtToHelm : OK
350
- Test result : Success : 0 : Bio.converters.testSeparatorDnaToHelm : OK
351
- Test result : Success : 1 : Bio.converters.testSeparatorRnaToHelm : OK
351
+ Test result : Success : 0 : Bio.converters.testSeparatorPtToHelm : OK
352
+ Test result : Success : 1 : Bio.converters.testSeparatorDnaToHelm : OK
353
+ Test result : Success : 0 : Bio.converters.testSeparatorRnaToHelm : OK
352
354
  Test result : Success : 0 : Bio.converters.testSeparatorGapsToHelm : OK
353
- Test result : Success : 1 : Bio.converters.testHelmDnaToFasta : OK
354
- Test result : Success : 0 : Bio.converters.testHelmRnaToFasta : OK
355
+ Test result : Success : 0 : Bio.converters.testHelmDnaToFasta : OK
356
+ Test result : Success : 1 : Bio.converters.testHelmRnaToFasta : OK
355
357
  Test result : Success : 0 : Bio.converters.testHelmPtToFasta : OK
356
- Test result : Success : 1 : Bio.converters.testHelmDnaToSeparator : OK
358
+ Test result : Success : 0 : Bio.converters.testHelmDnaToSeparator : OK
357
359
  Test result : Success : 0 : Bio.converters.testHelmRnaToSeparator : OK
358
360
  Test result : Success : 0 : Bio.converters.testHelmPtToSeparator : OK
359
- Test result : Success : 3 : Bio.converters.testHelmLoneRibose : OK
361
+ Test result : Success : 2 : Bio.converters.testHelmLoneRibose : OK
360
362
  Test result : Success : 3 : Bio.converters.testHelmLoneDeoxyribose : OK
361
- Test result : Success : 2 : Bio.converters.testHelmLonePhosphorus : OK
363
+ Test result : Success : 1 : Bio.converters.testHelmLonePhosphorus : OK
362
364
  Test result : Success : 0 : Bio.fastaFileHandler.testNormalFormatting : OK
363
- Test result : Success : 0 : Bio.fastaFileHandler.testExtraSpaces : OK
365
+ Test result : Success : 1 : Bio.fastaFileHandler.testExtraSpaces : OK
364
366
  Test result : Success : 0 : Bio.fastaFileHandler.testExtraNewlines : OK
365
- Test result : Success : 116 : Bio.WebLogo-positions.allPositions : OK
366
- Test result : Success : 126 : Bio.WebLogo-positions.positions with shrinkEmptyTail option true (filterd) : OK
367
- Test result : Success : 100 : Bio.WebLogo-positions.positions with skipEmptyPositions option : OK
368
- Test result : Success : 4 : Bio.checkInputColumn.testMsaPos : OK
369
- Test result : Success : 1 : Bio.checkInputColumn.testMsaNegHelm : OK
367
+ Test result : Success : 111 : Bio.WebLogo-positions.allPositions : OK
368
+ Test result : Success : 116 : Bio.WebLogo-positions.positions with shrinkEmptyTail option true (filterd) : OK
369
+ Test result : Success : 126 : Bio.WebLogo-positions.positions with skipEmptyPositions option : OK
370
+ Test result : Success : 8 : Bio.checkInputColumn.testMsaPos : OK
371
+ Test result : Success : 2 : Bio.checkInputColumn.testMsaNegHelm : OK
370
372
  Test result : Success : 2 : Bio.checkInputColumn.testMsaNegUN : OK
371
373
  Test result : Success : 1 : Bio.checkInputColumn.testGetActionFunctionMeta : OK
372
374
  </pre></div></div></div></div></body></html>